=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdeLIy2J/inputs/rdkit_202503.6-3_ppc64el.buildinfo Source: rdkit Version: 202503.6-3 rebuilderd-worker node: osuosl6-ppc64el +------------------------------------------------------------------------------+ | Downloading sources Thu, 15 Jan 2026 03:25:46 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [137 kB] Get:7 https://deb.debian.org/debian sid InRelease [187 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.1 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [118 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2,788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [10.5 kB] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [126 kB] Get:16 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [2,468 B] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7,700 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.6 MB] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [9,688 B] Get:20 https://deb.debian.org/debian sid/main Sources [11.2 MB] Get:21 https://deb.debian.org/debian experimental/main Sources [388 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [3,180 B] Fetched 33.8 MB in 4s (7,540 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/r/rdkit/rdkit_202503.6-3.dsc' rdkit_202503.6-3.dsc 3148 SHA256:c2f3e5f5530a56ec6e2f97379bf77e693ee7a342ff083833a2884688b4822dbb 'https://deb.debian.org/debian/pool/main/r/rdkit/rdkit_202503.6.orig.tar.xz' rdkit_202503.6.orig.tar.xz 64217064 SHA256:88fa533178ab825e336ad22a6d0b8f1d392f038a99dec8787f25ad27d4a5544a 'https://deb.debian.org/debian/pool/main/r/rdkit/rdkit_202503.6-3.debian.tar.xz' rdkit_202503.6-3.debian.tar.xz 49300 SHA256:6d69ea5291ed8e5a98a35508878e44dac3f0bc34f31978ef05c6fd0472987efa 88fa533178ab825e336ad22a6d0b8f1d392f038a99dec8787f25ad27d4a5544a rdkit_202503.6.orig.tar.xz 6d69ea5291ed8e5a98a35508878e44dac3f0bc34f31978ef05c6fd0472987efa rdkit_202503.6-3.debian.tar.xz c2f3e5f5530a56ec6e2f97379bf77e693ee7a342ff083833a2884688b4822dbb rdkit_202503.6-3.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Thu, 15 Jan 2026 03:25:51 +0000 | +------------------------------------------------------------------------------+ Rebuilding rdkit=202503.6-3 in /srv/rebuilderd/tmp/rebuilderdeLIy2J/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdeLIy2J/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdeLIy2J/inputs/rdkit_202503.6-3_ppc64el.buildinfo /srv/rebuilderd/tmp/rebuilderdeLIy2J/inputs/rdkit_202503.6-3_ppc64el.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/rdkit-202503.6 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [187 kB] Get:2 http://deb.debian.org/debian unstable/main ppc64el Packages [10.0 MB] Fetched 10.2 MB in 2s (6650 kB/s) Reading package lists... Get:1 http://deb.debian.org/debian unstable/main ppc64el dpkg ppc64el 1.23.3 [1532 kB] Fetched 1532 kB in 0s (90.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpan4okjpq/dpkg_1.23.3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpangocairo-1.0-0 ppc64el 1.57.0-1 [37.6 kB] Fetched 37.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmply7yd_2q/libpangocairo-1.0-0_1.57.0-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmd0 ppc64el 1.1.0-2+b1 [34.1 kB] Fetched 34.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkishkjs8/libmd0_1.1.0-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libselinux1 ppc64el 3.9-4+b1 [96.0 kB] Fetched 96.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn3iq22i5/libselinux1_3.9-4+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libp11-kit0 ppc64el 0.25.10-1 [442 kB] Fetched 442 kB in 0s (33.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu2b4lsfe/libp11-kit0_0.25.10-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el doxygen ppc64el 1.15.0+ds1-1+b1 [5365 kB] Fetched 5365 kB in 0s (128 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvs43q7cf/doxygen_1.15.0+ds1-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-markupsafe ppc64el 3.0.3-1+b1 [15.4 kB] Fetched 15.4 kB in 0s (1099 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqsi6gu44/python3-markupsafe_3.0.3-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el postgresql-client-common all 287 [47.9 kB] Fetched 47.9 kB in 0s (3547 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp29g3icu3/postgresql-client-common_287_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el ca-certificates all 20250419 [162 kB] Fetched 162 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz7f_4r_g/ca-certificates_20250419_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxext6 ppc64el 2:1.3.4-1+b3 [51.9 kB] Fetched 51.9 kB in 0s (4120 kB/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmarpaxqb/libxext6_1.3.4-1+b3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libncurses-dev ppc64el 6.6+20251231-1 [403 kB] Fetched 403 kB in 0s (33.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb60hx3o9/libncurses-dev_6.6+20251231-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgomp1 ppc64el 15.2.0-12 [148 kB] Fetched 148 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2eeosew/libgomp1_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el texlive-pictures all 2025.20251127-1 [23.5 MB] Fetched 23.5 MB in 0s (151 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6sziqsxv/texlive-pictures_2025.20251127-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el girepository-tools ppc64el 2.86.3-4 [165 kB] Fetched 165 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ujjzh40/girepository-tools_2.86.3-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libabsl20240722 ppc64el 20240722.0-4 [511 kB] Fetched 511 kB in 0s (40.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjq4torak/libabsl20240722_20240722.0-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-serialization1.83.0 ppc64el 1.83.0-5+b1 [337 kB] Fetched 337 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkcwirl3c/libboost-serialization1.83.0_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el liblzo2-2 ppc64el 2.10-3+b1 [61.6 kB] Fetched 61.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvcz5yp4q/liblzo2-2_2.10-3+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxml2-dev ppc64el 2.15.1+dfsg-2+b1 [816 kB] Fetched 816 kB in 0s (55.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpasua8uzt/libxml2-dev_2.15.1+dfsg-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgfortran5 ppc64el 15.2.0-12 [562 kB] Fetched 562 kB in 0s (33.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmyosq3_3/libgfortran5_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libblas3 ppc64el 3.12.1-7 [169 kB] Fetched 169 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphh6n_ox7/libblas3_3.12.1-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-urllib3 all 2.5.0-1.1 [117 kB] Fetched 117 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplmvjolfj/python3-urllib3_2.5.0-1.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el t1utils ppc64el 1.41-4 [64.7 kB] Fetched 64.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkuldrz89/t1utils_1.41-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Fetched 22.1 kB in 0s (0 B/s) dpkg-name: info: moved 'xorg-sgml-doctools_1%3a1.11-1.1_all.deb' to '/srv/rebuilderd/tmp/tmpst9msnkn/xorg-sgml-doctools_1.11-1.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-dev ppc64el 3.13.9-3 [26.0 kB] Fetched 26.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuc3lyt70/python3-dev_3.13.9-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmaeparser1 ppc64el 1.3.3-3 [95.1 kB] Fetched 95.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcmv19qti/libmaeparser1_1.3.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el gcc-15-base ppc64el 15.2.0-12 [54.2 kB] Fetched 54.2 kB in 0s (5195 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe2tq33me/gcc-15-base_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libjansson4 ppc64el 2.14-2+b4 [43.4 kB] Fetched 43.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjexwjw3l/libjansson4_2.14-2+b4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn7gwo99g/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el fonts-dejavu-core all 2.37-8 [840 kB] Fetched 840 kB in 0s (69.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj62cosw1/fonts-dejavu-core_2.37-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgraphite2-3 ppc64el 1.3.14-11 [83.9 kB] Fetched 83.9 kB in 0s (7998 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1bn362rj/libgraphite2-3_1.3.14-11_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libjbig0 ppc64el 2.1-6.1+b2 [34.3 kB] Fetched 34.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpttk5cndk/libjbig0_2.1-6.1+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el preview-latex-style all 13.2-1.1 [350 kB] Fetched 350 kB in 0s (28.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxix_30db/preview-latex-style_13.2-1.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el liblapack3 ppc64el 3.12.1-7 [2156 kB] Fetched 2156 kB in 0s (93.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp81jj157x/liblapack3_3.12.1-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el hostname ppc64el 3.25 [11.3 kB] Fetched 11.3 kB in 0s (1004 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6vwcla2d/hostname_3.25_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libglib2.0-dev ppc64el 2.86.3-4 [58.1 kB] Fetched 58.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_swlyzub/libglib2.0-dev_2.86.3-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxapian30 ppc64el 1.4.29-3 [1147 kB] Fetched 1147 kB in 0s (86.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpikud30ov/libxapian30_1.4.29-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libproc2-0 ppc64el 2:4.0.4-9 [69.4 kB] Fetched 69.4 kB in 0s (5895 kB/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpedkp4kga/libproc2-0_4.0.4-9_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgirepository-2.0-0 ppc64el 2.86.3-4 [149 kB] Fetched 149 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvgglyedt/libgirepository-2.0-0_2.86.3-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-uc-micro all 1.0.3-1 [5744 B] Fetched 5744 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8lxow_y8/python3-uc-micro_1.0.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcommons-logging-java all 1.3.0-2 [68.6 kB] Fetched 68.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgrccevmp/libcommons-logging-java_1.3.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el cpp-15 ppc64el 15.2.0-12 [1288 B] Fetched 1288 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_zxu03w6/cpp-15_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el gcc-15-powerpc64le-linux-gnu ppc64el 15.2.0-12 [19.4 MB] Fetched 19.4 MB in 0s (159 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6b0klpwb/gcc-15-powerpc64le-linux-gnu_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpcre2-dev ppc64el 10.46-1 [809 kB] Fetched 809 kB in 0s (53.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqr5ycyed/libpcre2-dev_10.46-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el rpcsvc-proto ppc64el 1.4.3-1 [64.9 kB] Fetched 64.9 kB in 0s (5793 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphsik3aa8/rpcsvc-proto_1.4.3-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libacl1 ppc64el 2.3.2-2+b1 [34.5 kB] Fetched 34.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv78_2xh9/libacl1_2.3.2-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-python1.83.0 ppc64el 1.83.0-5+b1 [363 kB] Fetched 363 kB in 0s (30.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkih70u3f/libboost-python1.83.0_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-regex1.83.0 ppc64el 1.83.0-5+b1 [335 kB] Fetched 335 kB in 0s (31.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphejjhtxj/libboost-regex1.83.0_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.45.50.20251209-1 [905 kB] Fetched 905 kB in 0s (63.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj6dg3aoq/binutils-powerpc64le-linux-gnu_2.45.50.20251209-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el bzip2 ppc64el 1.0.8-6 [41.1 kB] Fetched 41.1 kB in 0s (2817 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpupt91pse/bzip2_1.0.8-6_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libz3-4 ppc64el 4.13.3-1 [8560 kB] Fetched 8560 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf__yva7n/libz3-4_4.13.3-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libkrb5support0 ppc64el 1.22.1-2 [35.6 kB] Fetched 35.6 kB in 0s (2961 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4yki7fp7/libkrb5support0_1.22.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libyaml-0-2 ppc64el 0.2.5-2+b1 [59.2 kB] Fetched 59.2 kB in 0s (5514 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp271tqsbm/libyaml-0-2_0.2.5-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libx11-dev ppc64el 2:1.8.12-1 [945 kB] Fetched 945 kB in 0s (60.9 MB/s) dpkg-name: info: moved 'libx11-dev_2%3a1.8.12-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpayv2wmbf/libx11-dev_1.8.12-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcurl4t64 ppc64el 8.18.0-1 [440 kB] Fetched 440 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp32m_4vh5/libcurl4t64_8.18.0-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libattr1 ppc64el 1:2.5.2-3 [23.8 kB] Fetched 23.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpr9ziqudz/libattr1_2.5.2-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libtext-charwidth-perl ppc64el 0.04-11+b4 [9732 B] Fetched 9732 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy0qrkidy/libtext-charwidth-perl_0.04-11+b4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libglib2.0-0t64 ppc64el 2.86.3-4 [1617 kB] Fetched 1617 kB in 0s (93.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp53zabe0b/libglib2.0-0t64_2.86.3-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libbrotli-dev ppc64el 1.1.0-2+b9 [347 kB] Fetched 347 kB in 0s (31.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn77t44id/libbrotli-dev_1.1.0-2+b9_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el librav1e0.8 ppc64el 0.8.1-7 [731 kB] Fetched 731 kB in 0s (65.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8xxg1mra/librav1e0.8_0.8.1-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmount1 ppc64el 2.41.3-3 [251 kB] Fetched 251 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp33ynkeg/libmount1_2.41.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcairo2 ppc64el 1.18.4-3 [585 kB] Fetched 585 kB in 0s (56.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4_68bkmp/libcairo2_1.18.4-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el postgresql-client-18 ppc64el 18.1-2 [2142 kB] Fetched 2142 kB in 0s (113 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwonnge8c/postgresql-client-18_18.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxcb1 ppc64el 1.17.0-2+b1 [148 kB] Fetched 148 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp004f52ra/libxcb1_1.17.0-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-requests all 2.32.5+dfsg-1 [72.4 kB] Fetched 72.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprhy7lme5/python3-requests_2.32.5+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxcb-render0 ppc64el 1.17.0-2+b1 [116 kB] Fetched 116 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjit3_jei/libxcb-render0_1.17.0-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-charset-normalizer ppc64el 3.4.4-2 [165 kB] Fetched 165 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpppvbxdes/python3-charset-normalizer_3.4.4-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxdmcp6 ppc64el 1:1.1.5-2 [28.8 kB] Fetched 28.8 kB in 0s (2235 kB/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpzl__r8sl/libxdmcp6_1.1.5-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el bash ppc64el 5.3-1 [1583 kB] Fetched 1583 kB in 0s (78.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph_31mu_f/bash_5.3-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el cmake ppc64el 4.2.1-2 [12.3 MB] Fetched 12.3 MB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwxvjihdc/cmake_4.2.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el flex ppc64el 2.6.4-8.2+b4 [424 kB] Fetched 424 kB in 0s (35.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3a16jm2c/flex_2.6.4-8.2+b4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsysprof-capture-4-dev ppc64el 49.0-5 [54.9 kB] Fetched 54.9 kB in 0s (4783 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpktboexhe/libsysprof-capture-4-dev_49.0-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgio-2.0-dev ppc64el 2.86.3-4 [1878 kB] Fetched 1878 kB in 0s (97.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxxn803bw/libgio-2.0-dev_2.86.3-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libraw23t64 ppc64el 0.21.5b-1 [425 kB] Fetched 425 kB in 0s (29.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe2o1hkl3/libraw23t64_0.21.5b-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el llvm-21 ppc64el 1:21.1.8-1+b1 [19.6 MB] Fetched 19.6 MB in 0s (145 MB/s) dpkg-name: info: moved 'llvm-21_1%3a21.1.8-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphpzrj7_k/llvm-21_21.1.8-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-myst-parser all 4.0.1-1 [78.8 kB] Fetched 78.8 kB in 0s (6942 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc4tfn837/python3-myst-parser_4.0.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el pandoc-data all 3.1.11.1-3 [459 kB] Fetched 459 kB in 0s (32.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc2vpo788/pandoc-data_3.1.11.1-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-numpy-dev ppc64el 1.83.0.2+b2 [3640 B] Fetched 3640 B in 0s (246 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe6_ovofm/libboost-numpy-dev_1.83.0.2+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (1360 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5s2hu6f2/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libstdc++6 ppc64el 15.2.0-12 [825 kB] Fetched 825 kB in 0s (36.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvhcuaw9j/libstdc++6_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el dpkg-dev all 1.23.3 [1318 kB] Fetched 1318 kB in 0s (62.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplh8qf7ue/dpkg-dev_1.23.3_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-program-options1.83-dev ppc64el 1.83.0-5+b1 [380 kB] Fetched 380 kB in 0s (25.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp35vybw3r/libboost-program-options1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-serialization1.83-dev ppc64el 1.83.0-5+b1 [393 kB] Fetched 393 kB in 0s (31.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7wxisq9w/libboost-serialization1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libx11-6 ppc64el 2:1.8.12-1 [854 kB] Fetched 854 kB in 0s (62.8 MB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.12-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpy8z1ata7/libx11-6_1.8.12-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el passwd ppc64el 1:4.19.0-4 [1296 kB] Fetched 1296 kB in 0s (78.0 MB/s) dpkg-name: info: moved 'passwd_1%3a4.19.0-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpt040z6x3/passwd_4.19.0-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libfontconfig-dev ppc64el 2.17.1-3 [175 kB] Fetched 175 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx39qk0et/libfontconfig-dev_2.17.1-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libnettle8t64 ppc64el 3.10.2-1 [330 kB] Fetched 330 kB in 0s (16.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9l8_7ckf/libnettle8t64_3.10.2-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-dateutil all 2.9.0-4 [79.4 kB] Fetched 79.4 kB in 0s (7606 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7wh6fbd6/python3-dateutil_2.9.0-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-atomic1.83-dev ppc64el 1.83.0-5+b1 [235 kB] Fetched 235 kB in 0s (21.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1v7r17qb/libboost-atomic1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libclang1-21 ppc64el 1:21.1.8-1+b1 [7542 kB] Fetched 7542 kB in 0s (146 MB/s) dpkg-name: info: moved 'libclang1-21_1%3a21.1.8-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnu4wog9n/libclang1-21_21.1.8-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libicu76 ppc64el 76.1-4 [9821 kB] Fetched 9821 kB in 0s (151 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk9m03iy6/libicu76_76.1-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el fonts-lmodern all 2.005-1 [4540 kB] Fetched 4540 kB in 0s (120 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyop89l9u/fonts-lmodern_2.005-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el xz-utils ppc64el 5.8.2-1 [707 kB] Fetched 707 kB in 0s (43.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfzvbspx5/xz-utils_5.8.2-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3.13-minimal ppc64el 3.13.11-1+b1 [2277 kB] Fetched 2277 kB in 0s (92.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp246bsw2v/python3.13-minimal_3.13.11-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmount-dev ppc64el 2.41.3-3 [32.0 kB] Fetched 32.0 kB in 0s (3173 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpygq_qq4u/libmount-dev_2.41.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpcre2-32-0 ppc64el 10.46-1 [260 kB] Fetched 260 kB in 0s (23.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe4hhfz84/libpcre2-32-0_10.46-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libatomic1 ppc64el 15.2.0-12 [10.4 kB] Fetched 10.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4x4usrwo/libatomic1_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-system1.83-dev ppc64el 1.83.0-5+b1 [232 kB] Fetched 232 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpny016ey6/libboost-system1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libfreetype-dev ppc64el 2.14.1+dfsg-2 [714 kB] Fetched 714 kB in 0s (63.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsflkmcuy/libfreetype-dev_2.14.1+dfsg-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-thread1.83-dev ppc64el 1.83.0-5+b1 [282 kB] Fetched 282 kB in 0s (22.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpddet0qkl/libboost-thread1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libjs-sphinxdoc all 8.2.3-12 [27.9 kB] Fetched 27.9 kB in 0s (2695 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4kv_pivz/libjs-sphinxdoc_8.2.3-12_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el autopoint all 0.23.2-1 [772 kB] Fetched 772 kB in 0s (57.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjihvsoyi/autopoint_0.23.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxml2-16 ppc64el 2.15.1+dfsg-2+b1 [678 kB] Fetched 678 kB in 0s (50.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3lx7qmc7/libxml2-16_2.15.1+dfsg-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el m4 ppc64el 1.4.20-2 [333 kB] Fetched 333 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgpu1gufd/m4_1.4.20-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-chardet all 5.2.0+dfsg-2 [108 kB] Fetched 108 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjm9etjhn/python3-chardet_5.2.0+dfsg-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el latexmk all 1:4.87~ds-1 [514 kB] Fetched 514 kB in 0s (36.9 MB/s) dpkg-name: info: moved 'latexmk_1%3a4.87~ds-1_all.deb' to '/srv/rebuilderd/tmp/tmplv5g2gao/latexmk_4.87~ds-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [295 kB] Fetched 295 kB in 0s (25.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpycln4lmn/libwebp7_1.5.0-0.1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpam-modules ppc64el 1.7.0-5 [204 kB] Fetched 204 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxrozo7zp/libpam-modules_1.7.0-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpython3.13-dev ppc64el 3.13.11-1+b1 [5620 kB] Fetched 5620 kB in 0s (145 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp967mui_c/libpython3.13-dev_3.13.11-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el icu-devtools ppc64el 76.1-4 [222 kB] Fetched 222 kB in 0s (19.5 MB/s) Get:1 http://deb.debian.org/debian unstable/main ppc64el libsqlite3-0 ppc64el 3.46.1-8 [988 kB] Fetched 988 kB in 0s (76.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9mkdn336/icu-devtools_76.1-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpogyxdgbv/libsqlite3-0_3.46.1-8_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libapache-pom-java all 33-2 [5852 B] Fetched 5852 B in 0s (532 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ryc9mdl/libapache-pom-java_33-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el build-essential ppc64el 12.12 [4628 B] Fetched 4628 B in 0s (417 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr_ab1ehl/build-essential_12.12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el fontconfig-config ppc64el 2.17.1-3 [54.7 kB] Fetched 54.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvm1msm7h/fontconfig-config_2.17.1-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (123 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_vmi0l0w/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el bison ppc64el 2:3.8.2+dfsg-1+b2 [1183 kB] Fetched 1183 kB in 0s (74.6 MB/s) dpkg-name: info: moved 'bison_2%3a3.8.2+dfsg-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpo22hzcba/bison_3.8.2+dfsg-1+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-16 ppc64el 1.16.0-1 [145 kB] Fetched 145 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3gkzo4vk/libngtcp2-16_1.16.0-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libjsoncpp26 ppc64el 1.9.6-5 [82.4 kB] Fetched 82.4 kB in 0s (7764 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0m1pvtc8/libjsoncpp26_1.9.6-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-pandas all 2.3.3+dfsg-3 [2935 kB] Fetched 2935 kB in 0s (91.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv9x6z63m/python3-pandas_2.3.3+dfsg-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libuuid1 ppc64el 2.41.3-3 [40.3 kB] Fetched 40.3 kB in 0s (3591 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9z9p_bjg/libuuid1_2.41.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-regex-dev ppc64el 1.83.0.2+b2 [3868 B] Fetched 3868 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbw9fsdl7/libboost-regex-dev_1.83.0.2+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libctf-nobfd0 ppc64el 2.45.50.20251209-1 [173 kB] Fetched 173 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfgwitolq/libctf-nobfd0_2.45.50.20251209-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-python-dev ppc64el 1.83.0.2+b2 [3896 B] Fetched 3896 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpygutmas7/libboost-python-dev_1.83.0.2+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgnutls30t64 ppc64el 3.8.11-3 [1473 kB] Fetched 1473 kB in 0s (72.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp893xotrs/libgnutls30t64_3.8.11-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxcb-render0-dev ppc64el 1.17.0-2+b1 [119 kB] Fetched 119 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplso8mk4n/libxcb-render0-dev_1.17.0-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el x11proto-dev all 2024.1-1 [603 kB] Fetched 603 kB in 0s (41.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo0udwl0g/x11proto-dev_2024.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libssl-dev ppc64el 3.5.4-1 [3154 kB] Fetched 3154 kB in 0s (106 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpusqnlr0m/libssl-dev_3.5.4-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libelf1t64 ppc64el 0.194-1 [195 kB] Fetched 195 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwl12iww2/libelf1t64_0.194-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (835 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi4yq63ob/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el zlib1g ppc64el 1:1.3.dfsg+really1.3.1-1+b2 [88.7 kB] Fetched 88.7 kB in 0s (0 B/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpwnh9xb0m/zlib1g_1.3.dfsg+really1.3.1-1+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el xfonts-encodings all 1:1.0.4-2.2 [577 kB] Fetched 577 kB in 0s (35.3 MB/s) dpkg-name: info: moved 'xfonts-encodings_1%3a1.0.4-2.2_all.deb' to '/srv/rebuilderd/tmp/tmp2rb8ph2f/xfonts-encodings_1.0.4-2.2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgmp10 ppc64el 2:6.3.0+dfsg-5 [572 kB] Fetched 572 kB in 0s (48.0 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5_ppc64el.deb' to '/srv/rebuilderd/tmp/tmplh3gkfd_/libgmp10_6.3.0+dfsg-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libfontenc1 ppc64el 1:1.1.8-1+b2 [24.2 kB] Fetched 24.2 kB in 0s (2418 kB/s) dpkg-name: info: moved 'libfontenc1_1%3a1.1.8-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp9owrff5q/libfontenc1_1.1.8-1+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libspdlog1.15 ppc64el 1:1.15.3+ds-1 [109 kB] Fetched 109 kB in 0s (0 B/s) dpkg-name: info: moved 'libspdlog1.15_1%3a1.15.3+ds-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp9txsqq_0/libspdlog1.15_1.15.3+ds-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-iniconfig all 2.1.0-2 [7540 B] Fetched 7540 B in 0s (572 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprg83ygn7/python3-iniconfig_2.1.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.3 [198 kB] Fetched 198 kB in 0s (16.7 MB/s) dpkg-name: info: moved 'libxt6t64_1%3a1.2.1-1.3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpkmqrsn8p/libxt6t64_1.2.1-1.3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-numpy1.83.0 ppc64el 1.83.0-5+b1 [246 kB] Fetched 246 kB in 0s (24.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz1urb0yl/libboost-numpy1.83.0_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el mawk ppc64el 1.3.4.20250131-2 [145 kB] Fetched 145 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_e0o32do/mawk_1.3.4.20250131-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsepol-dev ppc64el 3.9-2 [413 kB] Fetched 413 kB in 0s (39.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeyb8jff_/libsepol-dev_3.9-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpangoft2-1.0-0 ppc64el 1.57.0-1 [63.4 kB] Fetched 63.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf8j27_1n/libpangoft2-1.0-0_1.57.0-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libffi-dev ppc64el 3.5.2-3 [65.8 kB] Fetched 65.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3hfkq91g/libffi-dev_3.5.2-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libkrb5-3 ppc64el 1.22.1-2 [371 kB] Fetched 371 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ddzlj3m/libkrb5-3_1.22.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libssl3t64 ppc64el 3.5.4-1 [2510 kB] Fetched 2510 kB in 0s (116 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq92owwji/libssl3t64_3.5.4-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el findutils ppc64el 4.10.0-3 [713 kB] Fetched 713 kB in 0s (56.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl8rz1vrn/findutils_4.10.0-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libblkid1 ppc64el 2.41.3-3 [209 kB] Fetched 209 kB in 0s (18.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvzzoy2_b/libblkid1_2.41.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-mdurl all 0.1.2-1 [9444 B] Fetched 9444 B in 0s (880 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplyq5w7dk/python3-mdurl_0.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el sphinx-common all 8.2.3-12 [619 kB] Fetched 619 kB in 0s (34.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsa4rospc/sphinx-common_8.2.3-12_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-chrono1.83-dev ppc64el 1.83.0-5+b1 [246 kB] Fetched 246 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd4d0316q/libboost-chrono1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libclang-cpp21 ppc64el 1:21.1.8-1+b1 [12.6 MB] Fetched 12.6 MB in 0s (150 MB/s) dpkg-name: info: moved 'libclang-cpp21_1%3a21.1.8-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp2qdooov3/libclang-cpp21_21.1.8-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcairo-gobject2 ppc64el 1.18.4-3 [130 kB] Fetched 130 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpse1tr7gu/libcairo-gobject2_1.18.4-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libarchive13t64 ppc64el 3.8.5-1 [404 kB] Fetched 404 kB in 0s (33.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqmhwh82a/libarchive13t64_3.8.5-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libtool all 2.5.4-9 [540 kB] Fetched 540 kB in 0s (49.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp551q1wm8/libtool_2.5.4-9_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxi6 ppc64el 2:1.8.2-2 [81.2 kB] Fetched 81.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libxi6_2%3a1.8.2-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpvb12fy2i/libxi6_1.8.2-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el xdg-utils all 1.2.1-2 [75.8 kB] Fetched 75.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg2ly8bj_/xdg-utils_1.2.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libinchi-dev ppc64el 1.07.3+dfsg-1 [19.6 kB] Fetched 19.6 kB in 0s (1724 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv3f_roem/libinchi-dev_1.07.3+dfsg-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1+b1 [58.8 kB] Fetched 58.8 kB in 0s (5674 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpruq8q9_t/libpsl5t64_0.21.2-1.1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsm-dev ppc64el 2:1.2.6-1 [41.6 kB] Fetched 41.6 kB in 0s (4101 kB/s) dpkg-name: info: moved 'libsm-dev_2%3a1.2.6-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpsh3rmo9h/libsm-dev_1.2.6-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-iostreams1.83.0 ppc64el 1.83.0-5+b1 [253 kB] Fetched 253 kB in 0s (21.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpppnuesp9/libboost-iostreams1.83.0_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el ucf all 3.0052 [43.3 kB] Fetched 43.3 kB in 0s (4127 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuaxsvf60/ucf_3.0052_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libk5crypto3 ppc64el 1.22.1-2 [91.0 kB] Fetched 91.0 kB in 0s (8963 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyflbhyo5/libk5crypto3_1.22.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [195 kB] Fetched 195 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjntifihz/libpixman-1-0_0.46.4-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpaper-utils ppc64el 2.2.5-0.3+b3 [16.6 kB] Fetched 16.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcsk6up08/libpaper-utils_2.2.5-0.3+b3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el texlive-base all 2025.20251127-1 [23.1 MB] Fetched 23.1 MB in 0s (151 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppfbnhrsh/texlive-base_2025.20251127-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmagic-mgc ppc64el 1:5.46-5 [338 kB] Fetched 338 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpq36fgacl/libmagic-mgc_5.46-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcatch2-dev ppc64el 3.7.1-0.6 [622 kB] Fetched 622 kB in 0s (45.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkxjhsun9/libcatch2-dev_3.7.1-0.6_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el xml-core all 0.19 [20.1 kB] Fetched 20.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkrvgim_2/xml-core_0.19_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el g++-15-powerpc64le-linux-gnu ppc64el 15.2.0-12 [11.1 MB] Fetched 11.1 MB in 0s (146 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_oxnb623/g++-15-powerpc64le-linux-gnu_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el tar ppc64el 1.35+dfsg-3.1 [832 kB] Fetched 832 kB in 0s (59.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1hlcfzo6/tar_1.35+dfsg-3.1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libubsan1 ppc64el 15.2.0-12 [1178 kB] Fetched 1178 kB in 0s (87.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz26mke0n/libubsan1_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpipeline1 ppc64el 1.5.8-2 [43.7 kB] Fetched 43.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl3nu4a6_/libpipeline1_1.5.8-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-yaml ppc64el 6.0.3-1 [172 kB] Fetched 172 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuu4ov387/python3-yaml_6.0.3-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libyuv0 ppc64el 0.0.1922.20260106-1 [120 kB] Fetched 120 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeu13un75/libyuv0_0.0.1922.20260106-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-docutils all 0.22.4+dfsg-1 [433 kB] Fetched 433 kB in 0s (34.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj3u3_9p5/python3-docutils_0.22.4+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libharfbuzz0b ppc64el 12.3.0-4 [558 kB] Fetched 558 kB in 0s (47.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4q3oess8/libharfbuzz0b_12.3.0-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libraqm0 ppc64el 0.10.3-1 [15.6 kB] Fetched 15.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo8_2f6fx/libraqm0_0.10.3-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [115 kB] Fetched 115 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7yaixr2l/libsharpyuv0_1.5.0-0.1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el llvm-21-runtime ppc64el 1:21.1.8-1+b1 [574 kB] Fetched 574 kB in 0s (51.4 MB/s) dpkg-name: info: moved 'llvm-21-runtime_1%3a21.1.8-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpz4y9w9j5/llvm-21-runtime_21.1.8-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmkxiscc9/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libedit2 ppc64el 3.1-20251016-1 [102 kB] Fetched 102 kB in 0s (10.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbnbgbgvr/libedit2_3.1-20251016-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el ncurses-bin ppc64el 6.6+20251231-1 [450 kB] Fetched 450 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfn2x2pxi/ncurses-bin_6.6+20251231-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el cpp ppc64el 4:15.2.0-4 [1580 B] Fetched 1580 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp4uinh2ks/cpp_15.2.0-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpango-1.0-0 ppc64el 1.57.0-1 [241 kB] Fetched 241 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_quzs9ln/libpango-1.0-0_1.57.0-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libipc-run-perl all 20250809.0-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppwnwd25z/libipc-run-perl_20250809.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el cpp-15-powerpc64le-linux-gnu ppc64el 15.2.0-12 [10.1 MB] Fetched 10.1 MB in 0s (149 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ihq9sou/cpp-15-powerpc64le-linux-gnu_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (3859 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkygv_uzb/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libheif-plugin-libde265 ppc64el 1.20.2-2+b4 [17.8 kB] Fetched 17.8 kB in 0s (1775 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcxy1pyui/libheif-plugin-libde265_1.20.2-2+b4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el liblzma5 ppc64el 5.8.2-1 [334 kB] Fetched 334 kB in 0s (30.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbnf3npag/liblzma5_5.8.2-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpython3.13-minimal ppc64el 3.13.11-1+b1 [864 kB] Fetched 864 kB in 0s (68.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7c5d9w7y/libpython3.13-minimal_3.13.11-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libglib2.0-bin ppc64el 2.86.3-4 [136 kB] Fetched 136 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm1ybx7qs/libglib2.0-bin_2.86.3-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxmu6 ppc64el 2:1.1.3-4 [63.8 kB] Fetched 63.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxmu6_2%3a1.1.3-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphdjuaz3k/libxmu6_1.1.3-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3.13-dev ppc64el 3.13.11-1+b1 [505 kB] Fetched 505 kB in 0s (46.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph7a2k2x2/python3.13-dev_3.13.11-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-date-time1.83.0 ppc64el 1.83.0-5+b1 [231 kB] Fetched 231 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5mnv955m/libboost-date-time1.83.0_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libjson-perl all 4.10000-1 [87.5 kB] Fetched 87.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr9nrwgtv/libjson-perl_4.10000-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-pytz all 2025.2-5 [31.8 kB] Fetched 31.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppuw2ohzm/python3-pytz_2025.2-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el catch2 all 3.7.1-0.6 [5216 B] Fetched 5216 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu2zlcclb/catch2_3.7.1-0.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsystemd0 ppc64el 259-1 [501 kB] Fetched 501 kB in 0s (42.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxj8osunc/libsystemd0_259-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmpfr6 ppc64el 4.2.2-2 [723 kB] Fetched 723 kB in 0s (60.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprlkdx6ow/libmpfr6_4.2.2-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcwty1lke/debconf_1.5.91_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libfftw3-double3 ppc64el 3.3.10-2+b1 [391 kB] Fetched 391 kB in 0s (37.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc7k7grc1/libfftw3-double3_3.3.10-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-greenlet ppc64el 3.2.4-3 [187 kB] Fetched 187 kB in 0s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq2cwxmxi/python3-greenlet_3.2.4-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el perl-base ppc64el 5.40.1-7 [1702 kB] Fetched 1702 kB in 0s (96.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps6p15tj5/perl-base_5.40.1-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libffi8 ppc64el 3.5.2-3 [26.6 kB] Fetched 26.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphp2shb67/libffi8_3.5.2-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-mdit-py-plugins all 0.5.0-1 [33.4 kB] Fetched 33.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfzrt_h8e/python3-mdit-py-plugins_0.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libde265-0 ppc64el 1.0.16-1+b1 [191 kB] Fetched 191 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6xymkutc/libde265-0_1.0.16-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-recommonmark all 0.7.1+ds-8 [17.6 kB] Fetched 17.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpksgtrdkk/python3-recommonmark_0.7.1+ds-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgcc-15-dev ppc64el 15.2.0-12 [1468 kB] Fetched 1468 kB in 0s (96.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6x7plp2n/libgcc-15-dev_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libheif-plugin-dav1d ppc64el 1.20.2-2+b4 [19.2 kB] Fetched 19.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ime2lhk/libheif-plugin-dav1d_1.20.2-2+b4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpcre2-8-0 ppc64el 10.46-1 [286 kB] Fetched 286 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqjgd_31_/libpcre2-8-0_10.46-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el binutils-common ppc64el 2.45.50.20251209-1 [2541 kB] Fetched 2541 kB in 0s (118 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdl1k_jav/binutils-common_2.45.50.20251209-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgdbm-compat4t64 ppc64el 1.26-1 [53.1 kB] Fetched 53.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu5zw4jxr/libgdbm-compat4t64_1.26-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsqlite3-dev ppc64el 3.46.1-8 [1183 kB] Fetched 1183 kB in 0s (79.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3mflmf4k/libsqlite3-dev_3.46.1-8_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libheif1 ppc64el 1.20.2-2+b4 [604 kB] Fetched 604 kB in 0s (51.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0zr69ady/libheif1_1.20.2-2+b4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libc-dev-bin ppc64el 2.42-7 [61.1 kB] Fetched 61.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmbnuyx16/libc-dev-bin_2.42-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libzstd1 ppc64el 1.5.7+dfsg-3 [331 kB] Fetched 331 kB in 0s (29.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplhrlic5q/libzstd1_1.5.7+dfsg-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-defusedxml all 0.7.1-3 [43.4 kB] Fetched 43.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg4rz_ekt/python3-defusedxml_0.7.1-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-alabaster all 0.7.16-0.1 [27.9 kB] Fetched 27.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwlxgmv8w/python3-alabaster_0.7.16-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el native-architecture all 0.2.6 [2264 B] Fetched 2264 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpub63szsb/native-architecture_0.2.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpam0g ppc64el 1.7.0-5 [74.5 kB] Fetched 74.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp45b91jv2/libpam0g_1.7.0-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el patch ppc64el 2.8-2 [141 kB] Fetched 141 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb2tk0ftr/patch_2.8-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libbz2-1.0 ppc64el 1.0.8-6 [42.2 kB] Fetched 42.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6g98yszu/libbz2-1.0_1.0.8-6_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:15.2.0-4 [5300 B] Fetched 5300 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-powerpc64le-linux-gnu_4%3a15.2.0-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp24e5tluk/cpp-powerpc64le-linux-gnu_15.2.0-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el pandoc ppc64el 3.1.11.1+ds-4 [28.5 MB] Fetched 28.5 MB in 0s (166 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx4ex7w2_/pandoc_3.1.11.1+ds-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpython3.13 ppc64el 3.13.11-1+b1 [2294 kB] Fetched 2294 kB in 0s (93.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7z8tu26q/libpython3.13_3.13.11-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libclang-common-21-dev ppc64el 1:21.1.8-1+b1 [799 kB] Fetched 799 kB in 0s (51.8 MB/s) dpkg-name: info: moved 'libclang-common-21-dev_1%3a21.1.8-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmhih_m8z/libclang-common-21-dev_21.1.8-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libtext-wrapi18n-perl all 0.06-10 [8808 B] Fetched 8808 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5shbn1j4/libtext-wrapi18n-perl_0.06-10_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-imagesize all 1.4.1-1 [6688 B] Fetched 6688 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeejbhtmw/python3-imagesize_1.4.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el linux-libc-dev all 6.18.3-1 [2548 kB] Fetched 2548 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpksc56yaw/linux-libc-dev_6.18.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-thread-dev ppc64el 1.83.0.2+b2 [3620 B] Fetched 3620 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsxcr3h5j/libboost-thread-dev_1.83.0.2+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libuchardet0 ppc64el 0.0.8-2 [70.9 kB] Fetched 70.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1tiyak9f/libuchardet0_0.0.8-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el pkgconf-bin ppc64el 1.8.1-4 [30.6 kB] Fetched 30.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpew8kvmgs/pkgconf-bin_1.8.1-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el gettext ppc64el 0.23.2-1 [1758 kB] Fetched 1758 kB in 0s (81.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpboku0swb/gettext_0.23.2-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libobjc-15-dev ppc64el 15.2.0-12 [181 kB] Fetched 181 kB in 0s (16.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo0_kalay/libobjc-15-dev_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (37.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2yhn77on/autoconf_2.72-3.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-date-time1.83-dev ppc64el 1.83.0-5+b1 [240 kB] Fetched 240 kB in 0s (19.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvcmi7p75/libboost-date-time1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgio-2.0-dev-bin ppc64el 2.86.3-4 [188 kB] Fetched 188 kB in 0s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv8qwlqsy/libgio-2.0-dev-bin_2.86.3-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libllvm21 ppc64el 1:21.1.8-1+b1 [27.7 MB] Fetched 27.7 MB in 0s (152 MB/s) dpkg-name: info: moved 'libllvm21_1%3a21.1.8-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpoe_w_xcx/libllvm21_21.1.8-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxext-dev ppc64el 2:1.3.4-1+b3 [107 kB] Fetched 107 kB in 0s (0 B/s) dpkg-name: info: moved 'libxext-dev_2%3a1.3.4-1+b3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp3e6uba6k/libxext-dev_1.3.4-1+b3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [142 kB] Fetched 142 kB in 0s (0 B/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmporw0zqm8/python3-numpy-dev_2.3.5+ds-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el gettext-base ppc64el 0.23.2-1 [246 kB] Fetched 246 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu8auxun5/gettext-base_0.23.2-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-3 [62.6 kB] Fetched 62.6 kB in 0s (5982 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0kzzwzgv/librtmp1_2.4+20151223.gitfa8646d.1-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcc1-0 ppc64el 15.2.0-12 [43.3 kB] Fetched 43.3 kB in 0s (3882 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf4l96ea7/libcc1-0_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-10 [66.0 kB] Fetched 66.0 kB in 0s (5848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjg4wb78g/libsasl2-2_2.1.28+dfsg1-10_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libnuma1 ppc64el 2.0.19-1 [24.9 kB] Fetched 24.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpofo2nk2x/libnuma1_2.0.19-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpython3.13-stdlib ppc64el 3.13.11-1+b1 [1992 kB] Fetched 1992 kB in 0s (95.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi3_uz1vo/libpython3.13-stdlib_3.13.11-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-snowballstemmer all 3.0.1-1 [63.5 kB] Fetched 63.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzn2pts9y/python3-snowballstemmer_3.0.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libunistring5 ppc64el 1.3-2 [480 kB] Fetched 480 kB in 0s (46.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1yxfhmok/libunistring5_1.3-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcap2 ppc64el 1:2.75-10+b5 [32.1 kB] Fetched 32.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b5_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpbkua7v1d/libcap2_2.75-10+b5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxdmcp-dev ppc64el 1:1.1.5-2 [44.7 kB] Fetched 44.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libxdmcp-dev_1%3a1.1.5-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpqm0svmj9/libxdmcp-dev_1.1.5-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libglib2.0-data all 2.86.3-4 [1287 kB] Fetched 1287 kB in 0s (87.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0seit_9h/libglib2.0-data_2.86.3-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost1.83-dev ppc64el 1.83.0-5+b1 [10.6 MB] Fetched 10.6 MB in 0s (155 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdbavg4e4/libboost1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el texlive-luatex all 2025.20251127-1 [36.3 MB] Fetched 36.3 MB in 0s (171 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr156c535/texlive-luatex_2025.20251127-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-sphinx all 8.2.3-12 [478 kB] Fetched 478 kB in 0s (43.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppubnbt1d/python3-sphinx_8.2.3-12_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el tzdata all 2025c-3 [263 kB] Fetched 263 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsbzs10wi/tzdata_2025c-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libdeflate0 ppc64el 1.23-2 [43.3 kB] Fetched 43.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdu4aqono/libdeflate0_1.23-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libbz2-dev ppc64el 1.0.8-6 [36.2 kB] Fetched 36.2 kB in 0s (2918 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyki8o5ez/libbz2-dev_1.0.8-6_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpng16-16t64 ppc64el 1.6.53-1 [296 kB] Fetched 296 kB in 0s (27.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp315kj35r/libpng16-16t64_1.6.53-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libavif16 ppc64el 1.3.0-1+b2 [150 kB] Fetched 150 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61cxpxjp/libavif16_1.3.0-1+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsemanage-common all 3.9-1 [7888 B] Fetched 7888 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphiufg7bs/libsemanage-common_3.9-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libncursesw6 ppc64el 6.6+20251231-1 [154 kB] Fetched 154 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbmb2flx/libncursesw6_6.6+20251231-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libseccomp2 ppc64el 2.6.0-2+b1 [59.0 kB] Fetched 59.0 kB in 0s (5445 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyrdgf8te/libseccomp2_2.6.0-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el gcc ppc64el 4:15.2.0-4 [5164 B] Fetched 5164 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp2_wq1iho/gcc_15.2.0-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libc-bin ppc64el 2.42-7 [678 kB] Fetched 678 kB in 0s (49.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpexctl71f/libc-bin_2.42-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libnghttp3-9 ppc64el 1.12.0-1 [72.6 kB] Fetched 72.6 kB in 0s (5429 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamk577oi/libnghttp3-9_1.12.0-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el architecture-properties ppc64el 0.2.6 [2336 B] Fetched 2336 B in 0s (177 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7glr65gp/architecture-properties_0.2.6_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el base-files ppc64el 14 [72.9 kB] Fetched 72.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp90nllzar/base-files_14_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el clang-21 ppc64el 1:21.1.8-1+b1 [171 kB] Fetched 171 kB in 0s (13.4 MB/s) dpkg-name: info: moved 'clang-21_1%3a21.1.8-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp96fbtboe/clang-21_21.1.8-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el tex-common all 6.20 [29.7 kB] Fetched 29.7 kB in 0s (2952 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1t70c4hx/tex-common_6.20_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el tex-gyre all 20180621-7 [6209 kB] Fetched 6209 kB in 0s (127 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwsjiv5zg/tex-gyre_20180621-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el liblqr-1-0 ppc64el 0.4.2-2.2 [34.8 kB] Fetched 34.8 kB in 0s (2954 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxaiiu4lb/liblqr-1-0_0.4.2-2.2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-jinja2 all 3.1.6-1 [107 kB] Fetched 107 kB in 0s (8296 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptuvdiq65/python3-jinja2_3.1.6-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libhogweed6t64 ppc64el 3.10.2-1 [340 kB] Fetched 340 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpho7ylitn/libhogweed6t64_3.10.2-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el debhelper all 13.29 [943 kB] Fetched 943 kB in 0s (72.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoc98u4im/debhelper_13.29_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el imagemagick-7.q16 ppc64el 8:7.1.2.12+dfsg1-1 [729 kB] Fetched 729 kB in 0s (62.5 MB/s) dpkg-name: info: moved 'imagemagick-7.q16_8%3a7.1.2.12+dfsg1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpoj30wc28/imagemagick-7.q16_7.1.2.12+dfsg1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libidn2-0 ppc64el 2.3.8-4 [112 kB] Fetched 112 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpad_kqdln/libidn2-0_2.3.8-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsynctex2 ppc64el 2025.20250727.75242+ds-5 [68.1 kB] Fetched 68.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfprsx04u/libsynctex2_2025.20250727.75242+ds-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el hicolor-icon-theme all 0.18-2 [11.8 kB] Fetched 11.8 kB in 0s (999 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwj6gq0d_/hicolor-icon-theme_0.18-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeprf2a09/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-pygments all 2.19.2+dfsg-1 [847 kB] Fetched 847 kB in 0s (67.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp796koq8t/python3-pygments_2.19.2+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsemanage2 ppc64el 3.9-1+b1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiwfixn48/libsemanage2_3.9-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libice-dev ppc64el 2:1.1.1-1 [80.4 kB] Fetched 80.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libice-dev_2%3a1.1.1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpse0ebl0b/libice-dev_1.1.1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcairo2-dev ppc64el 1.18.4-3 [43.2 kB] Fetched 43.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpygmqohej/libcairo2-dev_1.18.4-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libuv1t64 ppc64el 1.51.0-2 [162 kB] Fetched 162 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphv4okr_c/libuv1t64_1.51.0-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libldap2 ppc64el 2.6.10+dfsg-1 [208 kB] Fetched 208 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2uu59hy_/libldap2_2.6.10+dfsg-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libfreetype6 ppc64el 2.14.1+dfsg-2 [535 kB] Fetched 535 kB in 0s (42.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprahq43sy/libfreetype6_2.14.1+dfsg-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxxhash0 ppc64el 0.8.3-2 [25.3 kB] Fetched 25.3 kB in 0s (2466 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa5eag0ln/libxxhash0_0.8.3-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxcb-shm0-dev ppc64el 1.17.0-2+b1 [108 kB] Fetched 108 kB in 0s (9251 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3z443v83/libxcb-shm0-dev_1.17.0-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el sgml-base all 1.31+nmu1 [10.9 kB] Fetched 10.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm2808g5j/sgml-base_1.31+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el liblzma-dev ppc64el 5.8.2-1 [374 kB] Fetched 374 kB in 0s (32.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_oc_0r57/liblzma-dev_5.8.2-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libimagequant0 ppc64el 4.4.1-1 [271 kB] Fetched 271 kB in 0s (22.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpua_9omb4/libimagequant0_4.4.1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el procps ppc64el 2:4.0.4-9 [887 kB] Fetched 887 kB in 0s (55.7 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp_hw0xtlf/procps_4.0.4-9_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-python1.83-dev ppc64el 1.83.0-5+b1 [366 kB] Fetched 366 kB in 0s (30.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc9m0rm5p/libboost-python1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libltdl7 ppc64el 2.5.4-9 [419 kB] Fetched 419 kB in 0s (33.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy65pen6l/libltdl7_2.5.4-9_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-roman-numerals all 4.1.0-1 [9196 B] Fetched 9196 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7qf8jph6/python3-roman-numerals_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el liblz4-1 ppc64el 1.10.0-6 [82.7 kB] Fetched 82.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5escq8h0/liblz4-1_1.10.0-6_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-crypto-ossl0 ppc64el 1.16.0-1 [27.9 kB] Fetched 27.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppckzc6qt/libngtcp2-crypto-ossl0_1.16.0-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2acl_9ww/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el liblua5.4-0 ppc64el 5.4.8-1 [155 kB] Fetched 155 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppqq51_ki/liblua5.4-0_5.4.8-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libstdc++-15-dev ppc64el 15.2.0-12 [2572 kB] Fetched 2572 kB in 0s (98.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppwg92dhj/libstdc++-15-dev_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcommons-parent-java all 56-1 [10.8 kB] Fetched 10.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_b01hqji/libcommons-parent-java_56-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libteckit0 ppc64el 2.5.13+ds-1 [336 kB] Fetched 336 kB in 0s (27.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkv6ccjrr/libteckit0_2.5.13+ds-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libbrotli1 ppc64el 1.1.0-2+b9 [334 kB] Fetched 334 kB in 0s (27.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppr5jf5hw/libbrotli1_1.1.0-2+b9_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python-babel-localedata all 2.17.0-2 [6052 kB] Fetched 6052 kB in 0s (130 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph336df5e/python-babel-localedata_2.17.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libthai0 ppc64el 0.1.30-1 [54.1 kB] Fetched 54.1 kB in 0s (5281 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxebchm9l/libthai0_0.1.30-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el postgresql-server-dev-all all 287 [14.8 kB] Fetched 14.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmrzaus50/postgresql-server-dev-all_287_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libblkid-dev ppc64el 2.41.3-3 [243 kB] Fetched 243 kB in 0s (21.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp_mfcho6/libblkid-dev_2.41.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libice6 ppc64el 2:1.1.1-1 [69.9 kB] Fetched 69.9 kB in 0s (6012 kB/s) dpkg-name: info: moved 'libice6_2%3a1.1.1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpfqtrifd6/libice6_1.1.1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libdpkg-perl all 1.23.3 [657 kB] Fetched 657 kB in 0s (44.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphr55216i/libdpkg-perl_1.23.3_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-atomic1.83.0 ppc64el 1.83.0-5+b1 [234 kB] Fetched 234 kB in 0s (20.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp27g_j5j4/libboost-atomic1.83.0_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libctf0 ppc64el 2.45.50.20251209-1 [104 kB] Fetched 104 kB in 0s (9741 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpecbfqe58/libctf0_2.45.50.20251209-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-system-dev ppc64el 1.83.0.2+b2 [3736 B] Fetched 3736 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzqqoqf4t/libboost-system-dev_1.83.0.2+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-program-options1.83.0 ppc64el 1.83.0-5+b1 [348 kB] Fetched 348 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj2okqw59/libboost-program-options1.83.0_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el cmake-data all 4.2.1-2 [2555 kB] Fetched 2555 kB in 0s (57.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpep63e2zz/cmake-data_4.2.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-markdown-it all 3.0.0-3 [59.5 kB] Fetched 59.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3by8crof/python3-markdown-it_3.0.0-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el groff-base ppc64el 1.23.0-10 [1191 kB] Fetched 1191 kB in 0s (65.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_i3kshxv/groff-base_1.23.0-10_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libssh2-1t64 ppc64el 1.11.1-1 [256 kB] Fetched 256 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwxpr_xvg/libssh2-1t64_1.11.1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el xtrans-dev all 1.6.0-1 [93.5 kB] Fetched 93.5 kB in 0s (8534 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0cw7mhgm/xtrans-dev_1.6.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libncurses6 ppc64el 6.6+20251231-1 [120 kB] Fetched 120 kB in 0s (9647 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk89yl833/libncurses6_6.6+20251231-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el fontconfig ppc64el 2.17.1-3 [192 kB] Fetched 192 kB in 0s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9sl8l7e7/fontconfig_2.17.1-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el llvm-21-linker-tools ppc64el 1:21.1.8-1+b1 [1261 kB] Fetched 1261 kB in 0s (73.7 MB/s) dpkg-name: info: moved 'llvm-21-linker-tools_1%3a21.1.8-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpw3lh6uvm/llvm-21-linker-tools_21.1.8-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el librsvg2-bin ppc64el 2.61.3+dfsg-3 [1968 kB] Fetched 1968 kB in 0s (90.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoe_dukow/librsvg2-bin_2.61.3+dfsg-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3 ppc64el 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg8wipe2o/python3_3.13.9-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libdebconfclient0 ppc64el 0.282+b2 [11.2 kB] Fetched 11.2 kB in 0s (1050 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1x_vxp6q/libdebconfclient0_0.282+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el binutils ppc64el 2.45.50.20251209-1 [69.6 kB] Fetched 69.6 kB in 0s (6636 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphwqcgvhb/binutils_2.45.50.20251209-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcap-ng0 ppc64el 0.8.5-4+b2 [18.2 kB] Fetched 18.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp29v__ha0/libcap-ng0_0.8.5-4+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el llvm-21-tools ppc64el 1:21.1.8-1+b1 [616 kB] Fetched 616 kB in 0s (60.2 MB/s) dpkg-name: info: moved 'llvm-21-tools_1%3a21.1.8-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp99efqc5e/llvm-21-tools_21.1.8-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-numpy1.83-dev ppc64el 1.83.0-5+b1 [251 kB] Fetched 251 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3k5qv_c5/libboost-numpy1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el gzip ppc64el 1.13-1 [141 kB] Fetched 141 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpupnuusky/gzip_1.13-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el librsvg2-2 ppc64el 2.61.3+dfsg-3 [1794 kB] Fetched 1794 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphobkt_f7/librsvg2-2_2.61.3+dfsg-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgdbm6t64 ppc64el 1.26-1 [82.7 kB] Fetched 82.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpielnjbba/libgdbm6t64_1.26-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libzzip-0-13t64 ppc64el 0.13.78+dfsg.1-0.2 [62.3 kB] Fetched 62.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppwg8c5fk/libzzip-0-13t64_0.13.78+dfsg.1-0.2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpython3-stdlib ppc64el 3.13.9-3 [10.5 kB] Fetched 10.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps2iwph91/libpython3-stdlib_3.13.9-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libselinux-dev ppc64el 3.9-4+b1 [190 kB] Fetched 190 kB in 0s (18.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplbiasjys/libselinux-dev_3.9-4+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el llvm-21-dev ppc64el 1:21.1.8-1+b1 [44.6 MB] Fetched 44.6 MB in 0s (159 MB/s) dpkg-name: info: moved 'llvm-21-dev_1%3a21.1.8-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp80z4h3ia/llvm-21-dev_21.1.8-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-3 [5836 kB] Fetched 5836 kB in 0s (139 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplshgxf6b/python3-pandas-lib_2.3.3+dfsg-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-sqlalchemy all 2.0.45+ds1-1 [1232 kB] Fetched 1232 kB in 0s (34.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk_600bwt/python3-sqlalchemy_2.0.45+ds1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsm6 ppc64el 2:1.2.6-1 [38.0 kB] Fetched 38.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libsm6_2%3a1.2.6-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp5y2iheg_/libsm6_1.2.6-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el fonts-dejavu-mono all 2.37-8 [489 kB] Fetched 489 kB in 0s (37.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4pjfk2e2/fonts-dejavu-mono_2.37-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-commonmark all 0.9.1-8 [45.5 kB] Fetched 45.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt60i14ez/python3-commonmark_0.9.1-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libexpat1-dev ppc64el 2.7.3-1 [161 kB] Fetched 161 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa9w7p52q/libexpat1-dev_2.7.3-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-typing-extensions all 4.15.0-2 [92.5 kB] Fetched 92.5 kB in 0s (8479 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp461qt1uj/python3-typing-extensions_4.15.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libaom3 ppc64el 3.13.1-2 [1382 kB] Fetched 1382 kB in 0s (89.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp11f7v1yx/libaom3_3.13.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-certifi all 2026.1.4+ds-1 [10.1 kB] Fetched 10.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpii_qcjwa/python3-certifi_2026.1.4+ds-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el grep ppc64el 3.12-1 [455 kB] Fetched 455 kB in 0s (39.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6a1dnfwc/grep_3.12-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:15.2.0-4 [1448 B] Fetched 1448 B in 0s (0 B/s) dpkg-name: info: moved 'gcc-powerpc64le-linux-gnu_4%3a15.2.0-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpercjcoiq/gcc-powerpc64le-linux-gnu_15.2.0-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpaper2 ppc64el 2.2.5-0.3+b3 [17.4 kB] Fetched 17.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_m4tigup/libpaper2_2.2.5-0.3+b3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-packaging all 25.0-2 [56.7 kB] Fetched 56.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpchwwj19y/python3-packaging_25.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [29.4 kB] Fetched 29.4 kB in 0s (0 B/s) dpkg-name: info: moved 'libxrender1_1%3a0.9.12-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp22aaamym/libxrender1_0.9.12-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el openssl ppc64el 3.5.4-1 [1498 kB] Fetched 1498 kB in 0s (78.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyxcat5i0/openssl_3.5.4-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgcc-s1 ppc64el 15.2.0-12 [52.4 kB] Fetched 52.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc2432yup/libgcc-s1_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el g++-15 ppc64el 15.2.0-12 [25.0 kB] Fetched 25.0 kB in 0s (2337 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnmu0q5y9/g++-15_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el bsdextrautils ppc64el 2.41.3-3 [126 kB] Fetched 126 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2a88iijv/bsdextrautils_2.41.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libperl5.40 ppc64el 5.40.1-7 [4379 kB] Fetched 4379 kB in 0s (129 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjr8tesiy/libperl5.40_5.40.1-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgssapi-krb5-2 ppc64el 1.22.1-2 [153 kB] Fetched 153 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt49nrkyl/libgssapi-krb5-2_1.22.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el man-db ppc64el 2.13.1-1 [1481 kB] Fetched 1481 kB in 0s (79.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_faprd9h/man-db_2.13.1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libobjc4 ppc64el 15.2.0-12 [48.5 kB] Fetched 48.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt6oo_nhp/libobjc4_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libfontconfig1 ppc64el 2.17.1-3 [164 kB] Fetched 164 kB in 0s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1dqnez4j/libfontconfig1_2.17.1-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libfribidi0 ppc64el 1.0.16-5 [27.7 kB] Fetched 27.7 kB in 0s (2690 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpno6e5jmh/libfribidi0_1.0.16-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el sysvinit-utils ppc64el 3.15-6 [37.3 kB] Fetched 37.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxemuwwls/sysvinit-utils_3.15-6_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1+b2 [920 kB] Fetched 920 kB in 0s (74.3 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmptkxw25h7/zlib1g-dev_1.3.dfsg+really1.3.1-1+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el ssl-cert all 1.1.3 [16.8 kB] Fetched 16.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9cjpf1ia/ssl-cert_1.1.3_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [4727 kB] Fetched 4727 kB in 0s (144 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpkxi8h7pi/python3-numpy_2.3.5+ds-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-iostreams-dev ppc64el 1.83.0.2+b2 [3580 B] Fetched 3580 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0cs5ql2r/libboost-iostreams-dev_1.83.0.2+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el dwz ppc64el 0.16-2 [113 kB] Fetched 113 kB in 0s (9789 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphghyttsm/dwz_0.16-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el adduser all 3.154 [210 kB] Fetched 210 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsf6ja44p/adduser_3.154_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [114 kB] Fetched 114 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpymisiikr/libwebpdemux2_1.5.0-0.1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libnghttp2-14 ppc64el 1.64.0-1.1+b1 [82.6 kB] Fetched 82.6 kB in 0s (7457 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqd41gbt_/libnghttp2-14_1.64.0-1.1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el uuid-dev ppc64el 2.41.3-3 [52.2 kB] Fetched 52.2 kB in 0s (5148 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6gc72nyr/uuid-dev_2.41.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el dash ppc64el 0.5.12-12 [104 kB] Fetched 104 kB in 0s (8765 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4kxsa01v/dash_0.5.12-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcoordgen-dev ppc64el 3.0.2-3 [46.7 kB] Fetched 46.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp98ptt_p8/libcoordgen-dev_3.0.2-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el perl ppc64el 5.40.1-7 [267 kB] Fetched 267 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv61gmn3q/perl_5.40.1-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libbsd0 ppc64el 0.12.2-2 [136 kB] Fetched 136 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg6bskzxt/libbsd0_0.12.2-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsvtav1enc2 ppc64el 2.3.0+dfsg-1 [1396 kB] Fetched 1396 kB in 0s (95.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwd_01k0t/libsvtav1enc2_2.3.0+dfsg-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el sed ppc64el 4.9-2 [334 kB] Fetched 334 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphy3c464e/sed_4.9-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libglib2.0-dev-bin ppc64el 2.86.3-4 [57.3 kB] Fetched 57.3 kB in 0s (5682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmconan3o/libglib2.0-dev-bin_2.86.3-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxaw7 ppc64el 2:1.0.16-1 [223 kB] Fetched 223 kB in 0s (0 B/s) dpkg-name: info: moved 'libxaw7_2%3a1.0.16-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpx326afkf/libxaw7_1.0.16-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcoordgen3 ppc64el 3.0.2-3 [236 kB] Fetched 236 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2feiky4z/libcoordgen3_3.0.2-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libdebhelper-perl all 13.29 [92.6 kB] Fetched 92.6 kB in 0s (8830 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4mfz_4ml/libdebhelper-perl_13.29_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libdav1d7 ppc64el 1.5.3-1 [390 kB] Fetched 390 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu62ao_xy/libdav1d7_1.5.3-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [313 kB] Fetched 313 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp28dwni9x/libgdk-pixbuf2.0-common_2.44.4+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libinchi1.07 ppc64el 1.07.3+dfsg-1 [588 kB] Fetched 588 kB in 0s (43.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq7tqe0o3/libinchi1.07_1.07.3+dfsg-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmagic1t64 ppc64el 1:5.46-5 [116 kB] Fetched 116 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpfjqm8s7b/libmagic1t64_5.46-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el liblcms2-2 ppc64el 2.17-1 [182 kB] Fetched 182 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzzy_85b4/liblcms2-2_2.17-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el pkgconf ppc64el 1.8.1-4 [26.2 kB] Fetched 26.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzhnump_9/pkgconf_1.8.1-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libitm1 ppc64el 15.2.0-12 [29.0 kB] Fetched 29.0 kB in 0s (2885 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp28nib_hf/libitm1_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el file ppc64el 1:5.46-5 [44.4 kB] Fetched 44.4 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.46-5_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpt7dizoij/file_5.46-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el gcc-15 ppc64el 15.2.0-12 [530 kB] Fetched 530 kB in 0s (39.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpktuvxgge/gcc-15_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el postgresql-server-dev-18 ppc64el 18.1-2 [1398 kB] Fetched 1398 kB in 0s (79.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsb50orbb/postgresql-server-dev-18_18.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpixman-1-dev ppc64el 0.46.4-1 [11.9 kB] Fetched 11.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpql5gjdsa/libpixman-1-dev_0.46.4-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpvs6b8v6r/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-regex1.83-dev ppc64el 1.83.0-5+b1 [353 kB] Fetched 353 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph597hfl7/libboost-regex1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpotrace0 ppc64el 1.16-2+b2 [26.6 kB] Fetched 26.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplynly5hb/libpotrace0_1.16-2+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxau6 ppc64el 1:1.0.11-1 [21.1 kB] Fetched 21.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libxau6_1%3a1.0.11-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp_o6jhuri/libxau6_1.0.11-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libudev1 ppc64el 259-1 [166 kB] Fetched 166 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptx4r538o/libudev1_259-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el xfonts-utils ppc64el 1:7.7+7 [99.0 kB] Fetched 99.0 kB in 0s (7725 kB/s) dpkg-name: info: moved 'xfonts-utils_1%3a7.7+7_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpaonm1oqc/xfonts-utils_7.7+7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libquadmath0 ppc64el 15.2.0-12 [157 kB] Fetched 157 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx_9ysktv/libquadmath0_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmpc3 ppc64el 1.3.1-2 [72.0 kB] Fetched 72.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp02stjqsf/libmpc3_1.3.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libasan8 ppc64el 15.2.0-12 [2719 kB] Fetched 2719 kB in 0s (93.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpego_0qi4/libasan8_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsmartcols1 ppc64el 2.41.3-3 [174 kB] Fetched 174 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq19a6hve/libsmartcols1_2.41.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libopenjp2-7 ppc64el 2.5.4-1 [226 kB] Fetched 226 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9h6_e4p_/libopenjp2-7_2.5.4-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [128 kB] Fetched 128 kB in 0s (8024 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqtrrzlq7/libwebpmux3_1.5.0-0.1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el util-linux ppc64el 2.41.3-3 [1276 kB] Fetched 1276 kB in 0s (83.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxp47khb/util-linux_2.41.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-thread1.83.0 ppc64el 1.83.0-5+b1 [271 kB] Fetched 271 kB in 0s (24.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6c8wm_6r/libboost-thread1.83.0_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el texlive-latex-recommended all 2025.20251127-1 [8513 kB] Fetched 8513 kB in 0s (145 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsiqpkrlr/texlive-latex-recommended_2025.20251127-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el lmodern all 2.005-1 [9480 kB] Fetched 9480 kB in 0s (139 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamh5y20v/lmodern_2.005-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libicu-dev ppc64el 76.1-4 [11.0 MB] Fetched 11.0 MB in 0s (148 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjhzbkb1z/libicu-dev_76.1-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el automake all 1:1.18.1-3 [878 kB] Fetched 878 kB in 0s (61.6 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-3_all.deb' to '/srv/rebuilderd/tmp/tmpn2u4lp16/automake_1.18.1-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libfmt10 ppc64el 10.1.1+ds1-4 [128 kB] Fetched 128 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplpnlkuj3/libfmt10_10.1.1+ds1-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmagickcore-7.q16-10 ppc64el 8:7.1.2.12+dfsg1-1 [1907 kB] Fetched 1907 kB in 0s (76.9 MB/s) dpkg-name: info: moved 'libmagickcore-7.q16-10_8%3a7.1.2.12+dfsg1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp89_l01hq/libmagickcore-7.q16-10_7.1.2.12+dfsg1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpcre2-16-0 ppc64el 10.46-1 [271 kB] Fetched 271 kB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa6annvxq/libpcre2-16-0_10.46-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el rapidjson-dev all 1.1.0+dfsg2-7.6 [98.2 kB] Fetched 98.2 kB in 0s (8058 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd_86a6m0/rapidjson-dev_1.1.0+dfsg2-7.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el liblerc4 ppc64el 4.0.0+ds-5 [201 kB] Fetched 201 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpul479_rg/liblerc4_4.0.0+ds-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libkeyutils1 ppc64el 1.6.3-6 [10.7 kB] Fetched 10.7 kB in 0s (1007 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6y6q_bku/libkeyutils1_1.6.3-6_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el openssl-provider-legacy ppc64el 3.5.4-1 [310 kB] Fetched 310 kB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf5folrz5/openssl-provider-legacy_3.5.4-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el g++ ppc64el 4:15.2.0-4 [1336 B] Fetched 1336 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a15.2.0-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpf8ffasmu/g++_15.2.0-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el dh-autoreconf all 21 [12.2 kB] Fetched 12.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcnnkcoma/dh-autoreconf_21_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el coreutils ppc64el 9.7-3 [3042 kB] Fetched 3042 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy5i2zjo6/coreutils_9.7-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-program-options-dev ppc64el 1.83.0.2+b2 [3612 B] Fetched 3612 B in 0s (355 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt69i967a/libboost-program-options-dev_1.83.0.2+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpython3-dev ppc64el 3.13.9-3 [10.8 kB] Fetched 10.8 kB in 0s (1033 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvedop3nu/libpython3-dev_3.13.9-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmagickwand-7.q16-10 ppc64el 8:7.1.2.12+dfsg1-1 [289 kB] Fetched 289 kB in 0s (23.4 MB/s) dpkg-name: info: moved 'libmagickwand-7.q16-10_8%3a7.1.2.12+dfsg1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpq7alv1fk/libmagickwand-7.q16-10_7.1.2.12+dfsg1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpkgconf3 ppc64el 1.8.1-4 [39.4 kB] Fetched 39.4 kB in 0s (3316 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeojnbs42/libpkgconf3_1.8.1-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libtinfo6 ppc64el 6.6+20251231-1 [363 kB] Fetched 363 kB in 0s (32.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxa1w3t7v/libtinfo6_6.6+20251231-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libz3-dev ppc64el 4.13.3-1 [107 kB] Fetched 107 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjrv2pazc/libz3-dev_4.13.3-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libtasn1-6 ppc64el 4.20.0-2 [53.4 kB] Fetched 53.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4xstt5ni/libtasn1-6_4.20.0-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el make ppc64el 4.4.1-3 [470 kB] Fetched 470 kB in 0s (46.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkhh0xegd/make_4.4.1-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-chrono1.83.0t64 ppc64el 1.83.0-5+b1 [241 kB] Fetched 241 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp47l_mmz4/libboost-chrono1.83.0t64_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libeigen3-dev all 3.4.0-5 [1034 kB] Fetched 1034 kB in 0s (55.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppris5e4p/libeigen3-dev_3.4.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libx11-data all 2:1.8.12-1 [343 kB] Fetched 343 kB in 0s (32.0 MB/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.12-1_all.deb' to '/srv/rebuilderd/tmp/tmp_nznz9y5/libx11-data_1.8.12-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpq5 ppc64el 18.1-2 [263 kB] Fetched 263 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68q2wdpg/libpq5_18.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-pytest all 9.0.2-2 [275 kB] Fetched 275 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnzia8t4b/python3-pytest_9.0.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libthai-data all 0.1.30-1 [172 kB] Fetched 172 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp070tcqx0/libthai-data_0.1.30-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxcb1-dev ppc64el 1.17.0-2+b1 [186 kB] Fetched 186 kB in 0s (15.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2vjml_4/libxcb1-dev_1.17.0-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-11 [749 kB] Fetched 749 kB in 0s (67.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyj4v06p_/libdb5.3t64_5.3.28+dfsg2-11_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgc1 ppc64el 1:8.2.10-1 [257 kB] Fetched 257 kB in 0s (23.9 MB/s) dpkg-name: info: moved 'libgc1_1%3a8.2.10-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp_e0g4fop/libgc1_8.2.10-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmaeparser-dev ppc64el 1.3.3-3 [13.5 kB] Fetched 13.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpya2r76ds/libmaeparser-dev_1.3.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmpfi0 ppc64el 1.5.4+ds-4 [38.6 kB] Fetched 38.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbghzoky5/libmpfi0_1.5.4+ds-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-linkify-it all 2.0.3-1 [18.7 kB] Fetched 18.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3m9id6mf/python3-linkify-it_2.0.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpng-dev ppc64el 1.6.53-1 [382 kB] Fetched 382 kB in 0s (36.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxmii784o/libpng-dev_1.6.53-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3.13 ppc64el 3.13.11-1+b1 [770 kB] Fetched 770 kB in 0s (71.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdh66qrj7/python3.13_3.13.11-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el texlive-latex-base all 2025.20251127-1 [1327 kB] Fetched 1327 kB in 0s (94.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpah0bjhz4/texlive-latex-base_2025.20251127-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libtiff6 ppc64el 4.7.1-1 [369 kB] Fetched 369 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe67_bpnb/libtiff6_4.7.1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libc6 ppc64el 2.42-7 [1700 kB] Fetched 1700 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph_0cxfqd/libc6_2.42-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el imagemagick ppc64el 8:7.1.2.12+dfsg1-1 [22.4 kB] Fetched 22.4 kB in 0s (1974 kB/s) dpkg-name: info: moved 'imagemagick_8%3a7.1.2.12+dfsg1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpd97bek7m/imagemagick_7.1.2.12+dfsg1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el dh-python all 7.20251231 [119 kB] Fetched 119 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu_f2dgal/dh-python_7.20251231_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libfontbox-java all 1:1.8.16-5 [211 kB] Fetched 211 kB in 0s (0 B/s) dpkg-name: info: moved 'libfontbox-java_1%3a1.8.16-5_all.deb' to '/srv/rebuilderd/tmp/tmp_urqdnwk/libfontbox-java_1.8.16-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el ncurses-base all 6.6+20251231-1 [277 kB] Fetched 277 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgp9rh5dx/ncurses-base_6.6+20251231-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-iostreams1.83-dev ppc64el 1.83.0-5+b1 [262 kB] Fetched 262 kB in 0s (21.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7upx754n/libboost-iostreams1.83-dev_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpq-dev ppc64el 18.1-2 [180 kB] Fetched 180 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp04js58f1/libpq-dev_18.1-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el texlive-latex-extra all 2025.20251127-2 [32.9 MB] Fetched 32.9 MB in 0s (153 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy2799uiu/texlive-latex-extra_2025.20251127-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libdatrie1 ppc64el 0.2.14-1 [41.7 kB] Fetched 41.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6l0mq6xr/libdatrie1_0.2.14-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgdk-pixbuf-2.0-0 ppc64el 2.44.4+dfsg-1 [154 kB] Fetched 154 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpanhdv4nv/libgdk-pixbuf-2.0-0_2.44.4+dfsg-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcom-err2 ppc64el 1.47.2-3+b8 [25.3 kB] Fetched 25.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprzyg33ja/libcom-err2_1.47.2-3+b8_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:15.2.0-4 [1208 B] Fetched 1208 B in 0s (0 B/s) dpkg-name: info: moved 'g++-powerpc64le-linux-gnu_4%3a15.2.0-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpa23mb_j0/g++-powerpc64le-linux-gnu_15.2.0-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el texlive-binaries ppc64el 2025.20250727.75242+ds-5 [8374 kB] Fetched 8374 kB in 0s (152 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3qnv_bdt/texlive-binaries_2025.20250727.75242+ds-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxcb-shm0 ppc64el 1.17.0-2+b1 [106 kB] Fetched 106 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp631eujac/libxcb-shm0_1.17.0-2+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el imagemagick-7-common all 8:7.1.2.12+dfsg1-1 [69.8 kB] Fetched 69.8 kB in 0s (0 B/s) dpkg-name: info: moved 'imagemagick-7-common_8%3a7.1.2.12+dfsg1-1_all.deb' to '/srv/rebuilderd/tmp/tmpkqmvbd6o/imagemagick-7-common_7.1.2.12+dfsg1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsframe2 ppc64el 2.45.50.20251209-1 [82.0 kB] Fetched 82.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpse49kuxi/libsframe2_2.45.50.20251209-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libtexlua53-5 ppc64el 2025.20250727.75242+ds-5 [125 kB] Fetched 125 kB in 0s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoyv5ulhi/libtexlua53-5_2025.20250727.75242+ds-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libc-gconv-modules-extra ppc64el 2.42-7 [1151 kB] Fetched 1151 kB in 0s (70.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp74b6fgur/libc-gconv-modules-extra_2.42-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el postgresql-common-dev all 287 [73.3 kB] Fetched 73.3 kB in 0s (7130 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbyu0cpn_/postgresql-common-dev_287_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-system1.83.0 ppc64el 1.83.0-5+b1 [231 kB] Fetched 231 kB in 0s (20.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprjkw04v0/libboost-system1.83.0_1.83.0-5+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.5.1-1 [106 kB] Fetched 106 kB in 0s (10.3 MB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp5h382kje/libcrypt1_4.5.1-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libc6-dev ppc64el 2.42-7 [1932 kB] Fetched 1932 kB in 0s (86.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwfcivfdk/libc6-dev_2.42-7_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpam-modules-bin ppc64el 1.7.0-5 [52.5 kB] Fetched 52.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaprinq8r/libpam-modules-bin_1.7.0-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-pluggy all 1.6.0-2 [27.2 kB] Fetched 27.2 kB in 0s (2656 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfczq6fqn/python3-pluggy_1.6.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpfm4 ppc64el 4.13.0+git106-g3e4031b-1 [159 kB] Fetched 159 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgmp8yk7z/libpfm4_4.13.0+git106-g3e4031b-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-idna all 3.10-1 [42.0 kB] Fetched 42.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxqe2aqie/python3-idna_3.10-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el texlive-fonts-recommended all 2025.20251127-1 [4992 kB] Fetched 4992 kB in 0s (126 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7trqane5/texlive-fonts-recommended_2025.20251127-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el liblsan0 ppc64el 15.2.0-12 [1254 kB] Fetched 1254 kB in 0s (78.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzvox06z4/liblsan0_15.2.0-12_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libcairo-script-interpreter2 ppc64el 1.18.4-3 [66.8 kB] Fetched 66.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcc4qhq_w/libcairo-script-interpreter2_1.18.4-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpcre2-posix3 ppc64el 10.46-1 [64.3 kB] Fetched 64.3 kB in 0s (6145 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw049ucq6/libpcre2-posix3_10.46-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5iy8x576/autotools-dev_20240727.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libio-pty-perl ppc64el 1:1.20-1+b2 [34.7 kB] Fetched 34.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libio-pty-perl_1%3a1.20-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp3qan49f7/libio-pty-perl_1.20-1+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-pil ppc64el 12.0.0-1+b1 [574 kB] Fetched 574 kB in 0s (36.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplew2ghgs/python3-pil_12.0.0-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el diffutils ppc64el 1:3.12-1 [413 kB] Fetched 413 kB in 0s (36.9 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp7u82rlxp/diffutils_3.12-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el x11-common all 1:7.7+26 [217 kB] Fetched 217 kB in 0s (19.3 MB/s) dpkg-name: info: moved 'x11-common_1%3a7.7+26_all.deb' to '/srv/rebuilderd/tmp/tmpxv8suzwd/x11-common_7.7+26_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el base-passwd ppc64el 3.6.8 [55.8 kB] Fetched 55.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps0am0s0_/base-passwd_3.6.8_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libaudit1 ppc64el 1:4.1.2-1+b1 [62.6 kB] Fetched 62.6 kB in 0s (6233 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpebxd7b_o/libaudit1_4.1.2-1+b1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-minimal ppc64el 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbij57oy9/python3-minimal_3.13.9-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxpm4 ppc64el 1:3.5.17-1+b3 [60.8 kB] Fetched 60.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libxpm4_1%3a3.5.17-1+b3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmptlfg1jj6/libxpm4_3.5.17-1+b3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libptexenc1 ppc64el 2025.20250727.75242+ds-5 [55.3 kB] Fetched 55.3 kB in 0s (5510 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0j0lvw6u/libptexenc1_2025.20250727.75242+ds-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el docutils-common all 0.22.4+dfsg-1 [128 kB] Fetched 128 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpepukoc6t/docutils-common_0.22.4+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el login.defs all 1:4.19.0-4 [211 kB] Fetched 211 kB in 0s (0 B/s) dpkg-name: info: moved 'login.defs_1%3a4.19.0-4_all.deb' to '/srv/rebuilderd/tmp/tmpv5gy8jsy/login.defs_4.19.0-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libgav1-2 ppc64el 0.20.0-2 [382 kB] Fetched 382 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp996s_c44/libgav1-2_0.20.0-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfsrk93f3/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxau-dev ppc64el 1:1.0.11-1 [24.3 kB] Fetched 24.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libxau-dev_1%3a1.0.11-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphy1cn0o9/libxau-dev_1.0.11-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libreadline8t64 ppc64el 8.3-3 [190 kB] Fetched 190 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6wr8zbmc/libreadline8t64_8.3-3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el debianutils ppc64el 5.23.2 [93.3 kB] Fetched 93.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp464k28z3/debianutils_5.23.2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libexpat1 ppc64el 2.7.3-1 [107 kB] Fetched 107 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcfxv5h28/libexpat1_2.7.3-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libisl23 ppc64el 0.27-1 [733 kB] Fetched 733 kB in 0s (51.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph853_8n2/libisl23_0.27-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libjpeg62-turbo ppc64el 1:2.1.5-4 [186 kB] Fetched 186 kB in 0s (18.2 MB/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp9yl7p78v/libjpeg62-turbo_2.1.5-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libpdfbox-java all 1:1.8.16-5 [5527 kB] Fetched 5527 kB in 0s (119 MB/s) dpkg-name: info: moved 'libpdfbox-java_1%3a1.8.16-5_all.deb' to '/srv/rebuilderd/tmp/tmp0u6ky834/libpdfbox-java_1.8.16-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libbinutils ppc64el 2.45.50.20251209-1 [623 kB] Fetched 623 kB in 0s (57.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3lpjnuc2/libbinutils_2.45.50.20251209-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsepol2 ppc64el 3.9-2 [317 kB] Fetched 317 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoalkjq03/libsepol2_3.9-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnxqr6qik/po-debconf_1.0.22_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el shared-mime-info ppc64el 2.4-5+b3 [761 kB] Fetched 761 kB in 0s (68.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkw2hz7ly/shared-mime-info_2.4-5+b3_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-babel all 2.17.0-2 [117 kB] Fetched 117 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0tn0und4/python3-babel_2.17.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2xje25pr/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libxrender-dev ppc64el 1:0.9.12-1 [40.9 kB] Fetched 40.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxrender-dev_1%3a0.9.12-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpolz1yq86/libxrender-dev_0.9.12-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libboost-dev ppc64el 1.83.0.2+b2 [3840 B] Fetched 3840 B in 0s (377 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpggziockb/libboost-dev_1.83.0.2+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el readline-common all 8.3-3 [74.8 kB] Fetched 74.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzvcgm73q/readline-common_8.3-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el librhash1 ppc64el 1.4.6-1.1 [139 kB] Fetched 139 kB in 0s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6cja_4kk/librhash1_1.4.6-1.1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el postgresql-common all 287 [112 kB] Fetched 112 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo162haaz/postgresql-common_287_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libkpathsea6 ppc64el 2025.20250727.75242+ds-5 [162 kB] Fetched 162 kB in 0s (15.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_sdyhyek/libkpathsea6_2025.20250727.75242+ds-5_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-10 [21.7 kB] Fetched 21.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptywf4ml0/libsasl2-modules-db_2.1.28+dfsg1-10_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libtsan2 ppc64el 15.2.0-12 [2457 kB] Fetched 2457 kB in 0s (119 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj5adhc9q/libtsan2_15.2.0-12_ppc64el.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_ppc64el.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_ppc64el.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp7_632cu_/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture ppc64el is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.r0zqM83KTR as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.r0zqM83KTR 127.0.0.1 - - [15/Jan/2026 03:29:16] code 404, message File not found 127.0.0.1 - - [15/Jan/2026 03:29:16] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33335 ./ InRelease 127.0.0.1 - - [15/Jan/2026 03:29:16] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:33335 ./ Release [462 B] 127.0.0.1 - - [15/Jan/2026 03:29:16] code 404, message File not found 127.0.0.1 - - [15/Jan/2026 03:29:16] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33335 ./ Release.gpg 127.0.0.1 - - [15/Jan/2026 03:29:16] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:33335 ./ Packages [786 kB] Fetched 786 kB in 0s (31.3 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./gcc-15-base_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libc-gconv-modules-extra_2.42-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libc6_2.42-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libgcc-s1_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./mawk_1.3.4.20250131-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./base-files_14_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libtinfo6_6.6%2b20251231-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./debianutils_5.23.2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./bash_5.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libacl1_2.3.2-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libattr1_2.5.2-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libcap2_2.75-10%2bb5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libgmp10_6.3.0%2bdfsg-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libpcre2-8-0_10.46-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libselinux1_3.9-4%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libzstd1_1.5.7%2bdfsg-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libssl3t64_3.5.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./openssl-provider-legacy_3.5.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libsystemd0_259-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./coreutils_9.7-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./dash_0.5.12-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./diffutils_3.12-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libbz2-1.0_1.0.8-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./liblzma5_5.8.2-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libmd0_1.1.0-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./tar_1.35%2bdfsg-3.1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./dpkg_1.23.3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./findutils_4.10.0-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./grep_3.12-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./gzip_1.13-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./hostname_3.25_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./ncurses-bin_6.6%2b20251231-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libcrypt1_4.5.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./perl-base_5.40.1-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./sed_4.9-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libcap-ng0_0.8.5-4%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libaudit1_4.1.2-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libdb5.3t64_5.3.28%2bdfsg2-11_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./debconf_1.5.91_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libpam0g_1.7.0-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libpam-modules-bin_1.7.0-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libpam-modules_1.7.0-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libblkid1_2.41.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libmount1_2.41.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libsmartcols1_2.41.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libudev1_259-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libuuid1_2.41.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./util-linux_2.41.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libdebconfclient0_0.282%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./base-passwd_3.6.8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./libc-bin_2.42-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./ncurses-base_6.6%2b20251231-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:17] "GET /./sysvinit-utils_3.15-6_ppc64el.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.r0zqM83KTR 127.0.0.1 - - [15/Jan/2026 03:29:19] code 404, message File not found 127.0.0.1 - - [15/Jan/2026 03:29:19] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33335 ./ InRelease 127.0.0.1 - - [15/Jan/2026 03:29:19] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:33335 ./ Release 127.0.0.1 - - [15/Jan/2026 03:29:19] code 404, message File not found 127.0.0.1 - - [15/Jan/2026 03:29:19] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33335 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.r0zqM83KTR usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./m4_1.4.20-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./flex_2.6.4-8.2%2bb4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libexpat1_2.7.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libgomp1_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libfftw3-double3_3.3.10-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libbrotli1_1.1.0-2%2bb9_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libpng16-16t64_1.6.53-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libfreetype6_2.14.1%2bdfsg-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./fonts-dejavu-mono_2.37-8_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./fonts-dejavu-core_2.37-8_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./fontconfig-config_2.17.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libfontconfig1_2.17.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libsharpyuv0_1.5.0-0.1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libstdc%2b%2b6_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libdav1d7_1.5.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libheif-plugin-dav1d_1.20.2-2%2bb4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libde265-0_1.0.16-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libheif-plugin-libde265_1.20.2-2%2bb4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libheif1_1.20.2-2%2bb4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libjbig0_2.1-6.1%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libjpeg62-turbo_2.1.5-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./liblcms2-2_2.17-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libatomic1_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libffi8_3.5.2-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libglib2.0-0t64_2.86.3-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./liblqr-1-0_0.4.2-2.2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libltdl7_2.5.4-9_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libopenjp2-7_2.5.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libraw23t64_0.21.5b-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libdeflate0_1.23-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./liblerc4_4.0.0%2bds-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libwebp7_1.5.0-0.1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libtiff6_4.7.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libwebpdemux2_1.5.0-0.1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libwebpmux3_1.5.0-0.1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libxau6_1.0.11-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libxdmcp6_1.1.5-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libxcb1_1.17.0-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libx11-data_1.8.12-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libx11-6_1.8.12-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libxext6_1.3.4-1%2bb3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libxml2-16_2.15.1%2bdfsg-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./imagemagick-7-common_7.1.2.12%2bdfsg1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libmagickcore-7.q16-10_7.1.2.12%2bdfsg1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libmagickwand-7.q16-10_7.1.2.12%2bdfsg1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./login.defs_4.19.0-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libbsd0_0.12.2-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libsemanage-common_3.9-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libsepol2_3.9-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libsemanage2_3.9-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./passwd_4.19.0-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./adduser_3.154_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./perl-modules-5.40_5.40.1-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libgdbm6t64_1.26-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libgdbm-compat4t64_1.26-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libperl5.40_5.40.1-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./perl_5.40.1-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libjson-perl_4.10000-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./netbase_6.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./postgresql-client-common_287_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./openssl_3.5.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./ssl-cert_1.1.3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libtext-charwidth-perl_0.04-11%2bb4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libtext-wrapi18n-perl_0.06-10_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libncursesw6_6.6%2b20251231-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libproc2-0_4.0.4-9_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./procps_4.0.4-9_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./sensible-utils_0.0.26_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./ucf_3.0052_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./postgresql-common_287_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./libpython3.13-minimal_3.13.11-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:27] "GET /./python3.13-minimal_3.13.11-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./python3-minimal_3.13.9-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./media-types_14.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./tzdata_2025c-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./readline-common_8.3-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libreadline8t64_8.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libsqlite3-0_3.46.1-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libpython3.13-stdlib_3.13.11-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./python3.13_3.13.11-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libpython3-stdlib_3.13.9-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./python3_3.13.9-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./python3-numpy-dev_2.3.5%2bds-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libblas3_3.12.1-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libgfortran5_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./liblapack3_3.12.1-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./python3-numpy_2.3.5%2bds-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libuchardet0_0.0.8-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./groff-base_1.23.0-10_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./bsdextrautils_2.41.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libpipeline1_1.5.8-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libseccomp2_2.6.0-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./man-db_2.13.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./bzip2_1.0.8-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./ca-certificates_20250419_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libmagic-mgc_5.46-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libmagic1t64_5.46-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./file_5.46-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./gettext-base_0.23.2-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./xz-utils_5.8.2-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./architecture-properties_0.2.6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./autoconf_2.72-3.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./autotools-dev_20240727.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./automake_1.18.1-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./autopoint_0.23.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./binutils-common_2.45.50.20251209-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libsframe2_2.45.50.20251209-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libbinutils_2.45.50.20251209-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libctf-nobfd0_2.45.50.20251209-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libctf0_2.45.50.20251209-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libjansson4_2.14-2%2bb4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./binutils-powerpc64le-linux-gnu_2.45.50.20251209-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./binutils_2.45.50.20251209-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./bison_3.8.2%2bdfsg-1%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libc-dev-bin_2.42-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./linux-libc-dev_6.18.3-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./rpcsvc-proto_1.4.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libc6-dev_2.42-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libisl23_0.27-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libmpfr6_4.2.2-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libmpc3_1.3.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./cpp-15-powerpc64le-linux-gnu_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./cpp-15_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./cpp-powerpc64le-linux-gnu_15.2.0-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./cpp_15.2.0-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libcc1-0_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libitm1_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libasan8_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./liblsan0_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libtsan2_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libubsan1_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libquadmath0_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libgcc-15-dev_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./gcc-15-powerpc64le-linux-gnu_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./gcc-15_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./gcc-powerpc64le-linux-gnu_15.2.0-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./gcc_15.2.0-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libstdc%2b%2b-15-dev_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./g%2b%2b-15-powerpc64le-linux-gnu_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./g%2b%2b-15_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./g%2b%2b-powerpc64le-linux-gnu_15.2.0-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./g%2b%2b_15.2.0-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./make_4.4.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libdpkg-perl_1.23.3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./patch_2.8-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./dpkg-dev_1.23.3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./build-essential_12.12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libcatch2-dev_3.7.1-0.6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./catch2_3.7.1-0.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libedit2_3.1-20251016-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libz3-4_4.13.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:28] "GET /./libllvm21_21.1.8-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libclang-cpp21_21.1.8-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libgc1_8.2.10-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libobjc4_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libobjc-15-dev_15.2.0-12_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libclang-common-21-dev_21.1.8-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./llvm-21-linker-tools_21.1.8-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libclang1-21_21.1.8-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./clang-21_21.1.8-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./cmake-data_4.2.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libxxhash0_0.8.3-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./liblz4-1_1.10.0-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libnettle8t64_3.10.2-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libarchive13t64_3.8.5-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libnghttp3-9_1.12.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libngtcp2-16_1.16.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libkrb5support0_1.22.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libcom-err2_1.47.2-3%2bb8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libk5crypto3_1.22.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libkeyutils1_1.6.3-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libkrb5-3_1.22.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libgssapi-krb5-2_1.22.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libunistring5_1.3-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libidn2-0_2.3.8-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libsasl2-modules-db_2.1.28%2bdfsg1-10_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libsasl2-2_2.1.28%2bdfsg1-10_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libldap2_2.6.10%2bdfsg-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libnghttp2-14_1.64.0-1.1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libngtcp2-crypto-ossl0_1.16.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libpsl5t64_0.21.2-1.1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libhogweed6t64_3.10.2-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libp11-kit0_0.25.10-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libtasn1-6_4.20.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libgnutls30t64_3.8.11-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./librtmp1_2.4%2b20151223.gitfa8646d.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libssh2-1t64_1.11.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libcurl4t64_8.18.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libjsoncpp26_1.9.6-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./librhash1_1.4.6-1.1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libuv1t64_1.51.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./cmake_4.2.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libdebhelper-perl_13.29_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libtool_2.5.4-9_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./dh-autoreconf_21_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libarchive-zip-perl_1.68-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libfile-stripnondeterminism-perl_1.15.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./dh-strip-nondeterminism_1.15.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libelf1t64_0.194-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./dwz_0.16-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./gettext_0.23.2-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./intltool-debian_0.35.0%2b20060710.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./po-debconf_1.0.22_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./debhelper_13.29_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libpixman-1-0_0.46.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libxcb-render0_1.17.0-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libxcb-shm0_1.17.0-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libxrender1_0.9.12-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libcairo2_1.18.4-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libgraphite2-3_1.3.14-11_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libharfbuzz0b_12.3.0-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./fontconfig_2.17.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libfribidi0_1.0.16-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libthai-data_0.1.30-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libdatrie1_0.2.14-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libthai0_0.1.30-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libpango-1.0-0_1.57.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libpangoft2-1.0-0_1.57.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libpangocairo-1.0-0_1.57.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libfmt10_10.1.1%2bds1-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libspdlog1.15_1.15.3%2bds-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libxapian30_1.4.29-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./doxygen_1.15.0%2bds1-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./python3-markupsafe_3.0.3-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libncurses6_6.6%2b20251231-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libncurses-dev_6.6%2b20251231-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./tex-common_6.20_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libpaper2_2.2.5-0.3%2bb3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libpaper-utils_2.2.5-0.3%2bb3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libkpathsea6_2025.20250727.75242%2bds-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libptexenc1_2025.20250727.75242%2bds-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libsynctex2_2025.20250727.75242%2bds-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libtexlua53-5_2025.20250727.75242%2bds-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./t1utils_1.41-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libicu76_76.1-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libmpfi0_1.5.4%2bds-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libpotrace0_1.16-2%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libteckit0_2.5.13%2bds-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./x11-common_7.7%2b26_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libice6_1.1.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libsm6_1.2.6-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libxt6t64_1.2.1-1.3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libxmu6_1.1.3-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libxpm4_3.5.17-1%2bb3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libxaw7_1.0.16-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libxi6_1.8.2-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./libzzip-0-13t64_0.13.78%2bdfsg.1-0.2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./texlive-binaries_2025.20250727.75242%2bds-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./xdg-utils_1.2.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:29] "GET /./texlive-base_2025.20251127-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./fonts-lmodern_2.005-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./libfontenc1_1.1.8-1%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./xfonts-encodings_1.0.4-2.2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./xfonts-utils_7.7%2b7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./lmodern_2.005-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./texlive-luatex_2025.20251127-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./texlive-latex-base_2025.20251127-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./texlive-latex-recommended_2025.20251127-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./texlive-pictures_2025.20251127-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./native-architecture_0.2.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./libgirepository-2.0-0_2.86.3-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./girepository-tools_2.86.3-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./libabsl20240722_20240722.0-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./libboost-serialization1.83.0_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./liblzo2-2_2.10-3%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./liblzma-dev_5.8.2-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./zlib1g-dev_1.3.dfsg%2breally1.3.1-1%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:30] "GET /./libxml2-dev_2.15.1%2bdfsg-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-urllib3_2.5.0-1.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./xorg-sgml-doctools_1.11-1.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpython3.13_3.13.11-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libexpat1-dev_2.7.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpython3.13-dev_3.13.11-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpython3-dev_3.13.9-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3.13-dev_3.13.11-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libjs-sphinxdoc_8.2.3-12_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-dev_3.13.9-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-iostreams1.83.0_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libmaeparser1_1.3.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./preview-latex-style_13.2-1.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libffi-dev_3.5.2-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./uuid-dev_2.41.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libblkid-dev_2.41.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libsepol-dev_3.9-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpcre2-16-0_10.46-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpcre2-32-0_10.46-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpcre2-posix3_10.46-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpcre2-dev_10.46-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libselinux-dev_3.9-4%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libmount-dev_2.41.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libsysprof-capture-4-dev_49.0-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpkgconf3_1.8.1-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./pkgconf-bin_1.8.1-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./pkgconf_1.8.1-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libgio-2.0-dev_2.86.3-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libglib2.0-data_2.86.3-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libglib2.0-bin_2.86.3-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-packaging_25.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libgio-2.0-dev-bin_2.86.3-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libglib2.0-dev-bin_2.86.3-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libglib2.0-dev_2.86.3-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-uc-micro_1.0.3-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libapache-pom-java_33-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libcommons-parent-java_56-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libcommons-logging-java_1.3.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-python1.83.0_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-regex1.83.0_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libyaml-0-2_0.2.5-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./x11proto-dev_2024.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libxau-dev_1.0.11-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libxdmcp-dev_1.1.5-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./xtrans-dev_1.6.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libxcb1-dev_1.17.0-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libx11-dev_1.8.12-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libbrotli-dev_1.1.0-2%2bb9_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./librav1e0.8_0.8.1-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpq5_18.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./postgresql-client-18_18.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-certifi_2026.1.4%2bds-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-charset-normalizer_3.4.4-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-idna_3.10-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-chardet_5.2.0%2bdfsg-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-requests_2.32.5%2bdfsg-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./llvm-21-runtime_21.1.8-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpfm4_4.13.0%2bgit106-g3e4031b-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./llvm-21_21.1.8-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./sgml-base_1.31%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./xml-core_0.19_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./docutils-common_0.22.4%2bdfsg-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-roman-numerals_4.1.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-docutils_0.22.4%2bdfsg-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-jinja2_3.1.6-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-mdurl_0.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-linkify-it_2.0.3-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-markdown-it_3.0.0-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-mdit-py-plugins_0.5.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-defusedxml_0.7.1-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./sphinx-common_8.2.3-12_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-alabaster_0.7.16-0.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python-babel-localedata_2.17.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-babel_2.17.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-imagesize_1.4.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-pygments_2.19.2%2bdfsg-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-snowballstemmer_3.0.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-sphinx_8.2.3-12_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-yaml_6.0.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-myst-parser_4.0.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./pandoc-data_3.1.11.1-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-numpy1.83.0_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-numpy1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-numpy-dev_1.83.0.2%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-program-options1.83.0_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-program-options1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-serialization1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libbz2-dev_1.0.8-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libpng-dev_1.6.53-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libfreetype-dev_2.14.1%2bdfsg-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libfontconfig-dev_2.17.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-dateutil_2.9.0-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-atomic1.83.0_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-atomic1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-system1.83.0_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-system1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-chrono1.83.0t64_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-chrono1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-date-time1.83.0_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-date-time1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-thread1.83.0_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-thread1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./latexmk_4.87%7eds-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./icu-devtools_76.1-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-pytz_2025.2-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-pandas-lib_2.3.3%2bdfsg-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-pandas_2.3.3%2bdfsg-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libicu-dev_76.1-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-regex1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-regex-dev_1.83.0.2%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-python1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libboost-python-dev_1.83.0.2%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libxcb-render0-dev_1.17.0-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libssl-dev_3.5.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-iniconfig_2.1.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libcairo-gobject2_1.18.4-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libinchi1.07_1.07.3%2bdfsg-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libinchi-dev_1.07.3%2bdfsg-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libice-dev_1.1.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libsm-dev_1.2.6-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libyuv0_0.0.1922.20260106-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libraqm0_0.10.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libio-pty-perl_1.20-1%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libipc-run-perl_20250809.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-greenlet_3.2.4-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-commonmark_0.9.1-8_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./python3-recommonmark_0.7.1%2bds-8_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libsqlite3-dev_3.46.1-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./liblua5.4-0_5.4.8-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./libnuma1_2.0.19-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:31] "GET /./pandoc_3.1.11.1%2bds-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libboost-thread-dev_1.83.0.2%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libxext-dev_1.3.4-1%2bb3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libaom3_3.13.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libgav1-2_0.20.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libsvtav1enc2_2.3.0%2bdfsg-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libavif16_1.3.0-1%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./tex-gyre_20180621-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./hicolor-icon-theme_0.18-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./imagemagick-7.q16_7.1.2.12%2bdfsg1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libcairo-script-interpreter2_1.18.4-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libpixman-1-dev_0.46.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libxcb-shm0-dev_1.17.0-2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libxrender-dev_0.9.12-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libcairo2-dev_1.18.4-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libimagequant0_4.4.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./postgresql-common-dev_287_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libpq-dev_18.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./llvm-21-tools_21.1.8-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./libz3-dev_4.13.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:32] "GET /./llvm-21-dev_21.1.8-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./postgresql-server-dev-18_18.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./postgresql-server-dev-all_287_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libboost-system-dev_1.83.0.2%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libgdk-pixbuf2.0-common_2.44.4%2bdfsg-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./shared-mime-info_2.4-5%2bb3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libgdk-pixbuf-2.0-0_2.44.4%2bdfsg-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./librsvg2-2_2.61.3%2bdfsg-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./librsvg2-bin_2.61.3%2bdfsg-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./python3-typing-extensions_4.15.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./python3-sqlalchemy_2.0.45%2bds1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libboost-iostreams1.83-dev_1.83.0-5%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libboost-iostreams-dev_1.83.0.2%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libcoordgen3_3.0.2-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libcoordgen-dev_3.0.2-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./rapidjson-dev_1.1.0%2bdfsg2-7.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libboost-program-options-dev_1.83.0.2%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libeigen3-dev_3.4.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./python3-pluggy_1.6.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./python3-pytest_9.0.2-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libmaeparser-dev_1.3.3-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./imagemagick_7.1.2.12%2bdfsg1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./dh-python_7.20251231_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libfontbox-java_1.8.16-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libpdfbox-java_1.8.16-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./texlive-latex-extra_2025.20251127-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./texlive-fonts-recommended_2025.20251127-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./python3-pil_12.0.0-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./libboost-dev_1.83.0.2%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jan/2026 03:29:33] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp7_632cu_/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.r0zqM83KTR Reading package lists... Building dependency tree... Reading state information... dpkg is already the newest version (1.23.3). libpangocairo-1.0-0 is already the newest version (1.57.0-1). libpangocairo-1.0-0 set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). libselinux1 is already the newest version (3.9-4+b1). libp11-kit0 is already the newest version (0.25.10-1). libp11-kit0 set to manually installed. doxygen is already the newest version (1.15.0+ds1-1+b1). doxygen set to manually installed. python3-markupsafe is already the newest version (3.0.3-1+b1). python3-markupsafe set to manually installed. postgresql-client-common is already the newest version (287). postgresql-client-common set to manually installed. ca-certificates is already the newest version (20250419). ca-certificates set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b3). libxext6 set to manually installed. libncurses-dev is already the newest version (6.6+20251231-1). libncurses-dev set to manually installed. libgomp1 is already the newest version (15.2.0-12). libgomp1 set to manually installed. texlive-pictures is already the newest version (2025.20251127-1). texlive-pictures set to manually installed. girepository-tools is already the newest version (2.86.3-4). girepository-tools set to manually installed. libabsl20240722 is already the newest version (20240722.0-4). libabsl20240722 set to manually installed. libboost-serialization1.83.0 is already the newest version (1.83.0-5+b1). libboost-serialization1.83.0 set to manually installed. liblzo2-2 is already the newest version (2.10-3+b1). liblzo2-2 set to manually installed. libxml2-dev is already the newest version (2.15.1+dfsg-2+b1). libxml2-dev set to manually installed. libgfortran5 is already the newest version (15.2.0-12). libgfortran5 set to manually installed. libblas3 is already the newest version (3.12.1-7). libblas3 set to manually installed. python3-urllib3 is already the newest version (2.5.0-1.1). python3-urllib3 set to manually installed. t1utils is already the newest version (1.41-4). t1utils set to manually installed. xorg-sgml-doctools is already the newest version (1:1.11-1.1). xorg-sgml-doctools set to manually installed. python3-dev is already the newest version (3.13.9-3). python3-dev set to manually installed. libmaeparser1 is already the newest version (1.3.3-3). libmaeparser1 set to manually installed. gcc-15-base is already the newest version (15.2.0-12). libjansson4 is already the newest version (2.14-2+b4). libjansson4 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. fonts-dejavu-core is already the newest version (2.37-8). fonts-dejavu-core set to manually installed. libgraphite2-3 is already the newest version (1.3.14-11). libgraphite2-3 set to manually installed. libjbig0 is already the newest version (2.1-6.1+b2). libjbig0 set to manually installed. preview-latex-style is already the newest version (13.2-1.1). preview-latex-style set to manually installed. liblapack3 is already the newest version (3.12.1-7). liblapack3 set to manually installed. hostname is already the newest version (3.25). libglib2.0-dev is already the newest version (2.86.3-4). libglib2.0-dev set to manually installed. libxapian30 is already the newest version (1.4.29-3). libxapian30 set to manually installed. libproc2-0 is already the newest version (2:4.0.4-9). libproc2-0 set to manually installed. libgirepository-2.0-0 is already the newest version (2.86.3-4). libgirepository-2.0-0 set to manually installed. python3-uc-micro is already the newest version (1.0.3-1). python3-uc-micro set to manually installed. libcommons-logging-java is already the newest version (1.3.0-2). libcommons-logging-java set to manually installed. cpp-15 is already the newest version (15.2.0-12). cpp-15 set to manually installed. gcc-15-powerpc64le-linux-gnu is already the newest version (15.2.0-12). gcc-15-powerpc64le-linux-gnu set to manually installed. libpcre2-dev is already the newest version (10.46-1). libpcre2-dev set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). libboost-python1.83.0 is already the newest version (1.83.0-5+b1). libboost-python1.83.0 set to manually installed. libboost-regex1.83.0 is already the newest version (1.83.0-5+b1). libboost-regex1.83.0 set to manually installed. binutils-powerpc64le-linux-gnu is already the newest version (2.45.50.20251209-1). binutils-powerpc64le-linux-gnu set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. libz3-4 is already the newest version (4.13.3-1). libz3-4 set to manually installed. libkrb5support0 is already the newest version (1.22.1-2). libkrb5support0 set to manually installed. libyaml-0-2 is already the newest version (0.2.5-2+b1). libyaml-0-2 set to manually installed. libx11-dev is already the newest version (2:1.8.12-1). libx11-dev set to manually installed. libcurl4t64 is already the newest version (8.18.0-1). libcurl4t64 set to manually installed. libattr1 is already the newest version (1:2.5.2-3). libtext-charwidth-perl is already the newest version (0.04-11+b4). libtext-charwidth-perl set to manually installed. libglib2.0-0t64 is already the newest version (2.86.3-4). libglib2.0-0t64 set to manually installed. libbrotli-dev is already the newest version (1.1.0-2+b9). libbrotli-dev set to manually installed. librav1e0.8 is already the newest version (0.8.1-7). librav1e0.8 set to manually installed. libmount1 is already the newest version (2.41.3-3). libcairo2 is already the newest version (1.18.4-3). libcairo2 set to manually installed. postgresql-client-18 is already the newest version (18.1-2). postgresql-client-18 set to manually installed. libxcb1 is already the newest version (1.17.0-2+b1). libxcb1 set to manually installed. python3-requests is already the newest version (2.32.5+dfsg-1). python3-requests set to manually installed. libxcb-render0 is already the newest version (1.17.0-2+b1). libxcb-render0 set to manually installed. python3-charset-normalizer is already the newest version (3.4.4-2). python3-charset-normalizer set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-2). libxdmcp6 set to manually installed. bash is already the newest version (5.3-1). cmake is already the newest version (4.2.1-2). cmake set to manually installed. flex is already the newest version (2.6.4-8.2+b4). flex set to manually installed. libsysprof-capture-4-dev is already the newest version (49.0-5). libsysprof-capture-4-dev set to manually installed. libgio-2.0-dev is already the newest version (2.86.3-4). libgio-2.0-dev set to manually installed. libraw23t64 is already the newest version (0.21.5b-1). libraw23t64 set to manually installed. llvm-21 is already the newest version (1:21.1.8-1+b1). llvm-21 set to manually installed. python3-myst-parser is already the newest version (4.0.1-1). python3-myst-parser set to manually installed. pandoc-data is already the newest version (3.1.11.1-3). pandoc-data set to manually installed. libboost-numpy-dev is already the newest version (1.83.0.2+b2). libboost-numpy-dev set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. libstdc++6 is already the newest version (15.2.0-12). libstdc++6 set to manually installed. dpkg-dev is already the newest version (1.23.3). dpkg-dev set to manually installed. libboost-program-options1.83-dev is already the newest version (1.83.0-5+b1). libboost-program-options1.83-dev set to manually installed. libboost-serialization1.83-dev is already the newest version (1.83.0-5+b1). libboost-serialization1.83-dev set to manually installed. libx11-6 is already the newest version (2:1.8.12-1). libx11-6 set to manually installed. passwd is already the newest version (1:4.19.0-4). passwd set to manually installed. libfontconfig-dev is already the newest version (2.17.1-3). libfontconfig-dev set to manually installed. libnettle8t64 is already the newest version (3.10.2-1). libnettle8t64 set to manually installed. python3-dateutil is already the newest version (2.9.0-4). python3-dateutil set to manually installed. libboost-atomic1.83-dev is already the newest version (1.83.0-5+b1). libboost-atomic1.83-dev set to manually installed. libclang1-21 is already the newest version (1:21.1.8-1+b1). libclang1-21 set to manually installed. libicu76 is already the newest version (76.1-4). libicu76 set to manually installed. fonts-lmodern is already the newest version (2.005-1). fonts-lmodern set to manually installed. xz-utils is already the newest version (5.8.2-1). xz-utils set to manually installed. python3.13-minimal is already the newest version (3.13.11-1+b1). python3.13-minimal set to manually installed. libmount-dev is already the newest version (2.41.3-3). libmount-dev set to manually installed. libpcre2-32-0 is already the newest version (10.46-1). libpcre2-32-0 set to manually installed. libatomic1 is already the newest version (15.2.0-12). libatomic1 set to manually installed. libboost-system1.83-dev is already the newest version (1.83.0-5+b1). libboost-system1.83-dev set to manually installed. libfreetype-dev is already the newest version (2.14.1+dfsg-2). libfreetype-dev set to manually installed. libboost-thread1.83-dev is already the newest version (1.83.0-5+b1). libboost-thread1.83-dev set to manually installed. libjs-sphinxdoc is already the newest version (8.2.3-12). libjs-sphinxdoc set to manually installed. autopoint is already the newest version (0.23.2-1). autopoint set to manually installed. libxml2-16 is already the newest version (2.15.1+dfsg-2+b1). libxml2-16 set to manually installed. m4 is already the newest version (1.4.20-2). m4 set to manually installed. python3-chardet is already the newest version (5.2.0+dfsg-2). python3-chardet set to manually installed. latexmk is already the newest version (1:4.87~ds-1). latexmk set to manually installed. libwebp7 is already the newest version (1.5.0-0.1). libwebp7 set to manually installed. libpam-modules is already the newest version (1.7.0-5). libpython3.13-dev is already the newest version (3.13.11-1+b1). libpython3.13-dev set to manually installed. icu-devtools is already the newest version (76.1-4). icu-devtools set to manually installed. libsqlite3-0 is already the newest version (3.46.1-8). libsqlite3-0 set to manually installed. libapache-pom-java is already the newest version (33-2). libapache-pom-java set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. fontconfig-config is already the newest version (2.17.1-3). fontconfig-config set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. bison is already the newest version (2:3.8.2+dfsg-1+b2). bison set to manually installed. libngtcp2-16 is already the newest version (1.16.0-1). libngtcp2-16 set to manually installed. libjsoncpp26 is already the newest version (1.9.6-5). libjsoncpp26 set to manually installed. python3-pandas is already the newest version (2.3.3+dfsg-3). python3-pandas set to manually installed. libuuid1 is already the newest version (2.41.3-3). libboost-regex-dev is already the newest version (1.83.0.2+b2). libboost-regex-dev set to manually installed. libctf-nobfd0 is already the newest version (2.45.50.20251209-1). libctf-nobfd0 set to manually installed. libboost-python-dev is already the newest version (1.83.0.2+b2). libboost-python-dev set to manually installed. libgnutls30t64 is already the newest version (3.8.11-3). libgnutls30t64 set to manually installed. libxcb-render0-dev is already the newest version (1.17.0-2+b1). libxcb-render0-dev set to manually installed. x11proto-dev is already the newest version (2024.1-1). x11proto-dev set to manually installed. libssl-dev is already the newest version (3.5.4-1). libssl-dev set to manually installed. libelf1t64 is already the newest version (0.194-1). libelf1t64 set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b2). xfonts-encodings is already the newest version (1:1.0.4-2.2). xfonts-encodings set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5). libfontenc1 is already the newest version (1:1.1.8-1+b2). libfontenc1 set to manually installed. libspdlog1.15 is already the newest version (1:1.15.3+ds-1). libspdlog1.15 set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. libxt6t64 is already the newest version (1:1.2.1-1.3). libxt6t64 set to manually installed. libboost-numpy1.83.0 is already the newest version (1.83.0-5+b1). libboost-numpy1.83.0 set to manually installed. mawk is already the newest version (1.3.4.20250131-2). libsepol-dev is already the newest version (3.9-2). libsepol-dev set to manually installed. libpangoft2-1.0-0 is already the newest version (1.57.0-1). libpangoft2-1.0-0 set to manually installed. libffi-dev is already the newest version (3.5.2-3). libffi-dev set to manually installed. libkrb5-3 is already the newest version (1.22.1-2). libkrb5-3 set to manually installed. libssl3t64 is already the newest version (3.5.4-1). findutils is already the newest version (4.10.0-3). libblkid1 is already the newest version (2.41.3-3). python3-mdurl is already the newest version (0.1.2-1). python3-mdurl set to manually installed. sphinx-common is already the newest version (8.2.3-12). sphinx-common set to manually installed. libboost-chrono1.83-dev is already the newest version (1.83.0-5+b1). libboost-chrono1.83-dev set to manually installed. libclang-cpp21 is already the newest version (1:21.1.8-1+b1). libclang-cpp21 set to manually installed. libcairo-gobject2 is already the newest version (1.18.4-3). libcairo-gobject2 set to manually installed. libarchive13t64 is already the newest version (3.8.5-1). libarchive13t64 set to manually installed. libtool is already the newest version (2.5.4-9). libtool set to manually installed. libxi6 is already the newest version (2:1.8.2-2). libxi6 set to manually installed. xdg-utils is already the newest version (1.2.1-2). xdg-utils set to manually installed. libinchi-dev is already the newest version (1.07.3+dfsg-1). libinchi-dev set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libsm-dev is already the newest version (2:1.2.6-1). libsm-dev set to manually installed. libboost-iostreams1.83.0 is already the newest version (1.83.0-5+b1). libboost-iostreams1.83.0 set to manually installed. ucf is already the newest version (3.0052). ucf set to manually installed. libk5crypto3 is already the newest version (1.22.1-2). libk5crypto3 set to manually installed. libpixman-1-0 is already the newest version (0.46.4-1). libpixman-1-0 set to manually installed. libpaper-utils is already the newest version (2.2.5-0.3+b3). libpaper-utils set to manually installed. texlive-base is already the newest version (2025.20251127-1). texlive-base set to manually installed. libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. libcatch2-dev is already the newest version (3.7.1-0.6). libcatch2-dev set to manually installed. xml-core is already the newest version (0.19). xml-core set to manually installed. g++-15-powerpc64le-linux-gnu is already the newest version (15.2.0-12). g++-15-powerpc64le-linux-gnu set to manually installed. tar is already the newest version (1.35+dfsg-3.1). libubsan1 is already the newest version (15.2.0-12). libubsan1 set to manually installed. libpipeline1 is already the newest version (1.5.8-2). libpipeline1 set to manually installed. python3-yaml is already the newest version (6.0.3-1). python3-yaml set to manually installed. libyuv0 is already the newest version (0.0.1922.20260106-1). libyuv0 set to manually installed. python3-docutils is already the newest version (0.22.4+dfsg-1). python3-docutils set to manually installed. libharfbuzz0b is already the newest version (12.3.0-4). libharfbuzz0b set to manually installed. libraqm0 is already the newest version (0.10.3-1). libraqm0 set to manually installed. libsharpyuv0 is already the newest version (1.5.0-0.1). libsharpyuv0 set to manually installed. llvm-21-runtime is already the newest version (1:21.1.8-1+b1). llvm-21-runtime set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. libedit2 is already the newest version (3.1-20251016-1). libedit2 set to manually installed. ncurses-bin is already the newest version (6.6+20251231-1). cpp is already the newest version (4:15.2.0-4). cpp set to manually installed. libpango-1.0-0 is already the newest version (1.57.0-1). libpango-1.0-0 set to manually installed. libipc-run-perl is already the newest version (20250809.0-1). libipc-run-perl set to manually installed. cpp-15-powerpc64le-linux-gnu is already the newest version (15.2.0-12). cpp-15-powerpc64le-linux-gnu set to manually installed. init-system-helpers is already the newest version (1.69). libheif-plugin-libde265 is already the newest version (1.20.2-2+b4). libheif-plugin-libde265 set to manually installed. liblzma5 is already the newest version (5.8.2-1). libpython3.13-minimal is already the newest version (3.13.11-1+b1). libpython3.13-minimal set to manually installed. libglib2.0-bin is already the newest version (2.86.3-4). libglib2.0-bin set to manually installed. libxmu6 is already the newest version (2:1.1.3-4). libxmu6 set to manually installed. python3.13-dev is already the newest version (3.13.11-1+b1). python3.13-dev set to manually installed. libboost-date-time1.83.0 is already the newest version (1.83.0-5+b1). libboost-date-time1.83.0 set to manually installed. libjson-perl is already the newest version (4.10000-1). libjson-perl set to manually installed. python3-pytz is already the newest version (2025.2-5). python3-pytz set to manually installed. catch2 is already the newest version (3.7.1-0.6). catch2 set to manually installed. libsystemd0 is already the newest version (259-1). libmpfr6 is already the newest version (4.2.2-2). libmpfr6 set to manually installed. debconf is already the newest version (1.5.91). libfftw3-double3 is already the newest version (3.3.10-2+b1). libfftw3-double3 set to manually installed. python3-greenlet is already the newest version (3.2.4-3). python3-greenlet set to manually installed. perl-base is already the newest version (5.40.1-7). libffi8 is already the newest version (3.5.2-3). libffi8 set to manually installed. python3-mdit-py-plugins is already the newest version (0.5.0-1). python3-mdit-py-plugins set to manually installed. libde265-0 is already the newest version (1.0.16-1+b1). libde265-0 set to manually installed. python3-recommonmark is already the newest version (0.7.1+ds-8). python3-recommonmark set to manually installed. libgcc-15-dev is already the newest version (15.2.0-12). libgcc-15-dev set to manually installed. libheif-plugin-dav1d is already the newest version (1.20.2-2+b4). libheif-plugin-dav1d set to manually installed. libpcre2-8-0 is already the newest version (10.46-1). binutils-common is already the newest version (2.45.50.20251209-1). binutils-common set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1). libgdbm-compat4t64 set to manually installed. libsqlite3-dev is already the newest version (3.46.1-8). libsqlite3-dev set to manually installed. libheif1 is already the newest version (1.20.2-2+b4). libheif1 set to manually installed. libc-dev-bin is already the newest version (2.42-7). libc-dev-bin set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-3). python3-defusedxml is already the newest version (0.7.1-3). python3-defusedxml set to manually installed. python3-alabaster is already the newest version (0.7.16-0.1). python3-alabaster set to manually installed. native-architecture is already the newest version (0.2.6). native-architecture set to manually installed. libpam0g is already the newest version (1.7.0-5). patch is already the newest version (2.8-2). patch set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). cpp-powerpc64le-linux-gnu is already the newest version (4:15.2.0-4). cpp-powerpc64le-linux-gnu set to manually installed. pandoc is already the newest version (3.1.11.1+ds-4). pandoc set to manually installed. libpython3.13 is already the newest version (3.13.11-1+b1). libpython3.13 set to manually installed. libclang-common-21-dev is already the newest version (1:21.1.8-1+b1). libclang-common-21-dev set to manually installed. libtext-wrapi18n-perl is already the newest version (0.06-10). libtext-wrapi18n-perl set to manually installed. python3-imagesize is already the newest version (1.4.1-1). python3-imagesize set to manually installed. linux-libc-dev is already the newest version (6.18.3-1). linux-libc-dev set to manually installed. libboost-thread-dev is already the newest version (1.83.0.2+b2). libboost-thread-dev set to manually installed. libuchardet0 is already the newest version (0.0.8-2). libuchardet0 set to manually installed. pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. gettext is already the newest version (0.23.2-1). gettext set to manually installed. libobjc-15-dev is already the newest version (15.2.0-12). libobjc-15-dev set to manually installed. autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libboost-date-time1.83-dev is already the newest version (1.83.0-5+b1). libboost-date-time1.83-dev set to manually installed. libgio-2.0-dev-bin is already the newest version (2.86.3-4). libgio-2.0-dev-bin set to manually installed. libllvm21 is already the newest version (1:21.1.8-1+b1). libllvm21 set to manually installed. libxext-dev is already the newest version (2:1.3.4-1+b3). libxext-dev set to manually installed. python3-numpy-dev is already the newest version (1:2.3.5+ds-3). python3-numpy-dev set to manually installed. gettext-base is already the newest version (0.23.2-1). gettext-base set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-3). librtmp1 set to manually installed. libcc1-0 is already the newest version (15.2.0-12). libcc1-0 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-10). libsasl2-2 set to manually installed. libnuma1 is already the newest version (2.0.19-1). libnuma1 set to manually installed. libpython3.13-stdlib is already the newest version (3.13.11-1+b1). libpython3.13-stdlib set to manually installed. python3-snowballstemmer is already the newest version (3.0.1-1). python3-snowballstemmer set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. libcap2 is already the newest version (1:2.75-10+b5). libxdmcp-dev is already the newest version (1:1.1.5-2). libxdmcp-dev set to manually installed. libglib2.0-data is already the newest version (2.86.3-4). libglib2.0-data set to manually installed. libboost1.83-dev is already the newest version (1.83.0-5+b1). libboost1.83-dev set to manually installed. texlive-luatex is already the newest version (2025.20251127-1). texlive-luatex set to manually installed. python3-sphinx is already the newest version (8.2.3-12). python3-sphinx set to manually installed. tzdata is already the newest version (2025c-3). tzdata set to manually installed. libdeflate0 is already the newest version (1.23-2). libdeflate0 set to manually installed. libbz2-dev is already the newest version (1.0.8-6). libbz2-dev set to manually installed. libpng16-16t64 is already the newest version (1.6.53-1). libpng16-16t64 set to manually installed. libavif16 is already the newest version (1.3.0-1+b2). libavif16 set to manually installed. libsemanage-common is already the newest version (3.9-1). libsemanage-common set to manually installed. libncursesw6 is already the newest version (6.6+20251231-1). libncursesw6 set to manually installed. libseccomp2 is already the newest version (2.6.0-2+b1). libseccomp2 set to manually installed. gcc is already the newest version (4:15.2.0-4). gcc set to manually installed. libc-bin is already the newest version (2.42-7). libnghttp3-9 is already the newest version (1.12.0-1). libnghttp3-9 set to manually installed. architecture-properties is already the newest version (0.2.6). architecture-properties set to manually installed. base-files is already the newest version (14). clang-21 is already the newest version (1:21.1.8-1+b1). clang-21 set to manually installed. tex-common is already the newest version (6.20). tex-common set to manually installed. tex-gyre is already the newest version (20180621-7). tex-gyre set to manually installed. liblqr-1-0 is already the newest version (0.4.2-2.2). liblqr-1-0 set to manually installed. python3-jinja2 is already the newest version (3.1.6-1). python3-jinja2 set to manually installed. libhogweed6t64 is already the newest version (3.10.2-1). libhogweed6t64 set to manually installed. debhelper is already the newest version (13.29). debhelper set to manually installed. imagemagick-7.q16 is already the newest version (8:7.1.2.12+dfsg1-1). imagemagick-7.q16 set to manually installed. libidn2-0 is already the newest version (2.3.8-4). libidn2-0 set to manually installed. libsynctex2 is already the newest version (2025.20250727.75242+ds-5). libsynctex2 set to manually installed. hicolor-icon-theme is already the newest version (0.18-2). hicolor-icon-theme set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. python3-pygments is already the newest version (2.19.2+dfsg-1). python3-pygments set to manually installed. libsemanage2 is already the newest version (3.9-1+b1). libsemanage2 set to manually installed. libice-dev is already the newest version (2:1.1.1-1). libice-dev set to manually installed. libcairo2-dev is already the newest version (1.18.4-3). libcairo2-dev set to manually installed. libuv1t64 is already the newest version (1.51.0-2). libuv1t64 set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1). libldap2 set to manually installed. libfreetype6 is already the newest version (2.14.1+dfsg-2). libfreetype6 set to manually installed. libxxhash0 is already the newest version (0.8.3-2). libxxhash0 set to manually installed. libxcb-shm0-dev is already the newest version (1.17.0-2+b1). libxcb-shm0-dev set to manually installed. sgml-base is already the newest version (1.31+nmu1). sgml-base set to manually installed. liblzma-dev is already the newest version (5.8.2-1). liblzma-dev set to manually installed. libimagequant0 is already the newest version (4.4.1-1). libimagequant0 set to manually installed. procps is already the newest version (2:4.0.4-9). procps set to manually installed. libboost-python1.83-dev is already the newest version (1.83.0-5+b1). libboost-python1.83-dev set to manually installed. libltdl7 is already the newest version (2.5.4-9). libltdl7 set to manually installed. python3-roman-numerals is already the newest version (4.1.0-1). python3-roman-numerals set to manually installed. liblz4-1 is already the newest version (1.10.0-6). liblz4-1 set to manually installed. libngtcp2-crypto-ossl0 is already the newest version (1.16.0-1). libngtcp2-crypto-ossl0 set to manually installed. libpam-runtime is already the newest version (1.7.0-5). liblua5.4-0 is already the newest version (5.4.8-1). liblua5.4-0 set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-12). libstdc++-15-dev set to manually installed. libcommons-parent-java is already the newest version (56-1). libcommons-parent-java set to manually installed. libteckit0 is already the newest version (2.5.13+ds-1). libteckit0 set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b9). libbrotli1 set to manually installed. python-babel-localedata is already the newest version (2.17.0-2). python-babel-localedata set to manually installed. libthai0 is already the newest version (0.1.30-1). libthai0 set to manually installed. postgresql-server-dev-all is already the newest version (287). postgresql-server-dev-all set to manually installed. libblkid-dev is already the newest version (2.41.3-3). libblkid-dev set to manually installed. libice6 is already the newest version (2:1.1.1-1). libice6 set to manually installed. libdpkg-perl is already the newest version (1.23.3). libdpkg-perl set to manually installed. libboost-atomic1.83.0 is already the newest version (1.83.0-5+b1). libboost-atomic1.83.0 set to manually installed. libctf0 is already the newest version (2.45.50.20251209-1). libctf0 set to manually installed. libboost-system-dev is already the newest version (1.83.0.2+b2). libboost-system-dev set to manually installed. libboost-program-options1.83.0 is already the newest version (1.83.0-5+b1). libboost-program-options1.83.0 set to manually installed. cmake-data is already the newest version (4.2.1-2). cmake-data set to manually installed. python3-markdown-it is already the newest version (3.0.0-3). python3-markdown-it set to manually installed. groff-base is already the newest version (1.23.0-10). groff-base set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. xtrans-dev is already the newest version (1.6.0-1). xtrans-dev set to manually installed. libncurses6 is already the newest version (6.6+20251231-1). libncurses6 set to manually installed. fontconfig is already the newest version (2.17.1-3). fontconfig set to manually installed. llvm-21-linker-tools is already the newest version (1:21.1.8-1+b1). llvm-21-linker-tools set to manually installed. librsvg2-bin is already the newest version (2.61.3+dfsg-3). librsvg2-bin set to manually installed. python3 is already the newest version (3.13.9-3). python3 set to manually installed. libdebconfclient0 is already the newest version (0.282+b2). binutils is already the newest version (2.45.50.20251209-1). binutils set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b2). llvm-21-tools is already the newest version (1:21.1.8-1+b1). llvm-21-tools set to manually installed. libboost-numpy1.83-dev is already the newest version (1.83.0-5+b1). libboost-numpy1.83-dev set to manually installed. gzip is already the newest version (1.13-1). librsvg2-2 is already the newest version (2.61.3+dfsg-3). librsvg2-2 set to manually installed. libgdbm6t64 is already the newest version (1.26-1). libgdbm6t64 set to manually installed. libzzip-0-13t64 is already the newest version (0.13.78+dfsg.1-0.2). libzzip-0-13t64 set to manually installed. libpython3-stdlib is already the newest version (3.13.9-3). libpython3-stdlib set to manually installed. libselinux-dev is already the newest version (3.9-4+b1). libselinux-dev set to manually installed. llvm-21-dev is already the newest version (1:21.1.8-1+b1). llvm-21-dev set to manually installed. python3-pandas-lib is already the newest version (2.3.3+dfsg-3). python3-pandas-lib set to manually installed. python3-sqlalchemy is already the newest version (2.0.45+ds1-1). python3-sqlalchemy set to manually installed. libsm6 is already the newest version (2:1.2.6-1). libsm6 set to manually installed. fonts-dejavu-mono is already the newest version (2.37-8). fonts-dejavu-mono set to manually installed. python3-commonmark is already the newest version (0.9.1-8). python3-commonmark set to manually installed. libexpat1-dev is already the newest version (2.7.3-1). libexpat1-dev set to manually installed. python3-typing-extensions is already the newest version (4.15.0-2). python3-typing-extensions set to manually installed. libaom3 is already the newest version (3.13.1-2). libaom3 set to manually installed. python3-certifi is already the newest version (2026.1.4+ds-1). python3-certifi set to manually installed. grep is already the newest version (3.12-1). gcc-powerpc64le-linux-gnu is already the newest version (4:15.2.0-4). gcc-powerpc64le-linux-gnu set to manually installed. libpaper2 is already the newest version (2.2.5-0.3+b3). libpaper2 set to manually installed. python3-packaging is already the newest version (25.0-2). python3-packaging set to manually installed. libxrender1 is already the newest version (1:0.9.12-1). libxrender1 set to manually installed. openssl is already the newest version (3.5.4-1). openssl set to manually installed. libgcc-s1 is already the newest version (15.2.0-12). g++-15 is already the newest version (15.2.0-12). g++-15 set to manually installed. bsdextrautils is already the newest version (2.41.3-3). bsdextrautils set to manually installed. libperl5.40 is already the newest version (5.40.1-7). libperl5.40 set to manually installed. libgssapi-krb5-2 is already the newest version (1.22.1-2). libgssapi-krb5-2 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libobjc4 is already the newest version (15.2.0-12). libobjc4 set to manually installed. libfontconfig1 is already the newest version (2.17.1-3). libfontconfig1 set to manually installed. libfribidi0 is already the newest version (1.0.16-5). libfribidi0 set to manually installed. sysvinit-utils is already the newest version (3.15-6). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b2). zlib1g-dev set to manually installed. ssl-cert is already the newest version (1.1.3). ssl-cert set to manually installed. python3-numpy is already the newest version (1:2.3.5+ds-3). python3-numpy set to manually installed. libboost-iostreams-dev is already the newest version (1.83.0.2+b2). libboost-iostreams-dev set to manually installed. dwz is already the newest version (0.16-2). dwz set to manually installed. adduser is already the newest version (3.154). adduser set to manually installed. libwebpdemux2 is already the newest version (1.5.0-0.1). libwebpdemux2 set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1.1+b1). libnghttp2-14 set to manually installed. uuid-dev is already the newest version (2.41.3-3). uuid-dev set to manually installed. dash is already the newest version (0.5.12-12). libcoordgen-dev is already the newest version (3.0.2-3). libcoordgen-dev set to manually installed. perl is already the newest version (5.40.1-7). perl set to manually installed. libbsd0 is already the newest version (0.12.2-2). libbsd0 set to manually installed. libsvtav1enc2 is already the newest version (2.3.0+dfsg-1). libsvtav1enc2 set to manually installed. sed is already the newest version (4.9-2). libglib2.0-dev-bin is already the newest version (2.86.3-4). libglib2.0-dev-bin set to manually installed. libxaw7 is already the newest version (2:1.0.16-1). libxaw7 set to manually installed. libcoordgen3 is already the newest version (3.0.2-3). libcoordgen3 set to manually installed. libdebhelper-perl is already the newest version (13.29). libdebhelper-perl set to manually installed. libdav1d7 is already the newest version (1.5.3-1). libdav1d7 set to manually installed. libgdk-pixbuf2.0-common is already the newest version (2.44.4+dfsg-1). libgdk-pixbuf2.0-common set to manually installed. libinchi1.07 is already the newest version (1.07.3+dfsg-1). libinchi1.07 set to manually installed. libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. liblcms2-2 is already the newest version (2.17-1). liblcms2-2 set to manually installed. pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. libitm1 is already the newest version (15.2.0-12). libitm1 set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. gcc-15 is already the newest version (15.2.0-12). gcc-15 set to manually installed. postgresql-server-dev-18 is already the newest version (18.1-2). postgresql-server-dev-18 set to manually installed. libpixman-1-dev is already the newest version (0.46.4-1). libpixman-1-dev set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). libboost-regex1.83-dev is already the newest version (1.83.0-5+b1). libboost-regex1.83-dev set to manually installed. libpotrace0 is already the newest version (1.16-2+b2). libpotrace0 set to manually installed. libxau6 is already the newest version (1:1.0.11-1). libxau6 set to manually installed. libudev1 is already the newest version (259-1). xfonts-utils is already the newest version (1:7.7+7). xfonts-utils set to manually installed. libquadmath0 is already the newest version (15.2.0-12). libquadmath0 set to manually installed. libmpc3 is already the newest version (1.3.1-2). libmpc3 set to manually installed. libasan8 is already the newest version (15.2.0-12). libasan8 set to manually installed. libsmartcols1 is already the newest version (2.41.3-3). libopenjp2-7 is already the newest version (2.5.4-1). libopenjp2-7 set to manually installed. libwebpmux3 is already the newest version (1.5.0-0.1). libwebpmux3 set to manually installed. util-linux is already the newest version (2.41.3-3). libboost-thread1.83.0 is already the newest version (1.83.0-5+b1). libboost-thread1.83.0 set to manually installed. texlive-latex-recommended is already the newest version (2025.20251127-1). texlive-latex-recommended set to manually installed. lmodern is already the newest version (2.005-1). lmodern set to manually installed. libicu-dev is already the newest version (76.1-4). libicu-dev set to manually installed. automake is already the newest version (1:1.18.1-3). automake set to manually installed. libfmt10 is already the newest version (10.1.1+ds1-4). libfmt10 set to manually installed. libmagickcore-7.q16-10 is already the newest version (8:7.1.2.12+dfsg1-1). libmagickcore-7.q16-10 set to manually installed. libpcre2-16-0 is already the newest version (10.46-1). libpcre2-16-0 set to manually installed. rapidjson-dev is already the newest version (1.1.0+dfsg2-7.6). rapidjson-dev set to manually installed. liblerc4 is already the newest version (4.0.0+ds-5). liblerc4 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6). libkeyutils1 set to manually installed. openssl-provider-legacy is already the newest version (3.5.4-1). g++ is already the newest version (4:15.2.0-4). g++ set to manually installed. dh-autoreconf is already the newest version (21). dh-autoreconf set to manually installed. coreutils is already the newest version (9.7-3). libboost-program-options-dev is already the newest version (1.83.0.2+b2). libboost-program-options-dev set to manually installed. libpython3-dev is already the newest version (3.13.9-3). libpython3-dev set to manually installed. libmagickwand-7.q16-10 is already the newest version (8:7.1.2.12+dfsg1-1). libmagickwand-7.q16-10 set to manually installed. libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. libtinfo6 is already the newest version (6.6+20251231-1). libz3-dev is already the newest version (4.13.3-1). libz3-dev set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. libboost-chrono1.83.0t64 is already the newest version (1.83.0-5+b1). libboost-chrono1.83.0t64 set to manually installed. libeigen3-dev is already the newest version (3.4.0-5). libeigen3-dev set to manually installed. libx11-data is already the newest version (2:1.8.12-1). libx11-data set to manually installed. libpq5 is already the newest version (18.1-2). libpq5 set to manually installed. python3-pytest is already the newest version (9.0.2-2). python3-pytest set to manually installed. libthai-data is already the newest version (0.1.30-1). libthai-data set to manually installed. libxcb1-dev is already the newest version (1.17.0-2+b1). libxcb1-dev set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11). libgc1 is already the newest version (1:8.2.10-1). libgc1 set to manually installed. libmaeparser-dev is already the newest version (1.3.3-3). libmaeparser-dev set to manually installed. libmpfi0 is already the newest version (1.5.4+ds-4). libmpfi0 set to manually installed. python3-linkify-it is already the newest version (2.0.3-1). python3-linkify-it set to manually installed. libpng-dev is already the newest version (1.6.53-1). libpng-dev set to manually installed. python3.13 is already the newest version (3.13.11-1+b1). python3.13 set to manually installed. texlive-latex-base is already the newest version (2025.20251127-1). texlive-latex-base set to manually installed. libtiff6 is already the newest version (4.7.1-1). libtiff6 set to manually installed. libc6 is already the newest version (2.42-7). imagemagick is already the newest version (8:7.1.2.12+dfsg1-1). imagemagick set to manually installed. dh-python is already the newest version (7.20251231). dh-python set to manually installed. libfontbox-java is already the newest version (1:1.8.16-5). libfontbox-java set to manually installed. ncurses-base is already the newest version (6.6+20251231-1). libboost-iostreams1.83-dev is already the newest version (1.83.0-5+b1). libboost-iostreams1.83-dev set to manually installed. libpq-dev is already the newest version (18.1-2). libpq-dev set to manually installed. texlive-latex-extra is already the newest version (2025.20251127-2). texlive-latex-extra set to manually installed. libdatrie1 is already the newest version (0.2.14-1). libdatrie1 set to manually installed. libgdk-pixbuf-2.0-0 is already the newest version (2.44.4+dfsg-1). libgdk-pixbuf-2.0-0 set to manually installed. libcom-err2 is already the newest version (1.47.2-3+b8). libcom-err2 set to manually installed. g++-powerpc64le-linux-gnu is already the newest version (4:15.2.0-4). g++-powerpc64le-linux-gnu set to manually installed. texlive-binaries is already the newest version (2025.20250727.75242+ds-5). texlive-binaries set to manually installed. libxcb-shm0 is already the newest version (1.17.0-2+b1). libxcb-shm0 set to manually installed. imagemagick-7-common is already the newest version (8:7.1.2.12+dfsg1-1). imagemagick-7-common set to manually installed. libsframe2 is already the newest version (2.45.50.20251209-1). libsframe2 set to manually installed. libtexlua53-5 is already the newest version (2025.20250727.75242+ds-5). libtexlua53-5 set to manually installed. libc-gconv-modules-extra is already the newest version (2.42-7). postgresql-common-dev is already the newest version (287). postgresql-common-dev set to manually installed. libboost-system1.83.0 is already the newest version (1.83.0-5+b1). libboost-system1.83.0 set to manually installed. libcrypt1 is already the newest version (1:4.5.1-1). libc6-dev is already the newest version (2.42-7). libc6-dev set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. libpfm4 is already the newest version (4.13.0+git106-g3e4031b-1). libpfm4 set to manually installed. python3-idna is already the newest version (3.10-1). python3-idna set to manually installed. texlive-fonts-recommended is already the newest version (2025.20251127-1). texlive-fonts-recommended set to manually installed. liblsan0 is already the newest version (15.2.0-12). liblsan0 set to manually installed. libcairo-script-interpreter2 is already the newest version (1.18.4-3). libcairo-script-interpreter2 set to manually installed. libpcre2-posix3 is already the newest version (10.46-1). libpcre2-posix3 set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. libio-pty-perl is already the newest version (1:1.20-1+b2). libio-pty-perl set to manually installed. python3-pil is already the newest version (12.0.0-1+b1). python3-pil set to manually installed. diffutils is already the newest version (1:3.12-1). x11-common is already the newest version (1:7.7+26). x11-common set to manually installed. base-passwd is already the newest version (3.6.8). libaudit1 is already the newest version (1:4.1.2-1+b1). python3-minimal is already the newest version (3.13.9-3). python3-minimal set to manually installed. libxpm4 is already the newest version (1:3.5.17-1+b3). libxpm4 set to manually installed. libptexenc1 is already the newest version (2025.20250727.75242+ds-5). libptexenc1 set to manually installed. docutils-common is already the newest version (0.22.4+dfsg-1). docutils-common set to manually installed. login.defs is already the newest version (1:4.19.0-4). login.defs set to manually installed. libgav1-2 is already the newest version (0.20.0-2). libgav1-2 set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. libxau-dev is already the newest version (1:1.0.11-1). libxau-dev set to manually installed. libreadline8t64 is already the newest version (8.3-3). libreadline8t64 set to manually installed. debianutils is already the newest version (5.23.2). libexpat1 is already the newest version (2.7.3-1). libexpat1 set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libjpeg62-turbo is already the newest version (1:2.1.5-4). libjpeg62-turbo set to manually installed. libpdfbox-java is already the newest version (1:1.8.16-5). libpdfbox-java set to manually installed. libbinutils is already the newest version (2.45.50.20251209-1). libbinutils set to manually installed. libsepol2 is already the newest version (3.9-2). libsepol2 set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. shared-mime-info is already the newest version (2.4-5+b3). shared-mime-info set to manually installed. python3-babel is already the newest version (2.17.0-2). python3-babel set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libxrender-dev is already the newest version (1:0.9.12-1). libxrender-dev set to manually installed. libboost-dev is already the newest version (1.83.0.2+b2). libboost-dev set to manually installed. readline-common is already the newest version (8.3-3). readline-common set to manually installed. librhash1 is already the newest version (1.4.6-1.1). librhash1 set to manually installed. postgresql-common is already the newest version (287). postgresql-common set to manually installed. libkpathsea6 is already the newest version (2025.20250727.75242+ds-5). libkpathsea6 set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-10). libsasl2-modules-db set to manually installed. libtsan2 is already the newest version (15.2.0-12). libtsan2 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.r0zqM83KTR (Reading database ... 83446 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.r0zqM83KTR I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.r0zqM83KTR I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.r0zqM83KTR... I: success in 218.7656 seconds Downloading dependency 1 of 504: dpkg:ppc64el=1.23.3 Downloading dependency 2 of 504: libpangocairo-1.0-0:ppc64el=1.57.0-1 Downloading dependency 3 of 504: libmd0:ppc64el=1.1.0-2+b1 Downloading dependency 4 of 504: libselinux1:ppc64el=3.9-4+b1 Downloading dependency 5 of 504: libp11-kit0:ppc64el=0.25.10-1 Downloading dependency 6 of 504: doxygen:ppc64el=1.15.0+ds1-1+b1 Downloading dependency 7 of 504: python3-markupsafe:ppc64el=3.0.3-1+b1 Downloading dependency 8 of 504: postgresql-client-common:ppc64el=287 Downloading dependency 9 of 504: ca-certificates:ppc64el=20250419 Downloading dependency 10 of 504: libxext6:ppc64el=2:1.3.4-1+b3 Downloading dependency 11 of 504: libncurses-dev:ppc64el=6.6+20251231-1 Downloading dependency 12 of 504: libgomp1:ppc64el=15.2.0-12 Downloading dependency 13 of 504: texlive-pictures:ppc64el=2025.20251127-1 Downloading dependency 14 of 504: girepository-tools:ppc64el=2.86.3-4 Downloading dependency 15 of 504: libabsl20240722:ppc64el=20240722.0-4 Downloading dependency 16 of 504: libboost-serialization1.83.0:ppc64el=1.83.0-5+b1 Downloading dependency 17 of 504: liblzo2-2:ppc64el=2.10-3+b1 Downloading dependency 18 of 504: libxml2-dev:ppc64el=2.15.1+dfsg-2+b1 Downloading dependency 19 of 504: libgfortran5:ppc64el=15.2.0-12 Downloading dependency 20 of 504: libblas3:ppc64el=3.12.1-7 Downloading dependency 21 of 504: python3-urllib3:ppc64el=2.5.0-1.1 Downloading dependency 22 of 504: t1utils:ppc64el=1.41-4 Downloading dependency 23 of 504: xorg-sgml-doctools:ppc64el=1:1.11-1.1 Downloading dependency 24 of 504: python3-dev:ppc64el=3.13.9-3 Downloading dependency 25 of 504: libmaeparser1:ppc64el=1.3.3-3 Downloading dependency 26 of 504: gcc-15-base:ppc64el=15.2.0-12 Downloading dependency 27 of 504: libjansson4:ppc64el=2.14-2+b4 Downloading dependency 28 of 504: intltool-debian:ppc64el=0.35.0+20060710.6 Downloading dependency 29 of 504: fonts-dejavu-core:ppc64el=2.37-8 Downloading dependency 30 of 504: libgraphite2-3:ppc64el=1.3.14-11 Downloading dependency 31 of 504: libjbig0:ppc64el=2.1-6.1+b2 Downloading dependency 32 of 504: preview-latex-style:ppc64el=13.2-1.1 Downloading dependency 33 of 504: liblapack3:ppc64el=3.12.1-7 Downloading dependency 34 of 504: hostname:ppc64el=3.25 Downloading dependency 35 of 504: libglib2.0-dev:ppc64el=2.86.3-4 Downloading dependency 36 of 504: libxapian30:ppc64el=1.4.29-3 Downloading dependency 37 of 504: libproc2-0:ppc64el=2:4.0.4-9 Downloading dependency 38 of 504: libgirepository-2.0-0:ppc64el=2.86.3-4 Downloading dependency 39 of 504: python3-uc-micro:ppc64el=1.0.3-1 Downloading dependency 40 of 504: libcommons-logging-java:ppc64el=1.3.0-2 Downloading dependency 41 of 504: cpp-15:ppc64el=15.2.0-12 Downloading dependency 42 of 504: gcc-15-powerpc64le-linux-gnu:ppc64el=15.2.0-12 Downloading dependency 43 of 504: libpcre2-dev:ppc64el=10.46-1 Downloading dependency 44 of 504: rpcsvc-proto:ppc64el=1.4.3-1 Downloading dependency 45 of 504: libacl1:ppc64el=2.3.2-2+b1 Downloading dependency 46 of 504: libboost-python1.83.0:ppc64el=1.83.0-5+b1 Downloading dependency 47 of 504: libboost-regex1.83.0:ppc64el=1.83.0-5+b1 Downloading dependency 48 of 504: binutils-powerpc64le-linux-gnu:ppc64el=2.45.50.20251209-1 Downloading dependency 49 of 504: bzip2:ppc64el=1.0.8-6 Downloading dependency 50 of 504: libz3-4:ppc64el=4.13.3-1 Downloading dependency 51 of 504: libkrb5support0:ppc64el=1.22.1-2 Downloading dependency 52 of 504: libyaml-0-2:ppc64el=0.2.5-2+b1 Downloading dependency 53 of 504: libx11-dev:ppc64el=2:1.8.12-1 Downloading dependency 54 of 504: libcurl4t64:ppc64el=8.18.0-1 Downloading dependency 55 of 504: libattr1:ppc64el=1:2.5.2-3 Downloading dependency 56 of 504: libtext-charwidth-perl:ppc64el=0.04-11+b4 Downloading dependency 57 of 504: libglib2.0-0t64:ppc64el=2.86.3-4 Downloading dependency 58 of 504: libbrotli-dev:ppc64el=1.1.0-2+b9 Downloading dependency 59 of 504: librav1e0.8:ppc64el=0.8.1-7 Downloading dependency 60 of 504: libmount1:ppc64el=2.41.3-3 Downloading dependency 61 of 504: libcairo2:ppc64el=1.18.4-3 Downloading dependency 62 of 504: postgresql-client-18:ppc64el=18.1-2 Downloading dependency 63 of 504: libxcb1:ppc64el=1.17.0-2+b1 Downloading dependency 64 of 504: python3-requests:ppc64el=2.32.5+dfsg-1 Downloading dependency 65 of 504: libxcb-render0:ppc64el=1.17.0-2+b1 Downloading dependency 66 of 504: python3-charset-normalizer:ppc64el=3.4.4-2 Downloading dependency 67 of 504: libxdmcp6:ppc64el=1:1.1.5-2 Downloading dependency 68 of 504: bash:ppc64el=5.3-1 Downloading dependency 69 of 504: cmake:ppc64el=4.2.1-2 Downloading dependency 70 of 504: flex:ppc64el=2.6.4-8.2+b4 Downloading dependency 71 of 504: libsysprof-capture-4-dev:ppc64el=49.0-5 Downloading dependency 72 of 504: libgio-2.0-dev:ppc64el=2.86.3-4 Downloading dependency 73 of 504: libraw23t64:ppc64el=0.21.5b-1 Downloading dependency 74 of 504: llvm-21:ppc64el=1:21.1.8-1+b1 Downloading dependency 75 of 504: python3-myst-parser:ppc64el=4.0.1-1 Downloading dependency 76 of 504: pandoc-data:ppc64el=3.1.11.1-3 Downloading dependency 77 of 504: libboost-numpy-dev:ppc64el=1.83.0.2+b2 Downloading dependency 78 of 504: libfile-stripnondeterminism-perl:ppc64el=1.15.0-1 Downloading dependency 79 of 504: libstdc++6:ppc64el=15.2.0-12 Downloading dependency 80 of 504: dpkg-dev:ppc64el=1.23.3 Downloading dependency 81 of 504: libboost-program-options1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 82 of 504: libboost-serialization1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 83 of 504: libx11-6:ppc64el=2:1.8.12-1 Downloading dependency 84 of 504: passwd:ppc64el=1:4.19.0-4 Downloading dependency 85 of 504: libfontconfig-dev:ppc64el=2.17.1-3 Downloading dependency 86 of 504: libnettle8t64:ppc64el=3.10.2-1 Downloading dependency 87 of 504: python3-dateutil:ppc64el=2.9.0-4 Downloading dependency 88 of 504: libboost-atomic1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 89 of 504: libclang1-21:ppc64el=1:21.1.8-1+b1 Downloading dependency 90 of 504: libicu76:ppc64el=76.1-4 Downloading dependency 91 of 504: fonts-lmodern:ppc64el=2.005-1 Downloading dependency 92 of 504: xz-utils:ppc64el=5.8.2-1 Downloading dependency 93 of 504: python3.13-minimal:ppc64el=3.13.11-1+b1 Downloading dependency 94 of 504: libmount-dev:ppc64el=2.41.3-3 Downloading dependency 95 of 504: libpcre2-32-0:ppc64el=10.46-1 Downloading dependency 96 of 504: libatomic1:ppc64el=15.2.0-12 Downloading dependency 97 of 504: libboost-system1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 98 of 504: libfreetype-dev:ppc64el=2.14.1+dfsg-2 Downloading dependency 99 of 504: libboost-thread1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 100 of 504: libjs-sphinxdoc:ppc64el=8.2.3-12 Downloading dependency 101 of 504: autopoint:ppc64el=0.23.2-1 Downloading dependency 102 of 504: libxml2-16:ppc64el=2.15.1+dfsg-2+b1 Downloading dependency 103 of 504: m4:ppc64el=1.4.20-2 Downloading dependency 104 of 504: python3-chardet:ppc64el=5.2.0+dfsg-2 Downloading dependency 105 of 504: latexmk:ppc64el=1:4.87~ds-1 Downloading dependency 106 of 504: libwebp7:ppc64el=1.5.0-0.1 Downloading dependency 107 of 504: libpam-modules:ppc64el=1.7.0-5 Downloading dependency 108 of 504: libpython3.13-dev:ppc64el=3.13.11-1+b1 Downloading dependency 109 of 504: icu-devtools:ppc64el=76.1-4 Downloading dependency 110 of 504: libsqlite3-0:ppc64el=3.46.1-8 Downloading dependency 111 of 504: libapache-pom-java:ppc64el=33-2 Downloading dependency 112 of 504: build-essential:ppc64el=12.12 Downloading dependency 113 of 504: fontconfig-config:ppc64el=2.17.1-3 Downloading dependency 114 of 504: perl-modules-5.40:ppc64el=5.40.1-7 Downloading dependency 115 of 504: bison:ppc64el=2:3.8.2+dfsg-1+b2 Downloading dependency 116 of 504: libngtcp2-16:ppc64el=1.16.0-1 Downloading dependency 117 of 504: libjsoncpp26:ppc64el=1.9.6-5 Downloading dependency 118 of 504: python3-pandas:ppc64el=2.3.3+dfsg-3 Downloading dependency 119 of 504: libuuid1:ppc64el=2.41.3-3 Downloading dependency 120 of 504: libboost-regex-dev:ppc64el=1.83.0.2+b2 Downloading dependency 121 of 504: libctf-nobfd0:ppc64el=2.45.50.20251209-1 Downloading dependency 122 of 504: libboost-python-dev:ppc64el=1.83.0.2+b2 Downloading dependency 123 of 504: libgnutls30t64:ppc64el=3.8.11-3 Downloading dependency 124 of 504: libxcb-render0-dev:ppc64el=1.17.0-2+b1 Downloading dependency 125 of 504: x11proto-dev:ppc64el=2024.1-1 Downloading dependency 126 of 504: libssl-dev:ppc64el=3.5.4-1 Downloading dependency 127 of 504: libelf1t64:ppc64el=0.194-1 Downloading dependency 128 of 504: dh-strip-nondeterminism:ppc64el=1.15.0-1 Downloading dependency 129 of 504: zlib1g:ppc64el=1:1.3.dfsg+really1.3.1-1+b2 Downloading dependency 130 of 504: xfonts-encodings:ppc64el=1:1.0.4-2.2 Downloading dependency 131 of 504: libgmp10:ppc64el=2:6.3.0+dfsg-5 Downloading dependency 132 of 504: libfontenc1:ppc64el=1:1.1.8-1+b2 Downloading dependency 133 of 504: libspdlog1.15:ppc64el=1:1.15.3+ds-1 Downloading dependency 134 of 504: python3-iniconfig:ppc64el=2.1.0-2 Downloading dependency 135 of 504: libxt6t64:ppc64el=1:1.2.1-1.3 Downloading dependency 136 of 504: libboost-numpy1.83.0:ppc64el=1.83.0-5+b1 Downloading dependency 137 of 504: mawk:ppc64el=1.3.4.20250131-2 Downloading dependency 138 of 504: libsepol-dev:ppc64el=3.9-2 Downloading dependency 139 of 504: libpangoft2-1.0-0:ppc64el=1.57.0-1 Downloading dependency 140 of 504: libffi-dev:ppc64el=3.5.2-3 Downloading dependency 141 of 504: libkrb5-3:ppc64el=1.22.1-2 Downloading dependency 142 of 504: libssl3t64:ppc64el=3.5.4-1 Downloading dependency 143 of 504: findutils:ppc64el=4.10.0-3 Downloading dependency 144 of 504: libblkid1:ppc64el=2.41.3-3 Downloading dependency 145 of 504: python3-mdurl:ppc64el=0.1.2-1 Downloading dependency 146 of 504: sphinx-common:ppc64el=8.2.3-12 Downloading dependency 147 of 504: libboost-chrono1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 148 of 504: libclang-cpp21:ppc64el=1:21.1.8-1+b1 Downloading dependency 149 of 504: libcairo-gobject2:ppc64el=1.18.4-3 Downloading dependency 150 of 504: libarchive13t64:ppc64el=3.8.5-1 Downloading dependency 151 of 504: libtool:ppc64el=2.5.4-9 Downloading dependency 152 of 504: libxi6:ppc64el=2:1.8.2-2 Downloading dependency 153 of 504: xdg-utils:ppc64el=1.2.1-2 Downloading dependency 154 of 504: libinchi-dev:ppc64el=1.07.3+dfsg-1 Downloading dependency 155 of 504: libpsl5t64:ppc64el=0.21.2-1.1+b1 Downloading dependency 156 of 504: libsm-dev:ppc64el=2:1.2.6-1 Downloading dependency 157 of 504: libboost-iostreams1.83.0:ppc64el=1.83.0-5+b1 Downloading dependency 158 of 504: ucf:ppc64el=3.0052 Downloading dependency 159 of 504: libk5crypto3:ppc64el=1.22.1-2 Downloading dependency 160 of 504: libpixman-1-0:ppc64el=0.46.4-1 Downloading dependency 161 of 504: libpaper-utils:ppc64el=2.2.5-0.3+b3 Downloading dependency 162 of 504: texlive-base:ppc64el=2025.20251127-1 Downloading dependency 163 of 504: libmagic-mgc:ppc64el=1:5.46-5 Downloading dependency 164 of 504: libcatch2-dev:ppc64el=3.7.1-0.6 Downloading dependency 165 of 504: xml-core:ppc64el=0.19 Downloading dependency 166 of 504: g++-15-powerpc64le-linux-gnu:ppc64el=15.2.0-12 Downloading dependency 167 of 504: tar:ppc64el=1.35+dfsg-3.1 Downloading dependency 168 of 504: libubsan1:ppc64el=15.2.0-12 Downloading dependency 169 of 504: libpipeline1:ppc64el=1.5.8-2 Downloading dependency 170 of 504: python3-yaml:ppc64el=6.0.3-1 Downloading dependency 171 of 504: libyuv0:ppc64el=0.0.1922.20260106-1 Downloading dependency 172 of 504: python3-docutils:ppc64el=0.22.4+dfsg-1 Downloading dependency 173 of 504: libharfbuzz0b:ppc64el=12.3.0-4 Downloading dependency 174 of 504: libraqm0:ppc64el=0.10.3-1 Downloading dependency 175 of 504: libsharpyuv0:ppc64el=1.5.0-0.1 Downloading dependency 176 of 504: llvm-21-runtime:ppc64el=1:21.1.8-1+b1 Downloading dependency 177 of 504: sensible-utils:ppc64el=0.0.26 Downloading dependency 178 of 504: libedit2:ppc64el=3.1-20251016-1 Downloading dependency 179 of 504: ncurses-bin:ppc64el=6.6+20251231-1 Downloading dependency 180 of 504: cpp:ppc64el=4:15.2.0-4 Downloading dependency 181 of 504: libpango-1.0-0:ppc64el=1.57.0-1 Downloading dependency 182 of 504: libipc-run-perl:ppc64el=20250809.0-1 Downloading dependency 183 of 504: cpp-15-powerpc64le-linux-gnu:ppc64el=15.2.0-12 Downloading dependency 184 of 504: init-system-helpers:ppc64el=1.69 Downloading dependency 185 of 504: libheif-plugin-libde265:ppc64el=1.20.2-2+b4 Downloading dependency 186 of 504: liblzma5:ppc64el=5.8.2-1 Downloading dependency 187 of 504: libpython3.13-minimal:ppc64el=3.13.11-1+b1 Downloading dependency 188 of 504: libglib2.0-bin:ppc64el=2.86.3-4 Downloading dependency 189 of 504: libxmu6:ppc64el=2:1.1.3-4 Downloading dependency 190 of 504: python3.13-dev:ppc64el=3.13.11-1+b1 Downloading dependency 191 of 504: libboost-date-time1.83.0:ppc64el=1.83.0-5+b1 Downloading dependency 192 of 504: libjson-perl:ppc64el=4.10000-1 Downloading dependency 193 of 504: python3-pytz:ppc64el=2025.2-5 Downloading dependency 194 of 504: catch2:ppc64el=3.7.1-0.6 Downloading dependency 195 of 504: libsystemd0:ppc64el=259-1 Downloading dependency 196 of 504: libmpfr6:ppc64el=4.2.2-2 Downloading dependency 197 of 504: debconf:ppc64el=1.5.91 Downloading dependency 198 of 504: libfftw3-double3:ppc64el=3.3.10-2+b1 Downloading dependency 199 of 504: python3-greenlet:ppc64el=3.2.4-3 Downloading dependency 200 of 504: perl-base:ppc64el=5.40.1-7 Downloading dependency 201 of 504: libffi8:ppc64el=3.5.2-3 Downloading dependency 202 of 504: python3-mdit-py-plugins:ppc64el=0.5.0-1 Downloading dependency 203 of 504: libde265-0:ppc64el=1.0.16-1+b1 Downloading dependency 204 of 504: python3-recommonmark:ppc64el=0.7.1+ds-8 Downloading dependency 205 of 504: libgcc-15-dev:ppc64el=15.2.0-12 Downloading dependency 206 of 504: libheif-plugin-dav1d:ppc64el=1.20.2-2+b4 Downloading dependency 207 of 504: libpcre2-8-0:ppc64el=10.46-1 Downloading dependency 208 of 504: binutils-common:ppc64el=2.45.50.20251209-1 Downloading dependency 209 of 504: libgdbm-compat4t64:ppc64el=1.26-1 Downloading dependency 210 of 504: libsqlite3-dev:ppc64el=3.46.1-8 Downloading dependency 211 of 504: libheif1:ppc64el=1.20.2-2+b4 Downloading dependency 212 of 504: libc-dev-bin:ppc64el=2.42-7 Downloading dependency 213 of 504: libzstd1:ppc64el=1.5.7+dfsg-3 Downloading dependency 214 of 504: python3-defusedxml:ppc64el=0.7.1-3 Downloading dependency 215 of 504: python3-alabaster:ppc64el=0.7.16-0.1 Downloading dependency 216 of 504: native-architecture:ppc64el=0.2.6 Downloading dependency 217 of 504: libpam0g:ppc64el=1.7.0-5 Downloading dependency 218 of 504: patch:ppc64el=2.8-2 Downloading dependency 219 of 504: libbz2-1.0:ppc64el=1.0.8-6 Downloading dependency 220 of 504: cpp-powerpc64le-linux-gnu:ppc64el=4:15.2.0-4 Downloading dependency 221 of 504: pandoc:ppc64el=3.1.11.1+ds-4 Downloading dependency 222 of 504: libpython3.13:ppc64el=3.13.11-1+b1 Downloading dependency 223 of 504: libclang-common-21-dev:ppc64el=1:21.1.8-1+b1 Downloading dependency 224 of 504: libtext-wrapi18n-perl:ppc64el=0.06-10 Downloading dependency 225 of 504: python3-imagesize:ppc64el=1.4.1-1 Downloading dependency 226 of 504: linux-libc-dev:ppc64el=6.18.3-1 Downloading dependency 227 of 504: libboost-thread-dev:ppc64el=1.83.0.2+b2 Downloading dependency 228 of 504: libuchardet0:ppc64el=0.0.8-2 Downloading dependency 229 of 504: pkgconf-bin:ppc64el=1.8.1-4 Downloading dependency 230 of 504: gettext:ppc64el=0.23.2-1 Downloading dependency 231 of 504: libobjc-15-dev:ppc64el=15.2.0-12 Downloading dependency 232 of 504: autoconf:ppc64el=2.72-3.1 Downloading dependency 233 of 504: libboost-date-time1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 234 of 504: libgio-2.0-dev-bin:ppc64el=2.86.3-4 Downloading dependency 235 of 504: libllvm21:ppc64el=1:21.1.8-1+b1 Downloading dependency 236 of 504: libxext-dev:ppc64el=2:1.3.4-1+b3 Downloading dependency 237 of 504: python3-numpy-dev:ppc64el=1:2.3.5+ds-3 Downloading dependency 238 of 504: gettext-base:ppc64el=0.23.2-1 Downloading dependency 239 of 504: librtmp1:ppc64el=2.4+20151223.gitfa8646d.1-3 Downloading dependency 240 of 504: libcc1-0:ppc64el=15.2.0-12 Downloading dependency 241 of 504: libsasl2-2:ppc64el=2.1.28+dfsg1-10 Downloading dependency 242 of 504: libnuma1:ppc64el=2.0.19-1 Downloading dependency 243 of 504: libpython3.13-stdlib:ppc64el=3.13.11-1+b1 Downloading dependency 244 of 504: python3-snowballstemmer:ppc64el=3.0.1-1 Downloading dependency 245 of 504: libunistring5:ppc64el=1.3-2 Downloading dependency 246 of 504: libcap2:ppc64el=1:2.75-10+b5 Downloading dependency 247 of 504: libxdmcp-dev:ppc64el=1:1.1.5-2 Downloading dependency 248 of 504: libglib2.0-data:ppc64el=2.86.3-4 Downloading dependency 249 of 504: libboost1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 250 of 504: texlive-luatex:ppc64el=2025.20251127-1 Downloading dependency 251 of 504: python3-sphinx:ppc64el=8.2.3-12 Downloading dependency 252 of 504: tzdata:ppc64el=2025c-3 Downloading dependency 253 of 504: libdeflate0:ppc64el=1.23-2 Downloading dependency 254 of 504: libbz2-dev:ppc64el=1.0.8-6 Downloading dependency 255 of 504: libpng16-16t64:ppc64el=1.6.53-1 Downloading dependency 256 of 504: libavif16:ppc64el=1.3.0-1+b2 Downloading dependency 257 of 504: libsemanage-common:ppc64el=3.9-1 Downloading dependency 258 of 504: libncursesw6:ppc64el=6.6+20251231-1 Downloading dependency 259 of 504: libseccomp2:ppc64el=2.6.0-2+b1 Downloading dependency 260 of 504: gcc:ppc64el=4:15.2.0-4 Downloading dependency 261 of 504: libc-bin:ppc64el=2.42-7 Downloading dependency 262 of 504: libnghttp3-9:ppc64el=1.12.0-1 Downloading dependency 263 of 504: architecture-properties:ppc64el=0.2.6 Downloading dependency 264 of 504: base-files:ppc64el=14 Downloading dependency 265 of 504: clang-21:ppc64el=1:21.1.8-1+b1 Downloading dependency 266 of 504: tex-common:ppc64el=6.20 Downloading dependency 267 of 504: tex-gyre:ppc64el=20180621-7 Downloading dependency 268 of 504: liblqr-1-0:ppc64el=0.4.2-2.2 Downloading dependency 269 of 504: python3-jinja2:ppc64el=3.1.6-1 Downloading dependency 270 of 504: libhogweed6t64:ppc64el=3.10.2-1 Downloading dependency 271 of 504: debhelper:ppc64el=13.29 Downloading dependency 272 of 504: imagemagick-7.q16:ppc64el=8:7.1.2.12+dfsg1-1 Downloading dependency 273 of 504: libidn2-0:ppc64el=2.3.8-4 Downloading dependency 274 of 504: libsynctex2:ppc64el=2025.20250727.75242+ds-5 Downloading dependency 275 of 504: hicolor-icon-theme:ppc64el=0.18-2 Downloading dependency 276 of 504: media-types:ppc64el=14.0.0 Downloading dependency 277 of 504: python3-pygments:ppc64el=2.19.2+dfsg-1 Downloading dependency 278 of 504: libsemanage2:ppc64el=3.9-1+b1 Downloading dependency 279 of 504: libice-dev:ppc64el=2:1.1.1-1 Downloading dependency 280 of 504: libcairo2-dev:ppc64el=1.18.4-3 Downloading dependency 281 of 504: libuv1t64:ppc64el=1.51.0-2 Downloading dependency 282 of 504: libldap2:ppc64el=2.6.10+dfsg-1 Downloading dependency 283 of 504: libfreetype6:ppc64el=2.14.1+dfsg-2 Downloading dependency 284 of 504: libxxhash0:ppc64el=0.8.3-2 Downloading dependency 285 of 504: libxcb-shm0-dev:ppc64el=1.17.0-2+b1 Downloading dependency 286 of 504: sgml-base:ppc64el=1.31+nmu1 Downloading dependency 287 of 504: liblzma-dev:ppc64el=5.8.2-1 Downloading dependency 288 of 504: libimagequant0:ppc64el=4.4.1-1 Downloading dependency 289 of 504: procps:ppc64el=2:4.0.4-9 Downloading dependency 290 of 504: libboost-python1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 291 of 504: libltdl7:ppc64el=2.5.4-9 Downloading dependency 292 of 504: python3-roman-numerals:ppc64el=4.1.0-1 Downloading dependency 293 of 504: liblz4-1:ppc64el=1.10.0-6 Downloading dependency 294 of 504: libngtcp2-crypto-ossl0:ppc64el=1.16.0-1 Downloading dependency 295 of 504: libpam-runtime:ppc64el=1.7.0-5 Downloading dependency 296 of 504: liblua5.4-0:ppc64el=5.4.8-1 Downloading dependency 297 of 504: libstdc++-15-dev:ppc64el=15.2.0-12 Downloading dependency 298 of 504: libcommons-parent-java:ppc64el=56-1 Downloading dependency 299 of 504: libteckit0:ppc64el=2.5.13+ds-1 Downloading dependency 300 of 504: libbrotli1:ppc64el=1.1.0-2+b9 Downloading dependency 301 of 504: python-babel-localedata:ppc64el=2.17.0-2 Downloading dependency 302 of 504: libthai0:ppc64el=0.1.30-1 Downloading dependency 303 of 504: postgresql-server-dev-all:ppc64el=287 Downloading dependency 304 of 504: libblkid-dev:ppc64el=2.41.3-3 Downloading dependency 305 of 504: libice6:ppc64el=2:1.1.1-1 Downloading dependency 306 of 504: libdpkg-perl:ppc64el=1.23.3 Downloading dependency 307 of 504: libboost-atomic1.83.0:ppc64el=1.83.0-5+b1 Downloading dependency 308 of 504: libctf0:ppc64el=2.45.50.20251209-1 Downloading dependency 309 of 504: libboost-system-dev:ppc64el=1.83.0.2+b2 Downloading dependency 310 of 504: libboost-program-options1.83.0:ppc64el=1.83.0-5+b1 Downloading dependency 311 of 504: cmake-data:ppc64el=4.2.1-2 Downloading dependency 312 of 504: python3-markdown-it:ppc64el=3.0.0-3 Downloading dependency 313 of 504: groff-base:ppc64el=1.23.0-10 Downloading dependency 314 of 504: libssh2-1t64:ppc64el=1.11.1-1 Downloading dependency 315 of 504: xtrans-dev:ppc64el=1.6.0-1 Downloading dependency 316 of 504: libncurses6:ppc64el=6.6+20251231-1 Downloading dependency 317 of 504: fontconfig:ppc64el=2.17.1-3 Downloading dependency 318 of 504: llvm-21-linker-tools:ppc64el=1:21.1.8-1+b1 Downloading dependency 319 of 504: librsvg2-bin:ppc64el=2.61.3+dfsg-3 Downloading dependency 320 of 504: python3:ppc64el=3.13.9-3 Downloading dependency 321 of 504: libdebconfclient0:ppc64el=0.282+b2 Downloading dependency 322 of 504: binutils:ppc64el=2.45.50.20251209-1 Downloading dependency 323 of 504: libcap-ng0:ppc64el=0.8.5-4+b2 Downloading dependency 324 of 504: llvm-21-tools:ppc64el=1:21.1.8-1+b1 Downloading dependency 325 of 504: libboost-numpy1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 326 of 504: gzip:ppc64el=1.13-1 Downloading dependency 327 of 504: librsvg2-2:ppc64el=2.61.3+dfsg-3 Downloading dependency 328 of 504: libgdbm6t64:ppc64el=1.26-1 Downloading dependency 329 of 504: libzzip-0-13t64:ppc64el=0.13.78+dfsg.1-0.2 Downloading dependency 330 of 504: libpython3-stdlib:ppc64el=3.13.9-3 Downloading dependency 331 of 504: libselinux-dev:ppc64el=3.9-4+b1 Downloading dependency 332 of 504: llvm-21-dev:ppc64el=1:21.1.8-1+b1 Downloading dependency 333 of 504: python3-pandas-lib:ppc64el=2.3.3+dfsg-3 Downloading dependency 334 of 504: python3-sqlalchemy:ppc64el=2.0.45+ds1-1 Downloading dependency 335 of 504: libsm6:ppc64el=2:1.2.6-1 Downloading dependency 336 of 504: fonts-dejavu-mono:ppc64el=2.37-8 Downloading dependency 337 of 504: python3-commonmark:ppc64el=0.9.1-8 Downloading dependency 338 of 504: libexpat1-dev:ppc64el=2.7.3-1 Downloading dependency 339 of 504: python3-typing-extensions:ppc64el=4.15.0-2 Downloading dependency 340 of 504: libaom3:ppc64el=3.13.1-2 Downloading dependency 341 of 504: python3-certifi:ppc64el=2026.1.4+ds-1 Downloading dependency 342 of 504: grep:ppc64el=3.12-1 Downloading dependency 343 of 504: gcc-powerpc64le-linux-gnu:ppc64el=4:15.2.0-4 Downloading dependency 344 of 504: libpaper2:ppc64el=2.2.5-0.3+b3 Downloading dependency 345 of 504: python3-packaging:ppc64el=25.0-2 Downloading dependency 346 of 504: libxrender1:ppc64el=1:0.9.12-1 Downloading dependency 347 of 504: openssl:ppc64el=3.5.4-1 Downloading dependency 348 of 504: libgcc-s1:ppc64el=15.2.0-12 Downloading dependency 349 of 504: g++-15:ppc64el=15.2.0-12 Downloading dependency 350 of 504: bsdextrautils:ppc64el=2.41.3-3 Downloading dependency 351 of 504: libperl5.40:ppc64el=5.40.1-7 Downloading dependency 352 of 504: libgssapi-krb5-2:ppc64el=1.22.1-2 Downloading dependency 353 of 504: man-db:ppc64el=2.13.1-1 Downloading dependency 354 of 504: libobjc4:ppc64el=15.2.0-12 Downloading dependency 355 of 504: libfontconfig1:ppc64el=2.17.1-3 Downloading dependency 356 of 504: libfribidi0:ppc64el=1.0.16-5 Downloading dependency 357 of 504: sysvinit-utils:ppc64el=3.15-6 Downloading dependency 358 of 504: zlib1g-dev:ppc64el=1:1.3.dfsg+really1.3.1-1+b2 Downloading dependency 359 of 504: ssl-cert:ppc64el=1.1.3 Downloading dependency 360 of 504: python3-numpy:ppc64el=1:2.3.5+ds-3 Downloading dependency 361 of 504: libboost-iostreams-dev:ppc64el=1.83.0.2+b2 Downloading dependency 362 of 504: dwz:ppc64el=0.16-2 Downloading dependency 363 of 504: adduser:ppc64el=3.154 Downloading dependency 364 of 504: libwebpdemux2:ppc64el=1.5.0-0.1 Downloading dependency 365 of 504: libnghttp2-14:ppc64el=1.64.0-1.1+b1 Downloading dependency 366 of 504: uuid-dev:ppc64el=2.41.3-3 Downloading dependency 367 of 504: dash:ppc64el=0.5.12-12 Downloading dependency 368 of 504: libcoordgen-dev:ppc64el=3.0.2-3 Downloading dependency 369 of 504: perl:ppc64el=5.40.1-7 Downloading dependency 370 of 504: libbsd0:ppc64el=0.12.2-2 Downloading dependency 371 of 504: libsvtav1enc2:ppc64el=2.3.0+dfsg-1 Downloading dependency 372 of 504: sed:ppc64el=4.9-2 Downloading dependency 373 of 504: libglib2.0-dev-bin:ppc64el=2.86.3-4 Downloading dependency 374 of 504: libxaw7:ppc64el=2:1.0.16-1 Downloading dependency 375 of 504: libcoordgen3:ppc64el=3.0.2-3 Downloading dependency 376 of 504: libdebhelper-perl:ppc64el=13.29 Downloading dependency 377 of 504: libdav1d7:ppc64el=1.5.3-1 Downloading dependency 378 of 504: libgdk-pixbuf2.0-common:ppc64el=2.44.4+dfsg-1 Downloading dependency 379 of 504: libinchi1.07:ppc64el=1.07.3+dfsg-1 Downloading dependency 380 of 504: libmagic1t64:ppc64el=1:5.46-5 Downloading dependency 381 of 504: liblcms2-2:ppc64el=2.17-1 Downloading dependency 382 of 504: pkgconf:ppc64el=1.8.1-4 Downloading dependency 383 of 504: libitm1:ppc64el=15.2.0-12 Downloading dependency 384 of 504: file:ppc64el=1:5.46-5 Downloading dependency 385 of 504: gcc-15:ppc64el=15.2.0-12 Downloading dependency 386 of 504: postgresql-server-dev-18:ppc64el=18.1-2 Downloading dependency 387 of 504: libpixman-1-dev:ppc64el=0.46.4-1 Downloading dependency 388 of 504: libaudit-common:ppc64el=1:4.1.2-1 Downloading dependency 389 of 504: libboost-regex1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 390 of 504: libpotrace0:ppc64el=1.16-2+b2 Downloading dependency 391 of 504: libxau6:ppc64el=1:1.0.11-1 Downloading dependency 392 of 504: libudev1:ppc64el=259-1 Downloading dependency 393 of 504: xfonts-utils:ppc64el=1:7.7+7 Downloading dependency 394 of 504: libquadmath0:ppc64el=15.2.0-12 Downloading dependency 395 of 504: libmpc3:ppc64el=1.3.1-2 Downloading dependency 396 of 504: libasan8:ppc64el=15.2.0-12 Downloading dependency 397 of 504: libsmartcols1:ppc64el=2.41.3-3 Downloading dependency 398 of 504: libopenjp2-7:ppc64el=2.5.4-1 Downloading dependency 399 of 504: libwebpmux3:ppc64el=1.5.0-0.1 Downloading dependency 400 of 504: util-linux:ppc64el=2.41.3-3 Downloading dependency 401 of 504: libboost-thread1.83.0:ppc64el=1.83.0-5+b1 Downloading dependency 402 of 504: texlive-latex-recommended:ppc64el=2025.20251127-1 Downloading dependency 403 of 504: lmodern:ppc64el=2.005-1 Downloading dependency 404 of 504: libicu-dev:ppc64el=76.1-4 Downloading dependency 405 of 504: automake:ppc64el=1:1.18.1-3 Downloading dependency 406 of 504: libfmt10:ppc64el=10.1.1+ds1-4 Downloading dependency 407 of 504: libmagickcore-7.q16-10:ppc64el=8:7.1.2.12+dfsg1-1 Downloading dependency 408 of 504: libpcre2-16-0:ppc64el=10.46-1 Downloading dependency 409 of 504: rapidjson-dev:ppc64el=1.1.0+dfsg2-7.6 Downloading dependency 410 of 504: liblerc4:ppc64el=4.0.0+ds-5 Downloading dependency 411 of 504: libkeyutils1:ppc64el=1.6.3-6 Downloading dependency 412 of 504: openssl-provider-legacy:ppc64el=3.5.4-1 Downloading dependency 413 of 504: g++:ppc64el=4:15.2.0-4 Downloading dependency 414 of 504: dh-autoreconf:ppc64el=21 Downloading dependency 415 of 504: coreutils:ppc64el=9.7-3 Downloading dependency 416 of 504: libboost-program-options-dev:ppc64el=1.83.0.2+b2 Downloading dependency 417 of 504: libpython3-dev:ppc64el=3.13.9-3 Downloading dependency 418 of 504: libmagickwand-7.q16-10:ppc64el=8:7.1.2.12+dfsg1-1 Downloading dependency 419 of 504: libpkgconf3:ppc64el=1.8.1-4 Downloading dependency 420 of 504: libtinfo6:ppc64el=6.6+20251231-1 Downloading dependency 421 of 504: libz3-dev:ppc64el=4.13.3-1 Downloading dependency 422 of 504: libtasn1-6:ppc64el=4.20.0-2 Downloading dependency 423 of 504: make:ppc64el=4.4.1-3 Downloading dependency 424 of 504: libboost-chrono1.83.0t64:ppc64el=1.83.0-5+b1 Downloading dependency 425 of 504: libeigen3-dev:ppc64el=3.4.0-5 Downloading dependency 426 of 504: libx11-data:ppc64el=2:1.8.12-1 Downloading dependency 427 of 504: libpq5:ppc64el=18.1-2 Downloading dependency 428 of 504: python3-pytest:ppc64el=9.0.2-2 Downloading dependency 429 of 504: libthai-data:ppc64el=0.1.30-1 Downloading dependency 430 of 504: libxcb1-dev:ppc64el=1.17.0-2+b1 Downloading dependency 431 of 504: libdb5.3t64:ppc64el=5.3.28+dfsg2-11 Downloading dependency 432 of 504: libgc1:ppc64el=1:8.2.10-1 Downloading dependency 433 of 504: libmaeparser-dev:ppc64el=1.3.3-3 Downloading dependency 434 of 504: libmpfi0:ppc64el=1.5.4+ds-4 Downloading dependency 435 of 504: python3-linkify-it:ppc64el=2.0.3-1 Downloading dependency 436 of 504: libpng-dev:ppc64el=1.6.53-1 Downloading dependency 437 of 504: python3.13:ppc64el=3.13.11-1+b1 Downloading dependency 438 of 504: texlive-latex-base:ppc64el=2025.20251127-1 Downloading dependency 439 of 504: libtiff6:ppc64el=4.7.1-1 Downloading dependency 440 of 504: libc6:ppc64el=2.42-7 Downloading dependency 441 of 504: imagemagick:ppc64el=8:7.1.2.12+dfsg1-1 Downloading dependency 442 of 504: dh-python:ppc64el=7.20251231 Downloading dependency 443 of 504: libfontbox-java:ppc64el=1:1.8.16-5 Downloading dependency 444 of 504: ncurses-base:ppc64el=6.6+20251231-1 Downloading dependency 445 of 504: libboost-iostreams1.83-dev:ppc64el=1.83.0-5+b1 Downloading dependency 446 of 504: libpq-dev:ppc64el=18.1-2 Downloading dependency 447 of 504: texlive-latex-extra:ppc64el=2025.20251127-2 Downloading dependency 448 of 504: libdatrie1:ppc64el=0.2.14-1 Downloading dependency 449 of 504: libgdk-pixbuf-2.0-0:ppc64el=2.44.4+dfsg-1 Downloading dependency 450 of 504: libcom-err2:ppc64el=1.47.2-3+b8 Downloading dependency 451 of 504: g++-powerpc64le-linux-gnu:ppc64el=4:15.2.0-4 Downloading dependency 452 of 504: texlive-binaries:ppc64el=2025.20250727.75242+ds-5 Downloading dependency 453 of 504: libxcb-shm0:ppc64el=1.17.0-2+b1 Downloading dependency 454 of 504: imagemagick-7-common:ppc64el=8:7.1.2.12+dfsg1-1 Downloading dependency 455 of 504: libsframe2:ppc64el=2.45.50.20251209-1 Downloading dependency 456 of 504: libtexlua53-5:ppc64el=2025.20250727.75242+ds-5 Downloading dependency 457 of 504: libc-gconv-modules-extra:ppc64el=2.42-7 Downloading dependency 458 of 504: postgresql-common-dev:ppc64el=287 Downloading dependency 459 of 504: libboost-system1.83.0:ppc64el=1.83.0-5+b1 Downloading dependency 460 of 504: libcrypt1:ppc64el=1:4.5.1-1 Downloading dependency 461 of 504: libc6-dev:ppc64el=2.42-7 Downloading dependency 462 of 504: libpam-modules-bin:ppc64el=1.7.0-5 Downloading dependency 463 of 504: python3-pluggy:ppc64el=1.6.0-2 Downloading dependency 464 of 504: libpfm4:ppc64el=4.13.0+git106-g3e4031b-1 Downloading dependency 465 of 504: python3-idna:ppc64el=3.10-1 Downloading dependency 466 of 504: texlive-fonts-recommended:ppc64el=2025.20251127-1 Downloading dependency 467 of 504: liblsan0:ppc64el=15.2.0-12 Downloading dependency 468 of 504: libcairo-script-interpreter2:ppc64el=1.18.4-3 Downloading dependency 469 of 504: libpcre2-posix3:ppc64el=10.46-1 Downloading dependency 470 of 504: autotools-dev:ppc64el=20240727.1 Downloading dependency 471 of 504: libio-pty-perl:ppc64el=1:1.20-1+b2 Downloading dependency 472 of 504: python3-pil:ppc64el=12.0.0-1+b1 Downloading dependency 473 of 504: diffutils:ppc64el=1:3.12-1 Downloading dependency 474 of 504: x11-common:ppc64el=1:7.7+26 Downloading dependency 475 of 504: base-passwd:ppc64el=3.6.8 Downloading dependency 476 of 504: libaudit1:ppc64el=1:4.1.2-1+b1 Downloading dependency 477 of 504: python3-minimal:ppc64el=3.13.9-3 Downloading dependency 478 of 504: libxpm4:ppc64el=1:3.5.17-1+b3 Downloading dependency 479 of 504: libptexenc1:ppc64el=2025.20250727.75242+ds-5 Downloading dependency 480 of 504: docutils-common:ppc64el=0.22.4+dfsg-1 Downloading dependency 481 of 504: login.defs:ppc64el=1:4.19.0-4 Downloading dependency 482 of 504: libgav1-2:ppc64el=0.20.0-2 Downloading dependency 483 of 504: netbase:ppc64el=6.5 Downloading dependency 484 of 504: libxau-dev:ppc64el=1:1.0.11-1 Downloading dependency 485 of 504: libreadline8t64:ppc64el=8.3-3 Downloading dependency 486 of 504: debianutils:ppc64el=5.23.2 Downloading dependency 487 of 504: libexpat1:ppc64el=2.7.3-1 Downloading dependency 488 of 504: libisl23:ppc64el=0.27-1 Downloading dependency 489 of 504: libjpeg62-turbo:ppc64el=1:2.1.5-4 Downloading dependency 490 of 504: libpdfbox-java:ppc64el=1:1.8.16-5 Downloading dependency 491 of 504: libbinutils:ppc64el=2.45.50.20251209-1 Downloading dependency 492 of 504: libsepol2:ppc64el=3.9-2 Downloading dependency 493 of 504: po-debconf:ppc64el=1.0.22 Downloading dependency 494 of 504: shared-mime-info:ppc64el=2.4-5+b3 Downloading dependency 495 of 504: python3-babel:ppc64el=2.17.0-2 Downloading dependency 496 of 504: libarchive-zip-perl:ppc64el=1.68-1 Downloading dependency 497 of 504: libxrender-dev:ppc64el=1:0.9.12-1 Downloading dependency 498 of 504: libboost-dev:ppc64el=1.83.0.2+b2 Downloading dependency 499 of 504: readline-common:ppc64el=8.3-3 Downloading dependency 500 of 504: librhash1:ppc64el=1.4.6-1.1 Downloading dependency 501 of 504: postgresql-common:ppc64el=287 Downloading dependency 502 of 504: libkpathsea6:ppc64el=2025.20250727.75242+ds-5 Downloading dependency 503 of 504: libsasl2-modules-db:ppc64el=2.1.28+dfsg1-10 Downloading dependency 504 of 504: libtsan2:ppc64el=15.2.0-12 env --chdir=/srv/rebuilderd/tmp/rebuilderdeLIy2J/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1761040834 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildIxG2xS/debrebuild.sbuildrc.e7EIuOSeK3q3 sbuild --build=ppc64el --host=ppc64el --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildIxG2xS/debrebuild.tar.wIgOtnDjzN3f --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=rdkit-202503.6 /srv/rebuilderd/tmp/rebuilderdeLIy2J/inputs/rdkit_202503.6-3.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on osuosl6-ppc64el.debian.net +==============================================================================+ | rdkit 202503.6-3 (ppc64el) Thu, 15 Jan 2026 03:32:56 +0000 | +==============================================================================+ Package: rdkit Version: 202503.6-3 Source Version: 202503.6-3 Distribution: unstable Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildIxG2xS/debrebuild.tar.wIgOtnDjzN3f to /srv/rebuilderd/tmp/tmp.sbuild.2h1MiTEgxC... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Thu, 15 Jan 2026 03:33:17 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdeLIy2J/inputs/rdkit_202503.6-3.dsc exists in /srv/rebuilderd/tmp/rebuilderdeLIy2J/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 15 Jan 2026 03:33:19 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: architecture-is-64-bit, architecture-is-little-endian, bison, catch2, cmake (>= 4.1.2-1), debhelper-compat (= 13), dh-python, doxygen, flex, imagemagick, latexmk, libboost-dev, libboost-iostreams-dev, libboost-numpy-dev, libboost-program-options-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libcairo2-dev, libcoordgen-dev, libeigen3-dev, libfreetype-dev, libinchi-dev (>= 1.07.1+dfsg-2), libmaeparser-dev, librsvg2-bin, libsqlite3-dev, pandoc, postgresql-server-dev-all, python3-dev, python3-myst-parser, python3-numpy-dev, python3-pandas, python3-pil | python3-imaging, python3-pytest, python3-recommonmark, python3-sphinx, python3-sqlalchemy, rapidjson-dev, tex-gyre, texlive-fonts-recommended, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended, build-essential Filtered Build-Depends: architecture-is-64-bit, architecture-is-little-endian, bison, catch2, cmake (>= 4.1.2-1), debhelper-compat (= 13), dh-python, doxygen, flex, imagemagick, latexmk, libboost-dev, libboost-iostreams-dev, libboost-numpy-dev, libboost-program-options-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libcairo2-dev, libcoordgen-dev, libeigen3-dev, libfreetype-dev, libinchi-dev (>= 1.07.1+dfsg-2), libmaeparser-dev, librsvg2-bin, libsqlite3-dev, pandoc, postgresql-server-dev-all, python3-dev, python3-myst-parser, python3-numpy-dev, python3-pandas, python3-pil, python3-pytest, python3-recommonmark, python3-sphinx, python3-sqlalchemy, rapidjson-dev, tex-gyre, texlive-fonts-recommended, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-YMiVJR/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Thu, 15 Jan 2026 03:33:22 +0000 | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Build environment Thu, 15 Jan 2026 03:33:22 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.63+deb13-powerpc64le-64k #1 SMP Debian 6.12.63-1 (2025-12-30) ppc64el (ppc64le) Toolchain package versions: binutils_2.45.50.20251209-1 dpkg-dev_1.23.3 g++-15_15.2.0-12 gcc-15_15.2.0-12 libc6-dev_2.42-7 libstdc++-15-dev_15.2.0-12 libstdc++6_15.2.0-12 linux-libc-dev_6.18.3-1 Package versions: adduser_3.154 architecture-properties_0.2.6 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 binutils_2.45.50.20251209-1 binutils-common_2.45.50.20251209-1 binutils-powerpc64le-linux-gnu_2.45.50.20251209-1 bison_2:3.8.2+dfsg-1+b2 bsdextrautils_2.41.3-3 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 catch2_3.7.1-0.6 clang-21_1:21.1.8-1+b1 cmake_4.2.1-2 cmake-data_4.2.1-2 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-12 cpp-15-powerpc64le-linux-gnu_15.2.0-12 cpp-powerpc64le-linux-gnu_4:15.2.0-4 dash_0.5.12-12 debconf_1.5.91 debhelper_13.29 debianutils_5.23.2 dh-autoreconf_21 dh-python_7.20251231 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 docutils-common_0.22.4+dfsg-1 doxygen_1.15.0+ds1-1+b1 dpkg_1.23.3 dpkg-dev_1.23.3 dwz_0.16-2 file_1:5.46-5 findutils_4.10.0-3 flex_2.6.4-8.2+b4 fontconfig_2.17.1-3 fontconfig-config_2.17.1-3 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lmodern_2.005-1 g++_4:15.2.0-4 g++-15_15.2.0-12 g++-15-powerpc64le-linux-gnu_15.2.0-12 g++-powerpc64le-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-12 gcc-15-base_15.2.0-12 gcc-15-powerpc64le-linux-gnu_15.2.0-12 gcc-powerpc64le-linux-gnu_4:15.2.0-4 gettext_0.23.2-1 gettext-base_0.23.2-1 girepository-tools_2.86.3-4 grep_3.12-1 groff-base_1.23.0-10 gzip_1.13-1 hicolor-icon-theme_0.18-2 hostname_3.25 icu-devtools_76.1-4 imagemagick_8:7.1.2.12+dfsg1-1 imagemagick-7-common_8:7.1.2.12+dfsg1-1 imagemagick-7.q16_8:7.1.2.12+dfsg1-1 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 latexmk_1:4.87~ds-1 libabsl20240722_20240722.0-4 libacl1_2.3.2-2+b1 libaom3_3.13.1-2 libapache-pom-java_33-2 libarchive-zip-perl_1.68-1 libarchive13t64_3.8.5-1 libasan8_15.2.0-12 libatomic1_15.2.0-12 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libavif16_1.3.0-1+b2 libbinutils_2.45.50.20251209-1 libblas3_3.12.1-7 libblkid-dev_2.41.3-3 libblkid1_2.41.3-3 libboost-atomic1.83-dev_1.83.0-5+b1 libboost-atomic1.83.0_1.83.0-5+b1 libboost-chrono1.83-dev_1.83.0-5+b1 libboost-chrono1.83.0t64_1.83.0-5+b1 libboost-date-time1.83-dev_1.83.0-5+b1 libboost-date-time1.83.0_1.83.0-5+b1 libboost-dev_1.83.0.2+b2 libboost-iostreams-dev_1.83.0.2+b2 libboost-iostreams1.83-dev_1.83.0-5+b1 libboost-iostreams1.83.0_1.83.0-5+b1 libboost-numpy-dev_1.83.0.2+b2 libboost-numpy1.83-dev_1.83.0-5+b1 libboost-numpy1.83.0_1.83.0-5+b1 libboost-program-options-dev_1.83.0.2+b2 libboost-program-options1.83-dev_1.83.0-5+b1 libboost-program-options1.83.0_1.83.0-5+b1 libboost-python-dev_1.83.0.2+b2 libboost-python1.83-dev_1.83.0-5+b1 libboost-python1.83.0_1.83.0-5+b1 libboost-regex-dev_1.83.0.2+b2 libboost-regex1.83-dev_1.83.0-5+b1 libboost-regex1.83.0_1.83.0-5+b1 libboost-serialization1.83-dev_1.83.0-5+b1 libboost-serialization1.83.0_1.83.0-5+b1 libboost-system-dev_1.83.0.2+b2 libboost-system1.83-dev_1.83.0-5+b1 libboost-system1.83.0_1.83.0-5+b1 libboost-thread-dev_1.83.0.2+b2 libboost-thread1.83-dev_1.83.0-5+b1 libboost-thread1.83.0_1.83.0-5+b1 libboost1.83-dev_1.83.0-5+b1 libbrotli-dev_1.1.0-2+b9 libbrotli1_1.1.0-2+b9 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.42-7 libc-dev-bin_2.42-7 libc-gconv-modules-extra_2.42-7 libc6_2.42-7 libc6-dev_2.42-7 libcairo-gobject2_1.18.4-3 libcairo-script-interpreter2_1.18.4-3 libcairo2_1.18.4-3 libcairo2-dev_1.18.4-3 libcap-ng0_0.8.5-4+b2 libcap2_1:2.75-10+b5 libcatch2-dev_3.7.1-0.6 libcc1-0_15.2.0-12 libclang-common-21-dev_1:21.1.8-1+b1 libclang-cpp21_1:21.1.8-1+b1 libclang1-21_1:21.1.8-1+b1 libcom-err2_1.47.2-3+b8 libcommons-logging-java_1.3.0-2 libcommons-parent-java_56-1 libcoordgen-dev_3.0.2-3 libcoordgen3_3.0.2-3 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.45.50.20251209-1 libctf0_2.45.50.20251209-1 libcurl4t64_8.18.0-1 libdatrie1_0.2.14-1 libdav1d7_1.5.3-1 libdb5.3t64_5.3.28+dfsg2-11 libde265-0_1.0.16-1+b1 libdebconfclient0_0.282+b2 libdebhelper-perl_13.29 libdeflate0_1.23-2 libdpkg-perl_1.23.3 libedit2_3.1-20251016-1 libeigen3-dev_3.4.0-5 libelf1t64_0.194-1 libexpat1_2.7.3-1 libexpat1-dev_2.7.3-1 libffi-dev_3.5.2-3 libffi8_3.5.2-3 libfftw3-double3_3.3.10-2+b1 libfile-stripnondeterminism-perl_1.15.0-1 libfmt10_10.1.1+ds1-4 libfontbox-java_1:1.8.16-5 libfontconfig-dev_2.17.1-3 libfontconfig1_2.17.1-3 libfontenc1_1:1.1.8-1+b2 libfreetype-dev_2.14.1+dfsg-2 libfreetype6_2.14.1+dfsg-2 libfribidi0_1.0.16-5 libgav1-2_0.20.0-2 libgc1_1:8.2.10-1 libgcc-15-dev_15.2.0-12 libgcc-s1_15.2.0-12 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgdk-pixbuf-2.0-0_2.44.4+dfsg-1 libgdk-pixbuf2.0-common_2.44.4+dfsg-1 libgfortran5_15.2.0-12 libgio-2.0-dev_2.86.3-4 libgio-2.0-dev-bin_2.86.3-4 libgirepository-2.0-0_2.86.3-4 libglib2.0-0t64_2.86.3-4 libglib2.0-bin_2.86.3-4 libglib2.0-data_2.86.3-4 libglib2.0-dev_2.86.3-4 libglib2.0-dev-bin_2.86.3-4 libgmp10_2:6.3.0+dfsg-5 libgnutls30t64_3.8.11-3 libgomp1_15.2.0-12 libgraphite2-3_1.3.14-11 libgssapi-krb5-2_1.22.1-2 libharfbuzz0b_12.3.0-4 libheif-plugin-dav1d_1.20.2-2+b4 libheif-plugin-libde265_1.20.2-2+b4 libheif1_1.20.2-2+b4 libhogweed6t64_3.10.2-1 libice-dev_2:1.1.1-1 libice6_2:1.1.1-1 libicu-dev_76.1-4 libicu76_76.1-4 libidn2-0_2.3.8-4 libimagequant0_4.4.1-1 libinchi-dev_1.07.3+dfsg-1 libinchi1.07_1.07.3+dfsg-1 libio-pty-perl_1:1.20-1+b2 libipc-run-perl_20250809.0-1 libisl23_0.27-1 libitm1_15.2.0-12 libjansson4_2.14-2+b4 libjbig0_2.1-6.1+b2 libjpeg62-turbo_1:2.1.5-4 libjs-sphinxdoc_8.2.3-12 libjson-perl_4.10000-1 libjsoncpp26_1.9.6-5 libk5crypto3_1.22.1-2 libkeyutils1_1.6.3-6 libkpathsea6_2025.20250727.75242+ds-5 libkrb5-3_1.22.1-2 libkrb5support0_1.22.1-2 liblapack3_3.12.1-7 liblcms2-2_2.17-1 libldap2_2.6.10+dfsg-1 liblerc4_4.0.0+ds-5 libllvm21_1:21.1.8-1+b1 liblqr-1-0_0.4.2-2.2 liblsan0_15.2.0-12 libltdl7_2.5.4-9 liblua5.4-0_5.4.8-1 liblz4-1_1.10.0-6 liblzma-dev_5.8.2-1 liblzma5_5.8.2-1 liblzo2-2_2.10-3+b1 libmaeparser-dev_1.3.3-3 libmaeparser1_1.3.3-3 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmagickcore-7.q16-10_8:7.1.2.12+dfsg1-1 libmagickwand-7.q16-10_8:7.1.2.12+dfsg1-1 libmd0_1.1.0-2+b1 libmount-dev_2.41.3-3 libmount1_2.41.3-3 libmpc3_1.3.1-2 libmpfi0_1.5.4+ds-4 libmpfr6_4.2.2-2 libncurses-dev_6.6+20251231-1 libncurses6_6.6+20251231-1 libncursesw6_6.6+20251231-1 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-ossl0_1.16.0-1 libnuma1_2.0.19-1 libobjc-15-dev_15.2.0-12 libobjc4_15.2.0-12 libopenjp2-7_2.5.4-1 libp11-kit0_0.25.10-1 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpango-1.0-0_1.57.0-1 libpangocairo-1.0-0_1.57.0-1 libpangoft2-1.0-0_1.57.0-1 libpaper-utils_2.2.5-0.3+b3 libpaper2_2.2.5-0.3+b3 libpcre2-16-0_10.46-1 libpcre2-32-0_10.46-1 libpcre2-8-0_10.46-1 libpcre2-dev_10.46-1 libpcre2-posix3_10.46-1 libpdfbox-java_1:1.8.16-5 libperl5.40_5.40.1-7 libpfm4_4.13.0+git106-g3e4031b-1 libpipeline1_1.5.8-2 libpixman-1-0_0.46.4-1 libpixman-1-dev_0.46.4-1 libpkgconf3_1.8.1-4 libpng-dev_1.6.53-1 libpng16-16t64_1.6.53-1 libpotrace0_1.16-2+b2 libpq-dev_18.1-2 libpq5_18.1-2 libproc2-0_2:4.0.4-9 libpsl5t64_0.21.2-1.1+b1 libptexenc1_2025.20250727.75242+ds-5 libpython3-dev_3.13.9-3 libpython3-stdlib_3.13.9-3 libpython3.13_3.13.11-1+b1 libpython3.13-dev_3.13.11-1+b1 libpython3.13-minimal_3.13.11-1+b1 libpython3.13-stdlib_3.13.11-1+b1 libquadmath0_15.2.0-12 libraqm0_0.10.3-1 librav1e0.8_0.8.1-7 libraw23t64_0.21.5b-1 libreadline8t64_8.3-3 librhash1_1.4.6-1.1 librsvg2-2_2.61.3+dfsg-3 librsvg2-bin_2.61.3+dfsg-3 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2+b1 libselinux-dev_3.9-4+b1 libselinux1_3.9-4+b1 libsemanage-common_3.9-1 libsemanage2_3.9-1+b1 libsepol-dev_3.9-2 libsepol2_3.9-2 libsframe2_2.45.50.20251209-1 libsharpyuv0_1.5.0-0.1 libsm-dev_2:1.2.6-1 libsm6_2:1.2.6-1 libsmartcols1_2.41.3-3 libspdlog1.15_1:1.15.3+ds-1 libsqlite3-0_3.46.1-8 libsqlite3-dev_3.46.1-8 libssh2-1t64_1.11.1-1 libssl-dev_3.5.4-1 libssl3t64_3.5.4-1 libstdc++-15-dev_15.2.0-12 libstdc++6_15.2.0-12 libsvtav1enc2_2.3.0+dfsg-1 libsynctex2_2025.20250727.75242+ds-5 libsysprof-capture-4-dev_49.0-5 libsystemd0_259-1 libtasn1-6_4.20.0-2 libteckit0_2.5.13+ds-1 libtexlua53-5_2025.20250727.75242+ds-5 libtext-charwidth-perl_0.04-11+b4 libtext-wrapi18n-perl_0.06-10 libthai-data_0.1.30-1 libthai0_0.1.30-1 libtiff6_4.7.1-1 libtinfo6_6.6+20251231-1 libtool_2.5.4-9 libtsan2_15.2.0-12 libubsan1_15.2.0-12 libuchardet0_0.0.8-2 libudev1_259-1 libunistring5_1.3-2 libuuid1_2.41.3-3 libuv1t64_1.51.0-2 libwebp7_1.5.0-0.1 libwebpdemux2_1.5.0-0.1 libwebpmux3_1.5.0-0.1 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libx11-dev_2:1.8.12-1 libxapian30_1.4.29-3 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxaw7_2:1.0.16-1 libxcb-render0_1.17.0-2+b1 libxcb-render0-dev_1.17.0-2+b1 libxcb-shm0_1.17.0-2+b1 libxcb-shm0-dev_1.17.0-2+b1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-2 libxdmcp6_1:1.1.5-2 libxext-dev_2:1.3.4-1+b3 libxext6_2:1.3.4-1+b3 libxi6_2:1.8.2-2 libxml2-16_2.15.1+dfsg-2+b1 libxml2-dev_2.15.1+dfsg-2+b1 libxmu6_2:1.1.3-4 libxpm4_1:3.5.17-1+b3 libxrender-dev_1:0.9.12-1 libxrender1_1:0.9.12-1 libxt6t64_1:1.2.1-1.3 libxxhash0_0.8.3-2 libyaml-0-2_0.2.5-2+b1 libyuv0_0.0.1922.20260106-1 libz3-4_4.13.3-1 libz3-dev_4.13.3-1 libzstd1_1.5.7+dfsg-3 libzzip-0-13t64_0.13.78+dfsg.1-0.2 linux-libc-dev_6.18.3-1 llvm-21_1:21.1.8-1+b1 llvm-21-dev_1:21.1.8-1+b1 llvm-21-linker-tools_1:21.1.8-1+b1 llvm-21-runtime_1:21.1.8-1+b1 llvm-21-tools_1:21.1.8-1+b1 lmodern_2.005-1 login.defs_1:4.19.0-4 m4_1.4.20-2 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20250131-2 media-types_14.0.0 native-architecture_0.2.6 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 netbase_6.5 openssl_3.5.4-1 openssl-provider-legacy_3.5.4-1 pandoc_3.1.11.1+ds-4 pandoc-data_3.1.11.1-3 passwd_1:4.19.0-4 patch_2.8-2 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.22 postgresql-client-18_18.1-2 postgresql-client-common_287 postgresql-common_287 postgresql-common-dev_287 postgresql-server-dev-18_18.1-2 postgresql-server-dev-all_287 preview-latex-style_13.2-1.1 procps_2:4.0.4-9 python-babel-localedata_2.17.0-2 python3_3.13.9-3 python3-alabaster_0.7.16-0.1 python3-babel_2.17.0-2 python3-certifi_2026.1.4+ds-1 python3-chardet_5.2.0+dfsg-2 python3-charset-normalizer_3.4.4-2 python3-commonmark_0.9.1-8 python3-dateutil_2.9.0-4 python3-defusedxml_0.7.1-3 python3-dev_3.13.9-3 python3-docutils_0.22.4+dfsg-1 python3-greenlet_3.2.4-3 python3-idna_3.10-1 python3-imagesize_1.4.1-1 python3-iniconfig_2.1.0-2 python3-jinja2_3.1.6-1 python3-linkify-it_2.0.3-1 python3-markdown-it_3.0.0-3 python3-markupsafe_3.0.3-1+b1 python3-mdit-py-plugins_0.5.0-1 python3-mdurl_0.1.2-1 python3-minimal_3.13.9-3 python3-myst-parser_4.0.1-1 python3-numpy_1:2.3.5+ds-3 python3-numpy-dev_1:2.3.5+ds-3 python3-packaging_25.0-2 python3-pandas_2.3.3+dfsg-3 python3-pandas-lib_2.3.3+dfsg-3 python3-pil_12.0.0-1+b1 python3-pluggy_1.6.0-2 python3-pygments_2.19.2+dfsg-1 python3-pytest_9.0.2-2 python3-pytz_2025.2-5 python3-recommonmark_0.7.1+ds-8 python3-requests_2.32.5+dfsg-1 python3-roman-numerals_4.1.0-1 python3-snowballstemmer_3.0.1-1 python3-sphinx_8.2.3-12 python3-sqlalchemy_2.0.45+ds1-1 python3-typing-extensions_4.15.0-2 python3-uc-micro_1.0.3-1 python3-urllib3_2.5.0-1.1 python3-yaml_6.0.3-1 python3.13_3.13.11-1+b1 python3.13-dev_3.13.11-1+b1 python3.13-minimal_3.13.11-1+b1 rapidjson-dev_1.1.0+dfsg2-7.6 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 sed_4.9-2 sensible-utils_0.0.26 sgml-base_1.31+nmu1 shared-mime-info_2.4-5+b3 sphinx-common_8.2.3-12 ssl-cert_1.1.3 sysvinit-utils_3.15-6 t1utils_1.41-4 tar_1.35+dfsg-3.1 tex-common_6.20 tex-gyre_20180621-7 texlive-base_2025.20251127-1 texlive-binaries_2025.20250727.75242+ds-5 texlive-fonts-recommended_2025.20251127-1 texlive-latex-base_2025.20251127-1 texlive-latex-extra_2025.20251127-2 texlive-latex-recommended_2025.20251127-1 texlive-luatex_2025.20251127-1 texlive-pictures_2025.20251127-1 tzdata_2025c-3 ucf_3.0052 util-linux_2.41.3-3 uuid-dev_2.41.3-3 x11-common_1:7.7+26 x11proto-dev_2024.1-1 xdg-utils_1.2.1-2 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+7 xml-core_0.19 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.6.0-1 xz-utils_5.8.2-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b2 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b2 +------------------------------------------------------------------------------+ | Build Thu, 15 Jan 2026 03:33:22 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: rdkit Binary: python3-rdkit, rdkit-doc, rdkit-data, librdkit1t64, librdkit-dev, postgresql-18-rdkit Architecture: any all Version: 202503.6-3 Maintainer: Debichem Team Uploaders: Michael Banck , Andrius Merkys , Roland Mas , Homepage: http://www.rdkit.org Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/debichem-team/rdkit Vcs-Git: https://salsa.debian.org/debichem-team/rdkit.git Testsuite: autopkgtest Testsuite-Triggers: dpkg-dev, postgresql-common-dev Build-Depends: architecture-is-64-bit, architecture-is-little-endian, bison, catch2, cmake (>= 4.1.2-1), debhelper-compat (= 13), dh-python, doxygen, flex, imagemagick, latexmk, libboost-dev, libboost-iostreams-dev, libboost-numpy-dev, libboost-program-options-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libcairo2-dev, libcoordgen-dev, libeigen3-dev, libfreetype-dev, libinchi-dev (>= 1.07.1+dfsg-2), libmaeparser-dev, librsvg2-bin, libsqlite3-dev, pandoc, postgresql-server-dev-all, python3-dev, python3-myst-parser, python3-numpy-dev, python3-pandas, python3-pil | python3-imaging, python3-pytest, python3-recommonmark, python3-sphinx, python3-sqlalchemy, rapidjson-dev, tex-gyre, texlive-fonts-recommended, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended Package-List: librdkit-dev deb libdevel optional arch=any librdkit1t64 deb libs optional arch=any postgresql-18-rdkit deb database optional arch=any python3-rdkit deb python optional arch=any rdkit-data deb science optional arch=all rdkit-doc deb doc optional arch=all Checksums-Sha1: 8980fdc9e0a1aaed921ba513dcc175df8299b0b7 64217064 rdkit_202503.6.orig.tar.xz b180f3137ec8c76de1583d5577aa67daeb965943 49300 rdkit_202503.6-3.debian.tar.xz Checksums-Sha256: 88fa533178ab825e336ad22a6d0b8f1d392f038a99dec8787f25ad27d4a5544a 64217064 rdkit_202503.6.orig.tar.xz 6d69ea5291ed8e5a98a35508878e44dac3f0bc34f31978ef05c6fd0472987efa 49300 rdkit_202503.6-3.debian.tar.xz Files: 93941122f9c12328a05e5489ed103015 64217064 rdkit_202503.6.orig.tar.xz f31d6123bb37d17143b569bbe2bafa2c 49300 rdkit_202503.6-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmj3Wu8SHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKH/38P/iBZXJiFeFUyo5GPEIwbbtTWt4a+4pn+ pz9wQMbtEaP83H1sIjnDgEYM71qYXzZHejxmz2kFnYT/GSy6yoM5Ux1pNN4WYRwW iFW1zCgFlIT98u89b+GpzRdCetf4wYbHbu4wP07k6BgWwhykov2Lw3HGwigoDceT hinOcMfbgYSFw+WN7WG11/7Cu1CoDmHfEkjrB/ip5kwB7TXdICnRoIHXsw3UQ1vF XIp6z42En6nd4JOsbhGNz3mk+QemVUSUmjXa34CigoIp+G8l9Lyj4vTPI1ukF23L vEXzVneYa7QkjH2QXiqFzuQ1FyTkXP5sj8vcMBvQCZxeFChNJ/L8/JNae3gOnkZL j0YxuN2kOLdJjsQbZ9qdF7FTw0RcJQltNvSPN7ds1oQWvL5FwFYwN+B0ePcZM5SU 5P/awaywtw0WxhAGhEd8aSzZtXvYiL1DO6ng+SEQme8q5H+yu38sSQYaftBTAOWc 34+01Gc1kNXdR7NG5lbUs1kniVPlaY1N+ndeY+HCzD1X9EthiXo957pZrbMWsXwh mG6wR3Zok9Xl2qdYj0hHZnj64nyQEPzUgrndZrKN7TH2FIcaH/qYevUJEmYnslGu VppjeqDfwZRYVWLgKnN4snlxyhTrUy9jQM//6IZ8SyZnSBojA6QYCm0o9bmkLK6C fRS8kEzAnfSl =mPCJ -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./rdkit_202503.6-3.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./rdkit_202503.6-3.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting rdkit in /build/reproducible-path/rdkit-202503.6 dpkg-source: info: unpacking rdkit_202503.6.orig.tar.xz dpkg-source: info: unpacking rdkit_202503.6-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying NoDownloads.patch dpkg-source: info: applying postgres_Makefile_fixes.patch dpkg-source: info: applying sphinx_imgconverter.patch dpkg-source: info: applying postgres_alternative_test_outputs.patch dpkg-source: info: applying sphinx_compile_fixes.patch dpkg-source: info: applying extra_float_digits dpkg-source: info: applying postgres_cmakelists_fixes.patch dpkg-source: info: applying disable_pgsql_test.patch dpkg-source: info: applying fix_inchi_linking.patch dpkg-source: info: applying disable_inchi_test.patch dpkg-source: info: applying disable_python_test.patch dpkg-source: info: applying better_enums.patch dpkg-source: info: applying fix-shebangs.patch dpkg-source: info: applying remove-badges.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1761040834 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package rdkit dpkg-buildpackage: info: source version 202503.6-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean pg_buildext checkcontrol dh clean --with python3 --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/rdkit-202503.6' find /build/reproducible-path/rdkit-202503.6 -name "*.pyc" | xargs rm -f rm -f -r Projects/DbCLI/testData/bzr/ rdkit/Chem/inchi.py rm -f -r Docs/Book/_build Code/docs rdkit/docs Code/doxygen_sqlite3.db rm -f \ Code/ForceField/MMFF/test_data/MMFF94_dative_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_dative_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_reference.log \ Code/ForceField/MMFF/test_data/MMFF94s_reference.log \ Code/ForceField/MMFF/test_data/testMMFFForceField.log \ Code/GraphMol/Depictor/test_data/cis_trans_cpp.out.sdf \ Code/GraphMol/Depictor/test_data/collisions.out.sdf \ Code/GraphMol/Depictor/test_data/first_200.out.sdf \ Code/GraphMol/Depictor/test_data/test1.out.sdf \ Code/GraphMol/FileParsers/test_data/blah.sdf \ Code/GraphMol/FileParsers/test_data/cdk2_stereo.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.tdt \ Code/GraphMol/FileParsers/test_data/outNCI_first_200.props.sdf \ Code/GraphMol/FileParsers/test_data/outSmiles.csv \ Code/GraphMol/ForceFieldHelpers/UFF/test_data/Issue62.sdf \ Code/GraphMol/MolAlign/test_data/ref_e2_pyCrippenO3A.sdf \ Code/GraphMol/SLNParse/lex.yysln.cpp \ Code/GraphMol/SLNParse/sln.tab.cpp \ Code/GraphMol/SLNParse/sln.tab.hpp \ Code/GraphMol/SmilesParse/lex.yysmarts.cpp \ Code/GraphMol/SmilesParse/lex.yysmiles.cpp \ Code/GraphMol/SmilesParse/smarts.tab.cpp \ Code/GraphMol/SmilesParse/smarts.tab.hpp \ Code/GraphMol/SmilesParse/smiles.tab.cpp \ Code/GraphMol/SmilesParse/smiles.tab.hpp \ Code/GraphMol/Wrap/test_data/outNCI_few.sdf \ Code/GraphMol/Wrap/test_data/outSmiles.txt \ Code/RDGeneral/versions.cpp \ Docs/Book/Cartridge.rst \ Docs/Book/Install.rst \ Docs/Book/Overview.rst \ rdkit/ML/Data/test_data/testgeneral.dat.pkl \ rdkit/ML/Data/test_data/testquant.qdat.pkl rm -f Code/RDGeneral/versions.h rdkit/sping/tests/testallps.ps dh_auto_clean rm -f -rf /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-* make[1]: Leaving directory '/build/reproducible-path/rdkit-202503.6' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --with python3 --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/rdkit-202503.6' dh_auto_configure -- -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_OPTIMIZE_POPCNT=OFF -DRDK_USE_URF=OFF -DRDK_INSTALL_COMIC_FONTS=OFF -DRDK_BUILD_CAIRO_SUPPORT=ON -DRDK_BUILD_PUBCHEMSHAPE_SUPPORT=OFF -DRDK_BUILD_XYZ2MOL_SUPPORT=ON -DRDK_BUILD_CHEMDRAW_SUPPORT=OFF -DBoost_NO_BOOST_CMAKE=TRUE -DCMAKE_INSTALL_PREFIX=/usr -DCATCH_DIR=/usr/include/catch2 -DRDK_BUILD_PGSQL=ON -DRDK_PGSQL_STATIC=OFF -DPostgreSQL_CONFIG=/usr/bin/pg_config -DPostgreSQL_TYPE_INCLUDE_DIR="/usr/include/postgresql/18/server" -DCMAKE_CTEST_ARGUMENTS=--timeout=7200 -DPYTHON_EXECUTABLE=/usr/bin/python3.13 ../ cd obj-powerpc64le-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/powerpc64le-linux-gnu -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_OPTIMIZE_POPCNT=OFF -DRDK_USE_URF=OFF -DRDK_INSTALL_COMIC_FONTS=OFF -DRDK_BUILD_CAIRO_SUPPORT=ON -DRDK_BUILD_PUBCHEMSHAPE_SUPPORT=OFF -DRDK_BUILD_XYZ2MOL_SUPPORT=ON -DRDK_BUILD_CHEMDRAW_SUPPORT=OFF -DBoost_NO_BOOST_CMAKE=TRUE -DCMAKE_INSTALL_PREFIX=/usr -DCATCH_DIR=/usr/include/catch2 -DRDK_BUILD_PGSQL=ON -DRDK_PGSQL_STATIC=OFF -DPostgreSQL_CONFIG=/usr/bin/pg_config -DPostgreSQL_TYPE_INCLUDE_DIR=/usr/include/postgresql/18/server -DCMAKE_CTEST_ARGUMENTS=--timeout=7200 -DPYTHON_EXECUTABLE=/usr/bin/python3.13 ../ .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Inchi: /usr/lib/powerpc64le-linux-gnu/libinchi.so -- Found Python3: /usr/bin/python3 (found version "3.13.11") found components: Interpreter Development.Module NumPy Python Install directory /usr/lib/python3.13/site-packages nbval not found, disabling the jupyter tests -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found PostgreSQL: /usr/lib/powerpc64le-linux-gnu/libpq.so (found version "18.1") == Using strict rotor definition -- Found Python3: /usr/bin/python3 (found version "3.13.11") found components: Interpreter -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Found Cairo: /usr/include/cairo -- Found Freetype: /usr/lib/powerpc64le-linux-gnu/libfreetype.so (found version "2.14.1") postgres: /usr/include/postgresql;/usr/include/postgresql/18/server CMake Warning (dev) at Code/PgSQL/rdkit/CMakeLists.txt:308 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at Code/PgSQL/rdkit/CMakeLists.txt:308 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at Code/PgSQL/rdkit/CMakeLists.txt:308 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done (1.8s) -- Generating done (1.0s) CMake Warning: Manually-specified variables were not used by the project: Boost_NO_BOOST_CMAKE CATCH_DIR CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PYTHON_EXECUTABLE -- Build files have been written to: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu for v in $(pg_buildext supported-versions); do \ (mkdir -p Code/PgSQL/rdkit/build-$v && cd Code/PgSQL/rdkit/build-$v && cmake -DPostgreSQL_CONFIG=/usr/lib/postgresql/$v/bin/pg_config -DRDK_PGSQL_STATIC=OFF -DPostgreSQL_TYPE_INCLUDE_DIR="/usr/include/postgresql/$v/server" -DCMAKE_VERBOSE_MAKEFILE=1 -DRDKit_CodeDir=../../../Code ../); \ done -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PostgreSQL: /usr/lib/powerpc64le-linux-gnu/libpq.so (found version "18.1") postgres: /usr/include/postgresql;/usr/include/postgresql/18/server CMake Warning (dev) at CMakeLists.txt:308 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:308 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:308 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done (0.5s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18 make[1]: Leaving directory '/build/reproducible-path/rdkit-202503.6' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/rdkit-202503.6' dh_auto_build cd obj-powerpc64le-linux-gnu && make -j8 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/rdkit-202503.6 -B/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/CMakeFiles /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/External/INCHI-API /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake "--color=" inchi_support make -f External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build.make External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/External/CoordGen /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake "--color=" coordgen_support make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake "--color=" RDGeneral make -f External/GA/CMakeFiles/ga.dir/build.make External/GA/CMakeFiles/ga.dir/depend make -f Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build.make Code/RDGeneral/CMakeFiles/rdkitCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/External/GA /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/GA /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/GA/CMakeFiles/ga.dir/DependInfo.cmake "--color=" ga make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/External/RingFamilies /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/RingFamilies /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/DependInfo.cmake "--color=" ringdecomposerlib_support make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/CMakeFiles/rdkitCatch.dir/DependInfo.cmake "--color=" rdkitCatch make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/RDStreams /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDStreams /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDStreams/CMakeFiles/RDStreams.dir/DependInfo.cmake "--color=" RDStreams make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ML/Cluster/Murtagh /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Cluster/Murtagh /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake "--color=" hc make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /build/reproducible-path/rdkit-202503.6/External/INCHI-API/python/inchi.py /build/reproducible-path/rdkit-202503.6/rdkit/Chem/inchi.py make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f External/GA/CMakeFiles/ga.dir/build.make External/GA/CMakeFiles/ga.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'. make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build.make External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build.make Code/RDGeneral/CMakeFiles/rdkitCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Nothing to be done for 'External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build'. make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o -MF CMakeFiles/RDGeneral.dir/Invariant.cpp.o.d -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Invariant.cpp make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 0%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/GA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o -MF CMakeFiles/ga.dir/ga/StringChromosome.cpp.o.d -o CMakeFiles/ga.dir/ga/StringChromosome.cpp.o -c /build/reproducible-path/rdkit-202503.6/External/GA/ga/StringChromosome.cpp [ 0%] Built target coordgen_support [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/rdkitCatch.dir/catch_main.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/RDGeneral/CMakeFiles/rdkitCatch.dir/catch_main.cpp.o -MF CMakeFiles/rdkitCatch.dir/catch_main.cpp.o.d -o CMakeFiles/rdkitCatch.dir/catch_main.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/catch_main.cpp [ 0%] Building CXX object Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o [ 0%] Built target ringdecomposerlib_support cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDStreams && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RDSTREAMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDStreams_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o -MF CMakeFiles/RDStreams.dir/streams.cpp.o.d -o CMakeFiles/RDStreams.dir/streams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDStreams/streams.cpp [ 0%] Built target inchi_support [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o -MF CMakeFiles/hc.dir/hc.c.o.d -o CMakeFiles/hc.dir/hc.c.o -c /build/reproducible-path/rdkit-202503.6/Code/ML/Cluster/Murtagh/hc.c cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o -MF CMakeFiles/RDGeneral.dir/types.cpp.o.d -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/types.cpp [ 0%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/GA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o -MF CMakeFiles/ga.dir/ga/Chromosome.cpp.o.d -o CMakeFiles/ga.dir/ga/Chromosome.cpp.o -c /build/reproducible-path/rdkit-202503.6/External/GA/ga/Chromosome.cpp [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -MF CMakeFiles/hc.dir/hcdriver.c.o.d -o CMakeFiles/hc.dir/hcdriver.c.o -c /build/reproducible-path/rdkit-202503.6/Code/ML/Cluster/Murtagh/hcdriver.c [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o -MF CMakeFiles/RDGeneral.dir/utils.cpp.o.d -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/utils.cpp [ 0%] Linking C shared library ../../../../lib/libRDKithc.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/hc.dir/link.d -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2025.03.6 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2025.03.6 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 0%] Built target hc [ 0%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/GA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o -MF CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o.d -o CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o -c /build/reproducible-path/rdkit-202503.6/External/GA/ga/IntegerStringChromosomePolicy.cpp [ 0%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/GA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o -MF CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o.d -o CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o -c /build/reproducible-path/rdkit-202503.6/External/GA/ga/BinaryStringChromosomePolicy.cpp [ 1%] Building CXX object External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/GA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o -MF CMakeFiles/ga.dir/util/RandomUtil.cpp.o.d -o CMakeFiles/ga.dir/util/RandomUtil.cpp.o -c /build/reproducible-path/rdkit-202503.6/External/GA/util/RandomUtil.cpp [ 1%] Building CXX object External/GA/CMakeFiles/ga.dir/util/Util.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/GA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Dga_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT External/GA/CMakeFiles/ga.dir/util/Util.cpp.o -MF CMakeFiles/ga.dir/util/Util.cpp.o.d -o CMakeFiles/ga.dir/util/Util.cpp.o -c /build/reproducible-path/rdkit-202503.6/External/GA/util/Util.cpp [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -MF CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDGeneralExceptions.cpp [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o -MF CMakeFiles/RDGeneral.dir/RDLog.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDLog.cpp [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -MF CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o.d -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/LocaleSwitcher.cpp [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o -MF CMakeFiles/RDGeneral.dir/versions.cpp.o.d -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/versions.cpp [ 2%] Linking CXX shared library ../../lib/libRDKitga.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/GA && /usr/bin/cmake -E cmake_link_script CMakeFiles/ga.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ga.dir/link.d -Wl,-soname,libRDKitga.so.1 -o ../../lib/libRDKitga.so.1.2025.03.6 CMakeFiles/ga.dir/ga/StringChromosome.cpp.o CMakeFiles/ga.dir/ga/Chromosome.cpp.o CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/util/RandomUtil.cpp.o CMakeFiles/ga.dir/util/Util.cpp.o /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/GA && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitga.so.1.2025.03.6 ../../lib/libRDKitga.so.1 ../../lib/libRDKitga.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 2%] Built target ga [ 2%] Linking CXX static library librdkitCatch.a cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/cmake -P CMakeFiles/rdkitCatch.dir/cmake_clean_target.cmake cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkitCatch.dir/link.txt --verbose=1 /usr/bin/ar qc librdkitCatch.a CMakeFiles/rdkitCatch.dir/catch_main.cpp.o /usr/bin/ranlib librdkitCatch.a make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 2%] Built target rdkitCatch [ 2%] Linking CXX shared library ../../lib/libRDKitRDStreams.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDStreams && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDStreams.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/RDStreams.dir/link.d -Wl,-soname,libRDKitRDStreams.so.1 -o ../../lib/libRDKitRDStreams.so.1.2025.03.6 CMakeFiles/RDStreams.dir/streams.cpp.o /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDStreams && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDStreams.so.1.2025.03.6 ../../lib/libRDKitRDStreams.so.1 ../../lib/libRDKitRDStreams.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 2%] Built target RDStreams [ 2%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/RDGeneral.dir/link.d -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2025.03.6 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -ldl /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 2%] Built target RDGeneral make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Numerics/EigenSolvers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/EigenSolvers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake "--color=" EigenSolvers make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DataStructs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake "--color=" DataStructs make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake "--color=" testDict make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/RDBoost /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDBoost /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake "--color=" RDBoost make -f Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/build.make Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/depend cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake "--color=" testRDValue make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/DependInfo.cmake "--color=" testConcurrentQueue make -f Code/RDGeneral/CMakeFiles/logTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/logTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/CMakeFiles/logTestsCatch.dir/DependInfo.cmake "--color=" logTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/DependInfo.cmake "--color=" dictTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/build.make Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/RDGeneral/CMakeFiles/logTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/logTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build.make Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/build [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/RDGeneral/CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -MF CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o.d -o CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/testConcurrentQueue.cpp [ 2%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -MF CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o.d -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o -MF CMakeFiles/testDict.dir/testDict.cpp.o.d -o CMakeFiles/testDict.dir/testDict.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/testDict.cpp [ 2%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDBoost && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/python3.13 -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o -MF CMakeFiles/RDBoost.dir/Wrap.cpp.o.d -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDBoost/Wrap.cpp [ 2%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o -MF CMakeFiles/DataStructs.dir/BitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/BitVect.cpp [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o -MF CMakeFiles/testRDValue.dir/testRDValue.cpp.o.d -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/testRDValue.cpp [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/RDGeneral/CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o -MF CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o.d -o CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/catch_logs.cpp [ 4%] Building CXX object Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/RDGeneral/CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -MF CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o.d -o CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/catch_dict.cpp [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -MF CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/SparseBitVect.cpp [ 4%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/EigenSolvers.dir/link.d -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 4%] Built target EigenSolvers make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Numerics /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake "--color=" testMatrices make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 5%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o -MF CMakeFiles/testMatrices.dir/testMatrices.cpp.o.d -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Numerics/testMatrices.cpp [ 5%] Linking CXX executable testConcurrentQueue cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testConcurrentQueue.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testConcurrentQueue.dir/link.d CMakeFiles/testConcurrentQueue.dir/testConcurrentQueue.cpp.o -o testConcurrentQueue librdkitCatch.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/libCatch2.a /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 5%] Built target testConcurrentQueue make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Catalogs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Catalogs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake "--color=" Catalogs make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Catalogs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o -MF CMakeFiles/Catalogs.dir/Catalog.cpp.o.d -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Catalogs/Catalog.cpp [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -MF CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/ExplicitBitVect.cpp [ 6%] Linking CXX executable logTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/logTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/logTestsCatch.dir/link.d CMakeFiles/logTestsCatch.dir/catch_logs.cpp.o -o logTestsCatch librdkitCatch.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/libCatch2.a /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 6%] Built target logTestsCatch make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Query /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Query /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake "--color=" testQuery make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 6%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Query && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/Query/CMakeFiles/testQuery.dir/test.cpp.o -MF CMakeFiles/testQuery.dir/test.cpp.o.d -o CMakeFiles/testQuery.dir/test.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Query/test.cpp [ 6%] Linking CXX shared library ../../lib/libRDKitRDBoost.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/RDBoost.dir/link.d -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2025.03.6 CMakeFiles/RDBoost.dir/Wrap.cpp.o ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so [ 6%] Linking CXX executable dictTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/dictTestsCatch.dir/link.txt --verbose=1 [ 6%] Built target RDBoost make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DataManip/MetricMatrixCalc /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake "--color=" testMatCalc make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 6%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -MF CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o.d -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dictTestsCatch.dir/link.d CMakeFiles/dictTestsCatch.dir/catch_dict.cpp.o -o dictTestsCatch librdkitCatch.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/libCatch2.a /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 6%] Built target dictTestsCatch make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake "--color=" SimDivPickers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/DistPicker.cpp [ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Catalogs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogParams.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Catalogs/CatalogParams.cpp [ 7%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Catalogs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Catalogs/CatalogEntry.cpp [ 7%] Linking CXX executable testMatCalc cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMatCalc.dir/link.d CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 7%] Built target testMatCalc make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ML/Cluster/Murtagh /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Cluster/Murtagh /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake "--color=" Clustering make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 7%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o -MF CMakeFiles/Clustering.dir/Clustering.cpp.o.d -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ML/Cluster/Murtagh/Clustering.cpp [ 7%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Catalogs.dir/link.d -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2025.03.6 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 7%] Built target Catalogs make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/RDBoost/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDBoost/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake "--color=" rdBase make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 8%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDBoost/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o -MF CMakeFiles/rdBase.dir/RDBase.cpp.o.d -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/RDBoost/Wrap/RDBase.cpp [ 8%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/MaxMinPicker.cpp [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o -MF CMakeFiles/DataStructs.dir/Utils.cpp.o.d -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Utils.cpp [ 9%] Linking CXX executable testMatrices cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMatrices.dir/link.d CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../RDGeneral/librdkitCatch.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/libCatch2.a /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 9%] Built target testMatrices [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o -MF CMakeFiles/DataStructs.dir/base64.cpp.o.d -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/base64.cpp [ 9%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/HierarchicalClusterPicker.cpp [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o -MF CMakeFiles/DataStructs.dir/BitOps.cpp.o.d -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/BitOps.cpp [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/DiscreteDistMat.cpp [ 9%] Linking CXX executable testRDValue cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1 [ 9%] Linking CXX executable testDict cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testDict.dir/link.d CMakeFiles/testDict.dir/testDict.cpp.o -o testDict librdkitCatch.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/libCatch2.a /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 9%] Built target testDict [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/DiscreteValueVect.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testRDValue.dir/link.d CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue librdkitCatch.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/libCatch2.a /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 9%] Built target testRDValue [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/FPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/FPBReader.cpp [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/MultiFPBReader.cpp [ 9%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/Clustering.dir/link.d -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libRDKithc.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 9%] Built target Clustering [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/RealValueVect.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/RealValueVect.cpp.o -MF CMakeFiles/DataStructs.dir/RealValueVect.cpp.o.d -o CMakeFiles/DataStructs.dir/RealValueVect.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/RealValueVect.cpp [ 9%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SimDivPickers.dir/link.d -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2025.03.6 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2025.03.6 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 9%] Built target SimDivPickers make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake "--color=" testSimDivPickers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 9%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -MF CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o.d -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/testPickers.cpp [ 9%] Linking CXX executable testQuery cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testQuery.dir/link.d CMakeFiles/testQuery.dir/test.cpp.o -o testQuery ../RDGeneral/librdkitCatch.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/libCatch2.a /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 9%] Built target testQuery [ 9%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 [ 9%] Linking CXX executable testSimDivPickers cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/DataStructs.dir/link.d -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2025.03.6 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o CMakeFiles/DataStructs.dir/RealValueVect.cpp.o ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSimDivPickers.dir/link.d CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSimDivPickers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKithc.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 9%] Built target DataStructs make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Geometry /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake "--color=" RDGeometryLib make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DataStructs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake "--color=" testDataStructs make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DataStructs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake "--color=" testFPB [ 9%] Built target testSimDivPickers make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DataStructs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake "--color=" testMultiFPB make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make -f Code/DataStructs/CMakeFiles/catchDataStructs.dir/build.make Code/DataStructs/CMakeFiles/catchDataStructs.dir/depend make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DataStructs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/CMakeFiles/catchDataStructs.dir/DependInfo.cmake "--color=" catchDataStructs make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake "--color=" cDataStructs make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DataManip/MetricMatrixCalc/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake "--color=" rdMetricMatrixCalc make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o -MF CMakeFiles/RDGeometryLib.dir/point.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/point.cpp make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DataStructs/CMakeFiles/catchDataStructs.dir/build.make Code/DataStructs/CMakeFiles/catchDataStructs.dir/build make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build [ 10%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o [ 10%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o [ 10%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -MF CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o.d -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/testDatastructs.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -MF CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o.d -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/testMultiFPB.cpp [ 10%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o [ 11%] Building CXX object Code/DataStructs/CMakeFiles/catchDataStructs.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/DataStructs/CMakeFiles/catchDataStructs.dir/catch_tests.cpp.o -MF CMakeFiles/catchDataStructs.dir/catch_tests.cpp.o.d -o CMakeFiles/catchDataStructs.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/catch_tests.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o -MF CMakeFiles/testFPB.dir/testFPB.cpp.o.d -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/testFPB.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -MF CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o.d -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp [ 11%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -MF CMakeFiles/cDataStructs.dir/DataStructs.cpp.o.d -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/DataStructs.cpp [ 11%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/Transform2D.cpp [ 11%] Linking CXX executable catchDataStructs cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/catchDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/catchDataStructs.dir/link.d CMakeFiles/catchDataStructs.dir/catch_tests.cpp.o -o catchDataStructs ../RDGeneral/librdkitCatch.a ../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 11%] Built target catchDataStructs make -f Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/build.make Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/DependInfo.cmake "--color=" pickersTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/build.make Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 12%] Building CXX object Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/SimDivPickers/CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/catch_tests.cpp [ 12%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 [ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/DiscreteValueVect.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMetricMatrixCalc.dir/link.d -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 12%] Built target rdMetricMatrixCalc make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake "--color=" rdSimDivPickers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 12%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/Wrap/MaxMinPicker.cpp [ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/Transform3D.cpp [ 12%] Linking CXX executable testFPB cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testFPB.dir/link.d CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB ../RDGeneral/librdkitCatch.a ../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 12%] Built target testFPB make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake "--color=" InfoTheory make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 12%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -MF CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o.d -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/InfoBitRanker.cpp [ 12%] Linking CXX executable pickersTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/pickersTestsCatch.dir/link.txt --verbose=1 [ 12%] Linking CXX executable testMultiFPB cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pickersTestsCatch.dir/link.d CMakeFiles/pickersTestsCatch.dir/catch_tests.cpp.o -o pickersTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSimDivPickers.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKithc.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 12%] Built target pickersTestsCatch [ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -MF CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/SparseIntVect.cpp [ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/UniformGrid3D.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMultiFPB.dir/link.d CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -o testMultiFPB ../RDGeneral/librdkitCatch.a ../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 12%] Built target testMultiFPB [ 12%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/Wrap/LeaderPicker.cpp [ 12%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/InfoTheory.dir/link.d -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2025.03.6 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2025.03.6 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 12%] Built target InfoTheory make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake "--color=" rdInfoTheory make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 12%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -MF CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o.d -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/RealValueVect.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/RealValueVect.cpp.o -MF CMakeFiles/cDataStructs.dir/RealValueVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/RealValueVect.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/RealValueVect.cpp [ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformRealValueGrid3D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformRealValueGrid3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/UniformRealValueGrid3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/UniformRealValueGrid3D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/UniformRealValueGrid3D.cpp [ 13%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp [ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -MF CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/GridUtils.cpp make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ML/Data /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Data /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake "--color=" cQuantize make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Data && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o -MF CMakeFiles/cQuantize.dir/cQuantize.cpp.o.d -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ML/Data/cQuantize.cpp [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/wrap_SparseBV.cpp [ 13%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -MF CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o.d -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp [ 13%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp [ 13%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/RDGeometryLib.dir/link.d -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformRealValueGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Built target RDGeometryLib make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake "--color=" GraphMol make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o -MF CMakeFiles/GraphMol.dir/Atom.cpp.o.d -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Atom.cpp [ 13%] Linking CXX executable testDataStructs cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testDataStructs.dir/link.d CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../RDGeneral/librdkitCatch.a ../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Built target testDataStructs make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Numerics/Alignment /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake "--color=" Alignment make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o -MF CMakeFiles/Alignment.dir/AlignPoints.cpp.o.d -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Numerics/Alignment/AlignPoints.cpp [ 13%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/cQuantize.dir/link.d -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libRDKitInfoTheory.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Built target cQuantize [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp [ 13%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Alignment.dir/link.d -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2025.03.6 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Built target Alignment make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Geometry /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake "--color=" testTransforms make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o -MF CMakeFiles/testTransforms.dir/testTransforms.cpp.o.d -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/testTransforms.cpp [ 13%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdSimDivPickers.dir/link.d -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libRDKitSimDivPickers.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKithc.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Built target rdSimDivPickers make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Geometry /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake "--color=" testGrid make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o -MF CMakeFiles/testGrid.dir/testGrid.cpp.o.d -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/testGrid.cpp [ 13%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -MF CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o.d -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/wrap_BitOps.cpp [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -MF CMakeFiles/GraphMol.dir/QueryAtom.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryAtom.cpp [ 13%] Linking CXX executable testGrid cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testGrid.dir/link.d CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid ../RDGeneral/librdkitCatch.a ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Built target testGrid make -f Code/Geometry/CMakeFiles/testRealValueGrid.dir/build.make Code/Geometry/CMakeFiles/testRealValueGrid.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Geometry /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/CMakeFiles/testRealValueGrid.dir/DependInfo.cmake "--color=" testRealValueGrid make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Geometry/CMakeFiles/testRealValueGrid.dir/build.make Code/Geometry/CMakeFiles/testRealValueGrid.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Building CXX object Code/Geometry/CMakeFiles/testRealValueGrid.dir/testRealValueGrid.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/Geometry/CMakeFiles/testRealValueGrid.dir/testRealValueGrid.cpp.o -MF CMakeFiles/testRealValueGrid.dir/testRealValueGrid.cpp.o.d -o CMakeFiles/testRealValueGrid.dir/testRealValueGrid.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/testRealValueGrid.cpp [ 13%] Linking CXX executable testTransforms cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testTransforms.dir/link.d CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms ../RDGeneral/librdkitCatch.a ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Built target testTransforms make -f Code/Geometry/CMakeFiles/geometryTestsCatch.dir/build.make Code/Geometry/CMakeFiles/geometryTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Geometry /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/CMakeFiles/geometryTestsCatch.dir/DependInfo.cmake "--color=" geometryTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Geometry/CMakeFiles/geometryTestsCatch.dir/build.make Code/Geometry/CMakeFiles/geometryTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 13%] Building CXX object Code/Geometry/CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/Geometry/CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/catch_tests.cpp [ 14%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdInfoTheory.dir/link.d -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libRDKitInfoTheory.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 14%] Built target rdInfoTheory make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Geometry/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake "--color=" rdGeometry make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o -MF CMakeFiles/rdGeometry.dir/Point.cpp.o.d -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/Wrap/Point.cpp [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/wrap_FPB.cpp [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o -MF CMakeFiles/GraphMol.dir/QueryBond.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryBond.cpp [ 14%] Linking CXX shared module ../../../rdkit/rdBase.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdBase.dir/link.d -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 14%] Built target rdBase make -f Code/Numerics/CMakeFiles/testConrec.dir/build.make Code/Numerics/CMakeFiles/testConrec.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Numerics /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/CMakeFiles/testConrec.dir/DependInfo.cmake "--color=" testConrec make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Numerics/CMakeFiles/testConrec.dir/build.make Code/Numerics/CMakeFiles/testConrec.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 14%] Building CXX object Code/Numerics/CMakeFiles/testConrec.dir/testConrec.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/Numerics/CMakeFiles/testConrec.dir/testConrec.cpp.o -MF CMakeFiles/testConrec.dir/testConrec.cpp.o.d -o CMakeFiles/testConrec.dir/testConrec.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Numerics/testConrec.cpp [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o -MF CMakeFiles/GraphMol.dir/Bond.cpp.o.d -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Bond.cpp [ 14%] Linking CXX executable geometryTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/geometryTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/geometryTestsCatch.dir/link.d CMakeFiles/geometryTestsCatch.dir/catch_tests.cpp.o -o geometryTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 14%] Built target geometryTestsCatch make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Numerics/Alignment /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake "--color=" testAlignment make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o -MF CMakeFiles/testAlignment.dir/testAlignment.cpp.o.d -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Numerics/Alignment/testAlignment.cpp [ 15%] Linking CXX executable testRealValueGrid cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRealValueGrid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testRealValueGrid.dir/link.d CMakeFiles/testRealValueGrid.dir/testRealValueGrid.cpp.o -o testRealValueGrid ../RDGeneral/librdkitCatch.a ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/libCatch2.a -ldl /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Built target testRealValueGrid make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Numerics/Alignment/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake "--color=" rdAlignment make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -MF CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o.d -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Numerics/Alignment/Wrap/rdAlignment.cpp [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o -MF CMakeFiles/GraphMol.dir/MolOps.cpp.o.d -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.cpp [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o -MF CMakeFiles/GraphMol.dir/FindRings.cpp.o.d -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FindRings.cpp [ 15%] Linking CXX executable testConrec cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testConrec.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testConrec.dir/link.d CMakeFiles/testConrec.dir/testConrec.cpp.o -o testConrec ../RDGeneral/librdkitCatch.a ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Built target testConrec make -f Code/Features/CMakeFiles/testBaseFeatures.dir/build.make Code/Features/CMakeFiles/testBaseFeatures.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Features /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Features /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Features/CMakeFiles/testBaseFeatures.dir/DependInfo.cmake "--color=" testBaseFeatures make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Features/CMakeFiles/testBaseFeatures.dir/build.make Code/Features/CMakeFiles/testBaseFeatures.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Building CXX object Code/Features/CMakeFiles/testBaseFeatures.dir/testFeatures.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Features && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/Features/CMakeFiles/testBaseFeatures.dir/testFeatures.cpp.o -MF CMakeFiles/testBaseFeatures.dir/testFeatures.cpp.o.d -o CMakeFiles/testBaseFeatures.dir/testFeatures.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Features/testFeatures.cpp [ 15%] Linking CXX executable testAlignment cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testAlignment.dir/link.d CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Built target testAlignment make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake "--color=" ChemicalFeatures make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures/FreeChemicalFeature.cpp [ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/wrap_Utils.cpp [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o -MF CMakeFiles/GraphMol.dir/ROMol.cpp.o.d -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ROMol.cpp [ 15%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdAlignment.dir/link.d -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Built target rdAlignment [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o -MF CMakeFiles/GraphMol.dir/RWMol.cpp.o.d -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RWMol.cpp /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FindRings.cpp: In function ‘void RDKit::MolOps::findRingFamilies(const RDKit::ROMol&)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FindRings.cpp:1298:36: warning: unused parameter ‘mol’ [-Wunused-parameter] 1298 | void findRingFamilies(const ROMol &mol) { | ~~~~~~~~~~~~~^~~ [ 15%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -MF CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/Wrap/UniformGrid3D.cpp [ 15%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ChemicalFeatures.dir/link.d -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2025.03.6 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2025.03.6 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Built target ChemicalFeatures [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -MF CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o.d -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PeriodicTable.cpp In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/bits/stl_tree.h:65, from /usr/include/c++/15/map:64, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PeriodicTable.h:14, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PeriodicTable.cpp:11: /usr/include/c++/15/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PeriodicTable.cpp:96:57: required from here 96 | adata.d_isotopeInfoMap[isotope] = std::make_pair(mass, abundance); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 1164 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 15%] Linking CXX executable testBaseFeatures cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Features && /usr/bin/cmake -E cmake_link_script CMakeFiles/testBaseFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testBaseFeatures.dir/link.d CMakeFiles/testBaseFeatures.dir/testFeatures.cpp.o -o testBaseFeatures ../RDGeneral/librdkitCatch.a ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Built target testBaseFeatures make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake "--color=" testChemicalFeatures make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -MF CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o.d -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures/testChemicalFeatures.cpp [ 15%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/cDataStructs.dir/link.d -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/RealValueVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 15%] Built target cDataStructs [ 15%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformRealValueGrid3D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformRealValueGrid3D.cpp.o -MF CMakeFiles/rdGeometry.dir/UniformRealValueGrid3D.cpp.o.d -o CMakeFiles/rdGeometry.dir/UniformRealValueGrid3D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/Wrap/UniformRealValueGrid3D.cpp [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o -MF CMakeFiles/GraphMol.dir/atomic_data.cpp.o.d -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/atomic_data.cpp [ 16%] Linking CXX executable testChemicalFeatures cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testChemicalFeatures.dir/link.d CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures ../RDGeneral/librdkitCatch.a ../../lib/libRDKitChemicalFeatures.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 16%] Built target testChemicalFeatures [ 16%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -MF CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o.d -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Geometry/Wrap/rdGeometry.cpp [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o -MF CMakeFiles/GraphMol.dir/QueryOps.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryOps.cpp [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -MF CMakeFiles/GraphMol.dir/MolPickler.cpp.o.d -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolPickler.cpp [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -MF CMakeFiles/GraphMol.dir/Canon.cpp.o.d -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Canon.cpp [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -MF CMakeFiles/GraphMol.dir/AtomIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/AtomIterators.cpp /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolPickler.cpp: In function ‘void RDKit::streamReadPositiveChar(std::istream&, char&, int)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolPickler.cpp:72:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 72 | if (res < 0) { | ~~~~^~~ [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o -MF CMakeFiles/GraphMol.dir/BondIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/BondIterators.cpp [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -MF CMakeFiles/GraphMol.dir/Aromaticity.cpp.o.d -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Aromaticity.cpp [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o -MF CMakeFiles/GraphMol.dir/Kekulize.cpp.o.d -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Kekulize.cpp [ 16%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdGeometry.dir/link.d -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/UniformRealValueGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 16%] Built target rdGeometry [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -MF CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o.d -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ConjugHybrid.cpp [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o -MF CMakeFiles/GraphMol.dir/AddHs.cpp.o.d -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/AddHs.cpp [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o -MF CMakeFiles/GraphMol.dir/Matrices.cpp.o.d -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Matrices.cpp [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o -MF CMakeFiles/GraphMol.dir/Chirality.cpp.o.d -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Chirality.cpp [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o -MF CMakeFiles/GraphMol.dir/RingInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RingInfo.cpp [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o -MF CMakeFiles/GraphMol.dir/Conformer.cpp.o.d -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Conformer.cpp [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o -MF CMakeFiles/GraphMol.dir/Renumber.cpp.o.d -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Renumber.cpp [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -MF CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o.d -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/AdjustQuery.cpp [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o -MF CMakeFiles/GraphMol.dir/Resonance.cpp.o.d -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Resonance.cpp [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -MF CMakeFiles/GraphMol.dir/StereoGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StereoGroup.cpp [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o -MF CMakeFiles/GraphMol.dir/new_canon.cpp.o.d -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/new_canon.cpp [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -MF CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstanceGroup.cpp [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o -MF CMakeFiles/GraphMol.dir/FindStereo.cpp.o.d -o CMakeFiles/GraphMol.dir/FindStereo.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FindStereo.cpp [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -MF CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MonomerInfo.cpp [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -MF CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o.d -o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/NontetrahedralStereo.cpp [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atropisomers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Atropisomers.cpp.o -MF CMakeFiles/GraphMol.dir/Atropisomers.cpp.o.d -o CMakeFiles/GraphMol.dir/Atropisomers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Atropisomers.cpp [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -MF CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o.d -o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/WedgeBonds.cpp [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolProps.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolProps.cpp.o -MF CMakeFiles/GraphMol.dir/MolProps.cpp.o.d -o CMakeFiles/GraphMol.dir/MolProps.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProps.cpp [ 18%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/GraphMol.dir/link.d -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2025.03.6 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o CMakeFiles/GraphMol.dir/FindStereo.cpp.o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o CMakeFiles/GraphMol.dir/Atropisomers.cpp.o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o CMakeFiles/GraphMol.dir/MolProps.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 18%] Built target GraphMol make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/depend make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake "--color=" MolTransforms make -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GenericGroups /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/DependInfo.cmake "--color=" GenericGroups cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake "--color=" SmilesParse make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/tableTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/tableTestsCatch.dir/depend make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/tableTestsCatch.dir/DependInfo.cmake "--color=" tableTestsCatch make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake "--color=" Subgraphs make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Trajectory /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake "--color=" Trajectory make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/DependInfo.cmake "--color=" CIPLabeler make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake "--color=" PartialCharges make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/tableTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/tableTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 19%] Building CXX object Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGenericGroups_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERICGROUPS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -MF CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o.d -o CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GenericGroups/GenericGroups.cpp make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build [ 19%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesParse.cpp [ 19%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o [ 19%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges/GasteigerCharges.cpp [ 19%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o [ 19%] Building CXX object Code/GraphMol/CMakeFiles/tableTestsCatch.dir/catch_periodictable.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/tableTestsCatch.dir/catch_periodictable.cpp.o -MF CMakeFiles/tableTestsCatch.dir/catch_periodictable.cpp.o.d -o CMakeFiles/tableTestsCatch.dir/catch_periodictable.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_periodictable.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -MF CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o.d -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms/MolTransforms.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o -MF CMakeFiles/Trajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Trajectory/Trajectory.cpp [ 19%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -MF CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o.d -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs/Subgraphs.cpp [ 19%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/CIPMol.cpp [ 19%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/CIPLabeler.cpp [ 19%] Linking CXX executable tableTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/tableTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tableTestsCatch.dir/link.d CMakeFiles/tableTestsCatch.dir/catch_periodictable.cpp.o -o tableTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitGraphMol.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 19%] Built target tableTestsCatch make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake "--color=" MolCatalog make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 19%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp [ 20%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges/GasteigerParams.cpp [ 20%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -MF CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o.d -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs/SubgraphUtils.cpp [ 20%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Trajectory.dir/link.d -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2025.03.6 CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 20%] Built target Trajectory make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake "--color=" MolInterchange make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 20%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/External/rapidjson-1.1.0/include -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o -MF CMakeFiles/MolInterchange.dir/Parser.cpp.o.d -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/Parser.cpp [ 20%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesParseOps.cpp [ 20%] Linking CXX shared library ../../../lib/libRDKitGenericGroups.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/GenericGroups.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/GenericGroups.dir/link.d -Wl,-soname,libRDKitGenericGroups.so.1 -o ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1 ../../../lib/libRDKitGenericGroups.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 20%] Built target GenericGroups make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake "--color=" SLNParse make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 20%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o -MF CMakeFiles/SLNParse.dir/SLNParse.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/SLNParse.cpp [ 20%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolTransforms.dir/link.d -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 20%] Built target MolTransforms make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake "--color=" rdqueries make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 20%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o -MF CMakeFiles/rdqueries.dir/rdqueries.cpp.o.d -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdqueries.cpp [ 20%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/PartialCharges.dir/link.d -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 20%] Built target PartialCharges make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake "--color=" rdtrajectory make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 20%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -MF CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/Trajectory.cpp [ 20%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -MF CMakeFiles/CIPLabeler.dir/Mancude.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Mancude.cpp [ 20%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/MolCatalogParams.cpp [ 20%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 [ 21%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolCatalog.dir/link.d -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2025.03.6 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2025.03.6 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 21%] Built target MolCatalog make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake "--color=" rdChemicalFeatures make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 21%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -MF CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o.d -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Subgraphs.dir/link.d -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 21%] Built target Subgraphs make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake "--color=" SubstructMatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 21%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructMatch.cpp [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -MF CMakeFiles/CIPLabeler.dir/Digraph.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Digraph.cpp [ 21%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o -MF CMakeFiles/rdqueries.dir/Queries.cpp.o.d -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/Queries.cpp [ 21%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp [ 21%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -MF CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o.d -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdTrajectory.cpp [ 21%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o -MF CMakeFiles/CIPLabeler.dir/Node.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Node.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Node.cpp [ 21%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesWrite.cpp [ 21%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -MF CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/SLNAttribs.cpp [ 22%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o -MF CMakeFiles/CIPLabeler.dir/Edge.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Edge.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Edge.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdtrajectory.dir/link.d -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 23%] Built target rdtrajectory make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Numerics/Optimizer /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake "--color=" Optimizer make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 23%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -MF CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o.d -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Numerics/Optimizer/BFGSOpt.cpp [ 23%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/External/rapidjson-1.1.0/include -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o -MF CMakeFiles/MolInterchange.dir/Writer.cpp.o.d -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/Writer.cpp [ 23%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructUtils.cpp [ 23%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o -MF CMakeFiles/CIPLabeler.dir/Sort.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Sort.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Sort.cpp [ 23%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdChemicalFeatures.dir/link.d -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libRDKitChemicalFeatures.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 23%] Built target rdChemicalFeatures make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake "--color=" rdPartialCharges make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 24%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -MF CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o.d -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp [ 24%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -MF CMakeFiles/Optimizer.dir/LinearSearch.cpp.o.d -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Numerics/Optimizer/LinearSearch.cpp [ 24%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Configuration.cpp [ 24%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Optimizer.dir/link.d -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2025.03.6 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 24%] Built target Optimizer make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake "--color=" rdMolTransforms make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 24%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -MF CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o.d -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp [ 24%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp [ 24%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdPartialCharges.dir/link.d -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 24%] Built target rdPartialCharges make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake "--color=" ShapeHelpers [ 24%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o -MF CMakeFiles/SLNParse.dir/sln.tab.cpp.o.d -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/sln.tab.cpp make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 24%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp [ 24%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmartsWrite.cpp [ 24%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdqueries.dir/link.d -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 24%] Built target rdqueries make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake "--color=" rdMolCatalog make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 24%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -MF CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o.d -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp [ 24%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp [ 25%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o [ 25%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SubstructMatch.dir/link.d -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 25%] Built target SubstructMatch make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/Numerics/Optimizer /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake "--color=" testOptimizer make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 25%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -MF CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o.d -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/Numerics/Optimizer/testOptimizer.cpp [ 25%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolInterchange.dir/link.d -Wl,-soname,libRDKitMolInterchange.so.1 -o ../../../lib/libRDKitMolInterchange.so.1.2025.03.6 CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.so.1.2025.03.6 ../../../lib/libRDKitMolInterchange.so.1 ../../../lib/libRDKitMolInterchange.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 25%] Built target MolInterchange make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ForceField /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake "--color=" ForceField make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o -MF CMakeFiles/ForceField.dir/ForceField.cpp.o.d -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/ForceField.cpp [ 25%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolTransforms.dir/link.d -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 25%] Built target rdMolTransforms make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake "--color=" rdMolInterchange make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 25%] Building CXX object Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolInterchange_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/External/rapidjson-1.1.0/include -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -MF CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o.d -o CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp [ 25%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/AtropisomerBond.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/AtropisomerBond.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/AtropisomerBond.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/AtropisomerBond.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/AtropisomerBond.cpp [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -MF CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/CXSmilesOps.cpp [ 26%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -MF CMakeFiles/SLNParse.dir/lex.yysln.cpp.o.d -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/lex.yysln.cpp [ 26%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 [ 26%] Linking CXX executable testOptimizer cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ShapeHelpers.dir/link.d -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2025.03.6 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2025.03.6 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 26%] Built target ShapeHelpers [ 26%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testOptimizer.dir/link.d CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitOptimizer.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 26%] Built target testOptimizer make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake "--color=" rdShapeHelpers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 26%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -MF CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o.d -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp [ 26%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp [ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/AngleConstraint.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/AngleConstraint.cpp.o -MF CMakeFiles/ForceField.dir/AngleConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/AngleConstraint.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraint.cpp [ 26%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule2.cpp [ 26%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolCatalog.dir/link.d -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 26%] Built target rdMolCatalog [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o -MF CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o.d -o CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/CanonicalizeStereoGroups.cpp [ 26%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule3.cpp [ 27%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/AngleConstraints.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/AngleConstraints.cpp.o -MF CMakeFiles/ForceField.dir/AngleConstraints.cpp.o.d -o CMakeFiles/ForceField.dir/AngleConstraints.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraints.cpp [ 28%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 [ 28%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SLNParse.dir/link.d -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2025.03.6 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2025.03.6 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolInterchange.dir/link.d -o ../../../../rdkit/Chem/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o ../../../../lib/libRDKitMolInterchange.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 28%] Built target rdMolInterchange make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 28%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesJSONParsers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesJSONParsers.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesJSONParsers.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesJSONParsers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesJSONParsers.cpp [ 28%] Built target SLNParse [ 28%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp [ 28%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp [ 28%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/smarts.tab.cpp [ 28%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule5.cpp [ 28%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/DistanceConstraint.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/DistanceConstraint.cpp.o -MF CMakeFiles/ForceField.dir/DistanceConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/DistanceConstraint.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/DistanceConstraint.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/DistanceConstraints.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/DistanceConstraints.cpp.o -MF CMakeFiles/ForceField.dir/DistanceConstraints.cpp.o.d -o CMakeFiles/ForceField.dir/DistanceConstraints.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/DistanceConstraints.cpp [ 28%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdShapeHelpers.dir/link.d -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 28%] Built target rdShapeHelpers make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake "--color=" rdSLNParse make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 28%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -MF CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o.d -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp [ 28%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule6.cpp [ 28%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/smiles.tab.cpp [ 28%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/SequenceRule.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/PositionConstraint.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/PositionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/PositionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/PositionConstraint.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/PositionConstraint.cpp [ 28%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -MF CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o.d -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/lex.yysmarts.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/TorsionConstraint.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/TorsionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/TorsionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/TorsionConstraint.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/TorsionConstraint.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -MF CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/AngleBend.cpp [ 28%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -MF CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o.d -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/lex.yysmiles.cpp [ 28%] Linking CXX shared library ../../../lib/libRDKitCIPLabeler.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_link_script CMakeFiles/CIPLabeler.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/CIPLabeler.dir/link.d -Wl,-soname,libRDKitCIPLabeler.so.1 -o ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o CMakeFiles/CIPLabeler.dir/Node.cpp.o CMakeFiles/CIPLabeler.dir/Edge.cpp.o CMakeFiles/CIPLabeler.dir/Sort.cpp.o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/CIPLabeler.dir/configs/AtropisomerBond.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1 ../../../lib/libRDKitCIPLabeler.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 28%] Built target CIPLabeler [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/BondStretch.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Nonbonded.cpp [ 28%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdSLNParse.dir/link.d -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libRDKitSLNParse.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 28%] Built target rdSLNParse make -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/DependInfo.cmake "--color=" rdCIPLabeler make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 28%] Building CXX object Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdCIPLabeler_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -MF CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o.d -o CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Wrap/rdCIPLabeler.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Inversion.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversions.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversions.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Inversions.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Inversions.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Inversions.cpp [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -MF CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/TorsionAngle.cpp [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Params.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Params.cpp [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Utils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Utils.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Utils.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Utils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Utils.cpp [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/AngleBend.cpp [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/BondStretch.cpp [ 29%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/StretchBend.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SmilesParse.dir/link.d -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/CanonicalizeStereoGroups.cpp.o CMakeFiles/SmilesParse.dir/SmilesJSONParsers.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Built target SmilesParse [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/OopBend.cpp [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/TorsionAngle.cpp make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake "--color=" MolAlign make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -MF CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o.d -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/AlignMolecules.cpp /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/StretchBend.cpp: In function ‘std::pair ForceFields::MMFF::Utils::calcStbnForceConstants(const ForceFields::MMFF::MMFFStbn*)’: /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/StretchBend.cpp:23:35: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 23 | const MMFFStbn *mmffStbnParams) { | ^ [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/Nonbonded.cpp [ 29%] Linking CXX shared module ../../../../rdkit/Chem/rdCIPLabeler.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdCIPLabeler.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdCIPLabeler.dir/link.d -o ../../../../rdkit/Chem/rdCIPLabeler.so CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Built target rdCIPLabeler make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake "--color=" graphmolcpTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -MF CMakeFiles/graphmolcpTest.dir/cptest.cpp.o.d -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/cptest.cpp [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/Params.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/Params.cpp make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake "--color=" graphmolqueryTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -MF CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o.d -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/querytest.cpp make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake "--color=" graphmolIterTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -MF CMakeFiles/graphmolIterTest.dir/itertest.cpp.o.d -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/itertest.cpp make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake "--color=" graphmolMemTest1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -MF CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o.d -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/memtest1.cpp make -f Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/DependInfo.cmake "--color=" moliteratorTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -MF CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o.d -o CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_moliterators.cpp make -f Code/GraphMol/CMakeFiles/queryTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/queryTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/queryTestsCatch.dir/DependInfo.cmake "--color=" queryTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/queryTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/queryTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -MF CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o.d -o CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_queries.cpp [ 29%] Linking CXX executable graphmolcpTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmolcpTest.dir/link.d CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Built target graphmolcpTest make -f Code/GraphMol/CMakeFiles/molbundleTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/molbundleTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/molbundleTestsCatch.dir/DependInfo.cmake "--color=" molbundleTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/molbundleTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/molbundleTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/CMakeFiles/molbundleTestsCatch.dir/catch_molbundle.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/molbundleTestsCatch.dir/catch_molbundle.cpp.o -MF CMakeFiles/molbundleTestsCatch.dir/catch_molbundle.cpp.o.d -o CMakeFiles/molbundleTestsCatch.dir/catch_molbundle.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_molbundle.cpp [ 29%] Linking CXX executable graphmolMemTest1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmolMemTest1.dir/link.d CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Built target graphmolMemTest1 make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake "--color=" smiTest2 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/test2.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/test2.cpp.o -MF CMakeFiles/smiTest2.dir/test2.cpp.o.d -o CMakeFiles/smiTest2.dir/test2.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/test2.cpp [ 29%] Linking CXX executable graphmolIterTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmolIterTest.dir/link.d CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Built target graphmolIterTest make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake "--color=" FilterCatalog make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o -MF CMakeFiles/FilterCatalog.dir/Filters.cpp.o.d -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/Filters.cpp [ 29%] Linking CXX executable moliteratorTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/moliteratorTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/moliteratorTestsCatch.dir/link.d CMakeFiles/moliteratorTestsCatch.dir/catch_moliterators.cpp.o -o moliteratorTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Built target moliteratorTestsCatch make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake "--color=" Fingerprints make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -MF CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o.d -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Fingerprints.cpp [ 29%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolAlign.dir/link.d -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2025.03.6 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Built target MolAlign make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake "--color=" smaTest1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o -MF CMakeFiles/smaTest1.dir/smatest.cpp.o.d -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/smatest.cpp [ 30%] Linking CXX shared library ../../lib/libRDKitForceField.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ForceField.dir/link.d -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2025.03.6 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/AngleConstraints.cpp.o CMakeFiles/ForceField.dir/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/DistanceConstraints.cpp.o CMakeFiles/ForceField.dir/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/Inversions.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/UFF/Utils.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2025.03.6 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 30%] Built target ForceField make -f Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/DependInfo.cmake "--color=" v2smiTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/v2catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/v2smiTestCatch.dir/v2catch_tests.cpp.o -MF CMakeFiles/v2smiTestCatch.dir/v2catch_tests.cpp.o.d -o CMakeFiles/v2smiTestCatch.dir/v2catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/v2catch_tests.cpp [ 30%] Linking CXX executable queryTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/queryTestsCatch.dir/link.txt --verbose=1 [ 30%] Linking CXX executable smiTest2 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/queryTestsCatch.dir/link.d CMakeFiles/queryTestsCatch.dir/catch_queries.cpp.o -o queryTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 30%] Built target queryTestsCatch make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake "--color=" testSubgraphs1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o -MF CMakeFiles/testSubgraphs1.dir/test1.cpp.o.d -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs/test1.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/smiTest2.dir/link.d CMakeFiles/smiTest2.dir/test2.cpp.o -o smiTest2 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 30%] Built target smiTest2 make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake "--color=" testSubgraphs2 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o -MF CMakeFiles/testSubgraphs2.dir/test2.cpp.o.d -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs/test2.cpp [ 31%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterCatalog.cpp [ 31%] Linking CXX executable molbundleTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molbundleTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molbundleTestsCatch.dir/link.d CMakeFiles/molbundleTestsCatch.dir/catch_molbundle.cpp.o -o molbundleTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 31%] Built target molbundleTestsCatch make -f Code/GraphMol/Subgraphs/CMakeFiles/subgraphsCatch.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/subgraphsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/subgraphsCatch.dir/DependInfo.cmake "--color=" subgraphsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/subgraphsCatch.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/subgraphsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 31%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs/catch_tests.cpp [ 31%] Linking CXX executable graphmolqueryTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmolqueryTest.dir/link.d CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 31%] Built target graphmolqueryTest make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake "--color=" FragCatalog make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 31%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp [ 31%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -MF CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o.d -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/PatternFingerprints.cpp [ 32%] Linking CXX executable v2smiTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/v2smiTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/v2smiTestCatch.dir/link.d CMakeFiles/v2smiTestCatch.dir/v2catch_tests.cpp.o -o v2smiTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 32%] Built target v2smiTestCatch make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake "--color=" testPartialCharges make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 33%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o -MF CMakeFiles/testPartialCharges.dir/test1.cpp.o.d -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges/test1.cpp [ 33%] Linking CXX executable testSubgraphs2 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1 [ 33%] Linking CXX executable testSubgraphs1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSubgraphs2.dir/link.d CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 33%] Built target testSubgraphs2 make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake "--color=" MolChemicalFeatures make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 34%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSubgraphs1.dir/link.d CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 34%] Built target testSubgraphs1 make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake "--color=" ReducedGraphs make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 34%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -MF CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o.d -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp [ 34%] Linking CXX executable subgraphsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/subgraphsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/subgraphsCatch.dir/link.d CMakeFiles/subgraphsCatch.dir/catch_tests.cpp.o -o subgraphsCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 34%] Built target subgraphsCatch make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake "--color=" testSLNParse make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 34%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o -MF CMakeFiles/testSLNParse.dir/test.cpp.o.d -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/test.cpp [ 34%] Linking CXX executable testPartialCharges cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testPartialCharges.dir/link.d CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 34%] Built target testPartialCharges make -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/DependInfo.cmake "--color=" Abbreviations make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 34%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations && /usr/bin/c++ -DAbbreviations_EXPORTS -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o -MF CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o.d -o CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations/Abbreviations.cpp [ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -MF CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o.d -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganFingerprints.cpp [ 34%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatGenerator.cpp [ 34%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp [ 34%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so [ 34%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ReducedGraphs.dir/link.d -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2025.03.6 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2025.03.6 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 34%] Built target ReducedGraphs make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake "--color=" Depictor make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 34%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o -MF CMakeFiles/Depictor.dir/RDDepictor.cpp.o.d -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/RDDepictor.cpp [ 34%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp [ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/AtomPairs.cpp [ 34%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp [ 34%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations && /usr/bin/c++ -DAbbreviations_EXPORTS -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -MF CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o.d -o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations/AbbreviationsUtils.cpp [ 34%] Linking CXX executable smaTest1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/smaTest1.dir/link.d CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 34%] Built target smaTest1 make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/External/CoordGen/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/DependInfo.cmake "--color=" rdCoordGen make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 35%] Building CXX object External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdCoordGen_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -MF CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o.d -o CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -c /build/reproducible-path/rdkit-202503.6/External/CoordGen/Wrap/rdCoordGen.cpp [ 35%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp [ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o -MF CMakeFiles/Fingerprints.dir/MACCS.cpp.o.d -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MACCS.cpp [ 35%] Linking CXX shared library ../../../lib/libRDKitAbbreviations.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations && /usr/bin/cmake -E cmake_link_script CMakeFiles/Abbreviations.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Abbreviations.dir/link.d -Wl,-soname,libRDKitAbbreviations.so.1 -o ../../../lib/libRDKitAbbreviations.so.1.2025.03.6 CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAbbreviations.so.1.2025.03.6 ../../../lib/libRDKitAbbreviations.so.1 ../../../lib/libRDKitAbbreviations.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 35%] Built target Abbreviations make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake "--color=" ForceFieldHelpers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 35%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp [ 35%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatParams.cpp [ 36%] Linking CXX executable testSLNParse cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSLNParse.dir/link.d CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse ../../../lib/libRDKitSLNParse.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 36%] Built target testSLNParse make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake "--color=" testReducedGraphs make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 36%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o -MF CMakeFiles/testReducedGraphs.dir/test1.cpp.o.d -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs/test1.cpp [ 37%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -MF CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o.d -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/EmbeddedFrag.cpp [ 37%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterCatalogRunner.cpp [ 37%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp [ 37%] Linking CXX shared module ../../../rdkit/Chem/rdCoordGen.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdCoordGen.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdCoordGen.dir/link.d -o ../../../rdkit/Chem/rdCoordGen.so CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 37%] Built target rdCoordGen make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake "--color=" rdReducedGraphs make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 37%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -MF CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o.d -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp [ 37%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolChemicalFeatures.dir/link.d -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2025.03.6 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2025.03.6 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 37%] Built target MolChemicalFeatures make -f Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build.make Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/DependInfo.cmake "--color=" rdAbbreviations make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build.make Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 37%] Building CXX object Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAbbreviations_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -MF CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o.d -o CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations/Wrap/rdAbbreviations.cpp [ 38%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o -MF CMakeFiles/Fingerprints.dir/MHFP.cpp.o.d -o CMakeFiles/Fingerprints.dir/MHFP.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MHFP.cpp [ 38%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragFPGenerator.cpp [ 38%] Linking CXX executable testReducedGraphs cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testReducedGraphs.dir/link.d CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs ../../../lib/libRDKitReducedGraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 38%] Built target testReducedGraphs make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake "--color=" rdMolChemicalFeatures make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 38%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp [ 38%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatchers.cpp [ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp [ 38%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdReducedGraphs.dir/link.d -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o ../../../../lib/libRDKitReducedGraphs.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 38%] Built target rdReducedGraphs [ 38%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o -MF CMakeFiles/Depictor.dir/DepictUtils.cpp.o.d -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/DepictUtils.cpp [ 38%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp [ 38%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/FragCatalog.dir/link.d -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2025.03.6 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2025.03.6 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 38%] Built target FragCatalog [ 38%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp [ 38%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp [ 38%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o -MF CMakeFiles/Depictor.dir/Templates.cpp.o.d -o CMakeFiles/Depictor.dir/Templates.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/Templates.cpp [ 38%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -MF CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp [ 38%] Linking CXX shared module ../../../../rdkit/Chem/rdAbbreviations.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAbbreviations.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdAbbreviations.dir/link.d -o ../../../../rdkit/Chem/rdAbbreviations.so CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o ../../../../lib/libRDKitAbbreviations.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 38%] Built target rdAbbreviations [ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp [ 38%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp [ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp [ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp [ 38%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp [ 38%] Linking CXX shared library ../../../lib/libRDKitDepictor.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Depictor.dir/link.d -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2025.03.6 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o CMakeFiles/Depictor.dir/Templates.cpp.o /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 38%] Built target Depictor make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/External/INCHI-API /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake "--color=" RDInchiLib make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 38%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDInchiLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDINCHILIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o -MF CMakeFiles/RDInchiLib.dir/inchi.cpp.o.d -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /build/reproducible-path/rdkit-202503.6/External/INCHI-API/inchi.cpp /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp: In function ‘void RDKit::MMFF::Tools::addStretchBend(const RDKit::ROMol&, RDKit::MMFF::MMFFMolProperties*, ForceFields::ForceField*)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp:373:68: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 373 | MMFF::Utils::calcStbnForceConstants(&mmffStbnParams); | ^ [ 38%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganGenerator.cpp [ 38%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 [ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleContribs.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/FilterCatalog.dir/link.d -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 38%] Built target FilterCatalog make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake "--color=" ChemTransforms make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 39%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -MF CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o.d -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/ChemTransforms.cpp [ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolChemicalFeatures.dir/link.d -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libRDKitMolChemicalFeatures.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 39%] Built target rdMolChemicalFeatures make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake "--color=" rdDepictor make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 39%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DIN_COORDGEN -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -MF CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o.d -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp [ 39%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp [ 39%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -MF CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o.d -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/MolFragmenter.cpp [ 39%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintUtil.cpp [ 39%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ForceFieldHelpers.dir/link.d -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleContribs.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 39%] Built target ForceFieldHelpers make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake "--color=" rdfiltercatalog make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 39%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -MF CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o.d -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp [ 40%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/RDInchiLib.dir/link.d -Wl,-soname,libRDKitRDInchiLib.so.1 -o ../../lib/libRDKitRDInchiLib.so.1.2025.03.6 CMakeFiles/RDInchiLib.dir/inchi.cpp.o /usr/lib/powerpc64le-linux-gnu/libinchi.so ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2025.03.6 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 40%] Built target RDInchiLib make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake "--color=" rdForceFieldHelpers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 40%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -MF CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o.d -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp [ 40%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake "--color=" MolHash make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 40%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o -MF CMakeFiles/MolHash.dir/hashfunctions.cpp.o.d -o CMakeFiles/MolHash.dir/hashfunctions.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/hashfunctions.cpp [ 40%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -MF CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o.d -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp make -f Code/GraphMol/MolInteractionFields/CMakeFiles/MolInteractionFields.dir/build.make Code/GraphMol/MolInteractionFields/CMakeFiles/MolInteractionFields.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields/CMakeFiles/MolInteractionFields.dir/DependInfo.cmake "--color=" MolInteractionFields make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolInteractionFields/CMakeFiles/MolInteractionFields.dir/build.make Code/GraphMol/MolInteractionFields/CMakeFiles/MolInteractionFields.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 40%] Building CXX object Code/GraphMol/MolInteractionFields/CMakeFiles/MolInteractionFields.dir/MIFDescriptors.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolInteractionFields_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERACTIONFIELDS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolInteractionFields/CMakeFiles/MolInteractionFields.dir/MIFDescriptors.cpp.o -MF CMakeFiles/MolInteractionFields.dir/MIFDescriptors.cpp.o.d -o CMakeFiles/MolInteractionFields.dir/MIFDescriptors.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/MIFDescriptors.cpp [ 40%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenterJSONParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenterJSONParser.cpp.o -MF CMakeFiles/ChemTransforms.dir/MolFragmenterJSONParser.cpp.o.d -o CMakeFiles/ChemTransforms.dir/MolFragmenterJSONParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/MolFragmenterJSONParser.cpp [ 40%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 [ 40%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdDepictor.dir/link.d -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 40%] Built target rdDepictor make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/External/INCHI-API/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake "--color=" rdinchi make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 41%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o -MF CMakeFiles/rdinchi.dir/pyInchi.cpp.o.d -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /build/reproducible-path/rdkit-202503.6/External/INCHI-API/Wrap/pyInchi.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Fingerprints.dir/link.d -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2025.03.6 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/MHFP.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 41%] Built target Fingerprints make -f Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/build.make Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ForceField /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/DependInfo.cmake "--color=" ForceFieldsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/build.make Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 41%] Building CXX object Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/ForceField/CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o -MF CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/catch_tests.cpp [ 41%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o -MF CMakeFiles/MolHash.dir/normalize.cpp.o.d -o CMakeFiles/MolHash.dir/normalize.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/normalize.cpp [ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdForceFieldHelpers.dir/link.d -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 41%] Built target rdForceFieldHelpers make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DistGeom /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake "--color=" DistGeometry make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 41%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -MF CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DistGeom/DistGeomUtils.cpp [ 42%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -MF CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o.d -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DistGeom/TriangleSmooth.cpp [ 42%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 [ 43%] Linking CXX executable ForceFieldsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ChemTransforms.dir/link.d -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenterJSONParser.cpp.o ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ForceFieldsCatch.dir/link.d CMakeFiles/ForceFieldsCatch.dir/catch_tests.cpp.o -o ForceFieldsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitForceField.so.1.2025.03.6 ../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Built target ChemTransforms make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ForceField/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake "--color=" rdForceField [ 43%] Built target ForceFieldsCatch make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake "--color=" rdFingerprintGenerator make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o -MF CMakeFiles/rdForceField.dir/ForceField.cpp.o.d -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/Wrap/ForceField.cpp [ 43%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -MF CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o.d -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp [ 43%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o -MF CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DistGeom/DistViolationContribs.cpp [ 43%] Linking CXX shared library ../../../lib/libRDKitMolHash.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 [ 43%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolHash.dir/link.d -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2025.03.6 CMakeFiles/MolHash.dir/hashfunctions.cpp.o CMakeFiles/MolHash.dir/normalize.cpp.o ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2025.03.6 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Built target MolHash make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/DependInfo.cmake "--color=" rdMHFPFingerprint make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdinchi.dir/link.d -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o ../../../lib/libRDKitRDInchiLib.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libinchi.so ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMHFPFingerprint_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -MF CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o.d -o CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp [ 43%] Built target rdinchi make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake "--color=" rdMolHash make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -MF CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o.d -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp [ 43%] Linking CXX shared library ../../../lib/libRDKitMolInteractionFields.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolInteractionFields.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolInteractionFields.dir/link.d -Wl,-soname,libRDKitMolInteractionFields.so.1 -o ../../../lib/libRDKitMolInteractionFields.so.1.2025.03.6 CMakeFiles/MolInteractionFields.dir/MIFDescriptors.cpp.o ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInteractionFields.so.1.2025.03.6 ../../../lib/libRDKitMolInteractionFields.so.1 ../../../lib/libRDKitMolInteractionFields.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Built target MolInteractionFields make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake "--color=" FileParsers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -MF CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o.d -o CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/CDXMLParser.cpp [ 43%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o -MF CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o.d -o CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DistGeom/ChiralViolationContribs.cpp [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -MF CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/Mol2FileParser.cpp [ 43%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/DistGeometry.dir/link.d -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2025.03.6 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContribs.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContribs.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../lib/libRDKitForceField.so.1.2025.03.6 ../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Built target DistGeometry make -f Code/GraphMol/MolInteractionFields/Wrap/CMakeFiles/rdMIF.dir/build.make Code/GraphMol/MolInteractionFields/Wrap/CMakeFiles/rdMIF.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields/Wrap/CMakeFiles/rdMIF.dir/DependInfo.cmake "--color=" rdMIF make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolInteractionFields/Wrap/CMakeFiles/rdMIF.dir/build.make Code/GraphMol/MolInteractionFields/Wrap/CMakeFiles/rdMIF.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Building CXX object Code/GraphMol/MolInteractionFields/Wrap/CMakeFiles/rdMIF.dir/rdMIF.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMIF_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolInteractionFields/Wrap/CMakeFiles/rdMIF.dir/rdMIF.cpp.o -MF CMakeFiles/rdMIF.dir/rdMIF.cpp.o.d -o CMakeFiles/rdMIF.dir/rdMIF.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/Wrap/rdMIF.cpp [ 43%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolHash.dir/link.d -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libRDKitMolHash.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Built target rdMolHash make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake "--color=" DistGeomHelpers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp In file included from /usr/include/c++/15/string:56, from /usr/include/boost/assert/source_location.hpp:15, from /usr/include/boost/exception/exception.hpp:9, from /usr/include/boost/throw_exception.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:16, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp:11: In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:34, inlined from ‘ValueT boost::python::stl_input_iterator::dereference() const [with ValueT = std::__cxx11::basic_string]’ at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from ‘static typename Facade::reference boost::iterators::iterator_core_access::dereference(const Facade&) [with Facade = boost::python::stl_input_iterator >]’ at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from ‘boost::iterators::detail::iterator_facade_base::reference boost::iterators::detail::iterator_facade_base::operator*() const [with Derived = boost::python::stl_input_iterator >; Value = std::__cxx11::basic_string; CategoryOrTraversal = std::input_iterator_tag; Reference = std::__cxx11::basic_string; Difference = long int]’ at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from ‘constexpr void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::python::stl_input_iterator >; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ at /usr/include/c++/15/bits/stl_vector.h:1957:21, inlined from ‘constexpr std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::python::stl_input_iterator >; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ at /usr/include/c++/15/bits/stl_vector.h:751:23, inlined from ‘std::vector RDKit::MHFPWrapper::ListToVector(const boost::python::api::object&) [with T = std::__cxx11::basic_string]’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp:28:56: /usr/include/c++/15/bits/basic_string.h:239:28: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p’ may be used uninitialized [-Wmaybe-uninitialized] 239 | { return _M_dataplus._M_p; } | ^~~~ In file included from /usr/include/boost/python.hpp:66: /usr/include/boost/python/stl_iterator.hpp: In function ‘std::vector RDKit::MHFPWrapper::ListToVector(const boost::python::api::object&) [with T = std::__cxx11::basic_string]’: /usr/include/boost/python/stl_iterator.hpp:48:16: note: ‘’ declared here 48 | return extract(this->impl_.current().get())(); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1176:20, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:20, inlined from ‘ValueT boost::python::stl_input_iterator::dereference() const [with ValueT = std::__cxx11::basic_string]’ at /usr/include/boost/python/stl_iterator.hpp:48:61, inlined from ‘static typename Facade::reference boost::iterators::iterator_core_access::dereference(const Facade&) [with Facade = boost::python::stl_input_iterator >]’ at /usr/include/boost/iterator/iterator_facade.hpp:631:32, inlined from ‘boost::iterators::detail::iterator_facade_base::reference boost::iterators::detail::iterator_facade_base::operator*() const [with Derived = boost::python::stl_input_iterator >; Value = std::__cxx11::basic_string; CategoryOrTraversal = std::input_iterator_tag; Reference = std::__cxx11::basic_string; Difference = long int]’ at /usr/include/boost/iterator/iterator_facade.hpp:737:69, inlined from ‘constexpr void std::vector<_Tp, _Alloc>::_M_range_initialize(_InputIterator, _InputIterator, std::input_iterator_tag) [with _InputIterator = boost::python::stl_input_iterator >; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ at /usr/include/c++/15/bits/stl_vector.h:1957:21, inlined from ‘constexpr std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = boost::python::stl_input_iterator >; = void; _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]’ at /usr/include/c++/15/bits/stl_vector.h:751:23, inlined from ‘std::vector RDKit::MHFPWrapper::ListToVector(const boost::python::api::object&) [with T = std::__cxx11::basic_string]’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp:28:56: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_string_length’ may be used uninitialized [-Wmaybe-uninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /usr/include/boost/python/stl_iterator.hpp: In function ‘std::vector RDKit::MHFPWrapper::ListToVector(const boost::python::api::object&) [with T = std::__cxx11::basic_string]’: /usr/include/boost/python/stl_iterator.hpp:48:16: note: ‘’ declared here 48 | return extract(this->impl_.current().get())(); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdForceField.dir/link.d -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Built target rdForceField make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DistGeom /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake "--color=" testDistGeom make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -MF CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o.d -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DistGeom/testDistGeom.cpp [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolFileParser.cpp [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SCSRMolFileParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SCSRMolFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/SCSRMolFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/SCSRMolFileParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SCSRMolFileParser.cpp [ 43%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/Embedder.cpp [ 43%] Linking CXX shared module ../../../../rdkit/Chem/rdMHFPFingerprint.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMHFPFingerprint.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMHFPFingerprint.dir/link.d -o ../../../../rdkit/Chem/rdMHFPFingerprint.so CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Built target rdMHFPFingerprint make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/DistGeom/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake "--color=" DistGeom make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o -MF CMakeFiles/DistGeom.dir/DistGeom.cpp.o.d -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/DistGeom/Wrap/DistGeom.cpp [ 43%] Linking CXX executable testDistGeom cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testDistGeom.dir/link.d CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom ../RDGeneral/librdkitCatch.a ../../lib/libRDKitDistGeometry.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../lib/libRDKitForceField.so.1.2025.03.6 ../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 43%] Built target testDistGeom [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -MF CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSGroupParsing.cpp [ 44%] Linking CXX shared module ../../../../rdkit/Chem/rdMIF.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMIF.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMIF.dir/link.d -o ../../../../rdkit/Chem/rdMIF.so CMakeFiles/rdMIF.dir/rdMIF.cpp.o ../../../../lib/libRDKitMolInteractionFields.so.1.2025.03.6 ../../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 44%] Built target rdMIF [ 44%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/EmbedderUtils.cpp [ 44%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdFingerprintGenerator.dir/link.d -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 44%] Built target rdFingerprintGenerator [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -MF CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSGroupWriting.cpp [ 44%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdfiltercatalog.dir/link.d -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 44%] Built target rdfiltercatalog [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolFileStereochem.cpp [ 44%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/DistGeom.dir/link.d -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 44%] Built target DistGeom [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolFileWriter.cpp [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp [ 44%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/DistGeomHelpers.dir/link.d -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 44%] Built target DistGeomHelpers [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SDMolSupplier.cpp [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o -MF CMakeFiles/FileParsers.dir/SDWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SDWriter.cpp [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -MF CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SmilesWriter.cpp [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/TDTMolSupplier.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -MF CMakeFiles/FileParsers.dir/TDTWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/TDTWriter.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/TplFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/TplFileParser.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/TplFileWriter.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o -MF CMakeFiles/FileParsers.dir/PDBParser.cpp.o.d -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/PDBParser.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -MF CMakeFiles/FileParsers.dir/PDBWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/PDBWriter.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o -MF CMakeFiles/FileParsers.dir/CMLWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/CMLWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/CMLWriter.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/XYZFileWriter.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/XYZFileParser.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MaeMolSupplier.cpp [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeWriter.cpp.o -MF CMakeFiles/FileParsers.dir/MaeWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/MaeWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MaeWriter.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -MF CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o.d -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/ProximityBonds.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -MF CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o.d -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SequenceParsers.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -MF CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o.d -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SequenceWriters.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o -MF CMakeFiles/FileParsers.dir/SVGParser.cpp.o.d -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SVGParser.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o -MF CMakeFiles/FileParsers.dir/PNGParser.cpp.o.d -o CMakeFiles/FileParsers.dir/PNGParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/PNGParser.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MultithreadedMolSupplier.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MultithreadedSDMolSupplier.cpp [ 46%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/FileParsers.dir/link.d -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2025.03.6 CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/SCSRMolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/CMLWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeWriter.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o CMakeFiles/FileParsers.dir/PNGParser.cpp.o CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 46%] Built target FileParsers make -f External/CoordGen/CMakeFiles/testCoordGen.dir/build.make External/CoordGen/CMakeFiles/testCoordGen.dir/depend make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/External/CoordGen /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen/CMakeFiles/testCoordGen.dir/DependInfo.cmake "--color=" testCoordGen make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/UFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake "--color=" testUFFForceField make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake "--color=" graphmolTest1 make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/MMFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake "--color=" testMMFFForceField make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake "--color=" graphmolMolOpsTest make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake "--color=" graphmoltestChirality make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake "--color=" graphmoltestPicklerGlobalSetting make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake "--color=" graphmoltestPickler make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f External/CoordGen/CMakeFiles/testCoordGen.dir/build.make External/CoordGen/CMakeFiles/testCoordGen.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build [ 47%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o -MF CMakeFiles/graphmolTest1.dir/test1.cpp.o.d -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/test1.cpp make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 47%] Building CXX object External/CoordGen/CMakeFiles/testCoordGen.dir/test.cpp.o make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build [ 47%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/UFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -MF CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o.d -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/testUFFForceField.cpp [ 47%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -MF CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o.d -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/molopstest.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT External/CoordGen/CMakeFiles/testCoordGen.dir/test.cpp.o -MF CMakeFiles/testCoordGen.dir/test.cpp.o.d -o CMakeFiles/testCoordGen.dir/test.cpp.o -c /build/reproducible-path/rdkit-202503.6/External/CoordGen/test.cpp make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 47%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/MMFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -MF CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o.d -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/testMMFFForceField.cpp [ 48%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -MF CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o.d -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/testPickler.cpp [ 48%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o [ 48%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -MF CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o.d -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/testChirality.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -MF CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o.d -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/testPicklerGlobalSettings.cpp [ 48%] Linking CXX executable testUFFForceField cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1 [ 48%] Linking CXX executable graphmoltestPicklerGlobalSetting cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testUFFForceField.dir/link.d CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 48%] Built target testUFFForceField make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake "--color=" hanoiTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 48%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -MF CMakeFiles/hanoiTest.dir/hanoitest.cpp.o.d -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/hanoitest.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.d CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 48%] Built target graphmoltestPicklerGlobalSetting make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake "--color=" resMolSupplierTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 48%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -MF CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o.d -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/resMolSupplierTest.cpp [ 49%] Linking CXX executable testCoordGen cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCoordGen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testCoordGen.dir/link.d CMakeFiles/testCoordGen.dir/test.cpp.o -o testCoordGen /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target testCoordGen make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake "--color=" molBundleTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -MF CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o.d -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/testMolBundle.cpp [ 49%] Linking CXX executable resMolSupplierTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/resMolSupplierTest.dir/link.d CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target resMolSupplierTest make -f Code/GraphMol/CMakeFiles/testSGroup.dir/build.make Code/GraphMol/CMakeFiles/testSGroup.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/testSGroup.dir/DependInfo.cmake "--color=" testSGroup make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/testSGroup.dir/build.make Code/GraphMol/CMakeFiles/testSGroup.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/testSGroup.dir/testSGroup.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/testSGroup.dir/testSGroup.cpp.o -MF CMakeFiles/testSGroup.dir/testSGroup.cpp.o.d -o CMakeFiles/testSGroup.dir/testSGroup.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/testSGroup.cpp [ 49%] Linking CXX executable molBundleTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 [ 49%] Linking CXX executable testMMFFForceField cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molBundleTest.dir/link.d CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target molBundleTest make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake "--color=" test-valgrind make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -MF CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o.d -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/test-valgrind.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMMFFForceField.dir/link.d CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target testMMFFForceField make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake "--color=" graphmolTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o -MF CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o.d -o CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_graphmol.cpp [ 49%] Linking CXX executable hanoiTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/hanoiTest.dir/link.d CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target hanoiTest make -f Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/DependInfo.cmake "--color=" graphmolOrganometallicsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -MF CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o.d -o CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_organometallics.cpp [ 49%] Linking CXX executable graphmoltestPickler cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 [ 49%] Linking CXX executable graphmolTest1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmoltestPickler.dir/link.d CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target graphmoltestPickler make -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/DependInfo.cmake "--color=" graphmolSGroupCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmolTest1.dir/link.d CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../lib/libRDKitForceField.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -MF CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o.d -o CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_sgroups.cpp [ 49%] Built target graphmolTest1 make -f Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/DependInfo.cmake "--color=" graphmolAdjustQueryCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -MF CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o.d -o CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_adjustquery.cpp [ 49%] Linking CXX executable test-valgrind cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-valgrind.dir/link.d "CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o" -o test-valgrind ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target test-valgrind make -f Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/DependInfo.cmake "--color=" chiralityTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o -MF CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o.d -o CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_chirality.cpp [ 49%] Linking CXX executable graphmolOrganometallicsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolOrganometallicsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmolOrganometallicsCatch.dir/link.d CMakeFiles/graphmolOrganometallicsCatch.dir/catch_organometallics.cpp.o -o graphmolOrganometallicsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target graphmolOrganometallicsCatch make -f Code/GraphMol/CMakeFiles/canonTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/canonTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/canonTestsCatch.dir/DependInfo.cmake "--color=" canonTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/canonTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/canonTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/canonTestsCatch.dir/catch_canon.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/canonTestsCatch.dir/catch_canon.cpp.o -MF CMakeFiles/canonTestsCatch.dir/catch_canon.cpp.o.d -o CMakeFiles/canonTestsCatch.dir/catch_canon.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_canon.cpp [ 49%] Linking CXX executable graphmoltestChirality cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmoltestChirality.dir/link.d CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality ../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target graphmoltestChirality make -f Code/GraphMol/CMakeFiles/pickleTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/pickleTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/pickleTestsCatch.dir/DependInfo.cmake "--color=" pickleTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/pickleTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/pickleTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/pickleTestsCatch.dir/catch_pickles.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/pickleTestsCatch.dir/catch_pickles.cpp.o -MF CMakeFiles/pickleTestsCatch.dir/catch_pickles.cpp.o.d -o CMakeFiles/pickleTestsCatch.dir/catch_pickles.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_pickles.cpp [ 49%] Linking CXX executable graphmolSGroupCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolSGroupCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmolSGroupCatch.dir/link.d CMakeFiles/graphmolSGroupCatch.dir/catch_sgroups.cpp.o -o graphmolSGroupCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target graphmolSGroupCatch make -f Code/GraphMol/CMakeFiles/molopsTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/molopsTestsCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CMakeFiles/molopsTestsCatch.dir/DependInfo.cmake "--color=" molopsTestsCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CMakeFiles/molopsTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/molopsTestsCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o -MF CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o.d -o CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/catch_molops.cpp [ 49%] Linking CXX executable testSGroup cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSGroup.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSGroup.dir/link.d CMakeFiles/testSGroup.dir/testSGroup.cpp.o -o testSGroup ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Built target testSGroup make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake "--color=" smiTest1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o -MF CMakeFiles/smiTest1.dir/test.cpp.o.d -o CMakeFiles/smiTest1.dir/test.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/test.cpp [ 50%] Linking CXX executable graphmolAdjustQueryCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolAdjustQueryCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmolAdjustQueryCatch.dir/link.d CMakeFiles/graphmolAdjustQueryCatch.dir/catch_adjustquery.cpp.o -o graphmolAdjustQueryCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 50%] Built target graphmolAdjustQueryCatch make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake "--color=" ChemReactions make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 50%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o -MF CMakeFiles/ChemReactions.dir/Reaction.cpp.o.d -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Reaction.cpp [ 50%] Linking CXX executable canonTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/canonTestsCatch.dir/link.txt --verbose=1 [ 50%] Linking CXX executable molopsTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molopsTestsCatch.dir/link.txt --verbose=1 [ 50%] Linking CXX executable pickleTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/pickleTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/canonTestsCatch.dir/link.d CMakeFiles/canonTestsCatch.dir/catch_canon.cpp.o -o canonTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 50%] Built target canonTestsCatch make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake "--color=" smiTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 50%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/catch_tests.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pickleTestsCatch.dir/link.d CMakeFiles/pickleTestsCatch.dir/catch_pickles.cpp.o -o pickleTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molopsTestsCatch.dir/link.d CMakeFiles/molopsTestsCatch.dir/catch_molops.cpp.o -o molopsTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 50%] Built target pickleTestsCatch [ 50%] Built target molopsTestsCatch make -f Code/GraphMol/SmilesParse/CMakeFiles/nontetrahedralCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/nontetrahedralCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/nontetrahedralCatch.dir/DependInfo.cmake "--color=" nontetrahedralCatch [ 50%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -MF CMakeFiles/ChemReactions.dir/MDLParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/MDLParser.cpp make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/nontetrahedralCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/nontetrahedralCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 50%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/nontetrahedralCatch.dir/nontetrahedral_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/nontetrahedralCatch.dir/nontetrahedral_tests.cpp.o -MF CMakeFiles/nontetrahedralCatch.dir/nontetrahedral_tests.cpp.o.d -o CMakeFiles/nontetrahedralCatch.dir/nontetrahedral_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/nontetrahedral_tests.cpp [ 50%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -MF CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/DaylightParser.cpp [ 50%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionPickler.cpp [ 50%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionWriter.cpp [ 50%] Linking CXX executable nontetrahedralCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/nontetrahedralCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/nontetrahedralCatch.dir/link.d CMakeFiles/nontetrahedralCatch.dir/nontetrahedral_tests.cpp.o -o nontetrahedralCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 50%] Built target nontetrahedralCatch make -f Code/GraphMol/SmilesParse/CMakeFiles/smartsTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smartsTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smartsTestCatch.dir/DependInfo.cmake "--color=" smartsTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smartsTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smartsTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 50%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smartsTestCatch.dir/smarts_catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/smartsTestCatch.dir/smarts_catch_tests.cpp.o -MF CMakeFiles/smartsTestCatch.dir/smarts_catch_tests.cpp.o.d -o CMakeFiles/smartsTestCatch.dir/smarts_catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/smarts_catch_tests.cpp [ 51%] Linking CXX executable smartsTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartsTestCatch.dir/link.txt --verbose=1 [ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionDepict.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/smartsTestCatch.dir/link.d CMakeFiles/smartsTestCatch.dir/smarts_catch_tests.cpp.o -o smartsTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 51%] Built target smartsTestCatch make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake "--color=" testDepictor make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 51%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DIN_COORDGEN -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o -MF CMakeFiles/testDepictor.dir/testDepictor.cpp.o.d -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/testDepictor.cpp [ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp [ 51%] Linking CXX executable graphmolTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmolTestsCatch.dir/link.d CMakeFiles/graphmolTestsCatch.dir/catch_graphmol.cpp.o -o graphmolTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 51%] Built target graphmolTestsCatch make -f Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/build.make Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/DependInfo.cmake "--color=" depictorCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/build.make Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 51%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DIN_COORDGEN -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Depictor/CMakeFiles/depictorCatch.dir/catch_tests.cpp.o -MF CMakeFiles/depictorCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/depictorCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/catch_tests.cpp [ 51%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionUtils.cpp [ 52%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -MF CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/MoleculeParser.cpp [ 52%] Linking CXX executable chiralityTestsCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/chiralityTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/chiralityTestsCatch.dir/link.d CMakeFiles/chiralityTestsCatch.dir/catch_chirality.cpp.o -o chiralityTestsCatch ../RDGeneral/librdkitCatch.a ../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Built target chiralityTestsCatch make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake "--color=" fileParsersTest1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o -MF CMakeFiles/fileParsersTest1.dir/test1.cpp.o.d -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/test1.cpp [ 52%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionRunner.cpp [ 52%] Linking CXX executable smiTest1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/smiTest1.dir/link.d CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Built target smiTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/DependInfo.cmake "--color=" testAtropisomers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o -MF CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o.d -o CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testAtropisomers.cpp [ 52%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -MF CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o.d -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/PreprocessRxn.cpp [ 52%] Linking CXX executable testDepictor cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1 [ 52%] Linking CXX executable graphmolMolOpsTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testDepictor.dir/link.d CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Built target testDepictor make -f Code/GraphMol/FileParsers/CMakeFiles/testSquiggleDoubleBonds.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSquiggleDoubleBonds.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSquiggleDoubleBonds.dir/DependInfo.cmake "--color=" testSquiggleDoubleBonds make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testSquiggleDoubleBonds.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSquiggleDoubleBonds.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSquiggleDoubleBonds.dir/testSquiggleDoubleBonds.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testSquiggleDoubleBonds.dir/testSquiggleDoubleBonds.cpp.o -MF CMakeFiles/testSquiggleDoubleBonds.dir/testSquiggleDoubleBonds.cpp.o.d -o CMakeFiles/testSquiggleDoubleBonds.dir/testSquiggleDoubleBonds.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testSquiggleDoubleBonds.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/graphmolMolOpsTest.dir/link.d CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest ../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../lib/libRDKitAlignment.so.1.2025.03.6 ../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Built target graphmolMolOpsTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake "--color=" testMolSupplier make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -MF CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o.d -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testMolSupplier.cpp [ 52%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -MF CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o.d -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/SanitizeRxn.cpp [ 52%] Linking CXX executable smiTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/smiTestCatch.dir/link.d CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -o smiTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Built target smiTestCatch make -f Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/DependInfo.cmake "--color=" testGeneralFileReader make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -MF CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o.d -o CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testGeneralFileReader.cpp [ 52%] Linking CXX executable testAtropisomers cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAtropisomers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testAtropisomers.dir/link.d CMakeFiles/testAtropisomers.dir/testAtropisomers.cpp.o -o testAtropisomers ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Built target testAtropisomers make -f Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/DependInfo.cmake "--color=" testMultithreadedMolSupplier make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -MF CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o.d -o CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testMultithreadedMolSupplier.cpp [ 53%] Linking CXX executable testSquiggleDoubleBonds cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSquiggleDoubleBonds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSquiggleDoubleBonds.dir/link.d CMakeFiles/testSquiggleDoubleBonds.dir/testSquiggleDoubleBonds.cpp.o -o testSquiggleDoubleBonds ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 53%] Built target testSquiggleDoubleBonds make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake "--color=" testMolWriter make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -MF CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o.d -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testMolWriter.cpp [ 53%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o -MF CMakeFiles/ChemReactions.dir/PNGParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/PNGParser.cpp [ 53%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o -MF CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/CDXMLParser.cpp [ 54%] Linking CXX executable testGeneralFileReader cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGeneralFileReader.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testGeneralFileReader.dir/link.d CMakeFiles/testGeneralFileReader.dir/testGeneralFileReader.cpp.o -o testGeneralFileReader ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitRDStreams.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Built target testGeneralFileReader make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake "--color=" testTplParser make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o -MF CMakeFiles/testTplParser.dir/testTpls.cpp.o.d -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testTpls.cpp [ 54%] Linking CXX executable testMultithreadedMolSupplier cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultithreadedMolSupplier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMultithreadedMolSupplier.dir/link.d CMakeFiles/testMultithreadedMolSupplier.dir/testMultithreadedMolSupplier.cpp.o -o testMultithreadedMolSupplier ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitRDStreams.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Built target testMultithreadedMolSupplier make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake "--color=" testMol2ToMol make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -MF CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o.d -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testMol2ToMol.cpp [ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -fpermissive -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp [ 54%] Linking CXX executable depictorCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/depictorCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/depictorCatch.dir/link.d CMakeFiles/depictorCatch.dir/catch_tests.cpp.o -o depictorCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Built target depictorCatch make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake "--color=" testSequence make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o -MF CMakeFiles/testSequence.dir/testSequence.cpp.o.d -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testSequence.cpp make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake "--color=" testExtendedStereoParsing make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -MF CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o.d -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp [ 54%] Linking CXX executable testSequence cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSequence.dir/link.d CMakeFiles/testSequence.dir/testSequence.cpp.o -o testSequence ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Built target testSequence make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake "--color=" fileParsersCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o -MF CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o.d -o CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/file_parsers_catch.cpp [ 54%] Linking CXX executable testMol2ToMol cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMol2ToMol.dir/link.d CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Built target testMol2ToMol make -f Code/GraphMol/FileParsers/CMakeFiles/macromolsCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/macromolsCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/macromolsCatchTest.dir/DependInfo.cmake "--color=" macromolsCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/macromolsCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/macromolsCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/macromolsCatchTest.dir/macromols_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/macromolsCatchTest.dir/macromols_catch.cpp.o -MF CMakeFiles/macromolsCatchTest.dir/macromols_catch.cpp.o.d -o CMakeFiles/macromolsCatchTest.dir/macromols_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/macromols_catch.cpp [ 54%] Linking CXX executable testExtendedStereoParsing cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testExtendedStereoParsing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testExtendedStereoParsing.dir/link.d CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -o testExtendedStereoParsing ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Built target testExtendedStereoParsing [ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp [ 54%] Linking CXX executable testTplParser cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testTplParser.dir/link.d CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Built target testTplParser make -f Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/DependInfo.cmake "--color=" testPropertyLists [ 54%] Linking CXX executable testMolSupplier cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -MF CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o.d -o CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/testPropertyLists.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMolSupplier.dir/link.d CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitRDStreams.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Built target testMolSupplier make -f Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/DependInfo.cmake "--color=" XYZFileParserCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o -MF CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o.d -o CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/XYZFileParserCatchTest.cpp [ 54%] Linking CXX executable testMolWriter cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMolWriter.dir/link.d CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Built target testMolWriter make -f Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/DependInfo.cmake "--color=" cdxmlParserCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o -MF CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o.d -o CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/cdxml_parser_catch.cpp [ 54%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp make -f Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/DependInfo.cmake "--color=" molfileStereoCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o -MF CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o.d -o CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/molfile_stereo_catch.cpp [ 55%] Linking CXX executable macromolsCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/macromolsCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/macromolsCatchTest.dir/link.d CMakeFiles/macromolsCatchTest.dir/macromols_catch.cpp.o -o macromolsCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target macromolsCatchTest make -f Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/DependInfo.cmake "--color=" connectTheDotsTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Linking CXX executable XYZFileParserCatchTest [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/connectTheDots_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/connectTheDotsTest.dir/connectTheDots_catch.cpp.o -MF CMakeFiles/connectTheDotsTest.dir/connectTheDots_catch.cpp.o.d -o CMakeFiles/connectTheDotsTest.dir/connectTheDots_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/connectTheDots_catch.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/XYZFileParserCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/XYZFileParserCatchTest.dir/link.d CMakeFiles/XYZFileParserCatchTest.dir/XYZFileParserCatchTest.cpp.o -o XYZFileParserCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target XYZFileParserCatchTest make -f Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/DependInfo.cmake "--color=" v2MolSuppliers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/v2_suppliers_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/v2MolSuppliers.dir/v2_suppliers_catch.cpp.o -MF CMakeFiles/v2MolSuppliers.dir/v2_suppliers_catch.cpp.o.d -o CMakeFiles/v2MolSuppliers.dir/v2_suppliers_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/v2_suppliers_catch.cpp [ 55%] Linking CXX executable cdxmlParserCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlParserCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/cdxmlParserCatchTest.dir/link.d CMakeFiles/cdxmlParserCatchTest.dir/cdxml_parser_catch.cpp.o -o cdxmlParserCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target cdxmlParserCatchTest make -f Code/GraphMol/FileParsers/CMakeFiles/v2FileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/v2FileParsersCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/v2FileParsersCatchTest.dir/DependInfo.cmake "--color=" v2FileParsersCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/v2FileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/v2FileParsersCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/v2FileParsersCatchTest.dir/v2_file_parsers_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/v2FileParsersCatchTest.dir/v2_file_parsers_catch.cpp.o -MF CMakeFiles/v2FileParsersCatchTest.dir/v2_file_parsers_catch.cpp.o.d -o CMakeFiles/v2FileParsersCatchTest.dir/v2_file_parsers_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/v2_file_parsers_catch.cpp [ 55%] Linking CXX executable connectTheDotsTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/connectTheDotsTest.dir/link.txt --verbose=1 [ 55%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 [ 55%] Linking CXX executable testPropertyLists cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPropertyLists.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/connectTheDotsTest.dir/link.d CMakeFiles/connectTheDotsTest.dir/connectTheDots_catch.cpp.o -o connectTheDotsTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target connectTheDotsTest make -f Code/GraphMol/FileParsers/CMakeFiles/atropisomersCatch.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/atropisomersCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/atropisomersCatch.dir/DependInfo.cmake "--color=" atropisomersCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/atropisomersCatch.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/atropisomersCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/atropisomersCatch.dir/atropisomers_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/atropisomersCatch.dir/atropisomers_catch.cpp.o -MF CMakeFiles/atropisomersCatch.dir/atropisomers_catch.cpp.o.d -o CMakeFiles/atropisomersCatch.dir/atropisomers_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/atropisomers_catch.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testPropertyLists.dir/link.d CMakeFiles/testPropertyLists.dir/testPropertyLists.cpp.o -o testPropertyLists ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target testPropertyLists make -f Code/GraphMol/FileParsers/CMakeFiles/multithreadedSupplierCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/multithreadedSupplierCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/multithreadedSupplierCatchTest.dir/DependInfo.cmake "--color=" multithreadedSupplierCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/multithreadedSupplierCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/multithreadedSupplierCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FileParsers/CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o -MF CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o.d -o CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/multithreaded_supplier_catch.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ChemReactions.dir/link.d -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2025.03.6 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target ChemReactions make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake "--color=" testSubstructMatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o -MF CMakeFiles/testSubstructMatch.dir/test1.cpp.o.d -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/test1.cpp [ 55%] Linking CXX executable molfileStereoCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/molfileStereoCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molfileStereoCatchTest.dir/link.d CMakeFiles/molfileStereoCatchTest.dir/molfile_stereo_catch.cpp.o -o molfileStereoCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target molfileStereoCatchTest make -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/DependInfo.cmake "--color=" substructTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Substruct/CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/catch_tests.cpp [ 55%] Linking CXX executable v2MolSuppliers cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/v2MolSuppliers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/v2MolSuppliers.dir/link.d CMakeFiles/v2MolSuppliers.dir/v2_suppliers_catch.cpp.o -o v2MolSuppliers ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target v2MolSuppliers make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake "--color=" testReaction make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o -MF CMakeFiles/testReaction.dir/testReaction.cpp.o.d -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/testReaction.cpp [ 55%] Linking CXX executable v2FileParsersCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/v2FileParsersCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/v2FileParsersCatchTest.dir/link.d CMakeFiles/v2FileParsersCatchTest.dir/v2_file_parsers_catch.cpp.o -o v2FileParsersCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target v2FileParsersCatchTest make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake "--color=" testReactionFingerprints make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -MF CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o.d -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp [ 55%] Linking CXX executable atropisomersCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/atropisomersCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/atropisomersCatch.dir/link.d CMakeFiles/atropisomersCatch.dir/atropisomers_catch.cpp.o -o atropisomersCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target atropisomersCatch make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake "--color=" testEnumeration make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -MF CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o.d -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp [ 55%] Linking CXX executable multithreadedSupplierCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/multithreadedSupplierCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/multithreadedSupplierCatchTest.dir/link.d CMakeFiles/multithreadedSupplierCatchTest.dir/multithreaded_supplier_catch.cpp.o -o multithreadedSupplierCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target multithreadedSupplierCatchTest make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake "--color=" rxnTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/catch_tests.cpp [ 55%] Linking CXX executable fileParsersTest1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fileParsersTest1.dir/link.d CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target fileParsersTest1 make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake "--color=" testChemTransforms make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -MF CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o.d -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/testChemTransforms.cpp [ 55%] Linking CXX executable testReactionFingerprints cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testReactionFingerprints.dir/link.d CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target testReactionFingerprints make -f Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/DependInfo.cmake "--color=" chemTransformsTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/catch_tests.cpp [ 55%] Linking CXX executable testSubstructMatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSubstructMatch.dir/link.d CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target testSubstructMatch make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake "--color=" MolStandardize make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Pipeline.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Pipeline.cpp.o -MF CMakeFiles/MolStandardize.dir/Pipeline.cpp.o.d -o CMakeFiles/MolStandardize.dir/Pipeline.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Pipeline.cpp [ 55%] Linking CXX executable testEnumeration cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testEnumeration.dir/link.d CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -o testEnumeration ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target testEnumeration make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake "--color=" filterCatalogTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -MF CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o.d -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp [ 55%] Linking CXX executable substructTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/substructTestCatch.dir/link.d CMakeFiles/substructTestCatch.dir/catch_tests.cpp.o -o substructTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target substructTestCatch make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake "--color=" testFragCatalog make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o -MF CMakeFiles/testFragCatalog.dir/test1.cpp.o.d -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/test1.cpp [ 55%] Linking CXX executable fileParsersCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fileParsersCatchTest.dir/link.d CMakeFiles/fileParsersCatchTest.dir/file_parsers_catch.cpp.o -o fileParsersCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target fileParsersCatchTest make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake "--color=" rdfragcatalog make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -MF CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp [ 55%] Linking CXX executable filterCatalogTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/filterCatalogTest.dir/link.d CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target filterCatalogTest make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake "--color=" Descriptors make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o -MF CMakeFiles/Descriptors.dir/Crippen.cpp.o.d -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Crippen.cpp [ 55%] Linking CXX executable testChemTransforms cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testChemTransforms.dir/link.d CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target testChemTransforms make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake "--color=" testFingerprints make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o -MF CMakeFiles/testFingerprints.dir/test1.cpp.o.d -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/test1.cpp [ 55%] Linking CXX executable testFragCatalog cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testFragCatalog.dir/link.d CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog ../../../lib/libRDKitFragCatalog.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target testFragCatalog make -f Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/DependInfo.cmake "--color=" testMHFPFingerprint make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -MF CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o.d -o CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/testMHFPFingerprint.cpp [ 55%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp [ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -MF CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o.d -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/MolStandardize.cpp [ 55%] Linking CXX executable chemTransformsTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemTransformsTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/chemTransformsTestCatch.dir/link.d CMakeFiles/chemTransformsTestCatch.dir/catch_tests.cpp.o -o chemTransformsTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target chemTransformsTestCatch [ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o -MF CMakeFiles/MolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Metal.cpp [ 55%] Linking CXX executable testMHFPFingerprint cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMHFPFingerprint.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMHFPFingerprint.dir/link.d CMakeFiles/testMHFPFingerprint.dir/testMHFPFingerprint.cpp.o -o testMHFPFingerprint ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target testMHFPFingerprint make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake "--color=" testFingerprintGenerators make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -MF CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o.d -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp [ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o -MF CMakeFiles/Descriptors.dir/BCUT.cpp.o.d -o CMakeFiles/Descriptors.dir/BCUT.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/BCUT.cpp [ 55%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/BCUT.cpp: In function ‘std::pair RDKit::Descriptors::{anonymous}::BCUT2D(std::unique_ptr >&, const std::vector&)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/BCUT.cpp:70:71: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 70 | const std::vector &atom_props) { | ^ [ 55%] Linking CXX executable rxnTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rxnTestCatch.dir/link.d CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -o rxnTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitChemReactions.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 55%] Built target rxnTestCatch [ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o -MF CMakeFiles/MolStandardize.dir/Normalize.cpp.o.d -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Normalize.cpp [ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolDescriptors.cpp [ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o -MF CMakeFiles/MolStandardize.dir/Validate.cpp.o.d -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Validate.cpp [ 55%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o -MF CMakeFiles/Descriptors.dir/MolSurf.cpp.o.d -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolSurf.cpp [ 55%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp [ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o -MF CMakeFiles/MolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Charge.cpp [ 55%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp [ 55%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/MolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Tautomer.cpp [ 56%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o -MF CMakeFiles/Descriptors.dir/Lipinski.cpp.o.d -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Lipinski.cpp [ 56%] Linking CXX executable testFingerprintGenerators cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1 [ 56%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testFingerprintGenerators.dir/link.d CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 56%] Built target testFingerprintGenerators make -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/DependInfo.cmake "--color=" fpTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 56%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/catch_tests.cpp [ 56%] Linking CXX executable testFingerprints cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testFingerprints.dir/link.d CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 56%] Built target testFingerprints make -f Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/DependInfo.cmake "--color=" fpGenTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 56%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -MF CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o.d -o CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/fpgen_catch_tests.cpp [ 56%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdfragcatalog.dir/link.d -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libRDKitFragCatalog.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 56%] Built target rdfragcatalog make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake "--color=" testMolTransforms make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 56%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o -MF CMakeFiles/testMolTransforms.dir/test1.cpp.o.d -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms/test1.cpp [ 56%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o -MF CMakeFiles/Descriptors.dir/MQN.cpp.o.d -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MQN.cpp [ 56%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o -MF CMakeFiles/Descriptors.dir/Property.cpp.o.d -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Property.cpp [ 56%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/MolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Fragment.cpp [ 56%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -MF CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o.d -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/AUTOCORR2D.cpp [ 57%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp [ 57%] Linking CXX executable testMolTransforms cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMolTransforms.dir/link.d CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 57%] Built target testMolTransforms make -f Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/DependInfo.cmake "--color=" molTransformsTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 57%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/molTransformsTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/molTransformsTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/molTransformsTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms/catch_tests.cpp [ 57%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp [ 57%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp [ 57%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -MF CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o.d -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/USRDescriptor.cpp [ 57%] Linking CXX executable fpGenTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpGenTestCatch.dir/link.txt --verbose=1 [ 57%] Linking CXX executable fpTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fpGenTestCatch.dir/link.d CMakeFiles/fpGenTestCatch.dir/fpgen_catch_tests.cpp.o -o fpGenTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 57%] Built target fpGenTestCatch make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/DependInfo.cmake "--color=" forceFieldHelpersCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o -MF CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/catch_tests.cpp [ 58%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fpTestCatch.dir/link.d CMakeFiles/fpTestCatch.dir/catch_tests.cpp.o -o fpTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 58%] Built target fpTestCatch make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake "--color=" testMMFFForceFieldHelpers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -MF CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o.d -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp [ 59%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.cpp [ 60%] Linking CXX executable testReaction cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testReaction.dir/link.d CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 60%] Built target testReaction make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/DependInfo.cmake "--color=" testMMFFForceFieldHelpersMultiThread make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 60%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -MF CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o.d -o CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/testMultiThread.cpp [ 60%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AtomFeat.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AtomFeat.cpp.o -MF CMakeFiles/Descriptors.dir/AtomFeat.cpp.o.d -o CMakeFiles/Descriptors.dir/AtomFeat.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/AtomFeat.cpp [ 60%] Linking CXX executable molTransformsTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTransformsTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molTransformsTestCatch.dir/link.d CMakeFiles/molTransformsTestCatch.dir/catch_tests.cpp.o -o molTransformsTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 60%] Built target molTransformsTestCatch make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake "--color=" testUFFForceFieldHelpers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 60%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -MF CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o.d -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp [ 60%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o -MF CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o.d -o CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/OxidationNumbers.cpp [ 60%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp [ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DCLV.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DCLV.cpp.o -MF CMakeFiles/Descriptors.dir/DCLV.cpp.o.d -o CMakeFiles/Descriptors.dir/DCLV.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/DCLV.cpp [ 61%] Linking CXX executable forceFieldHelpersCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceFieldHelpersCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/forceFieldHelpersCatch.dir/link.d CMakeFiles/forceFieldHelpersCatch.dir/catch_tests.cpp.o -o forceFieldHelpersCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 61%] Built target forceFieldHelpersCatch make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake "--color=" testCrystalForceField make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 61%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -MF CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o.d -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp [ 61%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp [ 61%] Linking CXX executable testMMFFForceFieldHelpersMultiThread cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/link.d CMakeFiles/testMMFFForceFieldHelpersMultiThread.dir/testMultiThread.cpp.o -o testMMFFForceFieldHelpersMultiThread ../../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 61%] Built target testMMFFForceFieldHelpersMultiThread make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake "--color=" testDistGeomHelpers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -MF CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o.d -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp [ 61%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp [ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o -MF CMakeFiles/Descriptors.dir/EEM.cpp.o.d -o CMakeFiles/Descriptors.dir/EEM.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/EEM.cpp [ 61%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp [ 61%] Linking CXX executable testMMFFForceFieldHelpers cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 [ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o -MF CMakeFiles/Descriptors.dir/PBF.cpp.o.d -o CMakeFiles/Descriptors.dir/PBF.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/PBF.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMMFFForceFieldHelpers.dir/link.d CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 61%] Built target testMMFFForceFieldHelpers make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/DependInfo.cmake "--color=" distGeomHelpersCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -MF CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/catch_tests.cpp [ 61%] Linking CXX executable testCrystalForceField cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testCrystalForceField.dir/link.d CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField ../../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 61%] Built target testCrystalForceField make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake "--color=" rdDistGeom make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_MAX_ARITY=32 -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -MF CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o.d -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp [ 61%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp [ 61%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.cpp [ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o -MF CMakeFiles/Descriptors.dir/PMI.cpp.o.d -o CMakeFiles/Descriptors.dir/PMI.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/PMI.cpp [ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -MF CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o.d -o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/AUTOCORR3D.cpp [ 62%] Linking CXX executable testUFFForceFieldHelpers cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testUFFForceFieldHelpers.dir/link.d CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 62%] Built target testUFFForceFieldHelpers make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake "--color=" testMolAlign make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 62%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -MF CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o.d -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/testMolAlign.cpp [ 62%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp [ 63%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.cpp [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o -MF CMakeFiles/Descriptors.dir/RDF.cpp.o.d -o CMakeFiles/Descriptors.dir/RDF.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/RDF.cpp [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o -MF CMakeFiles/Descriptors.dir/MORSE.cpp.o.d -o CMakeFiles/Descriptors.dir/MORSE.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MORSE.cpp [ 63%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -MF CMakeFiles/Descriptors.dir/GETAWAY.cpp.o.d -o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/GETAWAY.cpp [ 63%] Linking CXX executable testMolAlign cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMolAlign.dir/link.d CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 63%] Built target testMolAlign make -f Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/DependInfo.cmake "--color=" molAlignCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 63%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/catch_tests.cpp [ 64%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 [ 64%] Linking CXX executable testDistGeomHelpers cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdDistGeom.dir/link.d -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Built target rdDistGeom make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake "--color=" testFeatures make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o -MF CMakeFiles/testFeatures.dir/testFeatures.cpp.o.d -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testDistGeomHelpers.dir/link.d CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Built target testDistGeomHelpers make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake "--color=" testShapeHelpers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -MF CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o.d -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake "--color=" testMolCatalog make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o -MF CMakeFiles/testMolCatalog.dir/test1.cpp.o.d -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/test1.cpp [ 64%] Linking CXX executable distGeomHelpersCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/distGeomHelpersCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/distGeomHelpersCatch.dir/link.d CMakeFiles/distGeomHelpersCatch.dir/catch_tests.cpp.o -o distGeomHelpersCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Built target distGeomHelpersCatch make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake "--color=" MolDraw2D make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.cpp [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o -MF CMakeFiles/Descriptors.dir/WHIM.cpp.o.d -o CMakeFiles/Descriptors.dir/WHIM.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/WHIM.cpp [ 64%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolStandardize.dir/link.d -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 CMakeFiles/MolStandardize.dir/Pipeline.cpp.o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Built target MolStandardize make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake "--color=" FMCS make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o -MF CMakeFiles/FMCS.dir/FMCS.cpp.o.d -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/FMCS.cpp In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/bits/stl_tree.h:65, from /usr/include/c++/15/map:64, from /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Dict.h:19, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryOps.h:16, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.cpp:16: /usr/include/c++/15/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.cpp:553:16: required from here 553 | make_pair(double(screen_cds.first), double(screen_cds.second))); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 1164 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 64%] Linking CXX executable testShapeHelpers cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testShapeHelpers.dir/link.d CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers ../../../lib/libRDKitShapeHelpers.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Built target testShapeHelpers make -f Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build.make Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/DependInfo.cmake "--color=" molHashCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build.make Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolHash/CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/catch_tests.cpp [ 64%] Linking CXX executable testMolCatalog cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMolCatalog.dir/link.d CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog ../../../lib/libRDKitMolCatalog.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Built target testMolCatalog make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake "--color=" MMPA [ 64%] Linking CXX executable molAlignCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/molAlignCatchTest.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o -MF CMakeFiles/MMPA.dir/MMPA.cpp.o.d -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA/MMPA.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molAlignCatchTest.dir/link.d CMakeFiles/molAlignCatchTest.dir/catch_tests.cpp.o -o molAlignCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Built target molAlignCatchTest make -f Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/build.make Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/DependInfo.cmake "--color=" RascalMCES make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/build.make Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalMCES.cpp [ 65%] Linking CXX executable testFeatures cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testFeatures.dir/link.d CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures ../../../lib/libRDKitMolChemicalFeatures.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 65%] Built target testFeatures make -f Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/DependInfo.cmake "--color=" MolEnumerator make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 65%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o -MF CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o.d -o CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.cpp [ 65%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp [ 65%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o -MF CMakeFiles/FMCS.dir/Seed.cpp.o.d -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Seed.cpp [ 66%] Linking CXX shared library ../../../lib/libRDKitMMPA.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MMPA.dir/link.d -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2025.03.6 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2025.03.6 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 66%] Built target MMPA make -f Code/GraphMol/EnumerateStereoisomers/CMakeFiles/EnumerateStereoisomers.dir/build.make Code/GraphMol/EnumerateStereoisomers/CMakeFiles/EnumerateStereoisomers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers/CMakeFiles/EnumerateStereoisomers.dir/DependInfo.cmake "--color=" EnumerateStereoisomers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/EnumerateStereoisomers/CMakeFiles/EnumerateStereoisomers.dir/build.make Code/GraphMol/EnumerateStereoisomers/CMakeFiles/EnumerateStereoisomers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 66%] Building CXX object Code/GraphMol/EnumerateStereoisomers/CMakeFiles/EnumerateStereoisomers.dir/EnumerateStereoisomers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DEnumerateStereoisomers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_ENUMERATESTEREOISOMERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/EnumerateStereoisomers/CMakeFiles/EnumerateStereoisomers.dir/EnumerateStereoisomers.cpp.o -MF CMakeFiles/EnumerateStereoisomers.dir/EnumerateStereoisomers.cpp.o.d -o CMakeFiles/EnumerateStereoisomers.dir/EnumerateStereoisomers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers/EnumerateStereoisomers.cpp [ 66%] Linking CXX executable molHashCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/molHashCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molHashCatchTest.dir/link.d CMakeFiles/molHashCatchTest.dir/catch_tests.cpp.o -o molHashCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitMolHash.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 66%] Built target molHashCatchTest [ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -MF CMakeFiles/Descriptors.dir/CoulombMat.cpp.o.d -o CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/CoulombMat.cpp [ 66%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o -MF CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o.d -o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/PositionVariation.cpp [ 67%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/TargetMatch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/TargetMatch.cpp.o -MF CMakeFiles/FMCS.dir/TargetMatch.cpp.o.d -o CMakeFiles/FMCS.dir/TargetMatch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/TargetMatch.cpp [ 67%] Building CXX object Code/GraphMol/EnumerateStereoisomers/CMakeFiles/EnumerateStereoisomers.dir/Flippers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DEnumerateStereoisomers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_ENUMERATESTEREOISOMERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/EnumerateStereoisomers/CMakeFiles/EnumerateStereoisomers.dir/Flippers.cpp.o -MF CMakeFiles/EnumerateStereoisomers.dir/Flippers.cpp.o.d -o CMakeFiles/EnumerateStereoisomers.dir/Flippers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers/Flippers.cpp [ 67%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp [ 67%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalCluster.cpp make -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/DependInfo.cmake "--color=" Deprotect make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 67%] Building CXX object Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDeprotect_EXPORTS -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o -MF CMakeFiles/Deprotect.dir/Deprotect.cpp.o.d -o CMakeFiles/Deprotect.dir/Deprotect.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect/Deprotect.cpp [ 67%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -MF CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o.d -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp [ 68%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1 [ 68%] Linking CXX shared library ../../../lib/libRDKitEnumerateStereoisomers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EnumerateStereoisomers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/EnumerateStereoisomers.dir/link.d -Wl,-soname,libRDKitEnumerateStereoisomers.so.1 -o ../../../lib/libRDKitEnumerateStereoisomers.so.1.2025.03.6 CMakeFiles/EnumerateStereoisomers.dir/EnumerateStereoisomers.cpp.o CMakeFiles/EnumerateStereoisomers.dir/Flippers.cpp.o ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEnumerateStereoisomers.so.1.2025.03.6 ../../../lib/libRDKitEnumerateStereoisomers.so.1 ../../../lib/libRDKitEnumerateStereoisomers.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 68%] Built target EnumerateStereoisomers make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Trajectory /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake "--color=" trajectoryTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 68%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -MF CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o.d -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Trajectory/trajectoryTest.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Descriptors.dir/link.d -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2025.03.6 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/BCUT.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o CMakeFiles/Descriptors.dir/AtomFeat.cpp.o CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o CMakeFiles/Descriptors.dir/DCLV.cpp.o CMakeFiles/Descriptors.dir/EEM.cpp.o CMakeFiles/Descriptors.dir/PBF.cpp.o CMakeFiles/Descriptors.dir/PMI.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o CMakeFiles/Descriptors.dir/RDF.cpp.o CMakeFiles/Descriptors.dir/MORSE.cpp.o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o CMakeFiles/Descriptors.dir/WHIM.cpp.o CMakeFiles/Descriptors.dir/CoulombMat.cpp.o ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 68%] Built target Descriptors make -f Code/GraphMol/DetermineBonds/CMakeFiles/DetermineBonds.dir/build.make Code/GraphMol/DetermineBonds/CMakeFiles/DetermineBonds.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DetermineBonds /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds/CMakeFiles/DetermineBonds.dir/DependInfo.cmake "--color=" DetermineBonds make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/DetermineBonds/CMakeFiles/DetermineBonds.dir/build.make Code/GraphMol/DetermineBonds/CMakeFiles/DetermineBonds.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 68%] Building CXX object Code/GraphMol/DetermineBonds/CMakeFiles/DetermineBonds.dir/DetermineBonds.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DDetermineBonds_EXPORTS -DRDKIT_DETERMINEBONDS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/DetermineBonds/CMakeFiles/DetermineBonds.dir/DetermineBonds.cpp.o -MF CMakeFiles/DetermineBonds.dir/DetermineBonds.cpp.o.d -o CMakeFiles/DetermineBonds.dir/DetermineBonds.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DetermineBonds/DetermineBonds.cpp [ 68%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalButinaCluster.cpp [ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp [ 68%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o -MF CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o.d -o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/LinkNode.cpp [ 68%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o -MF CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o.d -o CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/lap_a_la_scipy.cpp [ 68%] Linking CXX shared library ../../../lib/libRDKitDeprotect.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect && /usr/bin/cmake -E cmake_link_script CMakeFiles/Deprotect.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Deprotect.dir/link.d -Wl,-soname,libRDKitDeprotect.so.1 -o ../../../lib/libRDKitDeprotect.so.1.2025.03.6 CMakeFiles/Deprotect.dir/Deprotect.cpp.o ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDeprotect.so.1.2025.03.6 ../../../lib/libRDKitDeprotect.so.1 ../../../lib/libRDKitDeprotect.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 68%] Built target Deprotect make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake "--color=" molInterchangeTest1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 68%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/External/rapidjson-1.1.0/include -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -MF CMakeFiles/molInterchangeTest1.dir/test1.cpp.o.d -o CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/test1.cpp [ 68%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o -MF CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o.d -o CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/PartitionSet.cpp [ 68%] Linking CXX executable trajectoryTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1 [ 68%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalResult.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalResult.cpp.o -MF CMakeFiles/RascalMCES.dir/RascalResult.cpp.o.d -o CMakeFiles/RascalMCES.dir/RascalResult.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalResult.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/trajectoryTest.dir/link.d CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 68%] Built target trajectoryTest [ 68%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -MF CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o.d -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/SubstructMatchCustom.cpp [ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -MF CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/AtomSymbol.cpp [ 68%] Linking CXX shared library ../../../lib/libRDKitDetermineBonds.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds && /usr/bin/cmake -E cmake_link_script CMakeFiles/DetermineBonds.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/DetermineBonds.dir/link.d -Wl,-soname,libRDKitDetermineBonds.so.1 -o ../../../lib/libRDKitDetermineBonds.so.1.2025.03.6 CMakeFiles/DetermineBonds.dir/DetermineBonds.cpp.o ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDetermineBonds.so.1.2025.03.6 ../../../lib/libRDKitDetermineBonds.so.1 ../../../lib/libRDKitDetermineBonds.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 68%] Built target DetermineBonds make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/DependInfo.cmake "--color=" molInterchangeCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 68%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/External/rapidjson-1.1.0/include -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o -MF CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o.d -o CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/molinterchange_catch.cpp [ 68%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp [ 69%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMol.cpp [ 69%] Linking CXX shared library ../../../lib/libRDKitFMCS.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 [ 70%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -MF CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o.d -o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/RepeatUnit.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/FMCS.dir/link.d -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2025.03.6 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/TargetMatch.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 70%] Built target FMCS make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake "--color=" rdmolops make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 70%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o -MF CMakeFiles/rdmolops.dir/rdmolops.cpp.o.d -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdmolops.cpp [ 70%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp [ 70%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMol.cpp: In member function ‘std::pair RDKit::MolDraw2D_detail::DrawMol::getBondColours(RDKit::Bond*)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMol.cpp:2337:69: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 2337 | std::pair DrawMol::getBondColours(Bond *bond) { | ^ [ 70%] Linking CXX executable molInterchangeTest1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/molInterchangeTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molInterchangeTest1.dir/link.d CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -o molInterchangeTest1 ../../../lib/libRDKitMolInterchange.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 70%] Built target molInterchangeTest1 make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake "--color=" molStandardizeTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 70%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o -MF CMakeFiles/molStandardizeTest.dir/test1.cpp.o.d -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/test1.cpp [ 70%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o -MF CMakeFiles/rdmolops.dir/MolOps.cpp.o.d -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/MolOps.cpp [ 70%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCHLasso.cpp [ 70%] Linking CXX executable molInterchangeCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/molInterchangeCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molInterchangeCatchTest.dir/link.d CMakeFiles/molInterchangeCatchTest.dir/molinterchange_catch.cpp.o -o molInterchangeCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolInterchange.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 70%] Built target molInterchangeCatchTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake "--color=" molNormalizeTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 70%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -MF CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o.d -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/testNormalize.cpp [ 70%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawShape.cpp [ 70%] Linking CXX shared library ../../../lib/libRDKitMolEnumerator.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolEnumerator.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolEnumerator.dir/link.d -Wl,-soname,libRDKitMolEnumerator.so.1 -o ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1 ../../../lib/libRDKitMolEnumerator.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 70%] Built target MolEnumerator make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake "--color=" molValidateTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 71%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o -MF CMakeFiles/molValidateTest.dir/testValidate.cpp.o.d -o CMakeFiles/molValidateTest.dir/testValidate.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/testValidate.cpp [ 72%] Linking CXX shared library ../../../lib/libRDKitRascalMCES.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_link_script CMakeFiles/RascalMCES.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/RascalMCES.dir/link.d -Wl,-soname,libRDKitRascalMCES.so.1 -o ../../../lib/libRDKitRascalMCES.so.1.2025.03.6 CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o CMakeFiles/RascalMCES.dir/RascalResult.cpp.o ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRascalMCES.so.1.2025.03.6 ../../../lib/libRDKitRascalMCES.so.1 ../../../lib/libRDKitRascalMCES.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 72%] Built target RascalMCES make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake "--color=" molChargeTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 72%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o -MF CMakeFiles/molChargeTest.dir/testCharge.cpp.o.d -o CMakeFiles/molChargeTest.dir/testCharge.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/testCharge.cpp [ 72%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawText.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawText.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawText.cpp [ 72%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextNotFT.cpp [ 72%] Linking CXX executable molStandardizeTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molStandardizeTest.dir/link.d CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 72%] Built target molStandardizeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake "--color=" molTautomerTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 72%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -MF CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o.d -o CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/testTautomer.cpp [ 72%] Linking CXX executable molNormalizeTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molNormalizeTest.dir/link.d CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -o molNormalizeTest ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 72%] Built target molNormalizeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake "--color=" molStandardizeSmallTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 72%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -MF CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o.d -o CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/test2.cpp [ 72%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextSVG.cpp In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/string:53, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawText.h:19, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawText.cpp:13: /usr/include/c++/15/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawText.cpp:165:47: required from here 165 | tl = mol_draw.getAtomCoords(std::make_pair(tl.x, tl.y)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 1164 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 72%] Linking CXX executable molValidateTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molValidateTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molValidateTest.dir/link.d CMakeFiles/molValidateTest.dir/testValidate.cpp.o -o molValidateTest ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 72%] Built target molValidateTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake "--color=" molFragmentTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 72%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -MF CMakeFiles/molFragmentTest.dir/testFragment.cpp.o.d -o CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/testFragment.cpp [ 72%] Linking CXX executable molChargeTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molChargeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molChargeTest.dir/link.d CMakeFiles/molChargeTest.dir/testCharge.cpp.o -o molChargeTest ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 72%] Built target molChargeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/DependInfo.cmake "--color=" molStandardizeCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 72%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/catch_tests.cpp [ 72%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DJS.cpp [ 72%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextJS.cpp [ 73%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp [ 73%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextCairo.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextCairo.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextCairo.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextCairo.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextCairo.cpp [ 73%] Linking CXX executable molStandardizeSmallTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molStandardizeSmallTest.dir/link.d CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -o molStandardizeSmallTest ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 73%] Built target molStandardizeSmallTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/DependInfo.cmake "--color=" molStandardizePipelineTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 73%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o -MF CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o.d -o CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/testPipeline.cpp [ 73%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFT.cpp [ 73%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFTSVG.cpp [ 74%] Linking CXX executable molFragmentTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molFragmentTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molFragmentTest.dir/link.d CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -o molFragmentTest ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 74%] Built target molFragmentTest [ 74%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFTJS.cpp [ 74%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFTCairo.cpp [ 74%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -MF CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o.d -o CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/ChiralityOps.cpp make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake "--color=" rdMolStandardize make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 75%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -MF CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp make -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/DependInfo.cmake "--color=" ScaffoldNetwork make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 75%] Building CXX object Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SCAFFOLDNETWORK_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DScaffoldNetwork_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -MF CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o.d -o CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork/ScaffoldNetwork.cpp [ 75%] Linking CXX executable molTautomerTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molTautomerTest.dir/link.d CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -o molTautomerTest ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 75%] Built target molTautomerTest make -f Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/DependInfo.cmake "--color=" testMolEnumerator make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 75%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o -MF CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o.d -o CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/enumerator_catch.cpp [ 75%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolDraw2D.dir/link.d -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2025.03.6 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o CMakeFiles/MolDraw2D.dir/DrawText.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextCairo.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTCairo.cpp.o ../../../lib/libRDKitChemReactions.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libfreetype.so ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcairo.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2025.03.6 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 75%] Built target MolDraw2D make -f Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/DependInfo.cmake "--color=" rdMolEnumerator make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 75%] Building CXX object Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolEnumerator_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -MF CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o.d -o CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/Wrap/rdMolEnumerator.cpp [ 75%] Linking CXX executable molStandardizePipelineTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizePipelineTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molStandardizePipelineTest.dir/link.d CMakeFiles/molStandardizePipelineTest.dir/testPipeline.cpp.o -o molStandardizePipelineTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 75%] Built target molStandardizePipelineTest make -f Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/DependInfo.cmake "--color=" testAbbreviations make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 75%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/testAbbreviations.dir/catch_tests.cpp.o -MF CMakeFiles/testAbbreviations.dir/catch_tests.cpp.o.d -o CMakeFiles/testAbbreviations.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations/catch_tests.cpp make -f Code/GraphMol/MolProcessing/CMakeFiles/MolProcessing.dir/build.make Code/GraphMol/MolProcessing/CMakeFiles/MolProcessing.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProcessing /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing/CMakeFiles/MolProcessing.dir/DependInfo.cmake "--color=" MolProcessing make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolProcessing/CMakeFiles/MolProcessing.dir/build.make Code/GraphMol/MolProcessing/CMakeFiles/MolProcessing.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 76%] Building CXX object Code/GraphMol/MolProcessing/CMakeFiles/MolProcessing.dir/MolProcessing.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMolProcessing_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLPROCESSING_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolProcessing/CMakeFiles/MolProcessing.dir/MolProcessing.cpp.o -MF CMakeFiles/MolProcessing.dir/MolProcessing.cpp.o.d -o CMakeFiles/MolProcessing.dir/MolProcessing.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProcessing/MolProcessing.cpp [ 77%] Linking CXX executable molStandardizeCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeCatchTest.dir/link.txt --verbose=1 [ 77%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/molStandardizeCatchTest.dir/link.d CMakeFiles/molStandardizeCatchTest.dir/catch_tests.cpp.o -o molStandardizeCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 77%] Built target molStandardizeCatchTest make -f Code/GraphMol/MolInteractionFields/CMakeFiles/testMIF.dir/build.make Code/GraphMol/MolInteractionFields/CMakeFiles/testMIF.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields/CMakeFiles/testMIF.dir/DependInfo.cmake "--color=" testMIF make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolInteractionFields/CMakeFiles/testMIF.dir/build.make Code/GraphMol/MolInteractionFields/CMakeFiles/testMIF.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 77%] Building CXX object Code/GraphMol/MolInteractionFields/CMakeFiles/testMIF.dir/testMIF.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolInteractionFields/CMakeFiles/testMIF.dir/testMIF.cpp.o -MF CMakeFiles/testMIF.dir/testMIF.cpp.o.d -o CMakeFiles/testMIF.dir/testMIF.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/testMIF.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdmolops.dir/link.d -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 77%] Built target rdmolops make -f Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/build.make Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/DependInfo.cmake "--color=" MarvinParser make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/build.make Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 77%] Building CXX object Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o [ 77%] Linking CXX shared library ../../../lib/libRDKitScaffoldNetwork.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScaffoldNetwork.dir/link.txt --verbose=1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMarvinParser_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MARVINPARSER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o -MF CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o.d -o CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse/MarvinParser.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ScaffoldNetwork.dir/link.d -Wl,-soname,libRDKitScaffoldNetwork.so.1 -o ../../../lib/libRDKitScaffoldNetwork.so.1.2025.03.6 CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitScaffoldNetwork.so.1.2025.03.6 ../../../lib/libRDKitScaffoldNetwork.so.1 ../../../lib/libRDKitScaffoldNetwork.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 77%] Built target ScaffoldNetwork make -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/TautomerQuery /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/DependInfo.cmake "--color=" TautomerQuery make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 77%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_TAUTOMERQUERY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DTautomerQuery_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -MF CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o.d -o CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/TautomerQuery/TautomerQuery.cpp [ 77%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Validate.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap/Validate.cpp [ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdMolEnumerator.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolEnumerator.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolEnumerator.dir/link.d -o ../../../../rdkit/Chem/rdMolEnumerator.so CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o ../../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 77%] Built target rdMolEnumerator make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake "--color=" testDescriptors make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o -MF CMakeFiles/testDescriptors.dir/test.cpp.o.d -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/test.cpp [ 77%] Linking CXX shared library ../../../lib/libRDKitMolProcessing.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolProcessing.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MolProcessing.dir/link.d -Wl,-soname,libRDKitMolProcessing.so.1 -o ../../../lib/libRDKitMolProcessing.so.1.2025.03.6 CMakeFiles/MolProcessing.dir/MolProcessing.cpp.o ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitRDStreams.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolProcessing.so.1.2025.03.6 ../../../lib/libRDKitMolProcessing.so.1 ../../../lib/libRDKitMolProcessing.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 77%] Built target MolProcessing make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake "--color=" testAUTOCORR2D make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -MF CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o.d -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp [ 78%] Linking CXX shared library ../../../lib/libRDKitTautomerQuery.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_link_script CMakeFiles/TautomerQuery.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/TautomerQuery.dir/link.d -Wl,-soname,libRDKitTautomerQuery.so.1 -o ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1 ../../../lib/libRDKitTautomerQuery.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Built target TautomerQuery make -f Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/DependInfo.cmake "--color=" testATF make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/testATF.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testATF.dir/testATF.cpp.o -MF CMakeFiles/testATF.dir/testATF.cpp.o.d -o CMakeFiles/testATF.dir/testATF.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testATF.cpp [ 78%] Linking CXX executable testMolEnumerator cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolEnumerator.dir/link.txt --verbose=1 [ 78%] Linking CXX executable testAbbreviations cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAbbreviations.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMolEnumerator.dir/link.d CMakeFiles/testMolEnumerator.dir/enumerator_catch.cpp.o -o testMolEnumerator ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Built target testMolEnumerator make -f Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/DependInfo.cmake "--color=" testBCUT make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/testBCUT.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testBCUT.dir/testBCUT.cpp.o -MF CMakeFiles/testBCUT.dir/testBCUT.cpp.o.d -o CMakeFiles/testBCUT.dir/testBCUT.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testBCUT.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testAbbreviations.dir/link.d CMakeFiles/testAbbreviations.dir/catch_tests.cpp.o -o testAbbreviations ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitAbbreviations.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Built target testAbbreviations make -f Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/DependInfo.cmake "--color=" testEEM make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/testEEM.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testEEM.dir/testEEM.cpp.o -MF CMakeFiles/testEEM.dir/testEEM.cpp.o.d -o CMakeFiles/testEEM.dir/testEEM.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testEEM.cpp [ 78%] Linking CXX executable testMIF cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMIF.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMIF.dir/link.d CMakeFiles/testMIF.dir/testMIF.cpp.o -o testMIF ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolInteractionFields.so.1.2025.03.6 ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Built target testMIF [ 78%] Building CXX object Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMarvinParser_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MARVINPARSER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o -MF CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o.d -o CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse/MarvinWriter.cpp [ 78%] Linking CXX executable testAUTOCORR2D cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testAUTOCORR2D.dir/link.d CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -o testAUTOCORR2D ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Built target testAUTOCORR2D make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/DependInfo.cmake "--color=" testPBF make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/testPBF.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/testPBF.cpp.o -MF CMakeFiles/testPBF.dir/testPBF.cpp.o.d -o CMakeFiles/testPBF.dir/testPBF.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testPBF.cpp [ 78%] Building CXX object Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DMarvinParser_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MARVINPARSER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o -MF CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o.d -o CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse/MarvinDefs.cpp [ 78%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap/Charge.cpp [ 78%] Linking CXX executable testATF cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testATF.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testATF.dir/link.d CMakeFiles/testATF.dir/testATF.cpp.o -o testATF ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Built target testATF make -f Code/GraphMol/Descriptors/CMakeFiles/testRDFcustom.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDFcustom.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testRDFcustom.dir/DependInfo.cmake "--color=" testRDFcustom make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testRDFcustom.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDFcustom.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testRDFcustom.dir/testRDFcustom.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testRDFcustom.dir/testRDFcustom.cpp.o -MF CMakeFiles/testRDFcustom.dir/testRDFcustom.cpp.o.d -o CMakeFiles/testRDFcustom.dir/testRDFcustom.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testRDFcustom.cpp [ 78%] Linking CXX executable testBCUT cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testBCUT.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testBCUT.dir/link.d CMakeFiles/testBCUT.dir/testBCUT.cpp.o -o testBCUT ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Built target testBCUT make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/DependInfo.cmake "--color=" testRDF make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/testRDF.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/testRDF.cpp.o -MF CMakeFiles/testRDF.dir/testRDF.cpp.o.d -o CMakeFiles/testRDF.dir/testRDF.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testRDF.cpp [ 78%] Linking CXX executable testEEM cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEEM.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testEEM.dir/link.d CMakeFiles/testEEM.dir/testEEM.cpp.o -o testEEM ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Built target testEEM make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/DependInfo.cmake "--color=" testMORSE make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/testMORSE.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/testMORSE.cpp.o -MF CMakeFiles/testMORSE.dir/testMORSE.cpp.o.d -o CMakeFiles/testMORSE.dir/testMORSE.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testMORSE.cpp [ 78%] Linking CXX executable testPBF cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPBF.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testPBF.dir/link.d CMakeFiles/testPBF.dir/testPBF.cpp.o -o testPBF ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Built target testPBF [ 78%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp [ 78%] Linking CXX executable testRDF cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDF.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testRDF.dir/link.d CMakeFiles/testRDF.dir/testRDF.cpp.o -o testRDF ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 78%] Built target testRDF make -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/DependInfo.cmake "--color=" test3D make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 79%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/test3D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/test3D.cpp.o -MF CMakeFiles/test3D.dir/test3D.cpp.o.d -o CMakeFiles/test3D.dir/test3D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/test3D.cpp [ 80%] Linking CXX executable testDescriptors cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testDescriptors.dir/link.d CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Built target testDescriptors make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/DependInfo.cmake "--color=" testWHIM make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/testWHIM.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/testWHIM.cpp.o -MF CMakeFiles/testWHIM.dir/testWHIM.cpp.o.d -o CMakeFiles/testWHIM.dir/testWHIM.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testWHIM.cpp [ 80%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/DependInfo.cmake "--color=" testGETAWAY make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -MF CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o.d -o CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testGETAWAY.cpp [ 80%] Linking CXX executable testRDFcustom cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDFcustom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testRDFcustom.dir/link.d CMakeFiles/testRDFcustom.dir/testRDFcustom.cpp.o -o testRDFcustom ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Built target testRDFcustom make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/DependInfo.cmake "--color=" testAUTOCORR3D make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -MF CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o.d -o CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp [ 80%] Linking CXX executable testMORSE cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMORSE.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMORSE.dir/link.d CMakeFiles/testMORSE.dir/testMORSE.cpp.o -o testMORSE ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Built target testMORSE [ 80%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap/Metal.cpp [ 80%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp [ 80%] Linking CXX executable testWHIM cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testWHIM.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testWHIM.dir/link.d CMakeFiles/testWHIM.dir/testWHIM.cpp.o -o testWHIM ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Built target testWHIM make -f Code/GraphMol/Descriptors/CMakeFiles/testCoulombMat.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testCoulombMat.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testCoulombMat.dir/DependInfo.cmake "--color=" testCoulombMat make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testCoulombMat.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testCoulombMat.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testCoulombMat.dir/testCoulombMat.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/testCoulombMat.dir/testCoulombMat.cpp.o -MF CMakeFiles/testCoulombMat.dir/testCoulombMat.cpp.o.d -o CMakeFiles/testCoulombMat.dir/testCoulombMat.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/testCoulombMat.cpp [ 80%] Linking CXX executable testGETAWAY cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGETAWAY.dir/link.txt --verbose=1 [ 80%] Linking CXX executable testAUTOCORR3D cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR3D.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testGETAWAY.dir/link.d CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -o testGETAWAY ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Built target testGETAWAY make -f Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/DependInfo.cmake "--color=" descriptorsTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Descriptors/CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/catch_tests.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testAUTOCORR3D.dir/link.d CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -o testAUTOCORR3D ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Built target testAUTOCORR3D make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake "--color=" rdMolDescriptors make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -MF CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o.d -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp [ 80%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap/Pipeline.cpp [ 80%] Linking CXX executable test3D cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/test3D.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test3D.dir/link.d CMakeFiles/test3D.dir/test3D.cpp.o -o test3D ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Built target test3D make -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/DependInfo.cmake "--color=" O3AAlign make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DO3AAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -MF CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o.d -o CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake "--color=" moldraw2DTest1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -MF CMakeFiles/moldraw2DTest1.dir/test1.cpp.o.d -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/test1.cpp /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp: In function ‘std::pair {anonymous}::{anonymous}::BCUT2D_list(const RDKit::ROMol&, boost::python::list)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:444:61: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 444 | python::list atomprops) { | ^ [ 80%] Linking CXX shared library ../../../lib/libRDKitMarvinParser.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/MarvinParser.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/MarvinParser.dir/link.d -Wl,-soname,libRDKitMarvinParser.so.1 -o ../../../lib/libRDKitMarvinParser.so.1.2025.03.6 CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMarvinParser.so.1.2025.03.6 ../../../lib/libRDKitMarvinParser.so.1 ../../../lib/libRDKitMarvinParser.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Built target MarvinParser make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/DependInfo.cmake "--color=" moldraw2DTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/catch_tests.cpp [ 80%] Linking CXX executable testCoulombMat cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCoulombMat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testCoulombMat.dir/link.d CMakeFiles/testCoulombMat.dir/testCoulombMat.cpp.o -o testCoulombMat ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Built target testCoulombMat make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake "--color=" moldraw2DRxnTest1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -MF CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o.d -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/rxn_test1.cpp In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/bits/specfun.h:43, from /usr/include/c++/15/cmath:3913, from /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/types.h:21, from /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/utils.h:15, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/test1.cpp:12: /usr/include/c++/15/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/test1.cpp:1593:46: required from here 1593 | drawer.getAtomCoords(std::make_pair(ocoords.x, ocoords.y)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 1164 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 80%] Linking CXX executable descriptorsTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/descriptorsTestCatch.dir/link.txt --verbose=1 make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake "--color=" rdMolDraw2D make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/usr/include/freetype2 -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -MF CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o.d -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/descriptorsTestCatch.dir/link.d CMakeFiles/descriptorsTestCatch.dir/catch_tests.cpp.o -o descriptorsTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target descriptorsTestCatch make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake "--color=" testFMCS make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -MF CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o.d -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/testFMCS_Unit.cpp [ 81%] Linking CXX shared library ../../../lib/libRDKitO3AAlign.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/O3AAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/O3AAlign.dir/link.d -Wl,-soname,libRDKitO3AAlign.so.1 -o ../../../lib/libRDKitO3AAlign.so.1.2025.03.6 CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitO3AAlign.so.1.2025.03.6 ../../../lib/libRDKitO3AAlign.so.1 ../../../lib/libRDKitO3AAlign.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target O3AAlign make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake "--color=" rdFMCS make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -MF CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o.d -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp In file included from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/bits/unique_ptr.h:42, from /usr/include/c++/15/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:9, from /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:9, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp:11: In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::append(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1536:42, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator+=(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1478:28, inlined from ‘static void boost::python::map_indexing_suite::extension_def(Class&) [with Class = boost::python::class_, RDKit::MolStandardize::Tautomer>, boost::noncopyable_::noncopyable>; Container = std::map, RDKit::MolStandardize::Tautomer>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_map_derived_policies, RDKit::MolStandardize::Tautomer>, true>]’ at /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:77:23: /usr/include/c++/15/bits/basic_string.h:239:28: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)&class_name_extractor + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p’ may be used uninitialized [-Wmaybe-uninitialized] 239 | { return _M_dataplus._M_p; } | ^~~~ /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp: In static member function ‘static void boost::python::map_indexing_suite::extension_def(Class&) [with Class = boost::python::class_, RDKit::MolStandardize::Tautomer>, boost::noncopyable_::noncopyable>; Container = std::map, RDKit::MolStandardize::Tautomer>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_map_derived_policies, RDKit::MolStandardize::Tautomer>, true>]’: /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:76:34: note: ‘class_name_extractor’ declared here 76 | extract class_name_extractor(class_name); | ^~~~~~~~~~~~~~~~~~~~ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::append(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1536:28, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator+=(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1478:28, inlined from ‘static void boost::python::map_indexing_suite::extension_def(Class&) [with Class = boost::python::class_, RDKit::MolStandardize::Tautomer>, boost::noncopyable_::noncopyable>; Container = std::map, RDKit::MolStandardize::Tautomer>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_map_derived_policies, RDKit::MolStandardize::Tautomer>, true>]’ at /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:77:23: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)&class_name_extractor + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_string_length’ may be used uninitialized [-Wmaybe-uninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp: In static member function ‘static void boost::python::map_indexing_suite::extension_def(Class&) [with Class = boost::python::class_, RDKit::MolStandardize::Tautomer>, boost::noncopyable_::noncopyable>; Container = std::map, RDKit::MolStandardize::Tautomer>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_map_derived_policies, RDKit::MolStandardize::Tautomer>, true>]’: /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:76:34: note: ‘class_name_extractor’ declared here 76 | extract class_name_extractor(class_name); | ^~~~~~~~~~~~~~~~~~~~ [ 81%] Linking CXX executable moldraw2DRxnTest1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/moldraw2DRxnTest1.dir/link.d CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1 ../../../lib/libRDKitMolDraw2D.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcairo.so /usr/lib/powerpc64le-linux-gnu/libfreetype.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target moldraw2DRxnTest1 make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Test /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Test /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake "--color=" FMCStest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o -MF CMakeFiles/FMCStest.dir/testFMCS.cpp.o.d -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Test/testFMCS.cpp In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:34, inlined from ‘static boost::python::map_indexing_suite::index_type boost::python::map_indexing_suite::convert_index(Container&, PyObject*) [with Container = std::map, RDKit::MolStandardize::Tautomer>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_map_derived_policies, RDKit::MolStandardize::Tautomer>, true>]’ at /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:170:30: /usr/include/c++/15/bits/basic_string.h:239:28: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)&i + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p’ may be used uninitialized [-Wmaybe-uninitialized] 239 | { return _M_dataplus._M_p; } | ^~~~ /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp: In function ‘static boost::python::map_indexing_suite::index_type boost::python::map_indexing_suite::convert_index(Container&, PyObject*) [with Container = std::map, RDKit::MolStandardize::Tautomer>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_map_derived_policies, RDKit::MolStandardize::Tautomer>, true>]’: /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:168:35: note: ‘i’ declared here 168 | extract i(i_); | ^ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1176:20, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:20, inlined from ‘static boost::python::map_indexing_suite::index_type boost::python::map_indexing_suite::convert_index(Container&, PyObject*) [with Container = std::map, RDKit::MolStandardize::Tautomer>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_map_derived_policies, RDKit::MolStandardize::Tautomer>, true>]’ at /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:170:30: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)&i + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_string_length’ may be used uninitialized [-Wmaybe-uninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp: In function ‘static boost::python::map_indexing_suite::index_type boost::python::map_indexing_suite::convert_index(Container&, PyObject*) [with Container = std::map, RDKit::MolStandardize::Tautomer>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_map_derived_policies, RDKit::MolStandardize::Tautomer>, true>]’: /usr/include/boost/python/suite/indexing/map_indexing_suite.hpp:168:35: note: ‘i’ declared here 168 | extract i(i_); | ^ In file included from /usr/include/boost/python/override.hpp:13, from /usr/include/boost/python/wrapper.hpp:8, from /usr/include/boost/python/object/value_holder.hpp:15, from /usr/include/boost/python/object/class_metadata.hpp:14, from /usr/include/boost/python/class.hpp:23: In member function ‘boost::python::converter::extract_rvalue::result_type boost::python::converter::extract_rvalue::operator()() const [with T = long int]’, inlined from ‘boost::python::extract::operator result_type() const [with T = long int]’ at /usr/include/boost/python/extract.hpp:136:23, inlined from ‘static void boost::python::detail::slice_helper::base_get_slice_data(Container&, PySliceObject*, Index&, Index&) [with Container = std::vector; DerivedPolicies = boost::python::detail::final_vector_derived_policies, false>; ProxyHandler = boost::python::detail::proxy_helper, boost::python::detail::final_vector_derived_policies, false>, boost::python::detail::container_element, long unsigned int, boost::python::detail::final_vector_derived_policies, false> >, long unsigned int>; Data = RDKit::MolStandardize::TautomerScoringFunctions::SubstructTerm; Index = long unsigned int]’ at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:617:27: /usr/include/boost/python/extract.hpp:185:11: warning: ‘*(long int*)((char*)& + offsetof(boost::python::extract,boost::python::extract::.boost::python::converter::extract_rvalue::m_data.boost::python::converter::rvalue_from_python_data::.boost::python::converter::rvalue_from_python_storage::storage))’ may be used uninitialized [-Wmaybe-uninitialized] 185 | ); | ^ In file included from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12: /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp: In static member function ‘static void boost::python::detail::slice_helper::base_get_slice_data(Container&, PySliceObject*, Index&, Index&) [with Container = std::vector; DerivedPolicies = boost::python::detail::final_vector_derived_policies, false>; ProxyHandler = boost::python::detail::proxy_helper, boost::python::detail::final_vector_derived_policies, false>, boost::python::detail::container_element, long unsigned int, boost::python::detail::final_vector_derived_policies, false> >, long unsigned int>; Data = RDKit::MolStandardize::TautomerScoringFunctions::SubstructTerm; Index = long unsigned int]’: /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:617:27: note: ‘’ declared here 617 | long to = extract( slice->stop); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘boost::python::converter::extract_rvalue::result_type boost::python::converter::extract_rvalue::operator()() const [with T = long int]’, inlined from ‘boost::python::extract::operator result_type() const [with T = long int]’ at /usr/include/boost/python/extract.hpp:136:23, inlined from ‘static void boost::python::detail::slice_helper::base_get_slice_data(Container&, PySliceObject*, Index&, Index&) [with Container = std::vector; DerivedPolicies = boost::python::detail::final_vector_derived_policies, false>; ProxyHandler = boost::python::detail::proxy_helper, boost::python::detail::final_vector_derived_policies, false>, boost::python::detail::container_element, long unsigned int, boost::python::detail::final_vector_derived_policies, false> >, long unsigned int>; Data = RDKit::MolStandardize::TautomerScoringFunctions::SubstructTerm; Index = long unsigned int]’ at /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:603:29: /usr/include/boost/python/extract.hpp:185:11: warning: ‘*(long int*)((char*)& + offsetof(boost::python::extract,boost::python::extract::.boost::python::converter::extract_rvalue::m_data.boost::python::converter::rvalue_from_python_data::.boost::python::converter::rvalue_from_python_storage::storage))’ may be used uninitialized [-Wmaybe-uninitialized] 185 | ); | ^ /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp: In static member function ‘static void boost::python::detail::slice_helper::base_get_slice_data(Container&, PySliceObject*, Index&, Index&) [with Container = std::vector; DerivedPolicies = boost::python::detail::final_vector_derived_policies, false>; ProxyHandler = boost::python::detail::proxy_helper, boost::python::detail::final_vector_derived_policies, false>, boost::python::detail::container_element, long unsigned int, boost::python::detail::final_vector_derived_policies, false> >, long unsigned int>; Data = RDKit::MolStandardize::TautomerScoringFunctions::SubstructTerm; Index = long unsigned int]’: /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:603:29: note: ‘’ declared here 603 | long from = extract( slice->start); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolStandardize.dir/link.d -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o CMakeFiles/rdMolStandardize.dir/Pipeline.cpp.o ../../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target rdMolStandardize make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake "--color=" testMMPA make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -MF CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o.d -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA/MMPA_UnitTest.cpp [ 81%] Linking CXX executable FMCStest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/FMCStest.dir/link.d CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest ../../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target FMCStest make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake "--color=" rdMMPA make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -MF CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o.d -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp [ 81%] Linking CXX executable testMMPA cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMMPA.dir/link.d CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA ../../../lib/libRDKitMMPA.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target testMMPA make -f Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/build.make Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/DependInfo.cmake "--color=" testRascalMCES make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/build.make Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o -MF CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o.d -o CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/mces_catch.cpp [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdFMCS.dir/link.d -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target rdFMCS make -f Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/build.make Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/DependInfo.cmake "--color=" testRascalCluster make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/build.make Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o -MF CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o.d -o CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/mces_cluster_catch.cpp [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMMPA.dir/link.d -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libRDKitMMPA.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target rdMMPA make -f Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/build.make Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/DependInfo.cmake "--color=" rdRascalMCES make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/build.make Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRascalMCES_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o -MF CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o.d -o CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/Wrap/rdRascalMCES.cpp [ 81%] Linking CXX executable moldraw2DTest1 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/moldraw2DTest1.dir/link.d CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 ../../../lib/libRDKitMolDraw2D.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcairo.so /usr/lib/powerpc64le-linux-gnu/libfreetype.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target moldraw2DTest1 make -f Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/build.make Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/DependInfo.cmake "--color=" GeneralizedSubstruct make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/build.make Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGeneralizedSubstruct_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERALIZEDSUBSTRUCT_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o -MF CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o.d -o CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct/XQMol.cpp [ 81%] Linking CXX executable testFMCS cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testFMCS.dir/link.d CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS ../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target testFMCS make -f Code/GraphMol/EnumerateStereoisomers/CMakeFiles/testEnumerateStereoisomers.dir/build.make Code/GraphMol/EnumerateStereoisomers/CMakeFiles/testEnumerateStereoisomers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers/CMakeFiles/testEnumerateStereoisomers.dir/DependInfo.cmake "--color=" testEnumerateStereoisomers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/EnumerateStereoisomers/CMakeFiles/testEnumerateStereoisomers.dir/build.make Code/GraphMol/EnumerateStereoisomers/CMakeFiles/testEnumerateStereoisomers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/EnumerateStereoisomers/CMakeFiles/testEnumerateStereoisomers.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/EnumerateStereoisomers/CMakeFiles/testEnumerateStereoisomers.dir/catch_tests.cpp.o -MF CMakeFiles/testEnumerateStereoisomers.dir/catch_tests.cpp.o.d -o CMakeFiles/testEnumerateStereoisomers.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers/catch_tests.cpp [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolDescriptors.dir/link.d -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target rdMolDescriptors make -f Code/GraphMol/EnumerateStereoisomers/Wrap/CMakeFiles/rdEnumerateStereoisomers.dir/build.make Code/GraphMol/EnumerateStereoisomers/Wrap/CMakeFiles/rdEnumerateStereoisomers.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers/Wrap/CMakeFiles/rdEnumerateStereoisomers.dir/DependInfo.cmake "--color=" rdEnumerateStereoisomers make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/EnumerateStereoisomers/Wrap/CMakeFiles/rdEnumerateStereoisomers.dir/build.make Code/GraphMol/EnumerateStereoisomers/Wrap/CMakeFiles/rdEnumerateStereoisomers.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/EnumerateStereoisomers/Wrap/CMakeFiles/rdEnumerateStereoisomers.dir/rdEnumerateStereoisomers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdEnumerateStereoisomers_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/EnumerateStereoisomers/Wrap/CMakeFiles/rdEnumerateStereoisomers.dir/rdEnumerateStereoisomers.cpp.o -MF CMakeFiles/rdEnumerateStereoisomers.dir/rdEnumerateStereoisomers.cpp.o.d -o CMakeFiles/rdEnumerateStereoisomers.dir/rdEnumerateStereoisomers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers/Wrap/rdEnumerateStereoisomers.cpp [ 81%] Linking CXX executable testRascalCluster cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRascalCluster.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testRascalCluster.dir/link.d CMakeFiles/testRascalCluster.dir/mces_cluster_catch.cpp.o -o testRascalCluster ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitRascalMCES.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target testRascalCluster make -f Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/DependInfo.cmake "--color=" testCIPLabeler make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o -MF CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/catch_tests.cpp [ 81%] Building CXX object Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DGeneralizedSubstruct_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERALIZEDSUBSTRUCT_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o -MF CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o.d -o CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct/TextIO.cpp [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdRascalMCES.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRascalMCES.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdRascalMCES.dir/link.d -o ../../../../rdkit/Chem/rdRascalMCES.so CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o ../../../../lib/libRDKitRascalMCES.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target rdRascalMCES make -f Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/DependInfo.cmake "--color=" deprotectTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/Deprotect/CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o -MF CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o.d -o CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect/deprotectTest.cpp [ 81%] Linking CXX executable testRascalMCES cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRascalMCES.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testRascalMCES.dir/link.d CMakeFiles/testRascalMCES.dir/mces_catch.cpp.o -o testRascalMCES ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitRascalMCES.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target testRascalMCES make -f Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build.make Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DependInfo.cmake "--color=" rdDeprotect make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build.make Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDeprotect_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o -MF CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o.d -o CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect/Wrap/rdDeprotect.cpp [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdEnumerateStereoisomers.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdEnumerateStereoisomers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdEnumerateStereoisomers.dir/link.d -o ../../../../rdkit/Chem/rdEnumerateStereoisomers.so CMakeFiles/rdEnumerateStereoisomers.dir/rdEnumerateStereoisomers.cpp.o ../../../../lib/libRDKitEnumerateStereoisomers.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Built target rdEnumerateStereoisomers make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake "--color=" RGroupDecomposition make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 81%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp [ 82%] Linking CXX executable testEnumerateStereoisomers cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumerateStereoisomers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testEnumerateStereoisomers.dir/link.d CMakeFiles/testEnumerateStereoisomers.dir/catch_tests.cpp.o -o testEnumerateStereoisomers ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitEnumerateStereoisomers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 82%] Built target testEnumerateStereoisomers make -f Code/GraphMol/DetermineBonds/CMakeFiles/determineBondsCatchTest.dir/build.make Code/GraphMol/DetermineBonds/CMakeFiles/determineBondsCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DetermineBonds /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds/CMakeFiles/determineBondsCatchTest.dir/DependInfo.cmake "--color=" determineBondsCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/DetermineBonds/CMakeFiles/determineBondsCatchTest.dir/build.make Code/GraphMol/DetermineBonds/CMakeFiles/determineBondsCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 82%] Building CXX object Code/GraphMol/DetermineBonds/CMakeFiles/determineBondsCatchTest.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/DetermineBonds/CMakeFiles/determineBondsCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/determineBondsCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/determineBondsCatchTest.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DetermineBonds/catch_tests.cpp [ 82%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolDraw2D.dir/link.d -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcairo.so /usr/lib/powerpc64le-linux-gnu/libfreetype.so /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 82%] Built target rdMolDraw2D make -f Code/GraphMol/DetermineBonds/Wrap/CMakeFiles/rdDetermineBonds.dir/build.make Code/GraphMol/DetermineBonds/Wrap/CMakeFiles/rdDetermineBonds.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DetermineBonds/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds/Wrap/CMakeFiles/rdDetermineBonds.dir/DependInfo.cmake "--color=" rdDetermineBonds make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/DetermineBonds/Wrap/CMakeFiles/rdDetermineBonds.dir/build.make Code/GraphMol/DetermineBonds/Wrap/CMakeFiles/rdDetermineBonds.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 82%] Building CXX object Code/GraphMol/DetermineBonds/Wrap/CMakeFiles/rdDetermineBonds.dir/rdDetermineBonds.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDetermineBonds_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/DetermineBonds/Wrap/CMakeFiles/rdDetermineBonds.dir/rdDetermineBonds.cpp.o -MF CMakeFiles/rdDetermineBonds.dir/rdDetermineBonds.cpp.o.d -o CMakeFiles/rdDetermineBonds.dir/rdDetermineBonds.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DetermineBonds/Wrap/rdDetermineBonds.cpp [ 82%] Building CXX object Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDeprotect_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -MF CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o.d -o CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect/Wrap/DeprotectWrap.cpp [ 82%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o -MF CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/CIPMol.cpp [ 82%] Linking CXX executable deprotectTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect && /usr/bin/cmake -E cmake_link_script CMakeFiles/deprotectTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/deprotectTest.dir/link.d CMakeFiles/deprotectTest.dir/deprotectTest.cpp.o -o deprotectTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitDeprotect.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 82%] Built target deprotectTest make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake "--color=" rdchem make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 82%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o -MF CMakeFiles/rdchem.dir/rdchem.cpp.o.d -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdchem.cpp [ 82%] Linking CXX shared library ../../../lib/libRDKitGeneralizedSubstruct.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/GeneralizedSubstruct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/GeneralizedSubstruct.dir/link.d -Wl,-soname,libRDKitGeneralizedSubstruct.so.1 -o ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../lib/libRDKitGeneralizedSubstruct.so.1 ../../../lib/libRDKitGeneralizedSubstruct.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 82%] Built target GeneralizedSubstruct make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake "--color=" rdmolfiles make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 82%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -MF CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o.d -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdmolfiles.cpp [ 83%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o -MF CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/CIPLabeler.cpp [ 83%] Linking CXX shared module ../../../../rdkit/Chem/rdDetermineBonds.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDetermineBonds.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdDetermineBonds.dir/link.d -o ../../../../rdkit/Chem/rdDetermineBonds.so CMakeFiles/rdDetermineBonds.dir/rdDetermineBonds.cpp.o ../../../../lib/libRDKitDetermineBonds.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 83%] Built target rdDetermineBonds make -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/DependInfo.cmake "--color=" testScaffoldNetwork make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 83%] Building CXX object Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -MF CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o.d -o CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork/catch_tests.cpp [ 83%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecompData.cpp [ 83%] Linking CXX executable determineBondsCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds && /usr/bin/cmake -E cmake_link_script CMakeFiles/determineBondsCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/determineBondsCatchTest.dir/link.d CMakeFiles/determineBondsCatchTest.dir/catch_tests.cpp.o -o determineBondsCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitDetermineBonds.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 83%] Built target determineBondsCatchTest make -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/DependInfo.cmake "--color=" rdScaffoldNetwork make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 84%] Building CXX object Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdScaffoldNetwork_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -MF CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o.d -o CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork/Wrap/rdScaffoldNetwork.cpp [ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdDeprotect.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDeprotect.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdDeprotect.dir/link.d -o ../../../../rdkit/Chem/rdDeprotect.so CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o ../../../../lib/libRDKitDeprotect.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 84%] Built target rdDeprotect make -f Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/build.make Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/DependInfo.cmake "--color=" generalizedSubstructCatch [ 84%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o -MF CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Mancude.cpp make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/build.make Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 84%] Building CXX object Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/GeneralizedSubstruct/CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o -MF CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct/catch_tests.cpp [ 84%] Linking CXX executable moldraw2DTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/moldraw2DTestCatch.dir/link.d CMakeFiles/moldraw2DTestCatch.dir/catch_tests.cpp.o -o moldraw2DTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolDraw2D.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libcairo.so /usr/lib/powerpc64le-linux-gnu/libfreetype.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 84%] Built target moldraw2DTestCatch make -f Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/build.make Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/DependInfo.cmake "--color=" rdGeneralizedSubstruct make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/build.make Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 85%] Building CXX object Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeneralizedSubstruct_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o -MF CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o.d -o CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct/Wrap/rdGeneralizedSubstruct.cpp In file included from /usr/include/c++/15/string:56, from /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Invariant.h:17, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RDKitBase.h:21, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdchem.cpp:13: In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:34, inlined from ‘PyObject* createExceptionClass(const char*, PyObject*)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdchem.cpp:80:68: /usr/include/c++/15/bits/basic_string.h:239:28: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p’ may be used uninitialized [-Wmaybe-uninitialized] 239 | { return _M_dataplus._M_p; } | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdchem.cpp: In function ‘PyObject* createExceptionClass(const char*, PyObject*)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdchem.cpp:80:68: note: ‘’ declared here 80 | python::extract(python::scope().attr("__name__")); | ^ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1176:20, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:20, inlined from ‘PyObject* createExceptionClass(const char*, PyObject*)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdchem.cpp:80:68: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_string_length’ may be used uninitialized [-Wmaybe-uninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdchem.cpp: In function ‘PyObject* createExceptionClass(const char*, PyObject*)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rdchem.cpp:80:68: note: ‘’ declared here 80 | python::extract(python::scope().attr("__name__")); | ^ [ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o -MF CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Digraph.cpp [ 85%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Node.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Node.cpp.o -MF CMakeFiles/testCIPLabeler.dir/Node.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/Node.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Node.cpp [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o -MF CMakeFiles/rdchem.dir/Table.cpp.o.d -o CMakeFiles/rdchem.dir/Table.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/Table.cpp [ 85%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupData.cpp [ 85%] Linking CXX executable testScaffoldNetwork cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork && /usr/bin/cmake -E cmake_link_script CMakeFiles/testScaffoldNetwork.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testScaffoldNetwork.dir/link.d CMakeFiles/testScaffoldNetwork.dir/catch_tests.cpp.o -o testScaffoldNetwork ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitScaffoldNetwork.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 85%] Built target testScaffoldNetwork [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o -MF CMakeFiles/rdchem.dir/Atom.cpp.o.d -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/Atom.cpp [ 85%] Linking CXX executable generalizedSubstructCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/generalizedSubstructCatch.dir/link.txt --verbose=1 [ 85%] Linking CXX shared module ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdScaffoldNetwork.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/generalizedSubstructCatch.dir/link.d CMakeFiles/generalizedSubstructCatch.dir/catch_tests.cpp.o -o generalizedSubstructCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 85%] Built target generalizedSubstructCatch make -f Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/build.make Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProcessing /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/DependInfo.cmake "--color=" testMolProcessing make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/build.make Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 86%] Building CXX object Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolProcessing/CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o -MF CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o.d -o CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProcessing/processing_tests.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdScaffoldNetwork.dir/link.d -o ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o ../../../../lib/libRDKitScaffoldNetwork.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Edge.cpp.o [ 86%] Built target rdScaffoldNetwork make -f Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/build.make Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/depend cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Edge.cpp.o -MF CMakeFiles/testCIPLabeler.dir/Edge.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/Edge.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Edge.cpp make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProcessing/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/DependInfo.cmake "--color=" rdMolProcessing make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/build.make Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 86%] Building CXX object Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolProcessing_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolProcessing/Wrap/CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o -MF CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o.d -o CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProcessing/Wrap/rdMolProcessing.cpp [ 86%] Linking CXX shared module ../../../../rdkit/Chem/rdGeneralizedSubstruct.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeneralizedSubstruct.dir/link.txt --verbose=1 [ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Sort.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/Sort.cpp.o -MF CMakeFiles/testCIPLabeler.dir/Sort.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/Sort.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Sort.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdGeneralizedSubstruct.dir/link.d -o ../../../../rdkit/Chem/rdGeneralizedSubstruct.so CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o ../../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 86%] Built target rdGeneralizedSubstruct make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake "--color=" rdkit make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 86%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o -MF CMakeFiles/rdkit.dir/adapter.cpp.o.d -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/adapter.cpp [ 86%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Configuration.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Configuration.cpp.o -MF CMakeFiles/testCIPLabeler.dir/configs/Configuration.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/configs/Configuration.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Configuration.cpp /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/adapter.cpp: In function ‘void* makeAvalonBFP(CROMol, bool, unsigned int)’: /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/adapter.cpp:1637:38: warning: unused parameter ‘data’ [-Wunused-parameter] 1637 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery, | ~~~~~~~^~~~ /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/adapter.cpp:1637:49: warning: unused parameter ‘isQuery’ [-Wunused-parameter] 1637 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery, | ~~~~~^~~~~~~ /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/adapter.cpp:1638:44: warning: unused parameter ‘bitFlags’ [-Wunused-parameter] 1638 | unsigned int bitFlags) { | ~~~~~~~~~~~~~^~~~~~~~ [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o -MF CMakeFiles/rdchem.dir/Bond.cpp.o.d -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/Bond.cpp [ 86%] Linking CXX executable testMolProcessing cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolProcessing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMolProcessing.dir/link.d CMakeFiles/testMolProcessing.dir/processing_tests.cpp.o -o testMolProcessing ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMolProcessing.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDStreams.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 86%] Built target testMolProcessing make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake "--color=" cxsmilesTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 87%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -MF CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o.d -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/cxsmiles_test.cpp [ 87%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o -MF CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp [ 87%] Linking CXX shared module ../../../../rdkit/Chem/rdMolProcessing.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolProcessing.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolProcessing.dir/link.d -o ../../../../rdkit/Chem/rdMolProcessing.so CMakeFiles/rdMolProcessing.dir/rdMolProcessing.cpp.o ../../../../lib/libRDKitMolProcessing.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitRDStreams.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 87%] Built target rdMolProcessing make -f Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/build.make Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/DependInfo.cmake "--color=" testMrvToMol make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/build.make Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 87%] Building CXX object Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/testMrvToMol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MarvinParse/CMakeFiles/testMrvToMol.dir/testMrvToMol.cpp.o -MF CMakeFiles/testMrvToMol.dir/testMrvToMol.cpp.o.d -o CMakeFiles/testMrvToMol.dir/testMrvToMol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse/testMrvToMol.cpp [ 87%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o -MF CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp [ 87%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupUtils.cpp [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp [ 87%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o -MF CMakeFiles/rdkit.dir/bfp_op.c.o.d -o CMakeFiles/rdkit.dir/bfp_op.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/bfp_op.c [ 87%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o -MF CMakeFiles/rdkit.dir/cache.c.o.d -o CMakeFiles/rdkit.dir/cache.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/cache.c [ 87%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o -MF CMakeFiles/rdkit.dir/guc.c.o.d -o CMakeFiles/rdkit.dir/guc.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/guc.c [ 87%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o -MF CMakeFiles/rdkit.dir/low_gist.c.o.d -o CMakeFiles/rdkit.dir/low_gist.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/low_gist.c [ 87%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/AtropisomerBond.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/configs/AtropisomerBond.cpp.o -MF CMakeFiles/testCIPLabeler.dir/configs/AtropisomerBond.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/configs/AtropisomerBond.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/AtropisomerBond.cpp [ 87%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o -MF CMakeFiles/rdkit.dir/mol_op.c.o.d -o CMakeFiles/rdkit.dir/mol_op.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/mol_op.c [ 87%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o -MF CMakeFiles/rdkit.dir/rdkit_gist.c.o.d -o CMakeFiles/rdkit.dir/rdkit_gist.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/rdkit_gist.c [ 87%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o -MF CMakeFiles/rdkit.dir/bfp_gist.c.o.d -o CMakeFiles/rdkit.dir/bfp_gist.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/bfp_gist.c [ 87%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o -MF CMakeFiles/rdkit.dir/bfp_gin.c.o.d -o CMakeFiles/rdkit.dir/bfp_gin.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/bfp_gin.c [ 88%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o -MF CMakeFiles/rdkit.dir/bitstring.c.o.d -o CMakeFiles/rdkit.dir/bitstring.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/bitstring.c [ 88%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o -MF CMakeFiles/rdkit.dir/rdkit_io.c.o.d -o CMakeFiles/rdkit.dir/rdkit_io.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/rdkit_io.c [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o -MF CMakeFiles/rdchem.dir/Mol.cpp.o.d -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/Mol.cpp [ 89%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o -MF CMakeFiles/rdkit.dir/rxn_op.c.o.d -o CMakeFiles/rdkit.dir/rxn_op.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/rxn_op.c [ 89%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKITVER=\"007600\" -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_CAIRO_SUPPORT -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_INCHI_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_MOLINTERCHANGE_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_TOOLKIT_VERSION=\"2025.03.6\" -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/include/freetype2 -isystem /usr/include/eigen3 -isystem /usr/include/cairo -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -std=gnu99 -fPIC -MD -MT Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o -MF CMakeFiles/rdkit.dir/sfp_op.c.o.d -o CMakeFiles/rdkit.dir/sfp_op.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/sfp_op.c [ 89%] Linking CXX shared library librdkit.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rdkit.dir/link.d -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o -L/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/lib /usr/lib/powerpc64le-linux-gnu/libpq.so ../../../lib/libRDKitRDInchiLib.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libinchi.so ../../../lib/libRDKitMolInterchange.so.1.2025.03.6 ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolDraw2D.so.1.2025.03.6 ../../../lib/libRDKitMolHash.so.1.2025.03.6 ../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcairo.so /usr/lib/powerpc64le-linux-gnu/libfreetype.so ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/sql /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit/sql cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/data /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit/data cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/expected /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/PgSQL/rdkit/expected make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 89%] Built target rdkit make -f Code/GraphMol/GenericGroups/CMakeFiles/testGenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/testGenericGroups.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GenericGroups /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups/CMakeFiles/testGenericGroups.dir/DependInfo.cmake "--color=" testGenericGroups make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/GenericGroups/CMakeFiles/testGenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/testGenericGroups.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 89%] Building CXX object Code/GraphMol/GenericGroups/CMakeFiles/testGenericGroups.dir/generic_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/GenericGroups/CMakeFiles/testGenericGroups.dir/generic_tests.cpp.o -MF CMakeFiles/testGenericGroups.dir/generic_tests.cpp.o.d -o CMakeFiles/testGenericGroups.dir/generic_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GenericGroups/generic_tests.cpp [ 90%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp [ 90%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp [ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o -MF CMakeFiles/rdchem.dir/Conformer.cpp.o.d -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/Conformer.cpp [ 90%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupCore.cpp [ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/MaeMolSupplier.cpp [ 90%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule2.cpp [ 90%] Linking CXX executable testMrvToMol cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMrvToMol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testMrvToMol.dir/link.d CMakeFiles/testMrvToMol.dir/testMrvToMol.cpp.o -o testMrvToMol ../../../lib/libRDKitMarvinParser.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 90%] Built target testMrvToMol [ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/MaeWriter.cpp [ 91%] Linking CXX executable cxsmilesTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/cxsmilesTest.dir/link.d CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMarvinParser.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 91%] Built target cxsmilesTest make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake "--color=" rdChemReactions make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 91%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -MF CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o.d -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp [ 91%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule3.cpp [ 91%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp [ 91%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp [ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/SDMolSupplier.cpp [ 91%] Linking CXX executable testGenericGroups cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGenericGroups.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testGenericGroups.dir/link.d CMakeFiles/testGenericGroups.dir/generic_tests.cpp.o -o testGenericGroups ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMarvinParser.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 91%] Built target testGenericGroups [ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/TDTMolSupplier.cpp [ 91%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp [ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/SmilesMolSupplier.cpp [ 91%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule5.cpp [ 91%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.cpp [ 91%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp [ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o -MF CMakeFiles/rdchem.dir/RingInfo.cpp.o.d -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/RingInfo.cpp [ 91%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule6.cpp [ 92%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o -MF CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o.d -o CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/SequenceRule.cpp [ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/SmilesWriter.cpp [ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/SDWriter.cpp [ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o -MF CMakeFiles/rdchem.dir/EditableMol.cpp.o.d -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/EditableMol.cpp [ 92%] Linking CXX executable testCIPLabeler cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCIPLabeler.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testCIPLabeler.dir/link.d CMakeFiles/testCIPLabeler.dir/catch_tests.cpp.o CMakeFiles/testCIPLabeler.dir/CIPMol.cpp.o CMakeFiles/testCIPLabeler.dir/CIPLabeler.cpp.o CMakeFiles/testCIPLabeler.dir/Mancude.cpp.o CMakeFiles/testCIPLabeler.dir/Digraph.cpp.o CMakeFiles/testCIPLabeler.dir/Node.cpp.o CMakeFiles/testCIPLabeler.dir/Edge.cpp.o CMakeFiles/testCIPLabeler.dir/Sort.cpp.o CMakeFiles/testCIPLabeler.dir/configs/Configuration.cpp.o CMakeFiles/testCIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/testCIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/testCIPLabeler.dir/configs/AtropisomerBond.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/testCIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/testCIPLabeler.dir/rules/SequenceRule.cpp.o -o testCIPLabeler ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitMarvinParser.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 92%] Built target testCIPLabeler make -f Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/TautomerQuery /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/DependInfo.cmake "--color=" tautomerQueryTestCatch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 92%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -MF CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o.d -o CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/TautomerQuery/catch_tests.cpp [ 92%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupScore.cpp [ 92%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -MF CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o.d -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp [ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -MF CMakeFiles/rdchem.dir/MonomerInfo.cpp.o.d -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/MonomerInfo.cpp [ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/TDTWriter.cpp [ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/PDBWriter.cpp [ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -MF CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o.d -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp [ 93%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupFingerprintScore.cpp [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o -MF CMakeFiles/rdchem.dir/MolBundle.cpp.o.d -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/MolBundle.cpp [ 93%] Linking CXX executable tautomerQueryTestCatch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery && /usr/bin/cmake -E cmake_link_script CMakeFiles/tautomerQueryTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tautomerQueryTestCatch.dir/link.d CMakeFiles/tautomerQueryTestCatch.dir/catch_tests.cpp.o -o tautomerQueryTestCatch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 93%] Built target tautomerQueryTestCatch make -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/TautomerQuery/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/DependInfo.cmake "--color=" rdTautomerQuery make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 93%] Building CXX object Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdTautomerQuery_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -MF CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o.d -o CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/TautomerQuery/Wrap/rdTautomerQuery.cpp [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o -MF CMakeFiles/rdchem.dir/StereoGroup.cpp.o.d -o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/StereoGroup.cpp [ 93%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupGa.cpp [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/MultithreadedSmilesMolSupplier.cpp [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/MultithreadedSDMolSupplier.cpp [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -MF CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o.d -o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/SubstanceGroup.cpp [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o -MF CMakeFiles/rdchem.dir/Chirality.cpp.o.d -o CMakeFiles/rdchem.dir/Chirality.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/Chirality.cpp In file included from /usr/include/c++/15/string:56, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/rdkit-202503.6/Code/Geometry/point.h:14, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolPickler.h:14, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:34: In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:34, inlined from ‘boost::python::api::object RDKit::addReactionToPNGFileHelper(const ChemicalReaction&, boost::python::api::object, bool, bool, bool, bool)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:508:56: /usr/include/c++/15/bits/basic_string.h:239:28: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p’ may be used uninitialized [-Wmaybe-uninitialized] 239 | { return _M_dataplus._M_p; } | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘boost::python::api::object RDKit::addReactionToPNGFileHelper(const ChemicalReaction&, boost::python::api::object, bool, bool, bool, bool)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:508:56: note: ‘’ declared here 508 | std::string cstr = python::extract(fname); | ^ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1176:20, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:20, inlined from ‘boost::python::api::object RDKit::addReactionToPNGFileHelper(const ChemicalReaction&, boost::python::api::object, bool, bool, bool, bool)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:508:56: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_string_length’ may be used uninitialized [-Wmaybe-uninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘boost::python::api::object RDKit::addReactionToPNGFileHelper(const ChemicalReaction&, boost::python::api::object, bool, bool, bool, bool)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:508:56: note: ‘’ declared here 508 | std::string cstr = python::extract(fname); | ^ [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdTautomerQuery.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdTautomerQuery.dir/link.txt --verbose=1 In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:34, inlined from ‘boost::python::api::object RDKit::addReactionToPNGStringHelper(const ChemicalReaction&, boost::python::api::object, bool, bool, bool, bool)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:495:54: /usr/include/c++/15/bits/basic_string.h:239:28: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p’ may be used uninitialized [-Wmaybe-uninitialized] 239 | { return _M_dataplus._M_p; } | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘boost::python::api::object RDKit::addReactionToPNGStringHelper(const ChemicalReaction&, boost::python::api::object, bool, bool, bool, bool)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:495:54: note: ‘’ declared here 495 | std::string cstr = python::extract(png); | ^ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1176:20, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:20, inlined from ‘boost::python::api::object RDKit::addReactionToPNGStringHelper(const ChemicalReaction&, boost::python::api::object, bool, bool, bool, bool)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:495:54: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_string_length’ may be used uninitialized [-Wmaybe-uninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘boost::python::api::object RDKit::addReactionToPNGStringHelper(const ChemicalReaction&, boost::python::api::object, bool, bool, bool, bool)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:495:54: note: ‘’ declared here 495 | std::string cstr = python::extract(png); | ^ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:34, inlined from ‘std::string RDKit::pyObjectToString(boost::python::api::object)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:74:15: /usr/include/c++/15/bits/basic_string.h:239:28: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)&ex + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p’ may be used uninitialized [-Wmaybe-uninitialized] 239 | { return _M_dataplus._M_p; } | ^~~~ /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdTautomerQuery.dir/link.d -o ../../../../rdkit/Chem/rdTautomerQuery.so CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o ../../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘std::string RDKit::pyObjectToString(boost::python::api::object)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:72:32: note: ‘ex’ declared here 72 | python::extract ex(input); | ^~ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1176:20, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:20, inlined from ‘std::string RDKit::pyObjectToString(boost::python::api::object)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:74:15: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)&ex + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_string_length’ may be used uninitialized [-Wmaybe-uninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘std::string RDKit::pyObjectToString(boost::python::api::object)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:72:32: note: ‘ex’ declared here 72 | python::extract ex(input); | ^~ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = wchar_t; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = wchar_t; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:34, inlined from ‘std::string RDKit::pyObjectToString(boost::python::api::object)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:76:56: /usr/include/c++/15/bits/basic_string.h:239:28: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p’ may be used uninitialized [-Wmaybe-uninitialized] 239 | { return _M_dataplus._M_p; } | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘std::string RDKit::pyObjectToString(boost::python::api::object)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:76:56: note: ‘’ declared here 76 | std::wstring ws = python::extract(input); | ^ make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = wchar_t; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = wchar_t; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1176:20, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = wchar_t; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:20, inlined from ‘std::string RDKit::pyObjectToString(boost::python::api::object)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:76:56: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_string_length’ may be used uninitialized [-Wmaybe-uninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘std::string RDKit::pyObjectToString(boost::python::api::object)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:76:56: note: ‘’ declared here 76 | std::wstring ws = python::extract(input); | ^ [ 93%] Built target rdTautomerQuery make -f Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/DependInfo.cmake "--color=" testO3AAlign make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/MolAlign/CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -MF CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o.d -o CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/testO3AAlign.cpp [ 93%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompJSONParsers.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompJSONParsers.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupDecompJSONParsers.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecompJSONParsers.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecompJSONParsers.cpp make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake "--color=" rdMolAlign make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -MF CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o.d -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp [ 94%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdmolfiles.dir/link.d -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o ../../../lib/libRDKitMarvinParser.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 -ldl /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 94%] Built target rdmolfiles make -f Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/build.make Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/DependInfo.cmake "--color=" SynthonSpaceSearch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/build.make Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 94%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearch_details.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearch_details.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearch_details.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearch_details.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceSearch_details.cpp In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/string:53, from /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Invariant.h:17, from /build/reproducible-path/rdkit-202503.6/Code/Numerics/Matrix.h:14, from /build/reproducible-path/rdkit-202503.6/Code/Numerics/SquareMatrix.h:14, from /build/reproducible-path/rdkit-202503.6/Code/Geometry/Transform3D.h:16, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/AlignMolecules.h:14, from /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/testO3AAlign.cpp:11: /usr/include/c++/15/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/testO3AAlign.cpp:643:37: required from here 643 | oscores.push_back(std::make_pair(rmsd, score)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 1164 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 94%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpace.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpace.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/SynthonSpace.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpace.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpace.cpp make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake "--color=" SubstructLibrary make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 94%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -MF CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:34, inlined from ‘boost::python::api::object RDKit::PreprocessReaction(ChemicalReaction&, boost::python::dict, std::string)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:443:71: /usr/include/c++/15/bits/basic_string.h:239:28: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p’ may be used uninitialized [-Wmaybe-uninitialized] 239 | { return _M_dataplus._M_p; } | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘boost::python::api::object RDKit::PreprocessReaction(ChemicalReaction&, boost::python::dict, std::string)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:443:71: note: ‘’ declared here 443 | std::string k = python::extract(queryDict.keys()[i]); | ^ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1176:20, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:20, inlined from ‘boost::python::api::object RDKit::PreprocessReaction(ChemicalReaction&, boost::python::dict, std::string)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:443:71: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_string_length’ may be used uninitialized [-Wmaybe-uninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘boost::python::api::object RDKit::PreprocessReaction(ChemicalReaction&, boost::python::dict, std::string)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:443:71: note: ‘’ declared here 443 | std::string k = python::extract(queryDict.keys()[i]); | ^ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:34, inlined from ‘boost::python::api::object RDKit::AddRecursiveQueriesToReaction(ChemicalReaction&, boost::python::dict, std::string, bool)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:402:69: /usr/include/c++/15/bits/basic_string.h:239:28: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p’ may be used uninitialized [-Wmaybe-uninitialized] 239 | { return _M_dataplus._M_p; } | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘boost::python::api::object RDKit::AddRecursiveQueriesToReaction(ChemicalReaction&, boost::python::dict, std::string, bool)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:402:69: note: ‘’ declared here 402 | std::string k = python::extract(queryDict.keys()[i]); | ^ In member function ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:1176:20, inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/basic_string.h:617:20, inlined from ‘boost::python::api::object RDKit::AddRecursiveQueriesToReaction(ChemicalReaction&, boost::python::dict, std::string, bool)’ at /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:402:69: /usr/include/c++/15/bits/basic_string.h:1165:19: warning: ‘*(const std::__cxx11::basic_string, std::allocator >*)((char*)& + offsetof(boost::python::extract, std::allocator > >,boost::python::extract, std::allocator > >::.boost::python::converter::extract_rvalue, std::allocator > >::m_data.boost::python::converter::rvalue_from_python_data, std::allocator > >::.boost::python::converter::rvalue_from_python_storage, std::allocator > >::storage)).std::__cxx11::basic_string::_M_string_length’ may be used uninitialized [-Wmaybe-uninitialized] 1165 | size_type __sz = _M_string_length; | ^~~~ /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp: In function ‘boost::python::api::object RDKit::AddRecursiveQueriesToReaction(ChemicalReaction&, boost::python::dict, std::string, bool)’: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:402:69: note: ‘’ declared here 402 | std::string k = python::extract(queryDict.keys()[i]); | ^ [ 94%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/RGroupDecomposition.dir/link.d -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2025.03.6 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupDecompJSONParsers.cpp.o ../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../lib/libRDKitga.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2025.03.6 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 94%] Built target RGroupDecomposition [ 94%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSet.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSet.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/SynthonSet.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/SynthonSet.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSet.cpp [ 94%] Linking CXX executable testO3AAlign cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testO3AAlign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testO3AAlign.dir/link.d CMakeFiles/testO3AAlign.dir/testO3AAlign.cpp.o -o testO3AAlign ../../../lib/libRDKitO3AAlign.so.1.2025.03.6 ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitDistGeomHelpers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitDistGeometry.so.1.2025.03.6 ../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 94%] Built target testO3AAlign make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake "--color=" testRGroupDecomp make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 94%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -MF CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o.d -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp [ 94%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdChemReactions.dir/link.d -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libRDKitMarvinParser.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 94%] Built target rdChemReactions make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/DependInfo.cmake "--color=" testRGroupDecompInternals make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 94%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o -MF CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o.d -o CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/testRGroupInternals.cpp [ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdMolAlign.dir/link.d -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libRDKitO3AAlign.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitForceFieldHelpers.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitForceField.so.1.2025.03.6 ../../../../lib/libRDKitOptimizer.so.1.2025.03.6 ../../../../lib/libRDKitTrajectory.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 95%] Built target rdMolAlign make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/DependInfo.cmake "--color=" rgroupCatchTests make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 95%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o -MF CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o.d -o CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/catch_rgd.cpp [ 96%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdchem.dir/link.d -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o CMakeFiles/rdchem.dir/StereoGroup.cpp.o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o CMakeFiles/rdchem.dir/Chirality.cpp.o ../../../lib/libRDKitMarvinParser.so.1.2025.03.6 ../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 96%] Built target rdchem make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/DependInfo.cmake "--color=" gaExample make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 96%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/GaExample.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/gaExample.dir/GaExample.cpp.o -MF CMakeFiles/gaExample.dir/GaExample.cpp.o.d -o CMakeFiles/gaExample.dir/GaExample.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/GaExample.cpp [ 97%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/Synthon.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/Synthon.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/Synthon.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/Synthon.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/Synthon.cpp [ 97%] Linking CXX executable testRGroupDecompInternals cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecompInternals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testRGroupDecompInternals.dir/link.d CMakeFiles/testRGroupDecompInternals.dir/testRGroupInternals.cpp.o -o testRGroupDecompInternals ../../../lib/libRDKitRGroupDecomposition.so.1.2025.03.6 ../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../lib/libRDKitga.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 97%] Built target testRGroupDecompInternals make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake "--color=" rdRGroupDecomposition make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 97%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -MF CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o.d -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp [ 97%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearcher.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearcher.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearcher.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearcher.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceSearcher.cpp [ 97%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSubstructureSearcher.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSubstructureSearcher.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSubstructureSearcher.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSubstructureSearcher.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceSubstructureSearcher.cpp [ 97%] Linking CXX executable gaExample cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaExample.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/gaExample.dir/link.d CMakeFiles/gaExample.dir/GaExample.cpp.o -o gaExample ../../../lib/libRDKitRGroupDecomposition.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_program_options.so.1.83.0 ../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../lib/libRDKitga.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 97%] Built target gaExample [ 97%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -MF CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/PatternFactory.cpp [ 97%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceFingerprintSearcher.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceFingerprintSearcher.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceFingerprintSearcher.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceFingerprintSearcher.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceFingerprintSearcher.cpp [ 97%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceRascalSearcher.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceRascalSearcher.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceRascalSearcher.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceRascalSearcher.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceRascalSearcher.cpp [ 97%] Linking CXX executable rgroupCatchTests cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/rgroupCatchTests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rgroupCatchTests.dir/link.d CMakeFiles/rgroupCatchTests.dir/catch_rgd.cpp.o -o rgroupCatchTests ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitRGroupDecomposition.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../lib/libRDKitga.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 97%] Built target rgroupCatchTests [ 97%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceHitSet.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceHitSet.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceHitSet.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceHitSet.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceHitSet.cpp [ 97%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SubstructLibrary.dir/link.d -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2025.03.6 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 -ldl /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libz.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2025.03.6 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 97%] Built target SubstructLibrary [ 97%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SearchResults.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SearchResults.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/SearchResults.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/SearchResults.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SearchResults.cpp [ 97%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/MemoryMappedFileReader.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SYNTHONSPACESEARCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/MemoryMappedFileReader.cpp.o -MF CMakeFiles/SynthonSpaceSearch.dir/MemoryMappedFileReader.cpp.o.d -o CMakeFiles/SynthonSpaceSearch.dir/MemoryMappedFileReader.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/MemoryMappedFileReader.cpp [ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdRGroupDecomposition.dir/link.d -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../../lib/libRDKitga.so.1.2025.03.6 ../../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 97%] Built target rdRGroupDecomposition make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake "--color=" substructLibraryTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 98%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -MF CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o.d -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/DependInfo.cmake "--color=" substructLibraryCatchTest make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 98%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -MF CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o.d -o CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/catch_tests.cpp make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake "--color=" rdSubstructLibrary make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 98%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp [ 99%] Linking CXX executable testRGroupDecomp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1 [ 99%] Linking CXX shared library ../../../lib/libRDKitSynthonSpaceSearch.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/cmake -E cmake_link_script CMakeFiles/SynthonSpaceSearch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testRGroupDecomp.dir/link.d CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp ../../../lib/libRDKitRGroupDecomposition.so.1.2025.03.6 ../../../lib/libRDKitFMCS.so.1.2025.03.6 ../../../lib/libRDKitga.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 99%] Built target testRGroupDecomp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SynthonSpaceSearch.dir/link.d -Wl,-soname,libRDKitSynthonSpaceSearch.so.1 -o ../../../lib/libRDKitSynthonSpaceSearch.so.1.2025.03.6 CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearch_details.cpp.o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpace.cpp.o CMakeFiles/SynthonSpaceSearch.dir/SynthonSet.cpp.o CMakeFiles/SynthonSpaceSearch.dir/Synthon.cpp.o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearcher.cpp.o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSubstructureSearcher.cpp.o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceFingerprintSearcher.cpp.o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceRascalSearcher.cpp.o CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceHitSet.cpp.o CMakeFiles/SynthonSpaceSearch.dir/SearchResults.cpp.o CMakeFiles/SynthonSpaceSearch.dir/MemoryMappedFileReader.cpp.o ../../../lib/libRDKitRascalMCES.so.1.2025.03.6 ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSynthonSpaceSearch.so.1.2025.03.6 ../../../lib/libRDKitSynthonSpaceSearch.so.1 ../../../lib/libRDKitSynthonSpaceSearch.so make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 99%] Built target SynthonSpaceSearch make -f Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceSubstructureSearch.dir/build.make Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceSubstructureSearch.dir/depend make -f Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceFingerprintSearch.dir/build.make Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceFingerprintSearch.dir/depend make -f Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceRascalSearch.dir/build.make Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceRascalSearch.dir/depend make -f Code/GraphMol/SynthonSpaceSearch/Wrap/CMakeFiles/rdSynthonSpaceSearch.dir/build.make Code/GraphMol/SynthonSpaceSearch/Wrap/CMakeFiles/rdSynthonSpaceSearch.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceSubstructureSearch.dir/DependInfo.cmake "--color=" testSynthonSpaceSubstructureSearch make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceFingerprintSearch.dir/DependInfo.cmake "--color=" testSynthonSpaceFingerprintSearch make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceRascalSearch.dir/DependInfo.cmake "--color=" testSynthonSpaceRascalSearch make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/Wrap /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/Wrap/CMakeFiles/rdSynthonSpaceSearch.dir/DependInfo.cmake "--color=" rdSynthonSpaceSearch make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceRascalSearch.dir/build.make Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceRascalSearch.dir/build make -f Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceFingerprintSearch.dir/build.make Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceFingerprintSearch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceSubstructureSearch.dir/build.make Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceSubstructureSearch.dir/build make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make -f Code/GraphMol/SynthonSpaceSearch/Wrap/CMakeFiles/rdSynthonSpaceSearch.dir/build.make Code/GraphMol/SynthonSpaceSearch/Wrap/CMakeFiles/rdSynthonSpaceSearch.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 99%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceRascalSearch.dir/rascal_search_catch_tests.cpp.o [ 99%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceFingerprintSearch.dir/fingerprint_search_catch_tests.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceRascalSearch.dir/rascal_search_catch_tests.cpp.o -MF CMakeFiles/testSynthonSpaceRascalSearch.dir/rascal_search_catch_tests.cpp.o.d -o CMakeFiles/testSynthonSpaceRascalSearch.dir/rascal_search_catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/rascal_search_catch_tests.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceFingerprintSearch.dir/fingerprint_search_catch_tests.cpp.o -MF CMakeFiles/testSynthonSpaceFingerprintSearch.dir/fingerprint_search_catch_tests.cpp.o.d -o CMakeFiles/testSynthonSpaceFingerprintSearch.dir/fingerprint_search_catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/fingerprint_search_catch_tests.cpp [ 99%] Building CXX object Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceSubstructureSearch.dir/substructure_search_catch_tests.cpp.o [ 99%] Building CXX object Code/GraphMol/SynthonSpaceSearch/Wrap/CMakeFiles/rdSynthonSpaceSearch.dir/rdSynthonSpaceSearch.cpp.o cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/Wrap && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSynthonSpaceSearch_EXPORTS -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include -isystem /usr/include/python3.13 -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -fPIC -MD -MT Code/GraphMol/SynthonSpaceSearch/Wrap/CMakeFiles/rdSynthonSpaceSearch.dir/rdSynthonSpaceSearch.cpp.o -MF CMakeFiles/rdSynthonSpaceSearch.dir/rdSynthonSpaceSearch.cpp.o.d -o CMakeFiles/rdSynthonSpaceSearch.dir/rdSynthonSpaceSearch.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/Wrap/rdSynthonSpaceSearch.cpp cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/reproducible-path/rdkit-202503.6/External -I/build/reproducible-path/rdkit-202503.6/Code -I/build/reproducible-path/rdkit-202503.6/External/boost-numeric-bindings -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT Code/GraphMol/SynthonSpaceSearch/CMakeFiles/testSynthonSpaceSubstructureSearch.dir/substructure_search_catch_tests.cpp.o -MF CMakeFiles/testSynthonSpaceSubstructureSearch.dir/substructure_search_catch_tests.cpp.o.d -o CMakeFiles/testSynthonSpaceSubstructureSearch.dir/substructure_search_catch_tests.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/substructure_search_catch_tests.cpp [ 99%] Linking CXX executable substructLibraryCatchTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/substructLibraryCatchTest.dir/link.d CMakeFiles/substructLibraryCatchTest.dir/catch_tests.cpp.o -o substructLibraryCatchTest ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitSubstructLibrary.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 99%] Built target substructLibraryCatchTest [ 99%] Linking CXX executable substructLibraryTest cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/substructLibraryTest.dir/link.d CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest ../../../lib/libRDKitSubstructLibrary.so.1.2025.03.6 ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [ 99%] Built target substructLibraryTest [100%] Linking CXX executable testSynthonSpaceRascalSearch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSynthonSpaceRascalSearch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSynthonSpaceRascalSearch.dir/link.d CMakeFiles/testSynthonSpaceRascalSearch.dir/rascal_search_catch_tests.cpp.o -o testSynthonSpaceRascalSearch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitSubstructLibrary.so.1.2025.03.6 ../../../lib/libRDKitSynthonSpaceSearch.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitRascalMCES.so.1.2025.03.6 ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [100%] Built target testSynthonSpaceRascalSearch [100%] Linking CXX executable testSynthonSpaceFingerprintSearch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSynthonSpaceFingerprintSearch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSynthonSpaceFingerprintSearch.dir/link.d CMakeFiles/testSynthonSpaceFingerprintSearch.dir/fingerprint_search_catch_tests.cpp.o -o testSynthonSpaceFingerprintSearch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitSubstructLibrary.so.1.2025.03.6 ../../../lib/libRDKitSynthonSpaceSearch.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitRascalMCES.so.1.2025.03.6 ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [100%] Built target testSynthonSpaceFingerprintSearch [100%] Linking CXX shared module ../../../../rdkit/Chem/rdSynthonSpaceSearch.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSynthonSpaceSearch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdSynthonSpaceSearch.dir/link.d -o ../../../../rdkit/Chem/rdSynthonSpaceSearch.so CMakeFiles/rdSynthonSpaceSearch.dir/rdSynthonSpaceSearch.cpp.o ../../../../lib/libRDKitSynthonSpaceSearch.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitRascalMCES.so.1.2025.03.6 ../../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [100%] Built target rdSynthonSpaceSearch [100%] Linking CXX executable testSynthonSpaceSubstructureSearch cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSynthonSpaceSubstructureSearch.dir/link.txt --verbose=1 /usr/bin/ld: CMakeFiles/testSynthonSpaceSubstructureSearch.dir/substructure_search_catch_tests.cpp.o: in function `CATCH2_INTERNAL_TEST_20()': ./obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/./Code/GraphMol/SynthonSpaceSearch/substructure_search_catch_tests.cpp:334:(.text+0x1c5c): warning: the use of `tmpnam' is dangerous, better use `mkstemp' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testSynthonSpaceSubstructureSearch.dir/link.d CMakeFiles/testSynthonSpaceSubstructureSearch.dir/substructure_search_catch_tests.cpp.o -o testSynthonSpaceSubstructureSearch ../../RDGeneral/librdkitCatch.a ../../../lib/libRDKitSubstructLibrary.so.1.2025.03.6 ../../../lib/libRDKitSynthonSpaceSearch.so.1.2025.03.6 /usr/lib/libCatch2.a ../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../lib/libRDKitRascalMCES.so.1.2025.03.6 ../../../lib/libRDKitDescriptors.so.1.2025.03.6 ../../../lib/libRDKitFileParsers.so.1.2025.03.6 ../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../lib/libRDKitAlignment.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../lib/libRDKitPartialCharges.so.1.2025.03.6 ../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../lib/libRDKitDataStructs.so.1.2025.03.6 ../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [100%] Built target testSynthonSpaceSubstructureSearch [100%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so cd /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -shared -Wl,-z,relro -Wl,-z,now -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,--dependency-file=CMakeFiles/rdSubstructLibrary.dir/link.d -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.so.1.2025.03.6 ../../../../lib/libRDKitRDBoost.so.1.2025.03.6 ../../../../lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 ../../../../lib/libRDKitMolEnumerator.so.1.2025.03.6 ../../../../lib/libRDKitTautomerQuery.so.1.2025.03.6 ../../../../lib/libRDKitMolStandardize.so.1.2025.03.6 ../../../../lib/libRDKitChemReactions.so.1.2025.03.6 ../../../../lib/libRDKitFileParsers.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libmaeparser.so.1.3.3 /usr/lib/powerpc64le-linux-gnu/libz.so ../../../../lib/libRDKitFilterCatalog.so.1.2025.03.6 ../../../../lib/libRDKitChemTransforms.so.1.2025.03.6 ../../../../lib/libRDKitDepictor.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libcoordgen.so.3.0.2 ../../../../lib/libRDKitMolAlign.so.1.2025.03.6 ../../../../lib/libRDKitMolTransforms.so.1.2025.03.6 ../../../../lib/libRDKitEigenSolvers.so.1.2025.03.6 ../../../../lib/libRDKitAlignment.so.1.2025.03.6 ../../../../lib/libRDKitFingerprints.so.1.2025.03.6 ../../../../lib/libRDKitCIPLabeler.so.1.2025.03.6 ../../../../lib/libRDKitSubgraphs.so.1.2025.03.6 ../../../../lib/libRDKitSubstructMatch.so.1.2025.03.6 ../../../../lib/libRDKitGenericGroups.so.1.2025.03.6 ../../../../lib/libRDKitSmilesParse.so.1.2025.03.6 ../../../../lib/libRDKitGraphMol.so.1.2025.03.6 ../../../../lib/libRDKitRDGeometryLib.so.1.2025.03.6 ../../../../lib/libRDKitCatalogs.so.1.2025.03.6 ../../../../lib/libRDKitDataStructs.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_numpy313.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 ../../../../lib/libRDKitRDGeneral.so.1.2025.03.6 /usr/lib/powerpc64le-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/powerpc64le-linux-gnu/libboost_iostreams.so.1.83.0 -ldl make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' [100%] Built target rdSubstructLibrary make[3]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' for v in $(pg_buildext supported-versions); do \ (cd Code/PgSQL/rdkit/build-$v && make || $(cat ../../../../obj-*/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/link.txt | sed -e 's#\.\./\.\./#../../../../obj-*/Code/#g')); \ done make[2]: Entering directory '/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18' /usr/bin/cmake -S/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit -B/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18/CMakeFiles /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18' make -f CMakeFiles/rdkit.dir/build.make CMakeFiles/rdkit.dir/depend make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18' cd /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18 /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18 /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18/CMakeFiles/rdkit.dir/DependInfo.cmake "--color=" rdkit make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18' make -f CMakeFiles/rdkit.dir/build.make CMakeFiles/rdkit.dir/build make[4]: Entering directory '/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18' [ 7%] Building CXX object CMakeFiles/rdkit.dir/adapter.cpp.o /usr/bin/c++ -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++20 -fPIC -MD -MT CMakeFiles/rdkit.dir/adapter.cpp.o -MF CMakeFiles/rdkit.dir/adapter.cpp.o.d -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/adapter.cpp [ 14%] Building C object CMakeFiles/rdkit.dir/bfp_op.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/bfp_op.c.o -MF CMakeFiles/rdkit.dir/bfp_op.c.o.d -o CMakeFiles/rdkit.dir/bfp_op.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/bfp_op.c [ 21%] Building C object CMakeFiles/rdkit.dir/cache.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/cache.c.o -MF CMakeFiles/rdkit.dir/cache.c.o.d -o CMakeFiles/rdkit.dir/cache.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/cache.c [ 28%] Building C object CMakeFiles/rdkit.dir/guc.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/guc.c.o -MF CMakeFiles/rdkit.dir/guc.c.o.d -o CMakeFiles/rdkit.dir/guc.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/guc.c [ 35%] Building C object CMakeFiles/rdkit.dir/low_gist.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/low_gist.c.o -MF CMakeFiles/rdkit.dir/low_gist.c.o.d -o CMakeFiles/rdkit.dir/low_gist.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/low_gist.c [ 42%] Building C object CMakeFiles/rdkit.dir/mol_op.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/mol_op.c.o -MF CMakeFiles/rdkit.dir/mol_op.c.o.d -o CMakeFiles/rdkit.dir/mol_op.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/mol_op.c [ 50%] Building C object CMakeFiles/rdkit.dir/rdkit_gist.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/rdkit_gist.c.o -MF CMakeFiles/rdkit.dir/rdkit_gist.c.o.d -o CMakeFiles/rdkit.dir/rdkit_gist.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/rdkit_gist.c [ 57%] Building C object CMakeFiles/rdkit.dir/bfp_gist.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/bfp_gist.c.o -MF CMakeFiles/rdkit.dir/bfp_gist.c.o.d -o CMakeFiles/rdkit.dir/bfp_gist.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/bfp_gist.c [ 64%] Building C object CMakeFiles/rdkit.dir/bfp_gin.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/bfp_gin.c.o -MF CMakeFiles/rdkit.dir/bfp_gin.c.o.d -o CMakeFiles/rdkit.dir/bfp_gin.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/bfp_gin.c [ 71%] Building C object CMakeFiles/rdkit.dir/bitstring.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/bitstring.c.o -MF CMakeFiles/rdkit.dir/bitstring.c.o.d -o CMakeFiles/rdkit.dir/bitstring.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/bitstring.c [ 78%] Building C object CMakeFiles/rdkit.dir/rdkit_io.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/rdkit_io.c.o -MF CMakeFiles/rdkit.dir/rdkit_io.c.o.d -o CMakeFiles/rdkit.dir/rdkit_io.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/rdkit_io.c [ 85%] Building C object CMakeFiles/rdkit.dir/rxn_op.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/rxn_op.c.o -MF CMakeFiles/rdkit.dir/rxn_op.c.o.d -o CMakeFiles/rdkit.dir/rxn_op.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/rxn_op.c [ 92%] Building C object CMakeFiles/rdkit.dir/sfp_op.c.o /usr/bin/cc -DRDKITVER=\"007600\" -DRDK_TOOLKIT_VERSION=\"\" -Drdkit_EXPORTS -I/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/../../../Code -I/usr/include/postgresql -I/usr/include/postgresql/18/server -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu99 -fPIC -MD -MT CMakeFiles/rdkit.dir/sfp_op.c.o -MF CMakeFiles/rdkit.dir/sfp_op.c.o.d -o CMakeFiles/rdkit.dir/sfp_op.c.o -c /build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/sfp_op.c [100%] Linking CXX shared library librdkit.so /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1 /usr/bin/ld: cannot find -lGeneralizedSubstruct: No such file or directory /usr/bin/ld: cannot find -lMolEnumerator: No such file or directory /usr/bin/ld: cannot find -lTautomerQuery: No such file or directory /usr/bin/ld: cannot find -lMolDraw2D: No such file or directory /usr/bin/ld: cannot find -lMolTransforms: No such file or directory /usr/bin/ld: cannot find -lMolHash: No such file or directory /usr/bin/ld: cannot find -lFMCS: No such file or directory /usr/bin/ld: cannot find -lChemReactions: No such file or directory /usr/bin/ld: cannot find -lChemTransforms: No such file or directory /usr/bin/ld: cannot find -lFileParsers: No such file or directory /usr/bin/ld: cannot find -lSmilesParse: No such file or directory /usr/bin/ld: cannot find -lFingerprints: No such file or directory /usr/bin/ld: cannot find -lSubgraphs: No such file or directory /usr/bin/ld: cannot find -lDescriptors: No such file or directory /usr/bin/ld: cannot find -lPartialCharges: No such file or directory /usr/bin/ld: cannot find -lSubstructMatch: No such file or directory /usr/bin/ld: cannot find -lGraphMol: No such file or directory /usr/bin/ld: cannot find -lEigenSolvers: No such file or directory /usr/bin/ld: cannot find -lDataStructs: No such file or directory /usr/bin/ld: cannot find -lDepictor: No such file or directory /usr/bin/ld: cannot find -lRDGeometryLib: No such file or directory /usr/bin/ld: cannot find -lRDGeneral: No such file or directory /usr/bin/ld: cannot find -lrdkit_base: No such file or directory collect2: error: ld returned 1 exit status /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/rdkit-202503.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rdkit.dir/link.d -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o /usr/lib/powerpc64le-linux-gnu/libpq.so -lGeneralizedSubstruct -lMolEnumerator -lTautomerQuery -lMolDraw2D -lMolTransforms -lMolHash -lFMCS -lChemReactions -lChemTransforms -lFileParsers -lSmilesParse -lFingerprints -lSubgraphs -lDescriptors -lPartialCharges -lSubstructMatch -lGraphMol -lEigenSolvers -lDataStructs -lDepictor -lRDGeometryLib -lRDGeneral -lrdkit_base make[4]: *** [CMakeFiles/rdkit.dir/build.make:297: librdkit.so] Error 1 make[4]: Leaving directory '/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18' make[3]: *** [CMakeFiles/Makefile2:90: CMakeFiles/rdkit.dir/all] Error 2 make[3]: Leaving directory '/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18' make[2]: *** [Makefile:139: all] Error 2 make[2]: Leaving directory '/build/reproducible-path/rdkit-202503.6/Code/PgSQL/rdkit/build-18' (cd /build/reproducible-path/rdkit-202503.6/Code; doxygen doxygen/doxygen.config) warning: Tag 'TCL_SUBST' at line 213 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SYMBOL_CACHE_SIZE' at line 337 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 557 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 869 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 965 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 971 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1162 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1189 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1327 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1425 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1431 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1596 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1608 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1617 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 1647 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 1652 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 1792 of file 'doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Doxygen version used: 1.15.0 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for plantuml files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Trajectory Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Test Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Fonts Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Qt Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Qt/Demo Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/data Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/libs Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/AcidBaseCatalog Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TautomerCatalog Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TransformCatalog Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/FragmentCatalog Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DetermineBonds Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/TautomerQuery Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GenericGroups Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/data Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProcessing Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/tutorial Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/Catalogs Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/DataStructs Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/Query Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/ML Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/ML/Data Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/ML/Cluster Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/ML/Cluster/Murtagh Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/DataManip Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/DataManip/MetricMatrixCalc Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/RDGeneral Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/hash Searching for files in directory /build/reproducible-path/rdki/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionParser.h:171: warning: unbalanced grouping commands t-202503.6/Code/RDGeneral/hash/detail Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/RDBoost Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/DistGeom Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/ForceField Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/Numerics Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/Numerics/Optimizer Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/Numerics/EigenSolvers Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/Numerics/Alignment Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/Geometry Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/Features Searching for files in directory /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations/Abbreviations.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations/Abbreviations.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Atom.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Atom.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/atomic_data.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/atomic_data.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/AtomIterators.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/AtomIterators.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Atropisomers.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Atropisomers.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Bond.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Bond.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/BondIterators.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/BondIterators.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Canon.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Canon.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/CartesianProduct.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/CartesianProduct.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/Enumerate.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/Enumerate.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EnumerateBase.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EnumerateBase.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/RandomSample.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/RandomSample.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/PreprocessRxn.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/PreprocessRxn.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Reaction.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Reaction.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionFingerprints.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionFingerprints.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionParser.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionParser.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionPickler.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionPickler.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionRunner.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionRunner.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/SanitizeRxn.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/SanitizeRxn.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/ChemTransforms.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/ChemTransforms.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/MolFragmenter.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/MolFragmenter.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/MolFragmenterJSONParser.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/MolFragmenterJSONParser.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Chirality.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Chirality.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/CIPLabeler.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/CIPLabeler.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/CIPMol.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/CIPMol.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/AtropisomerBond.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/AtropisomerBond.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Configuration.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Configuration.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Sp2Bond.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Sp2Bond.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Tetrahedral.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/configs/Tetrahedral.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Descriptor.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Descriptor.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Digraph.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Digraph.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Edge.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Edge.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Mancude.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Mancude.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Node.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Node.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Priority.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Priority.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Pairlist.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Pairlist.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule1a.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule1a.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule1b.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule1b.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule2.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule2.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule3.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule3.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4a.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4a.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4b.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4b.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4c.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule4c.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule5.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule5.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule5New.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule5New.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule6.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rule6.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rules.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/Rules.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/SequenceRule.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/rules/SequenceRule.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Sort.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Sort.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/TooManyNodesException.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/TooManyNodesException.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Conformer.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Conformer.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/DepictUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/DepictUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/EmbeddedFrag.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/EmbeddedFrag.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/RDDepictor.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/RDDepictor.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/Templates.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/Templates.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/TemplateSmiles.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/TemplateSmiles.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect/Deprotect.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect/Deprotect.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/AtomFeat.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/AtomFeat.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/AUTOCORR2D.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/AUTOCORR2D.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/AUTOCORR3D.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/AUTOCORR3D.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/BCUT.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/BCUT.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/ConnectivityDescriptors.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/ConnectivityDescriptors.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/CoulombMat.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/CoulombMat.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Crippen.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Crippen.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Data3Ddescriptors.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Data3Ddescriptors.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/DCLV.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/DCLV.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/EEM.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/EEM.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/GETAWAY.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/GETAWAY.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Lipinski.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Lipinski.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolData3Ddescriptors.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolData3Ddescriptors.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolDescriptors.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolDescriptors.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolDescriptors3D.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolDescriptors3D.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolSurf.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MolSurf.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MORSE.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MORSE.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MQN.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/MQN.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/OxidationNumbers.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/OxidationNumbers.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/PBF.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/PBF.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/PMI.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/PMI.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Property.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Property.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/RDF.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/RDF.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/RegisterDescriptor.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/RegisterDescriptor.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/USRDescriptor.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/USRDescriptor.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/WHIM.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/WHIM.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/details.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/details.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DetermineBonds/DetermineBonds.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DetermineBonds/DetermineBonds.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/Embedder.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/Embedder.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers/EnumerateStereoisomers.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers/EnumerateStereoisomers.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers/Flippers.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers/Flippers.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/CDXMLParser.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/CDXMLParser.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileParsers.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileParsers.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileParserUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileParserUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/GeneralFileReader.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/GeneralFileReader.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MaestroProperties.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MaestroProperties.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolFileStereochem.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolFileStereochem.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSGroupParsing.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSGroupParsing.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSGroupWriting.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSGroupWriting.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.v1API.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.v1API.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolWriters.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolWriters.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MultithreadedMolSupplier.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MultithreadedMolSupplier.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MultithreadedSDMolSupplier.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MultithreadedSDMolSupplier.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/PNGParser.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/PNGParser.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/ProximityBonds.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/ProximityBonds.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SequenceParsers.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SequenceParsers.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SequenceWriters.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SequenceWriters.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterCatalog.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterCatalog.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterCatalogEntry.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterCatalogEntry.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatchers.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatchers.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/Filters.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/Filters.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/AtomPairGenerator.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/AtomPairGenerator.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/AtomPairs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/AtomPairs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintGenerator.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintGenerator.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Fingerprints.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Fingerprints.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintUtil.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintUtil.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MACCS.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MACCS.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MHFP.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MHFP.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganFingerprints.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganFingerprints.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganGenerator.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganGenerator.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/RDKitFPGenerator.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/RDKitFPGenerator.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Composition2N.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Composition2N.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/DebugTrace.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/DebugTrace.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/DuplicatedSeedCache.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/DuplicatedSeedCache.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/FMCS.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/FMCS.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Graph.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Graph.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/MatchTable.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/MatchTable.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/MaximumCommonSubgraph.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/MaximumCommonSubgraph.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Seed.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Seed.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/SeedSet.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/SeedSet.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/SubstructMatchCustom.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/SubstructMatchCustom.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/SubstructureCache.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/SubstructureCache.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Target.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Target.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/TargetMatch.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/TargetMatch.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleContribs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleContribs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/FFConvenience.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/FFConvenience.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatalogEntry.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatalogEntry.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatalogUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatalogUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatGenerator.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatGenerator.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatParams.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragCatParams.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragFPGenerator.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/FragFPGenerator.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct/XQMol.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct/XQMol.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GenericGroups/GenericGroups.h... Parsing file /build/reproducible-path/rd/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.h:233: warning: unbalanced grouping commands kit-202503.6/Code/GraphMol/GenericGroups/GenericGroups.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GraphMol.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/GraphMol.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse/MarvinDefs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse/MarvinDefs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse/MarvinParser.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse/MarvinParser.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA/MMPA.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA/MMPA.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/AlignMolecules.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/AlignMolecules.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/O3AAlignMolecules.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/O3AAlignMolecules.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolBundle.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolBundle.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/MolCatalog.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/MolCatalog.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/MolCatalogEntry.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/MolCatalogEntry.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/MolCatalogParams.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/MolCatalogParams.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/FeatureParser.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/FeatureParser.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/AtomSymbol.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/AtomSymbol.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawAnnotation.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawAnnotation.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMol.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMol.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCH.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCH.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCHLasso.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCHLasso.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawShape.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawShape.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawText.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawText.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextCairo.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextCairo.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFT.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFT.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFTCairo.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFTCairo.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFTJS.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFTJS.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFTSVG.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextFTSVG.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextJS.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextJS.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextNotFT.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextNotFT.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextSVG.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawTextSVG.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Fonts/roboto_regular.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Fonts/roboto_regular.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Fonts/telex_regular.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Fonts/telex_regular.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DHelpers.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DJS.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DJS.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Qt/DrawTextFTQt.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Qt/DrawTextFTQt.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Qt/DrawTextQt.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphM/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:522: warning: unbalanced grouping commands /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:782: warning: unbalanced grouping commands ol/MolDraw2D/Qt/DrawTextQt.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Qt/MolDraw2DQt.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Qt/MolDraw2DQt.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/StringRect.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/StringRect.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/LinkNode.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/LinkNode.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/mf.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/mf.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/MolHash.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/MolHash.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/nmmolhash.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/nmmolhash.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/MIFDescriptors.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/MIFDescriptors.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/details.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/details.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/MolInterchange.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/MolInterchange.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolPickler.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolPickler.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProcessing/MolProcessing.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProcessing/MolProcessing.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Charge.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Charge.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Fragment.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Fragment.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Metal.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Metal.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/MolStandardize.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/MolStandardize.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Normalize.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Normalize.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Pipeline.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Pipeline.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Tautomer.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Tautomer.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Validate.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Validate.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms/MolTransforms.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms/MolTransforms.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MonomerInfo.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MonomerInfo.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/new_canon.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/new_canon.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges/GasteigerCharges.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges/GasteigerCharges.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges/GasteigerParams.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges/GasteigerParams.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PeriodicTable.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/PeriodicTable.h... Preprocessing /build/reproducible-path/rd/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ROMol.h:416: warning: unbalanced grouping commands kit-202503.6/Code/GraphMol/QueryAtom.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryAtom.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryBond.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryBond.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryOps.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryOps.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/PartitionSet.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/PartitionSet.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalClusterOptions.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalClusterOptions.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalDetails.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalDetails.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalMCES.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalMCES.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalOptions.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalOptions.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalResult.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/RascalResult.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RDKitBase.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RDKitBase.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RDKitQueries.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RDKitQueries.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs/ReducedGraphs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs/ReducedGraphs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Resonance.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Resonance.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupCore.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupCore.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupData.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupData.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecompData.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecompData.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecompJSONParsers.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecompJSONParsers.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupFingerprintScore.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupFingerprintScore.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupGa.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupGa.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupMatch.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupMatch.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupScore.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupScore.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/RGroupUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RingInfo.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RingInfo.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Rings.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Rings.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ROMol.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ROMol.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RWMol.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RWMol.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SanitException.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SanitException.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork/detail.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork/detail.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers/ShapeEncoder.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers/ShapeEncoder.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers/ShapeUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers/ShapeUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/SLNAttribs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/SLNAttribs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/SLNParse.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/SLNParse.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/SLNParseOps.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/SLNParseOps.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/CanonicalizeStereoGroups.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/CanonicalizeStereoGroups.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmartsWrite.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmartsWrite.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesJSONParsers.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesJSONParsers.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesParse.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesParse.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesParseOps.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesParseOps.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesWrite.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesWrite.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StereoGroup.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StereoGroup.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/Pattern.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/Pattern.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/ReCharge.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/ReCharge.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/Stereo.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/Stereo.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/StripSmallFragments.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/StripSmallFragments.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/StructChecker.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/StructChecker.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/StructCheckerOptions.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/StructCheckerOptions.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/Tautomer.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/Tautomer.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/Utilites.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/StructChecker/Utilites.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs/Subgraphs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs/Subgraphs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs/SubgraphUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Subgraphs/SubgraphUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstanceGroup.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstanceGroup.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructMatch.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructMatch.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/PatternFactory.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/PatternFactory.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/SubstructLibrary.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/SubstructLibrary.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/MemoryMappedFileReader.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/MemoryMappedFileReader.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SearchResults.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SearchResults.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/Synthon.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/Synthon.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSet.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSet.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpace.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpace.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceFingerprintSearcher.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceFingerprintSearcher.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceHitSet.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceHitSet.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceRascalSearcher.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceRascalSearcher.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceSearch_details.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceSearch_details.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceSearcher.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceSearcher.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceSubstructureSearcher.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpaceSubstructureSearcher.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/TautomerQuery/TautomerQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/TautomerQuery/TautomerQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Trajectory/Snapshot.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Trajectory/Snapshot.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Trajectory/Trajectory.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Trajectory/Trajectory.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Catalogs/Catalog.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Catalogs/Catalog.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Catalogs/CatalogEntry.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Catalogs/CatalogEntry.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Catalogs/CatalogParams.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Catalogs/CatalogParams.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/base64.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/base64.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/BitOps.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/BitOps.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/BitVect.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/BitVect.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/BitVects.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/BitVects.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/BitVectUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/BitVectUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/DatastructsException.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/DatastructsException.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/DatastructsStreamOps.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/DatastructsStreamOps.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/DiscreteDistMat.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/DiscreteDistMat.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/DiscreteValueVect.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/DiscreteValueVect.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/ExplicitBitVect.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/ExplicitBitVect.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/FPBReader.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/FPBReader.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/MultiFPBReader.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/MultiFPBReader.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/RealValueVect.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/RealValueVect.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/SparseBitVect.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/SparseBitVect.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataStructs/SparseIntVect.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataStructs/SparseIntVect.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/AndQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/AndQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/EqualityQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/EqualityQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/GreaterEqualQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/GreaterEqualQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/GreaterQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/GreaterQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/LessEqualQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/LessEqualQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/LessQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/LessQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/NullQueryAlgebra.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/NullQueryAlgebra.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/OrQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/OrQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/Query.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/Query.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/QueryObjects.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/QueryObjects.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/RangeQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/RangeQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/SetQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/SetQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Query/XOrQuery.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Query/XOrQuery.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/CorrMatGenerator.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/CorrMatGenerator.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/InfoBitRanker.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/InfoBitRanker.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/InfoGainFuncs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/InfoGainFuncs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataManip/MetricMatrixCalc/MetricFuncs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataManip/MetricMatrixCalc/MetricFuncs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/DistPicker.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/DistPicker.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/HierarchicalClusterPicker.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/HierarchicalClusterPicker.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/LeaderPicker.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/LeaderPicker.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/MaxMinPicker.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/MaxMinPicker.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/BadFileException.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/BadFileException.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/BetterEnums.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/BetterEnums.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/BoostEndInclude.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/BoostEndInclude.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/BoostStartInclude.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/BoostStartInclude.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/ConcurrentQueue.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/ConcurrentQueue.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/ControlCHandler.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/ControlCHandler.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Dict.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Dict.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/enum.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/enum.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Exceptions.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Exceptions.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/export.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/export.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/FileParseException.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/FileParseException.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/hanoiSort.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/hanoiSort.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Invariant.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Invariant.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/LocaleSwitcher.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/LocaleSwitcher.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Ranking.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/Ranking.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDAny.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDAny.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDConfig.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDConfig.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDExportMacros.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDExportMacros.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDLog.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDLog.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDProps.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDProps.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDThreads.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDThreads.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDValue-doublemagic.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDValue-doublemagic.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDValue-taggedunion.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDValue-taggedunion.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDValue.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/RDValue.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/StreamOps.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/StreamOps.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/types.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/types.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/utils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/utils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/versions.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDGeneral/versions.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDBoost/boost_numpy.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDBoost/boost_numpy.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDBoost/import_array.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDBoost/import_array.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDBoost/pyint_api.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDBoost/pyint_api.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDBoost/PySequenceHolder.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDBoost/PySequenceHolder.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDBoost/python.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDBoost/python.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/RDBoost/python_streambuf.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/RDBoost/python_streambuf.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DistGeom/BoundsMatrix.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DistGeom/BoundsMatrix.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DistGeom/ChiralSet.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DistGeom/ChiralSet.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DistGeom/ChiralViolationContribs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DistGeom/ChiralViolationContribs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DistGeom/DistGeomUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DistGeom/DistGeomUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DistGeom/DistViolationContribs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DistGeom/DistViolationContribs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DistGeom/FourthDimContribs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DistGeom/FourthDimContribs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/DistGeom/TriangleSmooth.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/DistGeom/TriangleSmooth.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraints.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraints.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/Contrib.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/Contrib.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/DistanceConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/DistanceConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/DistanceConstraints.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/DistanceConstraints.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/ForceField.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/ForceField.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/AngleBend.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/AngleBend.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/AngleConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/AngleConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/BondStretch.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/BondStretch.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/Contribs.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/Contribs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/DistanceConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/DistanceConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/Nonbonded.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/Nonbonded.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/OopBend.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/OopBend.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/Params.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/Params.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/PositionConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/PositionConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/StretchBend.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/StretchBend.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/TorsionAngle.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/TorsionAngle.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/TorsionConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/TorsionConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/PositionConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/PositionConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/TorsionConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/TorsionConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/AngleBend.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/AngleBend.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/AngleConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/AngleConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/BondStretch.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/BondStretch.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Contribs.h... Parsing file /bu/build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h:62: warning: documented symbol 'for experimental torsion angle RDKit::DGeomHelpers::preferences' was not declared or defined. /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:1226: warning: documented symbol 'modifies molecule in RDKit::MolOps::place' was not declared or defined. /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:1242: warning: documented symbol 'modifies molecule in RDKit::MolOps::place' was not declared or defined. /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Pipeline.h:90: warning: documented symbol 'enum RDKIT_MOLSTANDARDIZE_EXPORT RDKit::MolStandardize::PipelineStatus' was not declared or defined. /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryOps.h:535: warning: Found unknown command '\overloadquery' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:80: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:135: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:209: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:84: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:139: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:213: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:77: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:132: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:206: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/QueryOps.h:526: warning: Found unknown command '\overloadquery' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:87: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:142: warning: Found unknown command '\override' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:216: warning: Found unknown command '\override' ild/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Contribs.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/DistanceConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/DistanceConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Inversion.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Inversion.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Inversions.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Inversions.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Nonbonded.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Nonbonded.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Params.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Params.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/PositionConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/PositionConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/TorsionAngle.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/TorsionAngle.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/TorsionConstraint.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/TorsionConstraint.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Utils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Utils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Numerics/Alignment/AlignPoints.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Numerics/Alignment/AlignPoints.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Numerics/Conrec.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Numerics/Conrec.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Numerics/EigenSolvers/PowerEigenSolver.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Numerics/EigenSolvers/PowerEigenSolver.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Numerics/Matrix.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Numerics/Matrix.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Numerics/Optimizer/BFGSOpt.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Numerics/Optimizer/BFGSOpt.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Numerics/SquareMatrix.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Numerics/SquareMatrix.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Numerics/SymmMatrix.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Numerics/SymmMatrix.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Numerics/Vector.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Numerics/Vector.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Geometry/Grid3D.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Geometry/Grid3D.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Geometry/GridUtils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Geometry/GridUtils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Geometry/point.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Geometry/point.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Geometry/Transform.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Geometry/Transform.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Geometry/Transform2D.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Geometry/Transform2D.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Geometry/Transform3D.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Geometry/Transform3D.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Geometry/UniformGrid3D.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Geometry/UniformGrid3D.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Geometry/UniformRealValueGrid3D.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Geometry/UniformRealValueGrid3D.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Geometry/Utils.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Geometry/Utils.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/Features/Feature.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/Features/Feature.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures/ChemicalFeature.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures/ChemicalFeature.h... Preprocessing /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures/FreeChemicalFeature.h... Parsing file /build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures/FreeChemicalFeature.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Warn for undocumented namespaces... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file Catalog.h... Generating code for file CatalogEntry.h... Generating code for file CatalogParams.h... Generating code for file ChemicalFeature.h... Generating code for file FreeChemicalFeature.h... Generating code for file MetricFuncs.h... Generating code for file MetricMatrixCalc.h... Generating code for file base64.h... Generating code for file BitOps.h... Generating code for file BitVect.h... Generating code for file BitVects.h... Generating code for file BitVectUtils.h... Generating code for file DatastructsException.h... Generating code for file DatastructsStreamOps.h... Generating code for file DiscreteDistMat.h... Generating code for file DiscreteValueVect.h... Generating code for file ExplicitBitVect.h... Generating code for file FPBReader.h... Generating code for file MultiFPBReader.h... Generating code for file RealValueVect.h... Generating code for file SparseBitVect.h... Generating code for file SparseIntVect.h... Generating code for file BoundsMatrix.h... Generating code for file ChiralSet.h... Generating code for file ChiralViolationContribs.h... Generating code for file DistGeomUtils.h... Generating code for file DistViolationContribs.h... Generating code for file FourthDimContribs.h... Generating code for file TriangleSmooth.h... Generating code for file Feature.h... Generating code for file AngleConstraints.h... Generating code for file Contrib.h... Generating code for file DistanceConstraint.h... Generating code for file DistanceConstraint.h... Generating code for file DistanceConstraint.h... Generating code for file DistanceConstraints.h... Generating code for file ForceField.h... Generating code for file AngleBend.h... Generating code for file AngleBend.h... Generating code for file AngleConstraint.h... Generating code for file AngleConstraint.h... Generating code for file AngleConstraint.h... Generating code for file BondStretch.h... Generating code for file BondStretch.h... Generating code for file Contribs.h... Generating code for file Contribs.h... Generating code for file Nonbonded.h... Generating code for file Nonbonded.h... Generating code for file OopBend.h... Generating code for file Params.h... Generating code for file Params.h... Generating code for file StretchBend.h... Generating code for file TorsionAngle.h... Generating code for file TorsionAngle.h... Generating code for file TorsionConstraint.h... Generating code for file TorsionConstraint.h... Generating code for file TorsionConstraint.h... Generating code for file PositionConstraint.h... Generating code for file PositionConstraint.h... Generating code for file PositionConstraint.h... Generating code for file Inversion.h... Generating code for file Inversions.h... Generating code for file Utils.h... Generating code for file Utils.h... Generating code for file Grid3D.h... Generating code for file GridUtils.h... Generating code for file point.h... Generating code for file Transform.h... Generating code for file Transform2D.h... Generating code for file Transform3D.h... Generating code for file UniformGrid3D.h... Generating code for file UniformRealValueGrid3D.h... Generating code for file Abbreviations.h... Generating code for file Atom.h... Generating code for file atomic_data.h... Generating code for file AtomIterators.h... Generating code for file Atropisomers.h... Generating code for file Bond.h... Generating code for file BondIterators.h... Generating code for file Canon.h... Generating code for file CartesianProduct.h... Generating code for file Enumerate.h... Generating code for file EnumerateBase.h... Generating code for file EnumerateTypes.h... Generating code for file EnumerationPickler.h... Generating code for file EnumerationStrategyBase.h... Generating code for file EvenSamplePairs.h... Generating code for file RandomSample.h... Generating code for file RandomSampleAllBBs.h... Generating code for file PreprocessRxn.h... Generating code for file Reaction.h... Generating code for file ReactionFingerprints.h... Generating code for file ReactionParser.h... Generating code for file ReactionPickler.h... Generating code for file ReactionRunner.h... Generating code for file ReactionUtils.h... Generating code for file SanitizeRxn.h... Generating code for file ChemTransforms.h... Generating code for file MolFragmenter.h... Generating code for file MolFragmenterJSONParser.h... Generating code for file Chirality.h... Generating code for file CIPLabeler.h... Generating code for file CIPMol.h... Generating code for file AtropisomerBond.h... Generating code for file Configuration.h... Generating code for file Sp2Bond.h... Generating code for file Tetrahedral.h... Generating code for file Descriptor.h... Generating code for file Digraph.h... Generating code for file Edge.h... Generating code for file Mancude.h... Generating code for file Node.h... Generating code for file Priority.h... Generating code for file Pairlist.h... Generating code for file Rule1a.h... Generating code for file Rule1b.h... Generating code for file Rule2.h... Generating code for file Rule3.h... Generating code for file Rule4a.h... Generating code for file Rule4b.h... Generating code for file Rule4c.h... Generating code for file Rule5.h... Generating code for file Rule5New.h... Generating code for file Rule6.h... Generating code for file Rules.h... Generating code for file SequenceRule.h... Generating code for file Sort.h... Generating code for file TooManyNodesException.h... Generating code for file Conformer.h... Generating code for file DepictUtils.h... Generating code for file EmbeddedFrag.h... Generating code for file RDDepictor.h... Generating code for file Templates.h... Generating code for file TemplateSmiles.h... Generating code for file Deprotect.h... Generating code for file AtomFeat.h... Generating code for file AUTOCORR2D.h... Generating code for file AUTOCORR3D.h... Generating code for file BCUT.h... Generating code for file ConnectivityDescriptors.h... Generating code for file CoulombMat.h... Generating code for file Crippen.h... Generating code for file Data3Ddescriptors.h... Generating code for file DCLV.h... Generating code for file EEM.h... Generating code for file GETAWAY.h... Generating code for file Lipinski.h... Generating code for file MolData3Ddescriptors.h... Generating code for file MolDescriptors.h... Generating code for file MolDescriptors3D.h... Generating code for file MolSurf.h... Generating code for file MORSE.h... Generating code for file MQN.h... Generating code for file OxidationNumbers.h... Generating code for file PBF.h... Generating code for file PMI.h... Generating code for file Property.h... Generating code for file RDF.h... Generating code for file RegisterDescriptor.h... Generating code for file USRDescriptor.h... Generating code for file WHIM.h... Generating code for file DetermineBonds.h... Generating code for file BoundsMatrixBuilder.h... Generating code for file Embedder.h... Generating code for file EnumerateStereoisomers.h... Generating code for file Flippers.h... Generating code for file CDXMLParser.h... Generating code for file FileParsers.h... Generating code for file FileParserUtils.h... Generating code for file FileWriters.h... Generating code for file GeneralFileReader.h... Generating code for file MaestroProperties.h... Generating code for file MolFileStereochem.h... Generating code for file MolSGroupParsing.h... Generating code for file MolSGroupWriting.h... Generating code for file MolSupplier.h... Generating code for file MolSupplier.v1API.h... Generating code for file MolWriters.h... Generating code for file MultithreadedMolSupplier.h... Generating code for file MultithreadedSDMolSupplier.h... Generating code for file MultithreadedSmilesMolSupplier.h... Generating code for file PNGParser.h... Generating code for file ProximityBonds.h... Generating code for file SequenceParsers.h... Generating code for file SequenceWriters.h... Generating code for file FilterCatalog.h... Generating code for file FilterCatalogEntry.h... Generating code for file FilterMatcherBase.h... Generating code for file FilterMatchers.h... Generating code for file Filters.h... Generating code for file FunctionalGroupHierarchy.h... Generating code for file AtomPairGenerator.h... Generating code for file AtomPairs.h... Generating code for file FingerprintGenerator.h... Generating code for file Fingerprints.h... Generating code for file FingerprintUtil.h... Generating code for file MACCS.h... Generating code for file MHFP.h... Generating code for file MorganFingerprints.h... Generating code for file MorganGenerator.h... Generating code for file RDKitFPGenerator.h... Generating code for file TopologicalTorsionGenerator.h... Generating code for file Composition2N.h... Generating code for file DebugTrace.h... Generating code for file DuplicatedSeedCache.h... Generating code for file FMCS.h... Generating code for file Graph.h... Generating code for file MatchTable.h... Generating code for file MaximumCommonSubgraph.h... Generating code for file Seed.h... Generating code for file SeedSet.h... Generating code for file SubstructMatchCustom.h... Generating code for file SubstructureCache.h... Generating code for file Target.h... Generating code for file TargetMatch.h... Generating code for file TorsionAngleContribs.h... Generating code for file TorsionAngleM6.h... Generating code for file TorsionPreferences.h... Generating code for file FFConvenience.h... Generating code for file AtomTyper.h... Generating code for file AtomTyper.h... Generating code for file Builder.h... Generating code for file Builder.h... Generating code for file MMFF.h... Generating code for file UFF.h... Generating code for file FragCatalogEntry.h... Generating code for file FragCatalogUtils.h... Generating code for file FragCatGenerator.h... Generating code for file FragCatParams.h... Generating code for file FragFPGenerator.h... Generating code for file XQMol.h... Generating code for file GenericGroups.h... Generating code for file GraphMol.h... Generating code for file MarvinDefs.h... Generating code for file MarvinParser.h... Generating code for file MMPA.h... Generating code for file AlignMolecules.h... Generating code for file O3AAlignMolecules.h... Generating code for file MolBundle.h... Generating code for file MolCatalog.h... Generating code for file MolCatalogEntry.h... Generating code for file MolCatalogParams.h... Generating code for file FeatureParser.h... Generating code for file MolChemicalFeature.h... Generating code for file MolChemicalFeatureDef.h... Generating code for file MolChemicalFeatureFactory.h... Generating code for file AtomSymbol.h... Generating code for file DrawAnnotation.h... Generating code for file DrawMol.h... Generating code for file DrawMolMCH.h... Generating code for file DrawMolMCHCircleAndLine.h... Generating code for file DrawMolMCHLasso.h... Generating code for file DrawShape.h... Generating code for file DrawText.h... Generating code for file DrawTextCairo.h... Generating code for file DrawTextFT.h... Generating code for file DrawTextFTCairo.h... Generating code for file DrawTextFTJS.h... Generating code for file DrawTextFTSVG.h... Generating code for file DrawTextJS.h... Generating code for file DrawTextNotFT.h... Generating code for file DrawTextSVG.h... Generating code for file roboto_regular.h... Generating code for file telex_regular.h... Generating code for file MolDraw2D.h... Generating code for file MolDraw2DCairo.h... Generating code for file MolDraw2DDetails.h... Generating code for file MolDraw2DHelpers.h... Generating code for file MolDraw2DJS.h... Generating code for file MolDraw2DSVG.h... Generating code for file MolDraw2DUtils.h... Generating code for file MolDraw2Dwx.h... Generating code for file DrawTextFTQt.h... Generating code for file DrawTextQt.h... Generating code for file MolDraw2DQt.h... Generating code for file StringRect.h... Generating code for file LinkNode.h... Generating code for file MolEnumerator.h... Generating code for file mf.h... Generating code for file MolHash.h... Generating code for file nmmolhash.h... Generating code for file MIFDescriptors.h... Generating code for file details.h... Generating code for file details.h... Generating code for file MolInterchange.h... Generating code for file MolOps.h... Generating code for file MolPickler.h... Generating code for file MolProcessing.h... Generating code for file AcidBaseCatalogEntry.h... Generating code for file AcidBaseCatalogParams.h... Generating code for file AcidBaseCatalogUtils.h... Generating code for file Charge.h... Generating code for file Fragment.h... Generating code for file FragmentCatalogEntry.h... Generating code for file FragmentCatalogParams.h... Generating code for file FragmentCatalogUtils.h... Generating code for file Metal.h... Generating code for file MolStandardize.h... Generating code for file Normalize.h... Generating code for file Pipeline.h... Generating code for file Tautomer.h... Generating code for file Tautomer.h... Generating code for file TautomerCatalogEntry.h... Generating code for file TautomerCatalogParams.h... Generating code for file TautomerCatalogUtils.h... Generating code for file TransformCatalogEntry.h... Generating code for file TransformCatalogParams.h... Generating code for file TransformCatalogUtils.h... Generating code for file Validate.h... Generating code for file MolTransforms.h... Generating code for file MonomerInfo.h... Generating code for file new_canon.h... Generating code for file GasteigerCharges.h... Generating code for file GasteigerParams.h... Generating code for file PeriodicTable.h... Generating code for file QueryAtom.h... Generating code for file QueryBond.h... Generating code for file QueryOps.h... Generating code for file PartitionSet.h... Generating code for file RascalClusterOptions.h... Generating code for file RascalDetails.h... Generating code for file RascalMCES.h... Generating code for file RascalOptions.h... Generating code for file RascalResult.h... Generating code for file RDKitBase.h... Generating code for file RDKitQueries.h... Generating code for file ReducedGraphs.h... Generating code for file Resonance.h... Generating code for file RGroupCore.h... Generating code for file RGroupData.h... Generating code for file RGroupDecomp.h... Generating code for file RGroupDecompData.h... Generating code for file RGroupDecompJSONParsers.h... Generating code for file RGroupDecompParams.h... Generating code for file RGroupFingerprintScore.h... Generating code for file RGroupGa.h... Generating code for file RGroupMatch.h... Generating code for file RGroupScore.h... Generating code for file RGroupUtils.h... Generating code for file RingInfo.h... Generating code for file Rings.h... Generating code for file ROMol.h... Generating code for file RWMol.h... Generating code for file SanitException.h... Generating code for file detail.h... Generating code for file ScaffoldNetwork.h... Generating code for file ShapeEncoder.h... Generating code for file ShapeUtils.h... Generating code for file SLNAttribs.h... Generating code for file SLNParse.h... Generating code for file SLNParseOps.h... Generating code for file CanonicalizeStereoGroups.h... Generating code for file SmartsWrite.h... Generating code for file SmilesJSONParsers.h... Generating code for file SmilesParse.h... Generating code for file SmilesParseOps.h... Generating code for file SmilesWrite.h... Generating code for file StereoGroup.h... Generating code for file Pattern.h... Generating code for file ReCharge.h... Generating code for file Stereo.h... Generating code for file StripSmallFragments.h... Generating code for file StructChecker.h... Generating code for file StructCheckerOptions.h... Generating code for file Utilites.h... Generating code for file Subgraphs.h... Generating code for file SubgraphUtils.h... Generating code for file SubstanceGroup.h... Generating code for file SubstructMatch.h... Generating code for file SubstructUtils.h... Generating code for file PatternFactory.h... Generating code for file SubstructLibrary.h... Generating code for file SubstructLibrarySerialization.h... Generating code for file MemoryMappedFileReader.h... Generating code for file SearchResults.h... Generating code for file Synthon.h... Generating code for file SynthonSet.h... Generating code for file SynthonSpace.h... Generating code for file SynthonSpaceFingerprintSearcher.h... Generating code for file SynthonSpaceHitSet.h... Generating code for file SynthonSpaceRascalSearcher.h... Generating code for file SynthonSpaceSearch_details.h... Generating code for file SynthonSpaceSearcher.h... Generating code for file SynthonSpaceSubstructureSearcher.h... Generating code for file TautomerQuery.h... Generating code for file Snapshot.h... Generating code for file Trajectory.h... Generating code for file CorrMatGenerator.h... Generating code for file InfoBitRanker.h... Generating code for file InfoGainFuncs.h... Generating code for file AlignPoints.h... Generating code for file Conrec.h... Generating code for file PowerEigenSolver.h... Generating code for file Matrix.h... Generating code for file BFGSOpt.h... Generating code for file SquareMatrix.h... Generating code for file SymmMatrix.h... Generating code for file Vector.h... Generating code for file AndQuery.h... Generating code for file EqualityQuery.h... Generating code for file GreaterEqualQuery.h... Generating code for file GreaterQuery.h... Generating code for file LessEqualQuery.h... Generating code for file LessQuery.h... Generating code for file NullQueryAlgebra.h... Generating code for file OrQuery.h... Generating code for file Query.h... Generating code for file QueryObjects.h... Generating code for file RangeQuery.h... Generating code for file SetQuery.h... Generating code for file XOrQuery.h... Generating code for file boost_numpy.h... Generating code for file import_array.h... Generating code for file pyint_api.h... Generating code for file PySequenceHolder.h... Generating code for file python.h... Generating code for file python_streambuf.h... Generating code for file BadFileException.h... Generating code for file BetterEnums.h... Generating code for file BoostEndInclude.h... Generating code for file BoostStartInclude.h... Generating code for file ConcurrentQueue.h... Generating code for file ControlCHandler.h... Generating code for file Dict.h... Generating code for file enum.h... Generating code for file Exceptions.h... Generating code for file export.h... Generating code for file FileParseException.h... Generating code for file hanoiSort.h... Generating code for file Invariant.h... Generating code for file LocaleSwitcher.h... Generating code for file Ranking.h... Generating code for file RDAny.h... Generating code for file RDConfig.h... Generating code for file RDExportMacros.h... Generating code for file RDLog.h... Generating code for file RDProps.h... Generating code for file RDThreads.h... Generating code for file RDValue-doublemagic.h... Generating code for file RDValue-taggedunion.h... Generating code for file RDValue.h... Generating code for file StreamOps.h... Generating code for file types.h... Generating code for file utils.h... Generating code for file versions.h... Generating code for file DistPicker.h... Generating code for file HierarchicalClusterPicker.h... Generating code for file LeaderPicker.h... Generating code for file MaxMinPicker.h... Generating file documentation... Generating docs for file Catalog.h... Generating docs for file CatalogEntry.h... Generating docs for file CatalogParams.h... Generating docs for file ChemicalFeature.h... Generating docs for file FreeChemicalFeature.h... Generating docs for file MetricFuncs.h... Generating docs for file MetricMatrixCalc.h... Generating docs for file base64.h... Generating docs for file BitOps.h... Generating docs for file BitVect.h... Generating docs for file BitVects.h... Generating docs for file BitVectUtils.h... Generating docs for file DatastructsException.h... Generating docs for file DatastructsStreamOps.h... Generating docs for file DiscreteDistMat.h... Generating docs for file DiscreteValueVect.h... Generating docs for file ExplicitBitVect.h... Generating docs for file FPBReader.h... Generating docs for file MultiFPBReader.h... Generating docs for file RealValueVect.h... Generating docs for file SparseBitVect.h... Generating docs for file SparseIntVect.h... Generating docs for file BoundsMatrix.h... Generating docs for file ChiralSet.h... Generating docs for file ChiralViolationContribs.h... Generating docs for file DistGeomUtils.h... Generating docs for file DistViolationContribs.h... Generating docs for file FourthDimContribs.h... Generating docs for file TriangleSmooth.h... Generating docs for file Feature.h... Generating docs for file AngleConstraints.h... Generating docs for file Contrib.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistanceConstraints.h... Generating docs for file ForceField.h... Generating docs for file AngleBend.h... Generating docs for file AngleBend.h... Generating docs for file AngleConstraint.h... Generating docs for file AngleConstraint.h... Generating docs for file AngleConstraint.h... Generating docs for file BondStretch.h... Generating docs for file BondStretch.h... Generating docs for file Contribs.h... Generating docs for file Contribs.h... Generating docs for file Nonbonded.h... Generating docs for file Nonbonded.h... Generating docs for file OopBend.h... Generating docs for file Params.h... Generating docs for file Params.h... Generating docs for file StretchBend.h... Generating docs for file TorsionAngle.h... Generating docs for file TorsionAngle.h... Generating docs for file TorsionConstraint.h... Generating docs for file TorsionConstraint.h... Generating docs for file TorsionConstraint.h... Generating docs for file PositionConstraint.h... Generating docs for file PositionConstraint.h... Generating docs for file PositionConstraint.h... Generating docs for file Inversion.h... Generating docs for file Inversions.h... Generating docs for file Utils.h... Generating docs for file Utils.h... Generating docs for file Grid3D.h... Generating docs for file GridUtils.h... Generating docs for file point.h... Generating docs for file Transform.h... Generating docs for file Transform2D.h... Generating docs for file Transform3D.h... Generating docs for file UniformGrid3D.h... Generating docs for file UniformRealValueGrid3D.h... Generating docs for file Abbreviations.h... Generating docs for file Atom.h... Generating docs for file atomic_data.h... Generating docs for file AtomIterators.h... Generating docs for file Atropisomers.h... Generating docs for file Bond.h... Generating docs for file BondIterators.h... Generating docs for file Canon.h... Generating docs for file CartesianProduct.h... Generating docs for file Enumerate.h... Generating docs for file EnumerateBase.h... Generating docs for file EnumerateTypes.h... Generating docs for file EnumerationPickler.h... Generating docs for file EnumerationStrategyBase.h... Generating docs for file EvenSamplePairs.h... Generating docs for file RandomSample.h... Generating docs for file RandomSampleAllBBs.h... Generating docs for file PreprocessRxn.h... Generating docs for file Reaction.h... Generating docs for file ReactionFingerprints.h... Generating docs for file ReactionParser.h... Generating docs for file ReactionPickler.h... Generating docs for file ReactionRunner.h... Generating docs for file ReactionUtils.h... Generating docs for file SanitizeRxn.h... Generating docs for file ChemTransforms.h... Generating docs for file MolFragmenter.h... Generating docs for file MolFragmenterJSONParser.h... Generating docs for file Chirality.h... Generating docs for file CIPLabeler.h... Generating docs for file CIPMol.h... Generating docs for file AtropisomerBond.h... Generating docs for file Configuration.h... Generating docs for file Sp2Bond.h... Generating docs for file Tetrahedral.h... Generating docs for file Descriptor.h... Generating docs for file Digraph.h... Generating docs for file Edge.h... Generating docs for file Mancude.h... Generating docs for file Node.h... Generating docs for file Priority.h... Generating docs for file Pairlist.h... Generating docs for file Rule1a.h... Generating docs for file Rule1b.h... Generating docs for file Rule2.h... Generating docs for file Rule3.h... Generating docs for file Rule4a.h... Generating docs for file Rule4b.h... Generating docs for file Rule4c.h... Generating docs for file Rule5.h... Generating docs for file Rule5New.h... Generating docs for file Rule6.h... Generating docs for file Rules.h... Generating docs for file SequenceRule.h... Generating docs for file Sort.h... Generating docs for file TooManyNodesException.h... Generating docs for file Conformer.h... Generating docs for file DepictUtils.h... Generating docs for file EmbeddedFrag.h... Generating docs for file RDDepictor.h... Generating docs for file Templates.h... Generating docs for file TemplateSmiles.h... Generating docs for file Deprotect.h... Generating docs for file AtomFeat.h... Generating docs for file AUTOCORR2D.h... Generating docs for file AUTOCORR3D.h... Generating docs for file BCUT.h... Generating docs for file ConnectivityDescriptors.h... Generating docs for file CoulombMat.h... Generating docs for file Crippen.h... Generating docs for file Data3Ddescriptors.h... Generating docs for file DCLV.h... Generating docs for file EEM.h... Generating docs for file GETAWAY.h... Generating docs for file Lipinski.h... Generating docs for file MolData3Ddescriptors.h... Generating docs for file MolDescriptors.h... Generating docs for file MolDescriptors3D.h... Generating docs for file MolSurf.h... Generating docs for file MORSE.h... Generating docs for file MQN.h... Generating docs for file OxidationNumbers.h... Generating docs for file PBF.h... Generating docs for file PMI.h... Generating docs for file Property.h... Generating docs for file RDF.h... Generating docs for file RegisterDescriptor.h... Generating docs for file USRDescriptor.h... Generating docs for file WHIM.h... Generating docs for file DetermineBonds.h... Generating docs for file BoundsMatrixBuilder.h... Generating docs for file Embedder.h... Generating docs for file EnumerateStereoisomers.h... Generating docs for file Flippers.h... Generating docs for file CDXMLParser.h... Generating docs for file FileParsers.h... Generating docs for file FileParserUtils.h... Generating docs for file FileWriters.h... Generating docs for file GeneralFileReader.h... Generating docs for file MaestroProperties.h... Generating docs for file MolFileStereochem.h... Generating docs for file MolSGroupParsing.h... Generating docs for file MolSGroupWriting.h... Generating docs for file MolSupplier.h... Generating docs for file MolSupplier.v1API.h... Generating docs for file MolWriters.h... Generating docs for file MultithreadedMolSupplier.h... Generating docs for file MultithreadedSDMolSupplier.h... Generating docs for file MultithreadedSmilesMolSupplier.h... Generating docs for file PNGParser.h... Generating docs for file ProximityBonds.h... Generating docs for file SequenceParsers.h... Generating docs for file SequenceWriters.h... Generating docs for file FilterCatalog.h... Generating docs for file FilterCatalogEntry.h... Generating docs for file FilterMatcherBase.h... Generating docs for file FilterMatchers.h... Generating docs for file Filters.h... Generating docs for file FunctionalGroupHierarchy.h... Generating docs for file AtomPairGenerator.h... Generating docs for file AtomPairs.h... Generating docs for file FingerprintGenerator.h... Generating docs for file Fingerprints.h... Generating docs for file FingerprintUtil.h... Generating docs for file MACCS.h... Generating docs for file MHFP.h... Generating docs for file MorganFingerprints.h... Generating docs for file MorganGenerator.h... Generating docs for file RDKitFPGenerator.h... Generating docs for file TopologicalTorsionGenerator.h... Generating docs for file Composition2N.h... Generating docs for file DebugTrace.h... Generating docs for file DuplicatedSeedCache.h... Generating docs for file FMCS.h... Generating docs for file Graph.h... Generating docs for file MatchTable.h... Generating docs for file MaximumCommonSubgraph.h... Generating docs for file Seed.h... Generating docs for file SeedSet.h... Generating docs for file SubstructMatchCustom.h... Generating docs for file SubstructureCache.h... Generating docs for file Target.h... Generating docs for file TargetMatch.h... Generating docs for file TorsionAngleContribs.h... Generating docs for file TorsionAngleM6.h... Generating docs for file TorsionPreferences.h... Generating docs for file FFConvenience.h... Generating docs for file AtomTyper.h... Generating docs for file AtomTyper.h... Generating docs for file Builder.h... Generating docs for file Builder.h... Generating docs for file MMFF.h... Generating docs for file UFF.h... Generating docs for file FragCatalogEntry.h... Generating docs for file FragCatalogUtils.h... Generating docs for file FragCatGenerator.h... Generating docs for file FragCatParams.h... Generating docs for file FragFPGenerator.h... Generating docs for file XQMol.h... Generating docs for file GenericGroups.h... Generating docs for file GraphMol.h... Generating docs for file MarvinDefs.h... Generating docs for file MarvinParser.h... Generating docs for file MMPA.h... Generating docs for file AlignMolecules.h... Generating docs for file O3AAlignMolecules.h... Generating docs for file MolBundle.h... Generating docs for file MolCatalog.h... Generating docs for file MolCatalogEntry.h... Generating docs for file MolCatalogParams.h... Generating docs for file FeatureParser.h... Generating docs for file MolChemicalFeature.h... Generating docs for file MolChemicalFeatureDef.h... Generating docs for file MolChemicalFeatureFactory.h... Generating docs for file AtomSymbol.h... Generating docs for file DrawAnnotation.h... Generating docs for file DrawMol.h... Generating docs for file DrawMolMCH.h... Generating docs for file DrawMolMCHCircleAndLine.h... Generating docs for file DrawMolMCHLasso.h... Generating docs for file DrawShape.h... Generating docs for file DrawText.h... Generating docs for file DrawTextCairo.h... Generating docs for file DrawTextFT.h... Generating docs for file DrawTextFTCairo.h... Generating docs for file DrawTextFTJS.h... Generating docs for file DrawTextFTSVG.h... Generating docs for file DrawTextJS.h... Generating docs for file DrawTextNotFT.h... Generating docs for file DrawTextSVG.h... Generating docs for file roboto_regular.h... Generating docs for file telex_regular.h... Generating docs for file MolDraw2D.h... Generating docs for file MolDraw2DCairo.h... Generating docs for file MolDraw2DDetails.h... Generating docs for file MolDraw2DHelpers.h... Generating docs for file MolDraw2DJS.h... Generating docs for file MolDraw2DSVG.h... Generating docs for file MolDraw2DUtils.h... Generating docs for file MolDraw2Dwx.h... Generating docs for file DrawTextFTQt.h... Generating docs for file DrawTextQt.h... Generating docs for file MolDraw2DQt.h... Generating docs for file StringRect.h... Generating docs for file LinkNode.h... Generating docs for file MolEnumerator.h... Generating docs for file mf.h... Generating docs for file MolHash.h... Generating docs for file nmmolhash.h... Generating docs for file MIFDescriptors.h... Generating docs for file details.h... Generating docs for file details.h... Generating docs for file MolInterchange.h... Generating docs for file MolOps.h... Generating docs for file MolPickler.h... Generating docs for file MolProcessing.h... Generating docs for file AcidBaseCatalogEntry.h... Generating docs for file AcidBaseCatalogParams.h... Generating docs for file AcidBaseCatalogUtils.h... Generating docs for file Charge.h... Generating docs for file Fragment.h... Generating docs for file FragmentCatalogEntry.h... Generating docs for file FragmentCatalogParams.h... Generating docs for file FragmentCatalogUtils.h... Generating docs for file Metal.h... Generating docs for file MolStandardize.h... Generating docs for file Normalize.h... Generating docs for file Pipeline.h... Generating docs for file Tautomer.h... Generating docs for file Tautomer.h... Generating docs for file TautomerCatalogEntry.h... Generating docs for file TautomerCatalogParams.h... Generating docs for file TautomerCatalogUtils.h... Generating docs for file TransformCatalogEntry.h... Generating docs for file TransformCatalogParams.h... Generating docs for file TransformCatalogUtils.h... Generating docs for file Validate.h... Generating docs for file MolTransforms.h... Generating docs for file MonomerInfo.h... Generating docs for file new_canon.h... Generating docs for file GasteigerCharges.h... Generating docs for file GasteigerParams.h... Generating docs for file PeriodicTable.h... Generating docs for file QueryAtom.h... Generating docs for file QueryBond.h... Generating docs for file QueryOps.h... Generating docs for file PartitionSet.h... Generating docs for file RascalClusterOptions.h... Generating docs for file RascalDetails.h... Generating docs for file RascalMCES.h... Generating docs for file RascalOptions.h... Generating docs for file RascalResult.h... Generating docs for file RDKitBase.h... Generating docs for file RDKitQueries.h... Generating docs for file ReducedGraphs.h... Generating docs for file Resonance.h... Generating docs for file RGroupCore.h... Generating docs for file RGroupData.h... Generating docs for file RGroupDecomp.h... Generating docs for file RGroupDecompData.h... Generating docs for file RGroupDecompJSONParsers.h/build/reproducible-path/rdkit-202503.6/Code/DistGeom/DistGeomUtils.h:93: warning: The following parameter of DistGeom::constructForceField(const BoundsMatrix &mmat, RDGeom::PointPtrVect &positions, const VECT_CHIRALSET &csets, double weightChiral=1.0, double weightFourthDim=0.1, std::map< std::pair< int, int >, double > *extraWeights=nullptr, double basinSizeTol=5.0, boost::dynamic_bitset<> *fixedPts=nullptr) is not documented: parameter 'fixedPts' /build/reproducible-path/rdkit-202503.6/Code/DistGeom/ChiralViolationContribs.h:53: warning: argument 'cset' of command @param is not found in the argument list of DistGeom::ChiralViolationContribs::ChiralViolationContribs(ForceFields::ForceField *owner) /build/reproducible-path/rdkit-202503.6/Code/DistGeom/ChiralViolationContribs.h:53: warning: argument 'weight' of command @param is not found in the argument list of DistGeom::ChiralViolationContribs::ChiralViolationContribs(ForceFields::ForceField *owner) ... Generating docs for file RGroupDecompParams.h... Generating docs for file RGroupFingerprintScore.h... Generating docs for file RGroupGa.h... Generating docs for file RGroupMatch.h... Generating docs for file RGroupScore.h... Generating docs for file RGroupUtils.h... Generating docs for file RingInfo.h... Generating docs for file Rings.h... Generating docs for file ROMol.h... Generating docs for file RWMol.h... Generating docs for file SanitException.h... Generating docs for file detail.h... Generating docs for file ScaffoldNetwork.h... Generating docs for file ShapeEncoder.h... Generating docs for file ShapeUtils.h... Generating docs for file SLNAttribs.h... Generating docs for file SLNParse.h... Generating docs for file SLNParseOps.h... Generating docs for file CanonicalizeStereoGroups.h... Generating docs for file SmartsWrite.h... Generating docs for file SmilesJSONParsers.h... Generating docs for file SmilesParse.h... Generating docs for file SmilesParseOps.h... Generating docs for file SmilesWrite.h... Generating docs for file StereoGroup.h... Generating docs for file Pattern.h... Generating docs for file ReCharge.h... Generating docs for file Stereo.h... Generating docs for file StripSmallFragments.h... Generating docs for file StructChecker.h... Generating docs for file StructCheckerOptions.h... Generating docs for file Utilites.h... Generating docs for file Subgraphs.h... Generating docs for file SubgraphUtils.h... Generating docs for file SubstanceGroup.h... Generating docs for file SubstructMatch.h... Generating docs for file SubstructUtils.h... Generating docs for file PatternFactory.h... Generating docs for file SubstructLibrary.h... Generating docs for file SubstructLibrarySerialization.h... Generating docs for file MemoryMappedFileReader.h... Generating docs for file SearchResults.h... Generating docs for file Synthon.h... Generating docs for file SynthonSet.h... Generating docs for file SynthonSpace.h... Generating docs for file SynthonSpaceFingerprintSearcher.h... Generating docs for file SynthonSpaceHitSet.h... Generating docs for file SynthonSpaceRascalSearcher.h... Generating docs for file SynthonSpaceSearch_details.h... Generating docs for file SynthonSpaceSearcher.h... Generating docs for file SynthonSpaceSubstructureSearcher.h... Generating docs for file TautomerQuery.h... Generating docs for file Snapshot.h... Generating docs for file Trajectory.h... Generating docs for file CorrMatGenerator.h... Generating docs for file InfoBitRanker.h... Generating docs for file InfoGainFuncs.h... Generating docs for file AlignPoints.h... Generating docs for file Conrec.h... Generating docs for file PowerEigenSolver.h... Generating docs for file Matrix.h... Generating docs for file BFGSOpt.h... Generating docs for file SquareMatrix.h... Generating docs for file SymmMatrix.h... Generating docs for file Vector.h... Generating docs for file AndQuery.h... Generating docs for file EqualityQuery.h... Generating docs for file GreaterEqualQuery.h... Generating docs for file GreaterQuery.h... Generating docs for file LessEqualQuery.h... Generating docs for file LessQuery.h... Generating docs for file NullQueryAlgebra.h... Generating docs for file OrQuery.h... Generating docs for file Query.h... Generating docs for file QueryObjects.h... Generating docs for file RangeQuery.h... Generating docs for file SetQuery.h... Generating docs for file XOrQuery.h... Generating docs for file boost_numpy.h... Generating docs for file import_array.h... Generating docs for file pyint_api.h... Generating docs for file PySequenceHolder.h... Generating docs for file python.h... Generating docs for file python_streambuf.h... Generating docs for file BadFileException.h... Generating docs for file BetterEnums.h... Generating docs for file BoostEndInclude.h... Generating docs for file BoostStartInclude.h... Generating docs for file ConcurrentQueue.h... Generating docs for file ControlCHandler.h... Generating docs for file Dict.h... Generating docs for file enum.h... Generating docs for file Exceptions.h... Generating docs for file export.h... Generating docs for file FileParseException.h... Generating docs for file hanoiSort.h... Generating docs for file Invariant.h... Generating docs for file LocaleSwitcher.h... Generating docs for file Ranking.h... Generating docs for file RDAny.h... Generating docs for file RDConfig.h... Generating docs for file RDExportMacros.h... Generating docs for file RDLog.h... Generating docs for file RDProps.h... Generating docs for file RDThreads.h... Generating docs for file RDValue-doublemagic.h... Generating docs for file RDValue-taggedunion.h... Generating docs for file RDValue.h... Generating docs for file StreamOps.h... Generating docs for file types.h... Generating docs for file utils.h... Generating docs for file versions.h... Generating docs for file DistPicker.h... Generating docs for file HierarchicalClusterPicker.h... Generating docs for file LeaderPicker.h... Generating docs for file MaxMinPicker.h... Generating page documentation... Generating docs for page deprecated... Generating group documentation... Generating class documentation... Generating docs for compound BitVect... Generating docs for compound Data3Ddescriptors... Generating docs for compound DatastructsException... Generating docs for compound ExplicitBitVect... Generating docs for compound IndexErrorException... Generating docs for compound KeyErrorException... Generating docs for compound MolData3Ddescriptors... Generating docs for compound Point2D... Generating docs for compound PySequenceHolder< T >... Generating docs for compound set< K >... Generating docs for nested compound set< K >::iterator... Generating docs for nested compound set< K >::const_iterator... Generating docs for nested compound set< K >::reverse_iterator... Generating docs for nested compound set< K >::const_reverse_iterator... Generating docs for compound SparseBitVect... Generating docs for compound ValueErrorException... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace better_enums Generating docs for compound better_enums::optional< T >... Generating docs for compound better_enums::_eat_assign< EnumType >... Generating docs for compound better_enums::_iterable< Element >... Generating docs for compound better_enums::_initialize_at_program_start< Enum >... Generating docs for compound better_enums::map_compare< T >... Generating docs for compound better_enums::map_compare< const char * >... Generating docs for compound better_enums::map_compare< const wchar_t * >... Generating docs for compound better_enums::map< Enum, T, Compare >... Generating docs for namespace BFGSOpt Generating docs for namespace boost Generating docs for namespace boost::logging Generating docs for compound boost::logging::rdLogger... Generating docs for namespace boost_adaptbx Generating docs for namespace boost_adaptbx::python Generating docs for compound boost_adaptbx::python::streambuf... Generating docs for nested compound boost_adaptbx::python::streambuf::istream... Generating docs for nested compound boost_adaptbx::python::streambuf::ostream... Generating docs for compound boost_adaptbx::python::streambuf_capsule... Generating docs for compound boost_adaptbx::python::ostream... Generating docs for namespace ChemicalFeatures Generating docs for compound ChemicalFeatures::ChemicalFeature... Generating docs for compound ChemicalFeatures::FreeChemicalFeature... Generating docs for namespace conrec Generating docs for compound conrec::ConrecSegment... Generating docs for compound conrec::tplHash... Generating docs for namespace DistGeom Generating docs for compound DistGeom::BoundsMatrix... Generating docs for compound DistGeom::ChiralSet... Generating docs for compound DistGeom::ChiralViolationContribsParams... Generating docs for compound DistGeom::ChiralViolationContribs... Generating docs for compound DistGeom::DistViolationContribsParams... Generating docs for compound DistGeom::DistViolationContribs... Generating docs for compound DistGeom::FourthDimContribsParams... Generating docs for compound DistGeom::Fo/build/reproducible-path/rdkit-202503.6/Code/DistGeom/FourthDimContribs.h:36: warning: argument 'idx' of command @param is not found in the argument list of DistGeom::FourthDimContribs::FourthDimContribs(ForceFields::ForceField *owner) /build/reproducible-path/rdkit-202503.6/Code/DistGeom/FourthDimContribs.h:36: warning: argument 'weight' of command @param is not found in the argument list of DistGeom::FourthDimContribs::FourthDimContribs(ForceFields::ForceField *owner) /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraint.h:24: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraint.h:24: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraint.h:24: warning: The following parameters of ForceFields::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraints.h:65: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::AngleConstraintContribs::addContrib(unsigned int idx1, unsigned int idx2, unsigned int idx3, bool relative, double minAngleDeg, double maxAngleDeg, double forceConst) /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraints.h:65: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::AngleConstraintContribs::addContrib(unsigned int idx1, unsigned int idx2, unsigned int idx3, bool relative, double minAngleDeg, double maxAngleDeg, double forceConst) /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraints.h:65: warning: The following parameters of ForceFields::AngleConstraintContribs::addContrib(unsigned int idx1, unsigned int idx2, unsigned int idx3, bool relative, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraints.h:53: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::AngleConstraintContribs::addContrib(unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraints.h:53: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::AngleConstraintContribs::addContrib(unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/reproducible-path/rdkit-202503.6/Code/ForceField/AngleConstraints.h:53: warning: The following parameters of ForceFields::AngleConstraintContribs::addContrib(unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' /build/reproducible-path/rdkit-202503.6/Code/ForceField/DistanceConstraints.h:61: warning: argument 'forceConst' of command @param is not found in the argument list of ForceFields::DistanceConstraintContribs::addContrib(unsigned int idx1, unsigned int idx2, bool relative, double minLen, double maxLen, double forceConstant) /build/reproducible-path/rdkit-202503.6/Code/ForceField/DistanceConstraints.h:61: warning: The following parameter of ForceFields::DistanceConstraintContribs::addContrib(unsigned int idx1, unsigned int idx2, bool relative, double minLen, double maxLen, double forceConstant) is not documented: parameter 'forceConstant' /build/reproducible-path/rdkit-202503.6/Code/ForceField/DistanceConstraints.h:50: warning: argument 'forceConst' of command @param is not found in the argument list of ForceFields::DistanceConstraintContribs::addContrib(unsigned int idx1, unsigned int idx2, double minLen, double maxLen, double forceConstant) /build/reproducible-path/rdkit-202503.6/Code/ForceField/DistanceConstraints.h:50: warning: The following parameter of ForceFields::DistanceConstraintContribs::addContrib(unsigned int idx1, unsigned int idx2, double minLen, double maxLen, double forceConstant) is not documented: parameter 'forceConstant' /build/reproducible-path/rdkit-202503.6/Code/ForceField/ForceField.h:159: warning: argument 'snapshotFreq' of command @param is not found in the argument list of ForceFields::ForceField::minimize(unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) /build/reproducible-path/rdkit-202503.6/Code/ForceField/ForceField.h:159: warning: argument 'snapshotVect' of command @param is not found in the argument list of ForceFields::ForceField::minimize(unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) /build/reproducible-path/rdkit-202503.6/Code/ForceField/ForceField.h:144: warning: The following parameters of ForceFields::ForceField::minimize(unsigned int snapshotFreq, RDKit::SnapshotVect *snapshotVect, unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) are not documented: parameter 'snapshotFreq' parameter 'snapshotVect' /build/reproducible-path/rdkit-202503.6/Code/ForceField/PositionConstraint.h:25: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst) /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/AngleBend.h:28: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::AngleBendContrib::addTerm(unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/AngleBend.h:28: warning: The following parameters of ForceFields::MMFF::AngleBendContrib::addTerm(unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) are not documented: parameter 'mmffAngleParams' parameter 'mmffPropParamsCentralAtom' /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/BondStretch.h:27: warning: argument 'bondType' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::addTerm(const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/BondStretch.h:27: warning: argument 'end1Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::addTerm(const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/BondStretch.h:27: warning: argument 'end2Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::addTerm(const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/BondStretch.h:27: warning: The following parameter of ForceFields::MMFF::BondStretchContrib::addTerm(const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) is not documented: parameter 'mmffBondParams' /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/Nonbonded.h:81: warning: argument 'idx1' of command @param is not found in the argument list of ForceFields::MMFF::EleContrib::EleContrib(ForceField *owner) /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/Nonbonded.h:81: warning: argument 'idx2' of command @param is not found in the argument list of ForceFields::MMFF::EleContrib::EleContrib(ForceField *owner) /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/OopBend.h:26: warning: The following parameter of ForceFields::MMFF::OopBendContrib::addTerm(unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFOop *mmffOopParams) is not documented: parameter 'mmffOopParams' /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/StretchBend.h:32: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::StretchBendContrib::addTerm(const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/StretchBend.h:32: warning: The following parameters of ForceFields::MMFF::StretchBendContrib::addTerm(const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) are not documented: parameter 'mmffStbnParams' parameter 'mmffAngleParams' parameter 'mmffBondParams1' parameter 'mmffBondParams2' /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/TorsionAngle.h:33: warning: argument 'torsionType' of command @param is not found in the argument list of ForceFields::MMFF::TorsionAngleContrib::addTerm(unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/TorsionAngle.h:33: warning: The following parameter of ForceFields::MMFF::TorsionAngleContrib::addTerm(unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) is not documented: parameter 'mmffTorParams' /build/reproducible-path/rdkit-202503.6/Code/ForceField/UFF/Inversion.h:27: warning: The following parameter of ForceFields::UFF::InversionContrib::InversionContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, int at2AtomicNum, bool isCBoundToO, double oobForceScalingFactor=1.0) is not documented: parameter 'oobForceScalingFactor' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/RDDepictor.h:393: warning: argument 'refPattern' of command @param is not found in the argument list of RDDepict::generateDepictionMatching3DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=nullptr, bool acceptFailure=false, bool forceRDKit=false) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/RDDepictor.h:393: warning: The following parameter of RDDepict::generateDepictionMatching3DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=nullptr, bool acceptFailure=false, bool forceRDKit=false) is not documented: parameter 'referencePattern' urthDimContribs... Generating docs for namespace ForceFields Generating docs for compound ForceFields::AngleConstraintContrib... Generating docs for compound ForceFields::AngleConstraintContribsParams... Generating docs for compound ForceFields::AngleConstraintContribs... Generating docs for compound ForceFields::ForceFieldContrib... Generating docs for compound ForceFields::DistanceConstraintContrib... Generating docs for compound ForceFields::DistanceConstraintContribsParams... Generating docs for compound ForceFields::DistanceConstraintContribs... Generating docs for compound ForceFields::ForceField... Generating docs for compound ForceFields::PositionConstraintContrib... Generating docs for compound ForceFields::TorsionConstraintContrib... Generating docs for namespace ForceFields::CrystalFF Generating docs for compound ForceFields::CrystalFF::TorsionAngleContribsParams... Generating docs for compound ForceFields::CrystalFF::TorsionAngleContribs... Generating docs for compound ForceFields::CrystalFF::TorsionAngleContribM6... Generating docs for compound ForceFields::CrystalFF::ExpTorsionAngle... Generating docs for compound ForceFields::CrystalFF::CrystalFFDetails... Generating docs for namespace ForceFields::MMFF Generating docs for compound ForceFields::MMFF::AngleBendContrib... Generating docs for compound ForceFields::MMFF::BondStretchContrib... Generating docs for compound ForceFields::MMFF::NonbondedContrib... Generating docs for compound ForceFields::MMFF::VdWContrib... Generating docs for compound ForceFields::MMFF::EleContrib... Generating docs for compound ForceFields::MMFF::OopBendContrib... Generating docs for compound ForceFields::MMFF::MMFFDef... Generating docs for compound ForceFields::MMFF::MMFFProp... Generating docs for compound ForceFields::MMFF::MMFFPBCI... Generating docs for compound ForceFields::MMFF::MMFFChg... Generating docs for compound ForceFields::MMFF::MMFFBond... Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurie... Generating docs for compound ForceFields::MMFF::MMFFCovRadPauEle... Generating docs for compound ForceFields::MMFF::MMFFAngle... Generating docs for compound ForceFields::MMFF::MMFFStbn... Generating docs for compound ForceFields::MMFF::MMFFOop... Generating docs for compound ForceFields::MMFF::MMFFTor... Generating docs for compound ForceFields::MMFF::MMFFVdW... Generating docs for compound ForceFields::MMFF::MMFFVdWRijstarEps... Generating docs for compound ForceFields::MMFF::MMFFAromCollection... Generating docs for compound ForceFields::MMFF::MMFFDefCollection... Generating docs for compound ForceFields::MMFF::MMFFPropCollection... Generating docs for compound ForceFields::MMFF::MMFFPBCICollection... Generating docs for compound ForceFields::MMFF::MMFFChgCollection... Generating docs for compound ForceFields::MMFF::MMFFBondCollection... Generating docs for compound ForceFields::MMFF::MMFFBndkCollection... Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurieCollection... Generating docs for compound ForceFields::MMFF::MMFFCovRadPauEleCollection... Generating docs for compound ForceFields::MMFF::MMFFAngleCollection... Generating docs for compound ForceFields::MMFF::MMFFStbnCollection... Generating docs for compound ForceFields::MMFF::MMFFDfsbCollection... Generating docs for compound ForceFields::MMFF::MMFFOopCollection... Generating docs for compound ForceFields::MMFF::MMFFTorCollection... Generating docs for compound ForceFields::MMFF::MMFFVdWCollection... Generating docs for compound ForceFields::MMFF::StretchBendContrib... Generating docs for compound ForceFields::MMFF::TorsionAngleContrib... Generating docs for namespace ForceFields::MMFF::Utils Generating docs for namespace ForceFields::UFF Generating docs for compound ForceFields::UFF::AngleBendContrib... Generating docs for compound ForceFields::UFF::BondStretchContrib... Generating docs for compound ForceFields::UFF::InversionContrib... Generating docs for compound ForceFields::UFF::InversionContribsParams... Generating docs for compound ForceFields::UFF::InversionContribs... Generating docs for compound ForceFields::UFF::vdWContrib... Generating docs for compound ForceFields::UFF::UFFBond... Generating docs for compound ForceFields::UFF::UFFAngle... Generating docs for compound ForceFields::UFF::UFFTor... Generating docs for compound ForceFields::UFF::UFFInv... Generating docs for compound ForceFields::UFF::UFFVdW... Generating docs for compound ForceFields::UFF::AtomicParams... Generating docs for compound ForceFields::UFF::ParamCollection... Generating docs for compound ForceFields::UFF::TorsionAngleContrib... Generating docs for namespace ForceFields::UFF::Params Generating docs for namespace ForceFields::UFF::Utils Generating docs for namespace Invar Generating docs for compound Invar::Invariant... Generating docs for namespace MolTransforms Generating docs for namespace Queries Generating docs for compound Queries::AndQuery< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for compound Queries::EqualityQuery< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for compound Queries::GreaterEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for compound Queries::GreaterQuery< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for compound Queries::LessEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for compound Queries::LessQuery< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for compound Queries::OrQuery< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for compound Queries::Int2Type< v >... Generating docs for compound Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for compound Queries::RangeQuery< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for compound Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for compound Queries::XOrQuery< MatchFuncArgType, DataFuncArgType, needsConversion >... Generating docs for namespace Rankers Generating docs for namespace RDCatalog Generating docs for compound RDCatalog::Catalog< entryType, paramType >... Generating docs for compound RDCatalog::HierarchCatalog< entryType, paramType, orderType >... Generating docs for nested compound RDCatalog::HierarchCatalog< entryType, paramType, orderType >::vertex_entry_t... Generating docs for compound RDCatalog::CatalogEntry... Generating docs for compound RDCatalog::CatalogParams... Generating docs for namespace RDDataManip Generating docs for compound RDDataManip::MetricMatrixCalc< vectType, entryType >... Generating docs for namespace RDDepict Generating docs for compound RDDepict::gtIIPair... Generating docs for compound RDDepict::EmbeddedAtom... Generating docs for compound RDDepict::EmbeddedFrag... Generating docs for compound RDDepict::DepictException... Generating docs for compound RDDepict::Compute2DCoordParameters... Generating docs for compound RDDepict::ConstrainedDepictionParams... Generating docs for compound RDDepict::CoordinateTemplates... Generating docs for namespace RDFeatures Generating docs for compound RDFeatures::ExplicitFeature< FAMILYMARKER, TYPEMARKER, LOCTYPE >... Generating docs for compound RDFeatures::ImplicitFeature< FAMILYMARKER, TYPEMARKER, LOCTYPE >... Generating docs for namespace RDGeom Generating docs for compound RDGeom::GridException... Generating docs for compound RDGeom::Grid3D< VectorType, ValueType1, ValueType2 >... Generating docs for compound RDGeom::Point... Generating docs for compound RDGeom::Point3D... Generating docs for compound RDGeom::Point2D... Generating docs for compound RDGeom::PointND... Generating docs for compound RDGeom::Transform2D... Generating docs for compound RDGeom::Transform3D... Generating docs for compound RDGeom::UniformGrid3D... Generating docs for compound RDGeom::UniformRealValueGrid3D... Generating docs for namespace RDInfoTheory Generating docs for compound RDInfoTheory::BitCorrMatGenerator... Generating docs for compound RDInfoTheory::InfoBitRanker... Ge/build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstanceGroup.h:283: warning: The following parameter of RDKit::addSubstanceGroup(ROMol &mol, SubstanceGroup sgroup) is not documented: parameter 'mol' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SequenceParsers.h:105: warning: argument 'seq' of command @param is not found in the argument list of RDKit::HELMToMol(const char *helm, bool sanitize=true) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/SequenceParsers.h:105: warning: The following parameter of RDKit::HELMToMol(const char *helm, bool sanitize=true) is not documented: parameter 'helm' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Fingerprints.h:69: warning: The following parameter of RDKit::LayeredFingerprintMol(const ROMol &mol, unsigned int layerFlags=0xFFFFFFFF, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, std::vector< unsigned int > *atomCounts=nullptr, ExplicitBitVect *setOnlyBits=nullptr, bool branchedPaths=true, const std::vector< std::uint32_t > *fromAtoms=nullptr) is not documented: parameter 'fromAtoms' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesWrite.h:226: warning: argument 'doRandom' of command @param is not found in the argument list of RDKit::MolFragmentToSmiles(const ROMol &mol, const std::vector< int > &atomsToUse, const std::vector< int > *bondsToUse=nullptr, const std::vector< std::string > *atomSymbols=nullptr, const std::vector< std::string > *bondSymbols=nullptr, bool doIsomericSmiles=true, bool doKekule=false, int rootedAtAtom=-1, bool canonical=true, bool allBondsExplicit=false, bool allHsExplicit=false) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:35: warning: argument 'MolWriterParams' of command @param is not found in the argument list of RDKit::MolToMolBlock(const ROMol &mol, const MolWriterParams ¶ms, int confId=-1) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:35: warning: The following parameter of RDKit::MolToMolBlock(const ROMol &mol, const MolWriterParams ¶ms, int confId=-1) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:110: warning: argument 'MolWriterParams' of command @param is not found in the argument list of RDKit::MolToMolFile(const ROMol &mol, const std::string &fName, const MolWriterParams ¶ms, int confId=-1) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:110: warning: The following parameter of RDKit::MolToMolFile(const ROMol &mol, const std::string &fName, const MolWriterParams ¶ms, int confId=-1) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse/MarvinParser.h:180: warning: The following parameters of RDKit::MolToMrvBlock(const ROMol &mol, bool includeStereo=true, int confId=-1, bool kekulize=true, bool prettyPrint=false) are not documented: parameter 'mol' parameter 'includeStereo' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MarvinParse/MarvinParser.h:155: warning: The following parameters of RDKit::MolToMrvFile(const ROMol &mol, const std::string &fName, bool includeStereo=true, int confId=-1, bool kekulize=true, bool prettyPrint=false) are not documented: parameter 'mol' parameter 'fName' parameter 'includeStereo' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:226: warning: argument 'fName' of command @param is not found in the argument list of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:226: warning: The following parameter of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) is not documented: parameter 'fname' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:96: warning: argument 'MolWriterParams' of command @param is not found in the argument list of RDKit::MolToV2KMolBlock(const ROMol &mol, const MolWriterParams ¶ms=MolWriterParams(), int confId=-1) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:96: warning: The following parameter of RDKit::MolToV2KMolBlock(const ROMol &mol, const MolWriterParams ¶ms=MolWriterParams(), int confId=-1) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:65: warning: argument 'MolWriterParams' of command @param is not found in the argument list of RDKit::MolToV3KMolBlock(const ROMol &mol, const MolWriterParams ¶ms, int confId=-1) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:65: warning: The following parameter of RDKit::MolToV3KMolBlock(const ROMol &mol, const MolWriterParams ¶ms, int confId=-1) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:141: warning: argument 'MolWriterParams' of command @param is not found in the argument list of RDKit::MolToV3KMolFile(const ROMol &mol, const std::string &fName, const MolWriterParams ¶ms, int confId=-1) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileWriters.h:141: warning: The following parameter of RDKit::MolToV3KMolFile(const ROMol &mol, const std::string &fName, const MolWriterParams ¶ms, int confId=-1) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Fingerprints.h:120: warning: The following parameter of RDKit::PatternFingerprintMol(const ROMol &mol, unsigned int fpSize=2048, std::vector< unsigned int > *atomCounts=nullptr, ExplicitBitVect *setOnlyBits=nullptr, bool tautomericFingerprint=false) is not documented: parameter 'tautomericFingerprint' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Fingerprints.h:27: warning: argument 'useBondOrders' of command @param is not found in the argument list of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< std::uint32_t > *atomInvariants=nullptr, const std::vector< std::uint32_t > *fromAtoms=nullptr, std::vector< std::vector< std::uint32_t > > *atomBits=nullptr, std::map< std::uint32_t, std::vector< std::vector< int > > > *bitInfo=nullptr) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Fingerprints.h:27: warning: The following parameters of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< std::uint32_t > *atomInvariants=nullptr, const std::vector< std::uint32_t > *fromAtoms=nullptr, std::vector< std::vector< std::uint32_t > > *atomBits=nullptr, std::map< std::uint32_t, std::vector< std::vector< int > > > *bitInfo=nullptr) are not documented: parameter 'useBondOrder' parameter 'bitInfo' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionRunner.h:94: warning: The following parameter of RDKit::reduceProductToSideChains(const ROMOL_SPTR &product, bool addDummyAtoms=true) is not documented: parameter 'product' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemTransforms/ChemTransforms.h:114: warning: argument 'useChirality' of command @param is not found in the argument list of RDKit::replaceCore(const ROMol &mol, const ROMol &core, const MatchVectType &matchVect, bool replaceDummies=true, bool labelByIndex=false, bool requireDummyMatch=false) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionRunner.h:66: warning: argument 'reactantTemplateIdx' of command @param is not found in the argument list of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/ReactionRunner.h:66: warning: The following parameters of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) are not documented: parameter 'rxn' parameter 'reactantIdx' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructMatch.h:87: warning: argument 'matchParams' of command @param is not found in the argument list of RDKit::SubstructMatch(const ROMol &mol, const ROMol &query, const SubstructMatchParameters ¶ms=SubstructMatchParameters()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructMatch.h:87: warning: The following parameter of RDKit::SubstructMatch(const ROMol &mol, const ROMol &query, const SubstructMatchParameters ¶ms=SubstructMatchParameters()) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructMatch.h:100: warning: argument 'matchParams' of command @param is not found in the argument list of RDKit::SubstructMatch(ResonanceMolSupplier &resMolSuppl, const ROMol &query, const SubstructMatchParameters ¶ms=SubstructMatchParameters()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructMatch.h:100: warning: The following parameter of RDKit::SubstructMatch(ResonanceMolSupplier &resMolSuppl, const ROMol &query, const SubstructMatchParameters ¶ms=SubstructMatchParameters()) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Substruct/SubstructMatch.h:155: warning: The following parameter of RDKit::SubstructMatch(T1 &mol, const T2 &query, std::vector< MatchVectType > &matchVect, bool uniquify=true, bool recursionPossible=true, bool useChirality=false, bool useQueryQueryMatches=false, unsigned int maxMatches=1000, int numThreads=1) is not documented: parameter 'numThreads' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Reaction.h:219: warning: argument 'maxProducts' of command @param is not found in the argument list of RDKit::ChemicalReaction::runReactants(const MOL_SPTR_VECT reactants, unsigned int numProducts=1000) const /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Reaction.h:219: warning: The following parameter of RDKit::ChemicalReaction::runReactants(const MOL_SPTR_VECT reactants, unsigned int numProducts=1000) const is not documented: parameter 'numProducts' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:98: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:98: warning: The following parameter of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 is not documented: parameter 'matchVect' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatchers.h:336: warning: argument 'matches' of command @param is not found in the argument list of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 98 in file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:98: warning: The following parameter of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const is not documented: parameter 'matchVect' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatchers.h:430: warning: argument 'matches' of command @param is not found in the argument list of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 98 in file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:98: warning: The following parameter of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const is not documented: parameter 'matchVect' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintGenerator.h:123: warning: The following parameters of RDKit::AtomEnvironment::getBitId(FingerprintArguments *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, AdditionalOutput *AdditionalOutput, const bool hashResults=false, const std::uint64_t fpSize=0) const=0 are not documented: parameter 'AdditionalOutput' parameter 'fpSize' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.h:71: warning: argument highlight_atoms from the argument list of RDKit::MolDraw2D::drawMolecule has multiple @param documentation sections /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.h:71: warning: The following parameter of RDKit::MolDraw2D::drawMolecule(const ROMol &mol, const std::string &legend, const std::vector< int > *highlight_atoms, const std::vector< int > *highlight_bonds, const std::map< int, DrawColour > *highlight_atom_map=nullptr, const std::map< int, DrawColour > *highlight_bond_map=nullptr, const std::map< int, double > *highlight_radii=nullptr, int confId=-1) is not documented: parameter 'highlight_bonds' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.h:149: warning: argument 'highlight_atom_map' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=nullptr, const std::vector< std::vector< int > > *highlight_atoms=nullptr, const std::vector< std::vector< int > > *highlight_bonds=nullptr, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=nullptr, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=nullptr, const std::vector< std::map< int, double > > *highlight_radii=nullptr, const std::vector< int > *confIds=nullptr) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.h:149: warning: argument 'highlight_bond_map' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=nullptr, const std::vector< std::vector< int > > *highlight_atoms=nullptr, const std::vector< std::vector< int > > *highlight_bonds=nullptr, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=nullptr, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=nullptr, const std::vector< std::map< int, double > > *highlight_radii=nullptr, const std::vector< int > *confIds=nullptr) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.h:149: warning: argument 'confId' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=nullptr, const std::vector< std::vector< int > > *highlight_atoms=nullptr, const std::vector< std::vector< int > > *highlight_bonds=nullptr, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=nullptr, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=nullptr, const std::vector< std::map< int, double > > *highlight_radii=nullptr, const std::vector< int > *confIds=nullptr) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.h:149: warning: argument highlight_atoms from the argument list of RDKit::MolDraw2D::drawMolecules has multiple @param documentation sections /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/MolDraw2D.h:149: warning: The following parameters of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=nullptr, const std::vector< std::vector< int > > *highlight_atoms=nullptr, const std::vector< std::vector< int > > *highlight_bonds=nullptr, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=nullptr, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=nullptr, const std::vector< std::map< int, double > > *highlight_radii=nullptr, const std::vector< int > *confIds=nullptr) are not documented: parameter 'highlight_bonds' parameter 'highlight_atom_maps' parameter 'highlight_bond_maps' parameter 'confIds' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Resonance.h:114: warning: argument 'numThreads' of command @param is not found in the argument list of RDKit::ResonanceMolSupplier::ResonanceMolSupplier(ROMol &mol, unsigned int flags=0, unsigned int maxStructs=1000) nerating docs for namespace RDKit Generating docs for compound RDKit::Atom... Generating docs for compound RDKit::atomicData... Generating docs for compound RDKit::AtomIterator_< Atom_, Mol_ >... Generating docs for compound RDKit::HeteroatomIterator_< Atom_, Mol_ >... Generating docs for compound RDKit::AromaticAtomIterator_< Atom_, Mol_ >... Generating docs for compound RDKit::QueryAtomIterator_< Atom_, Mol_ >... Generating docs for compound RDKit::MatchingAtomIterator_< Atom_, Mol_ >... Generating docs for compound RDKit::Bond... Generating docs for compound RDKit::BondIterator_... Generating docs for compound RDKit::ConstBondIterator_... Generating docs for compound RDKit::CartesianProductStrategy... Generating docs for compound RDKit::EnumerationParams... Generating docs for compound RDKit::EnumerateLibrary... Generating docs for compound RDKit::EnumerateLibraryBase... Generating docs for compound RDKit::EnumerationStrategyException... Generating docs for compound RDKit::EnumerationStrategyBase... Generating docs for compound RDKit::EvenSamplePairsStrategy... Generating docs for compound RDKit::RandomSampleStrategy... Generating docs for compound RDKit::RandomSampleAllBBsStrategy... Generating docs for compound RDKit::ChemicalReactionException... Generating docs for compound RDKit::ChemicalReaction... Generating docs for compound RDKit::ReactionFingerprintParams... Generating docs for compound RDKit::ChemicalReactionParserException... Generating docs for compound RDKit::ReactionPicklerException... Generating docs for compound RDKit::ReactionPickler... Generating docs for compound RDKit::RxnSanitizeException... Generating docs for compound RDKit::MolzipParams... Generating docs for compound RDKit::ConformerException... Generating docs for compound RDKit::Conformer... Generating docs for compound RDKit::MaxFindBondOrdersItersExceeded... Generating docs for compound RDKit::MolWriterParams... Generating docs for compound RDKit::StereoBondThresholds... Generating docs for compound RDKit::MolWriter... Generating docs for compound RDKit::SmilesWriter... Generating docs for compound RDKit::SDWriter... Generating docs for compound RDKit::TDTWriter... Generating docs for compound RDKit::PDBWriter... Generating docs for compound RDKit::PNGMetadataParams... Generating docs for compound RDKit::FilterCatalogParams... Generating docs for compound RDKit::FilterCatalog... Generating docs for compound RDKit::FilterCatalogEntry... Generating docs for compound RDKit::FilterMatch... Generating docs for compound RDKit::FilterMatcherBase... Generating docs for compound RDKit::SmartsMatcher... Generating docs for compound RDKit::ExclusionList... Generating docs for compound RDKit::FilterHierarchyMatcher... Generating docs for compound RDKit::FilterData_t... Generating docs for compound RDKit::FilterProperty_t... Generating docs for compound RDKit::AdditionalOutput... Generating docs for compound RDKit::FingerprintArguments... Generating docs for compound RDKit::AtomEnvironment< OutputType >... Generating docs for compound RDKit::AtomEnvironmentGenerator< OutputType >... Generating docs for compound RDKit::AtomInvariantsGenerator... Generating docs for compound RDKit::BondInvariantsGenerator... Generating docs for compound RDKit::FingerprintFuncArguments... Generating docs for compound RDKit::FingerprintGenerator< OutputType >... Generating docs for compound RDKit::UnimplementedFPException... Generating docs for compound RDKit::MCSAtomCompareParameters... Generating docs for compound RDKit::MCSBondCompareParameters... Generating docs for compound RDKit::MCSProgressData... Generating docs for compound RDKit::MCSParameters... Generating docs for compound RDKit::MCSResult... Generating docs for compound RDKit::FragCatalogEntry... Generating docs for compound RDKit::FragCatGenerator... Generating docs for compound RDKit::FragCatParams... Generating docs for compound RDKit::FragFPGenerator... Generating docs for compound RDKit::MarvinWriterException... Generating docs for compound RDKit::MarvinArrow... Generating docs for compound RDKit::MarvinPlus... Generating docs for compound RDKit::MarvinCondition... Generating docs for compound RDKit::MarvinAttachmentPoint... Generating docs for compound RDKit::MarvinAtom... Generating docs for compound RDKit::MarvinBondStereo... Generating docs for compound RDKit::MarvinBond... Generating docs for compound RDKit::MarvinRectangle... Generating docs for compound RDKit::MarvinMolBase... Generating docs for compound RDKit::MarvinSruCoModSgroup... Generating docs for compound RDKit::MarvinDataSgroup... Generating docs for compound RDKit::MarvinSuperatomSgroupExpanded... Generating docs for compound RDKit::MarvinMultipleSgroup... Generating docs for compound RDKit::MarvinMulticenterSgroup... Generating docs for compound RDKit::MarvinGenericSgroup... Generating docs for compound RDKit::MarvinMonomerSgroup... Generating docs for compound RDKit::MarvinSuperatomSgroup... Generating docs for compound RDKit::MarvinMol... Generating docs for compound RDKit::MarvinReaction... Generating docs for compound RDKit::MarvinStereoGroup... Generating docs for compound RDKit::MrvWriterParams... Generating docs for compound RDKit::MolBundle... Generating docs for compound RDKit::FixedMolSizeMolBundle... Generating docs for compound RDKit::MolCatalogEntry... Generating docs for compound RDKit::MolCatalogParams... Generating docs for compound RDKit::FeatureFileParseException... Generating docs for compound RDKit::MolChemicalFeature... Generating docs for compound RDKit::MolChemicalFeatureDef... Generating docs for compound RDKit::MolChemicalFeatureFactory... Generating docs for compound RDKit::MolDraw2D... Generating docs for compound RDKit::MolDraw2DCairo... Generating docs for compound RDKit::DrawColour... Generating docs for compound RDKit::MolDrawOptions... Generating docs for compound RDKit::MolDraw2DJS... Generating docs for compound RDKit::MolDraw2DSVG... Generating docs for compound RDKit::MolDraw2Dwx... Generating docs for compound RDKit::MolDraw2DQt... Generating docs for compound RDKit::MolPicklerException... Generating docs for compound RDKit::MolPickler... Generating docs for compound RDKit::AtomMonomerInfo... Generating docs for compound RDKit::AtomPDBResidueInfo... Generating docs for compound RDKit::GasteigerParams... Generating docs for compound RDKit::PeriodicTable... Generating docs for compound RDKit::QueryAtom... Generating docs for compound RDKit::QueryBond... Generating docs for compound RDKit::AtomRingQuery... Generating docs for compound RDKit::RecursiveStructureQuery... Generating docs for compound RDKit::HasPropQuery< TargetPtr >... Generating docs for compound RDKit::HasPropWithValueQueryBase... Generating docs for compound RDKit::HasPropWithValueQuery< TargetPtr, T >... Generating docs for compound RDKit::HasPropWithValueQuery< TargetPtr, std::string >... Generating docs for compound RDKit::HasPropWithValueQuery< TargetPtr, ExplicitBitVect >... Generating docs for compound RDKit::ResonanceMolSupplierCallback... Generating docs for compound RDKit::ResonanceMolSupplier... Generating docs for compound RDKit::RCore... Generating docs for compound RDKit::RGroupData... Generating docs for compound RDKit::RGroupDecompositionProcessResult... Generating docs for compound RDKit::UsedLabelMap... Generating docs for compound RDKit::RGroupDecomposition... Generating docs for compound RDKit::RGroupDecompData... Generating docs for nested compound RDKit::RGroupDecompData::UsedLabels... Generating docs for compound RDKit::RGroupDecompositionParameters... Generating docs for compound RDKit::VarianceDataForLabel... Generating docs for compound RDKit::FingerprintVarianceScoreData... Generating docs for compound RDKit::RGroupDecompositionChromosome... Generating docs for compound RDKit::GaResult... Generating docs for compound RDKit::RGroupGa... Generating docs for compound RDKit::RGroupMatch... Generating docs for compound RDKit::CartesianProduct... Generating docs for compound RDKit::RGroupScorer... Generating docs for compound RDKit::RingInfo... Generating docs for compound RDKit::CXXAtomIterator< Graph, Vertex, Iterator >... Generati/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations/Abbreviations.h:104: warning: The following parameter of RDKit::Abbreviations::findApplicableAbbreviationMatches(const ROMol &mol, const std::vector< AbbreviationDefinition > &abbrevs, double maxCoverage=0.4) is not documented: parameter 'mol' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintGenerator.h:123: warning: The following parameters of RDKit::AtomPair::AtomPairAtomEnv::getBitId(FingerprintArguments *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, AdditionalOutput *AdditionalOutput, const bool hashResults=false, const std::uint64_t fpSize=0) const are not documented: parameter 'AdditionalOutput' parameter 'fpSize' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/AtomPairs.h:97: warning: The following parameter of RDKit::AtomPairs::getHashedAtomPairFingerprint(const ROMol &mol, unsigned int nBits=2048, unsigned int minLength=1, unsigned int maxLength=maxPathLen - 1, const std::vector< std::uint32_t > *fromAtoms=nullptr, const std::vector< std::uint32_t > *ignoreAtoms=nullptr, const std::vector< std::uint32_t > *atomInvariants=nullptr, bool includeChirality=false, bool use2D=true, int confId=-1) is not documented: parameter 'confId' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintUtil.h:75: warning: The following parameter of RDKit::AtomPairs::getTopologicalTorsionCode(const std::vector< std::uint32_t > &atomCodes, bool includeChirality=false) is not documented: parameter 'includeChirality' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Canon.h:98: warning: The following parameters of RDKit::Canon::canonicalizeFragment(ROMol &mol, int atomIdx, std::vector< AtomColors > &colors, const std::vector< unsigned int > &ranks, MolStack &molStack, const boost::dynamic_bitset<> *bondsInPlay=nullptr, const std::vector< std::string > *bondSymbols=nullptr, bool doIsomericSmiles=false, bool doRandom=false, bool doChiralInversions=true) are not documented: parameter 'bondsInPlay' parameter 'bondSymbols' parameter 'doIsomericSmiles' parameter 'doRandom' parameter 'doChiralInversions' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Chirality.h:420: warning: The following parameters of RDKit::Chirality::findMesoCenters(const ROMol &mol, bool includeIsotopes=true, bool includeAtomMaps=false) are not documented: parameter 'includeIsotopes' parameter 'includeAtomMaps' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Chirality.h:143: warning: The following parameter of RDKit::Chirality::findPotentialStereo(ROMol &mol, bool cleanIt, bool flagPossible=true) is not documented: parameter 'flagPossible' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Chirality.h:195: warning: The following parameter of RDKit::Chirality::getTrigonalBipyramidalAxialBond(const Atom *center, int which=0) is not documented: parameter 'center' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/CIPLabeler.h:46: warning: The following parameter of RDKit::CIPLabeler::assignCIPLabels(ROMol &mol, unsigned int maxRecursiveIterations=0) is not documented: parameter 'maxRecursiveIterations' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Lipinski.h:45: warning: argument 'strict' of command @param is not found in the argument list of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Lipinski.h:45: warning: The following parameter of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) is not documented: parameter 'useStrictDefinition' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/USRDescriptor.h:68: warning: The following parameter of RDKit::Descriptors::USRCAT(const ROMol &mol, std::vector< double > &descriptor, std::vector< std::vector< unsigned int > > &atomIds, int confId=-1) is not documented: parameter 'atomIds' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/Embedder.h:328: warning: The following parameter of RDKit::DGeomHelpers::EmbedMultipleConfs(ROMol &mol, INT_VECT &res, unsigned int numConfs=10, int numThreads=1, unsigned int maxIterations=30, int seed=-1, bool clearConfs=true, bool useRandomCoords=false, double boxSizeMult=2.0, bool randNegEig=true, unsigned int numZeroFail=1, double pruneRmsThresh=-1.0, const std::map< int, RDGeom::Point3D > *coordMap=nullptr, double optimizerForceTol=1e-3, bool ignoreSmoothingFailures=false, bool enforceChirality=true, bool useExpTorsionAnglePrefs=false, bool useBasicKnowledge=false, bool verbose=false, double basinThresh=5.0, bool onlyHeavyAtomsForRMS=false, unsigned int ETversion=2, bool useSmallRingTorsions=false, bool useMacrocycleTorsions=true, bool useMacrocycle14config=true, unsigned int timeout=0) is not documented: parameter 'timeout' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h:37: warning: The following parameter of RDKit::DGeomHelpers::setTopolBounds(const ROMol &mol, DistGeom::BoundsMatPtr mmat, bool set15bounds=true, bool scaleVDW=false, bool useMacrocycle14config=false, bool forceTransAmides=true) is not documented: parameter 'forceTransAmides' ng docs for nested compound RDKit::CXXAtomIterator< Graph, Vertex, Iterator >::CXXAtomIter... Generating docs for compound RDKit::CXXBondIterator< Graph, Edge, Iterator >... Generating docs for nested compound RDKit::CXXBondIterator< Graph, Edge, Iterator >::CXXBondIter... Generating docs for compound RDKit::ROMol... Generating docs for compound RDKit::RWMol... Generating docs for compound RDKit::MolSanitizeException... Generating docs for compound RDKit::AtomSanitizeException... Generating docs for compound RDKit::AtomValenceException... Generating docs for compound RDKit::AtomKekulizeException... Generating docs for compound RDKit::KekulizeException... Generating docs for compound RDKit::SLNParseException... Generating docs for compound RDKit::RigorousEnhancedStereoException... Generating docs for compound RDKit::SmilesWriteParams... Generating docs for compound RDKit::StereoGroup... Generating docs for compound RDKit::SubstanceGroupException... Generating docs for compound RDKit::SubstanceGroup... Generating docs for nested compound RDKit::SubstanceGroup::AttachPoint... Generating docs for nested compound RDKit::SubstanceGroup::CState... Generating docs for compound RDKit::SubstructMatchParameters... Generating docs for compound RDKit::MolMatchFinalCheckFunctor... Generating docs for compound RDKit::MolHolderBase... Generating docs for compound RDKit::MolHolder... Generating docs for compound RDKit::CachedMolHolder... Generating docs for compound RDKit::CachedSmilesMolHolder... Generating docs for compound RDKit::CachedTrustedSmilesMolHolder... Generating docs for compound RDKit::FPHolderBase... Generating docs for compound RDKit::PatternHolder... Generating docs for compound RDKit::TautomerPatternHolder... Generating docs for compound RDKit::KeyHolderBase... Generating docs for compound RDKit::KeyFromPropHolder... Generating docs for compound RDKit::SubstructLibrary... Generating docs for compound RDKit::TautomerQuery... Generating docs for compound RDKit::Snapshot... Generating docs for compound RDKit::Trajectory... Generating docs for compound RDKit::DataStructsExplicitBitVecPropHandler... Generating docs for compound RDKit::DiscreteDistMat... Generating docs for compound RDKit::DiscreteValueVect... Generating docs for compound RDKit::FPBReader... Generating docs for compound RDKit::MultiFPBReader... Generating docs for compound RDKit::RealValueVect... Generating docs for compound RDKit::SparseIntVect< IndexType >... Generating docs for compound RDKit::BadFileException... Generating docs for compound RDKit::ControlCCaught... Generating docs for compound RDKit::ControlCHandler... Generating docs for compound RDKit::Dict... Generating docs for nested compound RDKit::Dict::Pair... Generating docs for compound RDKit::PairHolder... Generating docs for compound RDKit::FileParseException... Generating docs for compound RDKit::RDAny... Generating docs for compound RDKit::RDProps... Generating docs for compound RDKit::RDValue... Generating docs for compound RDKit::CustomPropHandler... Generating docs for compound RDKit::ltDouble... Generating docs for compound RDKit::larger_of< T >... Generating docs for compound RDKit::charptr_functor... Generating docs for compound RDKit::ExtendedQueryMol... Generating docs for namespace RDKit::Abbreviations Generating docs for compound RDKit::Abbreviations::AbbreviationDefinition... Generating docs for compound RDKit::Abbreviations::AbbreviationMatch... Generating docs for namespace RDKit::Abbreviations::common_properties Generating docs for namespace RDKit::Abbreviations::Utils Generating docs for namespace RDKit::AtomPair Generating docs for compound RDKit::AtomPair::AtomPairAtomInvGenerator... Generating docs for compound RDKit::AtomPair::AtomPairArguments... Generating docs for compound RDKit::AtomPair::AtomPairAtomEnv< OutputType >... Generating docs for compound RDKit::AtomPair::AtomPairEnvGenerator< OutputType >... Generating docs for namespace RDKit::AtomPairs Generating docs for namespace RDKit::Atropisomers Generating docs for namespace RDKit::Canon Generating docs for compound RDKit::Canon::MolStackUnion... Generating docs for compound RDKit::Canon::MolStackElem... Generating docs for compound RDKit::Canon::bondholder... Generating docs for compound RDKit::Canon::canon_atom... Generating docs for compound RDKit::Canon::SpecialChiralityAtomCompareFunctor... Generating docs for compound RDKit::Canon::SpecialSymmetryAtomCompareFunctor... Generating docs for compound RDKit::Canon::AtomCompareFunctor... Generating docs for compound RDKit::Canon::ChiralAtomCompareFunctor... Generating docs for namespace RDKit::Canon::detail Generating docs for namespace RDKit::Chirality Generating docs for compound RDKit::Chirality::StereoInfo... Generating docs for compound RDKit::Chirality::BondWedgingParameters... Generating docs for compound RDKit::Chirality::WedgeInfoBase... Generating docs for compound RDKit::Chirality::WedgeInfoChiral... Generating docs for compound RDKit::Chirality::WedgeInfoAtropisomer... Generating docs for namespace RDKit::Chirality::detail Generating docs for namespace RDKit::CIPLabeler Generating docs for compound RDKit::CIPLabeler::MaxIterationsExceeded... Generating docs for compound RDKit::CIPLabeler::CIPMolSpan< T, U >... Generating docs for nested compound RDKit::CIPLabeler::CIPMolSpan< T, U >::CIPMolIter... Generating docs for compound RDKit::CIPLabeler::CIPMol... Generating docs for compound RDKit::CIPLabeler::AtropisomerBond... Generating docs for compound RDKit::CIPLabeler::Configuration... Generating docs for compound RDKit::CIPLabeler::Sp2Bond... Generating docs for compound RDKit::CIPLabeler::Tetrahedral... Generating docs for compound RDKit::CIPLabeler::Digraph... Generating docs for compound RDKit::CIPLabeler::Edge... Generating docs for compound RDKit::CIPLabeler::Node... Generating docs for compound RDKit::CIPLabeler::Priority... Generating docs for compound RDKit::CIPLabeler::PairList... Generating docs for compound RDKit::CIPLabeler::Rule1a... Generating docs for compound RDKit::CIPLabeler::Rule1b... Generating docs for compound RDKit::CIPLabeler::Rule2... Generating docs for compound RDKit::CIPLabeler::Rule3... Generating docs for compound RDKit::CIPLabeler::Rule4a... Generating docs for compound RDKit::CIPLabeler::Rule4b... Generating docs for compound RDKit::CIPLabeler::Rule4c... Generating docs for compound RDKit::CIPLabeler::Rule5... Generating docs for compound RDKit::CIPLabeler::Rule5New... Generating docs for compound RDKit::CIPLabeler::Rule6... Generating docs for compound RDKit::CIPLabeler::Rules... Generating docs for compound RDKit::CIPLabeler::SequenceRule... Generating docs for compound RDKit::CIPLabeler::Sort... Generating docs for compound RDKit::CIPLabeler::TooManyNodesException... Generating docs for namespace RDKit::CIPLabeler_detail Generating docs for namespace RDKit::common_properties Generating docs for namespace RDKit::constants Generating docs for namespace RDKit::Deprotect Generating docs for compound RDKit::Deprotect::DeprotectData... Generating docs for namespace RDKit::Descriptors Generating docs for compound RDKit::Descriptors::CrippenParams... Generating docs for compound RDKit::Descriptors::CrippenParamCollection... Generating docs for compound RDKit::Descriptors::DoubleCubicLatticeVolume... Generating docs for compound RDKit::Descriptors::PropertyFunctor... Generating docs for compound RDKit::Descriptors::Properties... Generating docs for namespace RDKit::Descriptors::detail Generating docs for namespace RDKit::detail Generating docs for compound RDKit::detail::MCSParametersInternal... Generating docs for namespace RDKit::details Generating docs for namespace RDKit::DGeomHelpers Generating docs for compound RDKit::DGeomHelpers::EmbedParameters... Generating docs for namespace RDKit::DTags Generating docs for namespace RDKit::EnumerateStereoisomers Generating docs for compound RDKit::EnumerateStereoisomers::StereoEnumerationOptions... Generating docs for compound RDKit::EnumerateStereoisomers::StereoisomerEnumerator... Generating docs for namespace RDKit::EnumerateStereoisomers::details Generating docs for compound RDKit::EnumerateStere/build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatchers.h:98: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 98 in file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:98: warning: The following parameter of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const is not documented: parameter 'matchVect' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatchers.h:161: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 98 in file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:98: warning: The following parameter of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const is not documented: parameter 'matchVect' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatchers.h:218: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 98 in file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:98: warning: The following parameter of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const is not documented: parameter 'matchVect' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MHFP.h:93: warning: The following parameter of RDKit::MHFPFingerprints::MHFPEncoder::CreateShingling(const ROMol &mol, unsigned char radius=3, bool rings=true, bool isomeric=false, bool kekulize=false, unsigned char min_radius=1) is not documented: parameter 'mol' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MHFP.h:132: warning: The following parameter of RDKit::MHFPFingerprints::MHFPEncoder::Encode(ROMol &mol, unsigned char radius=3, bool rings=true, bool isomeric=false, bool kekulize=false, unsigned char min_radius=1) is not documented: parameter 'mol' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MHFP.h:183: warning: The following parameter of RDKit::MHFPFingerprints::MHFPEncoder::EncodeSECFP(ROMol &mol, unsigned char radius=3, bool rings=true, bool isomeric=false, bool kekulize=false, unsigned char min_radius=1, size_t length=2048) is not documented: parameter 'mol' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA/MMPA.h:28: warning: The following parameter of RDKit::MMPA::fragmentMol(const ROMol &mol, std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > &result, unsigned int maxCuts=3, unsigned int maxCutBonds=20, const std::string &pattern="[#6+0;!$(*=,#[!#6])]!@!=!#[*]") is not documented: parameter 'pattern' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA/MMPA.h:49: warning: The following parameter of RDKit::MMPA::fragmentMol(const ROMol &mol, std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > &result, unsigned int minCuts, unsigned int maxCuts, unsigned int maxCutBonds, const std::string &pattern="[#6+0;!$(*=,#[!#6])]!@!=!#[*]") is not documented: parameter 'pattern' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/AlignMolecules.h:149: warning: argument 'trans' of command @param is not found in the argument list of RDKit::MolAlign::getBestRMS(ROMol &prbMol, const ROMol &refMol, int prbCid=-1, int refCid=-1, const std::vector< MatchVectType > &map=std::vector< MatchVectType >(), int maxMatches=1e6, bool symmetrizeConjugatedTerminalGroups=true, const RDNumeric::DoubleVector *weights=nullptr, int numThreads=1) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMol.h:45: warning: argument 'highlightRadii' of command @param is not found in the argument list of RDKit::MolDraw2D_detail::DrawMol::DrawMol(const ROMol &mol, const std::string &legend, int width, int height, const MolDrawOptions &drawOptions, DrawText &textDrawer, const std::vector< int > *highlightAtoms=nullptr, const std::vector< int > *highlightBonds=nullptr, const std::map< int, DrawColour > *highlightAtomMap=nullptr, const std::map< int, DrawColour > *highlightBondMap=nullptr, const std::vector< std::pair< DrawColour, DrawColour > > *bondColours=nullptr, const std::map< int, double > *highlight_radii=nullptr, bool includeAnnotations=true, int confId=-1, bool isReactionMol=false) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMol.h:45: warning: The following parameters of RDKit::MolDraw2D_detail::DrawMol::DrawMol(const ROMol &mol, const std::string &legend, int width, int height, const MolDrawOptions &drawOptions, DrawText &textDrawer, const std::vector< int > *highlightAtoms=nullptr, const std::vector< int > *highlightBonds=nullptr, const std::map< int, DrawColour > *highlightAtomMap=nullptr, const std::map< int, DrawColour > *highlightBondMap=nullptr, const std::vector< std::pair< DrawColour, DrawColour > > *bondColours=nullptr, const std::map< int, double > *highlight_radii=nullptr, bool includeAnnotations=true, int confId=-1, bool isReactionMol=false) are not documented: parameter 'bondColours' parameter 'highlight_radii' parameter 'includeAnnotations' parameter 'isReactionMol' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCH.h:28: warning: argument 'highlightRadii' of command @param is not found in the argument list of RDKit::MolDraw2D_detail::DrawMolMCH::DrawMolMCH(const ROMol &mol, const std::string &legend, int width, int height, MolDrawOptions &drawOptions, DrawText &textDrawer, const std::map< int, std::vector< DrawColour > > &highlight_atom_map, const std::map< int, std::vector< DrawColour > > &highlight_bond_map, const std::map< int, double > &highlight_radii, const std::map< int, int > &highlight_linewidth_multipliers, int confId=-1) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCH.h:28: warning: The following parameter of RDKit::MolDraw2D_detail::DrawMolMCH::DrawMolMCH(const ROMol &mol, const std::string &legend, int width, int height, MolDrawOptions &drawOptions, DrawText &textDrawer, const std::map< int, std::vector< DrawColour > > &highlight_atom_map, const std::map< int, std::vector< DrawColour > > &highlight_bond_map, const std::map< int, double > &highlight_radii, const std::map< int, int > &highlight_linewidth_multipliers, int confId=-1) is not documented: parameter 'highlight_radii' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.h:24: warning: argument 'highlightRadii' of command @param is not found in the argument list of RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::DrawMolMCHCircleAndLine(const ROMol &mol, const std::string &legend, int width, int height, MolDrawOptions &drawOptions, DrawText &textDrawer, const std::map< int, std::vector< DrawColour > > &highlight_atom_map, const std::map< int, std::vector< DrawColour > > &highlight_bond_map, const std::map< int, double > &highlight_radii, const std::map< int, int > &highlight_linewidth_multipliers, int confId=-1) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.h:24: warning: The following parameter of RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::DrawMolMCHCircleAndLine(const ROMol &mol, const std::string &legend, int width, int height, MolDrawOptions &drawOptions, DrawText &textDrawer, const std::map< int, std::vector< DrawColour > > &highlight_atom_map, const std::map< int, std::vector< DrawColour > > &highlight_bond_map, const std::map< int, double > &highlight_radii, const std::map< int, int > &highlight_linewidth_multipliers, int confId=-1) is not documented: parameter 'highlight_radii' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCHLasso.h:36: warning: argument 'highlightRadii' of command @param is not found in the argument list of RDKit::MolDraw2D_detail::DrawMolMCHLasso::DrawMolMCHLasso(const ROMol &mol, const std::string &legend, int width, int height, MolDrawOptions &drawOptions, DrawText &textDrawer, const std::map< int, std::vector< DrawColour > > &highlight_atom_map, const std::map< int, std::vector< DrawColour > > &highlight_bond_map, const std::map< int, double > &highlight_radii, const std::map< int, int > &highlight_linewidth_multipliers, int confId=-1) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/DrawMolMCHLasso.h:36: warning: The following parameter of RDKit::MolDraw2D_detail::DrawMolMCHLasso::DrawMolMCHLasso(const ROMol &mol, const std::string &legend, int width, int height, MolDrawOptions &drawOptions, DrawText &textDrawer, const std::map< int, std::vector< DrawColour > > &highlight_atom_map, const std::map< int, std::vector< DrawColour > > &highlight_bond_map, const std::map< int, double > &highlight_radii, const std::map< int, int > &highlight_linewidth_multipliers, int confId=-1) is not documented: parameter 'highlight_radii' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/MolEnumerator.h:263: warning: The following parameter of RDKit::MolEnumerator::enumerate(const ROMol &mol, size_t maxPerOperation=0) is not documented: parameter 'mol' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/MolInterchange.h:81: warning: The following parameter of RDKit::MolInterchange::MolsToJSONData(const std::vector< T > &mols, const JSONWriteParameters ¶ms=defaultJSONWriteParameters) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/MolInterchange.h:90: warning: The following parameter of RDKit::MolInterchange::MolToJSONData(const T &mol, const JSONWriteParameters ¶ms=defaultJSONWriteParameters) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:789: warning: The following parameter of RDKit::MolOps::findSSSR(const ROMol &mol, std::vector< std::vector< int > > &res, bool includeDativeBonds=false, bool includeHydrogenBonds=false) is not documented: parameter 'includeHydrogenBonds' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:362: warning: The following parameters of RDKit::MolOps::mergeQueryHs(const ROMol &mol, bool mergeUnmappedOnly=false, bool mergeIsotopes=false) are not documented: parameter 'mergeUnmappedOnly' parameter 'mergeIsotopes' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:855: warning: The following parameter of RDKit::MolOps::symmetrizeSSSR(ROMol &mol, std::vector< std::vector< int > > &res, bool includeDativeBonds=false, bool includeHydrogenBonds=false) is not documented: parameter 'includeHydrogenBonds' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:1332: warning: argument 'addAsQueries' of command @param is not found in the argument list of RDKit::MolOps::details::addExplicitAttachmentPoint(RWMol &mol, unsigned int atomIdx, unsigned int val, bool addAsQuery=true, bool addCoords=true) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:1332: warning: The following parameter of RDKit::MolOps::details::addExplicitAttachmentPoint(RWMol &mol, unsigned int atomIdx, unsigned int val, bool addAsQuery=true, bool addCoords=true) is not documented: parameter 'addAsQuery' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:1349: warning: argument 'mol' of command @param is not found in the argument list of RDKit::MolOps::details::isAttachmentPoint(const Atom *atom, bool markedOnly=true) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolOps.h:1349: warning: The following parameter of RDKit::MolOps::details::isAttachmentPoint(const Atom *atom, bool markedOnly=true) is not documented: parameter 'atom' oisomers::details::Flipper... Generating docs for compound RDKit::EnumerateStereoisomers::details::AtomFlipper... Generating docs for compound RDKit::EnumerateStereoisomers::details::BondFlipper... Generating docs for compound RDKit::EnumerateStereoisomers::details::StereoGroupFlipper... Generating docs for compound RDKit::EnumerateStereoisomers::details::AtropisomerFlipper... Generating docs for namespace RDKit::EnumerationStrategyPickler Generating docs for namespace RDKit::EnumerationTypes Generating docs for namespace RDKit::FileParsers Generating docs for namespace RDKit::FileParsers::schrodinger Generating docs for namespace RDKit::FileParserUtils Generating docs for namespace RDKit::FilterMatchOps Generating docs for compound RDKit::FilterMatchOps::And... Generating docs for compound RDKit::FilterMatchOps::Or... Generating docs for compound RDKit::FilterMatchOps::Not... Generating docs for namespace RDKit::FMCS Generating docs for compound RDKit::FMCS::Composition2N... Generating docs for compound RDKit::FMCS::ExecStatistics... Generating docs for compound RDKit::FMCS::DuplicatedSeedCache... Generating docs for nested compound RDKit::FMCS::DuplicatedSeedCache::TKey... Generating docs for compound RDKit::FMCS::Graph... Generating docs for compound RDKit::FMCS::TArray2D< T >... Generating docs for compound RDKit::FMCS::MaximumCommonSubgraph... Generating docs for compound RDKit::FMCS::MolFragment... Generating docs for compound RDKit::FMCS::NewBond... Generating docs for compound RDKit::FMCS::Seed... Generating docs for compound RDKit::FMCS::SeedSet... Generating docs for compound RDKit::FMCS::SubstructureCache... Generating docs for nested compound RDKit::FMCS::SubstructureCache::KeyNumericMetrics... Generating docs for nested compound RDKit::FMCS::SubstructureCache::HashKey... Generating docs for compound RDKit::FMCS::Target... Generating docs for compound RDKit::FMCS::TargetMatch... Generating docs for namespace RDKit::ForceFieldsHelper Generating docs for namespace RDKit::ForceFieldsHelper::detail Generating docs for namespace RDKit::GeneralizedSubstruct Generating docs for compound RDKit::GeneralizedSubstruct::ExtendedQueryMol... Generating docs for namespace RDKit::GeneralMolSupplier Generating docs for compound RDKit::GeneralMolSupplier::SupplierOptions... Generating docs for namespace RDKit::GenericGroups Generating docs for namespace RDKit::GenericGroups::Matchers Generating docs for namespace RDKit::Local Generating docs for namespace RDKit::MACCSFingerprints Generating docs for namespace RDKit::MHFPFingerprints Generating docs for compound RDKit::MHFPFingerprints::MHFPEncoder... Generating docs for namespace RDKit::MHFPFingerprints::FNV Generating docs for namespace RDKit::MMFF Generating docs for compound RDKit::MMFF::MMFFAtomProperties... Generating docs for compound RDKit::MMFF::MMFFMolProperties... Generating docs for namespace RDKit::MMFF::DefaultParameters Generating docs for namespace RDKit::MMFF::Tools Generating docs for compound RDKit::MMFF::Tools::DefaultTorsionBondSmarts... Generating docs for namespace RDKit::MMPA Generating docs for namespace RDKit::MMPA::detail Generating docs for namespace RDKit::MolAlign Generating docs for compound RDKit::MolAlign::MolAlignException... Generating docs for compound RDKit::MolAlign::O3AFuncData... Generating docs for compound RDKit::MolAlign::O3AConstraint... Generating docs for compound RDKit::MolAlign::O3AConstraintVect... Generating docs for compound RDKit::MolAlign::MolHistogram... Generating docs for compound RDKit::MolAlign::LAP... Generating docs for compound RDKit::MolAlign::SDM... Generating docs for compound RDKit::MolAlign::O3A... Generating docs for namespace RDKit::MolAlign::details Generating docs for namespace RDKit::MolDraw2D_detail Generating docs for compound RDKit::MolDraw2D_detail::AtomSymbol... Generating docs for compound RDKit::MolDraw2D_detail::DrawAnnotation... Generating docs for compound RDKit::MolDraw2D_detail::DrawMol... Generating docs for compound RDKit::MolDraw2D_detail::DrawMolMCH... Generating docs for compound RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine... Generating docs for compound RDKit::MolDraw2D_detail::LinePair... Generating docs for compound RDKit::MolDraw2D_detail::DrawMolMCHLasso... Generating docs for compound RDKit::MolDraw2D_detail::DrawShape... Generating docs for compound RDKit::MolDraw2D_detail::DrawShapeArrow... Generating docs for compound RDKit::MolDraw2D_detail::DrawShapeEllipse... Generating docs for compound RDKit::MolDraw2D_detail::DrawShapeSimpleLine... Generating docs for compound RDKit::MolDraw2D_detail::DrawShapePolyLine... Generating docs for compound RDKit::MolDraw2D_detail::DrawShapeSolidWedge... Generating docs for compound RDKit::MolDraw2D_detail::DrawShapeDashedWedge... Generating docs for compound RDKit::MolDraw2D_detail::DrawShapeWavyLine... Generating docs for compound RDKit::MolDraw2D_detail::DrawShapeArc... Generating docs for compound RDKit::MolDraw2D_detail::DrawText... Generating docs for compound RDKit::MolDraw2D_detail::DrawTextCairo... Generating docs for compound RDKit::MolDraw2D_detail::DrawTextFT... Generating docs for compound RDKit::MolDraw2D_detail::DrawTextFTCairo... Generating docs for compound RDKit::MolDraw2D_detail::DrawTextFTJS... Generating docs for compound RDKit::MolDraw2D_detail::DrawTextFTSVG... Generating docs for compound RDKit::MolDraw2D_detail::DrawTextJS... Generating docs for compound RDKit::MolDraw2D_detail::DrawTextNotFT... Generating docs for compound RDKit::MolDraw2D_detail::DrawTextSVG... Generating docs for compound RDKit::MolDraw2D_detail::DrawTextFTQt... Generating docs for compound RDKit::MolDraw2D_detail::DrawTextQt... Generating docs for compound RDKit::MolDraw2D_detail::StringRect... Generating docs for namespace RDKit::MolDraw2DUtils Generating docs for compound RDKit::MolDraw2DUtils::ContourParams... Generating docs for namespace RDKit::MolEnumerator Generating docs for compound RDKit::MolEnumerator::LinkNode... Generating docs for compound RDKit::MolEnumerator::MolEnumeratorOp... Generating docs for compound RDKit::MolEnumerator::PositionVariationOp... Generating docs for compound RDKit::MolEnumerator::LinkNodeOp... Generating docs for compound RDKit::MolEnumerator::RepeatUnitOp... Generating docs for compound RDKit::MolEnumerator::MolEnumeratorParams... Generating docs for namespace RDKit::MolEnumerator::detail Generating docs for namespace RDKit::MolEnumerator::utils Generating docs for namespace RDKit::MolFragmenter Generating docs for compound RDKit::MolFragmenter::FragmenterBondType... Generating docs for namespace RDKit::MolHash Generating docs for namespace RDKit::MolInterchange Generating docs for compound RDKit::MolInterchange::JSONParseParameters... Generating docs for compound RDKit::MolInterchange::JSONWriteParameters... Generating docs for namespace RDKit::MolOps Generating docs for compound RDKit::MolOps::AddHsParameters... Generating docs for compound RDKit::MolOps::RemoveHsParameters... Generating docs for compound RDKit::MolOps::AdjustQueryParameters... Generating docs for compound RDKit::MolOps::Hybridizations... Generating docs for namespace RDKit::MolOps::details Generating docs for namespace RDKit::MolProcessing Generating docs for namespace RDKit::MolProcessing::details Generating docs for namespace RDKit::MolShapes Generating docs for namespace RDKit::MolStandardize Generating docs for compound RDKit::MolStandardize::AcidBaseCatalogEntry... Generating docs for compound RDKit::MolStandardize::AcidBaseCatalogParams... Generating docs for compound RDKit::MolStandardize::ChargeCorrection... Generating docs for compound RDKit::MolStandardize::Reionizer... Generating docs for compound RDKit::MolStandardize::Uncharger... Generating docs for compound RDKit::MolStandardize::FragmentRemover... Generating docs for compound RDKit::MolStandardize::LargestFragmentChooser... Generating docs for nested compound RDKit::MolStandardize::LargestFragmentChooser::Largest... Generating docs for compound RDKit::MolStandardize::FragmentCatalogEntry... Generating docs for compound RDKit::MolStandardize::FragmentCatalogParams... Generating docs for compoun/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganGenerator.h:208: warning: argument countSimulation from the argument list of RDKit::MorganFingerprint::getMorganGenerator has multiple @param documentation sections /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganGenerator.h:208: warning: argument includeChirality from the argument list of RDKit::MorganFingerprint::getMorganGenerator has multiple @param documentation sections /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganGenerator.h:208: warning: argument onlyNonzeroInvariants from the argument list of RDKit::MorganFingerprint::getMorganGenerator has multiple @param documentation sections /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganGenerator.h:273: warning: argument countSimulation from the argument list of RDKit::MorganFingerprint::getMorganGenerator has multiple @param documentation sections /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganGenerator.h:273: warning: argument includeChirality from the argument list of RDKit::MorganFingerprint::getMorganGenerator has multiple @param documentation sections /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganGenerator.h:273: warning: argument onlyNonzeroInvariants from the argument list of RDKit::MorganFingerprint::getMorganGenerator has multiple @param documentation sections /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintGenerator.h:123: warning: The following parameters of RDKit::MorganFingerprint::MorganAtomEnv::getBitId(FingerprintArguments *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, AdditionalOutput *AdditionalOutput, const bool hashResults=false, const std::uint64_t fpSize=0) const are not documented: parameter 'AdditionalOutput' parameter 'fpSize' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/MorganFingerprints.h:117: warning: The following parameter of RDKit::MorganFingerprints::getHashedFingerprint(const ROMol &mol, unsigned int radius, unsigned int nBits=2048, std::vector< boost::uint32_t > *invariants=nullptr, const std::vector< boost::uint32_t > *fromAtoms=nullptr, bool useChirality=false, bool useBondTypes=true, bool onlyNonzeroInvariants=false, BitInfoMap *atomsSettingBits=nullptr, bool includeRedundantEnvironments=false) is not documented: parameter 'nBits' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintGenerator.h:123: warning: The following parameters of RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(FingerprintArguments *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, AdditionalOutput *AdditionalOutput, bool hashResults=false, const std::uint64_t fpSize=0) const are not documented: parameter 'AdditionalOutput' parameter 'fpSize' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs/ReducedGraphs.h:26: warning: The following parameter of RDKit::ReducedGraphs::generateMolExtendedReducedGraph(const ROMol &mol, std::vector< boost::dynamic_bitset<> > *atomTypes=nullptr) is not documented: parameter 'atomTypes' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/SanitizeRxn.h:129: warning: argument 'operationThatFailed' of command @param is not found in the argument list of RDKit::RxnOps::sanitizeRxn(ChemicalReaction &rxn, unsigned int &operationsThatFailed, unsigned int sanitizeOps=SANITIZE_ALL, const MolOps::AdjustQueryParameters ¶ms=DefaultRxnAdjustParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/SanitizeRxn.h:129: warning: The following parameters of RDKit::RxnOps::sanitizeRxn(ChemicalReaction &rxn, unsigned int &operationsThatFailed, unsigned int sanitizeOps=SANITIZE_ALL, const MolOps::AdjustQueryParameters ¶ms=DefaultRxnAdjustParams()) are not documented: parameter 'operationsThatFailed' parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SmilesParse/SmilesWrite.h:98: warning: argument 'bondIn' of command @param is not found in the argument list of RDKit::SmilesWrite::GetAtomSmiles(const Atom *atom, bool doKekule=false, const Bond *=nullptr, bool allHsExplicit=false, bool isomericSmiles=true) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpace.h:246: warning: The following parameter of RDKit::SynthonSpaceSearch::SynthonSpace::readTextFile(const std::string &inFilename, bool &cancelled) is not documented: parameter 'cancelled' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpace.h:198: warning: The following parameter of RDKit::SynthonSpaceSearch::SynthonSpace::substructureSearch(const GeneralizedSubstruct::ExtendedQueryMol &query, const SubstructMatchParameters &matchParams=SubstructMatchParameters(), const SynthonSpaceSearchParams ¶ms=SynthonSpaceSearchParams()) is not documented: parameter 'matchParams' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/SynthonSpace.h:184: warning: The following parameter of RDKit::SynthonSpaceSearch::SynthonSpace::substructureSearch(const ROMol &query, const SubstructMatchParameters &matchParams=SubstructMatchParameters(), const SynthonSpaceSearchParams ¶ms=SynthonSpaceSearchParams()) is not documented: parameter 'matchParams' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:94: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(bool includeChirality=false, uint32_t torsionAtomCount=4, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, bool countSimulation=true, std::uint32_t fpSize=2048, std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, bool ownsAtomInvGen=false) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:94: warning: The following parameter of RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(bool includeChirality=false, uint32_t torsionAtomCount=4, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, bool countSimulation=true, std::uint32_t fpSize=2048, std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, bool ownsAtomInvGen=false) is not documented: parameter 'countSimulation' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:32: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(const bool includeChirality=false, const uint32_t torsionAtomCount=4, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:32: warning: The following parameter of RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(const bool includeChirality=false, const uint32_t torsionAtomCount=4, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048) is not documented: parameter 'countSimulation' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:68: warning: The following parameter of RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv::TopologicalTorsionAtomEnv(OutputType bitId, INT_VECT atomPath) is not documented: parameter 'atomPath' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/FingerprintGenerator.h:123: warning: The following parameters of RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv::getBitId(FingerprintArguments *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, AdditionalOutput *AdditionalOutput, const bool hashResults=false, const std::uint64_t fpSize=0) const are not documented: parameter 'AdditionalOutput' parameter 'fpSize' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/CDXMLParser.h:122: warning: argument 'fileName' of command @param is not found in the argument list of RDKit::v1::CDXMLFileToMols(const std::string &filename, bool sanitize=true, bool removeHs=true) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/CDXMLParser.h:122: warning: The following parameter of RDKit::v1::CDXMLFileToMols(const std::string &filename, bool sanitize=true, bool removeHs=true) is not documented: parameter 'filename' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/FileParsers.h:121: warning: argument line from the argument list of RDKit::v1::MolDataStreamToMol has multiple @param documentation sections d RDKit::MolStandardize::MetalDisconnectorOptions... Generating docs for compound RDKit::MolStandardize::MetalDisconnector... Generating docs for compound RDKit::MolStandardize::CleanupParameters... Generating docs for compound RDKit::MolStandardize::Normalizer... Generating docs for compound RDKit::MolStandardize::PipelineOptions... Generating docs for compound RDKit::MolStandardize::PipelineLogEntry... Generating docs for compound RDKit::MolStandardize::PipelineResult... Generating docs for compound RDKit::MolStandardize::Pipeline... Generating docs for compound RDKit::MolStandardize::Tautomer... Generating docs for compound RDKit::MolStandardize::TautomerEnumeratorResult... Generating docs for nested compound RDKit::MolStandardize::TautomerEnumeratorResult::const_iterator... Generating docs for compound RDKit::MolStandardize::TautomerEnumeratorCallback... Generating docs for compound RDKit::MolStandardize::TautomerEnumerator... Generating docs for compound RDKit::MolStandardize::TautomerCatalogEntry... Generating docs for compound RDKit::MolStandardize::TautomerTransform... Generating docs for compound RDKit::MolStandardize::TautomerCatalogParams... Generating docs for compound RDKit::MolStandardize::TransformCatalogEntry... Generating docs for compound RDKit::MolStandardize::TransformCatalogParams... Generating docs for compound RDKit::MolStandardize::ValidationMethod... Generating docs for compound RDKit::MolStandardize::CompositeValidation... Generating docs for compound RDKit::MolStandardize::RDKitValidation... Generating docs for compound RDKit::MolStandardize::NoAtomValidation... Generating docs for compound RDKit::MolStandardize::FragmentValidation... Generating docs for compound RDKit::MolStandardize::NeutralValidation... Generating docs for compound RDKit::MolStandardize::IsotopeValidation... Generating docs for compound RDKit::MolStandardize::MolVSValidation... Generating docs for compound RDKit::MolStandardize::AllowedAtomsValidation... Generating docs for compound RDKit::MolStandardize::DisallowedAtomsValidation... Generating docs for compound RDKit::MolStandardize::DisallowedRadicalValidation... Generating docs for compound RDKit::MolStandardize::FeaturesValidation... Generating docs for compound RDKit::MolStandardize::Is2DValidation... Generating docs for compound RDKit::MolStandardize::Layout2DValidation... Generating docs for compound RDKit::MolStandardize::StereoValidation... Generating docs for namespace RDKit::MolStandardize::defaults Generating docs for namespace RDKit::MolStandardize::Operations Generating docs for namespace RDKit::MolStandardize::TautomerScoringFunctions Generating docs for compound RDKit::MolStandardize::TautomerScoringFunctions::SubstructTerm... Generating docs for namespace RDKit::MorganFingerprint Generating docs for compound RDKit::MorganFingerprint::MorganAtomInvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganBondInvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganArguments... Generating docs for compound RDKit::MorganFingerprint::MorganAtomEnv< OutputType >... Generating docs for compound RDKit::MorganFingerprint::MorganEnvGenerator< OutputType >... Generating docs for namespace RDKit::MorganFingerprints Generating docs for compound RDKit::MorganFingerprints::ss_matcher... Generating docs for namespace RDKit::PicklerOps Generating docs for namespace RDKit::PNGData Generating docs for namespace RDKit::QueryOps Generating docs for namespace RDKit::RascalMCES Generating docs for compound RDKit::RascalMCES::PartitionSet... Generating docs for compound RDKit::RascalMCES::RascalClusterOptions... Generating docs for compound RDKit::RascalMCES::RascalOptions... Generating docs for compound RDKit::RascalMCES::RascalResult... Generating docs for namespace RDKit::RascalMCES::details Generating docs for compound RDKit::RascalMCES::details::ClusNode... Generating docs for namespace RDKit::RDKitFP Generating docs for compound RDKit::RDKitFP::RDKitFPArguments... Generating docs for compound RDKit::RDKitFP::RDKitFPAtomInvGenerator... Generating docs for compound RDKit::RDKitFP::RDKitFPAtomEnv< OutputType >... Generating docs for compound RDKit::RDKitFP::RDKitFPEnvGenerator< OutputType >... Generating docs for namespace RDKit::RDKitFPUtils Generating docs for namespace RDKit::RDTypeTag Generating docs for namespace RDKit::RDTypeTag::detail Generating docs for compound RDKit::RDTypeTag::detail::Value... Generating docs for namespace RDKit::ReactionRunnerUtils Generating docs for namespace RDKit::ReducedGraphs Generating docs for namespace RDKit::RxnOps Generating docs for namespace RDKit::ScaffoldNetwork Generating docs for compound RDKit::ScaffoldNetwork::ScaffoldNetworkParams... Generating docs for compound RDKit::ScaffoldNetwork::NetworkEdge... Generating docs for compound RDKit::ScaffoldNetwork::ScaffoldNetwork... Generating docs for namespace RDKit::ScaffoldNetwork::detail Generating docs for namespace RDKit::SGroupParsing Generating docs for namespace RDKit::SGroupWriting Generating docs for namespace RDKit::SLNParse Generating docs for compound RDKit::SLNParse::AttribType... Generating docs for namespace RDKit::SmartsWrite Generating docs for namespace RDKit::SmilesParse Generating docs for compound RDKit::SmilesParse::SmilesParseException... Generating docs for namespace RDKit::SmilesWrite Generating docs for namespace RDKit::SmilesWrite::detail Generating docs for namespace RDKit::StructureCheck Generating docs for compound RDKit::StructureCheck::ChargeFix... Generating docs for compound RDKit::StructureCheck::Ligand... Generating docs for compound RDKit::StructureCheck::AugmentedAtom... Generating docs for compound RDKit::StructureCheck::IncEntry... Generating docs for compound RDKit::StructureCheck::PathEntry... Generating docs for compound RDKit::StructureCheck::StructCheckerOptions... Generating docs for compound RDKit::StructureCheck::StructChecker... Generating docs for compound RDKit::StructureCheck::StructCheckTautomer... Generating docs for compound RDKit::StructureCheck::Neighbourhood... Generating docs for namespace RDKit::Subgraphs Generating docs for namespace RDKit::SubstanceGroupChecks Generating docs for namespace RDKit::SynthonSpaceSearch Generating docs for compound RDKit::SynthonSpaceSearch::SearchResults... Generating docs for compound RDKit::SynthonSpaceSearch::Synthon... Generating docs for compound RDKit::SynthonSpaceSearch::SynthonSet... Generating docs for compound RDKit::SynthonSpaceSearch::SynthonSpaceSearchParams... Generating docs for compound RDKit::SynthonSpaceSearch::SynthonSpace... Generating docs for compound RDKit::SynthonSpaceSearch::SynthonSpaceFingerprintSearcher... Generating docs for compound RDKit::SynthonSpaceSearch::SynthonSpaceHitSet... Generating docs for compound RDKit::SynthonSpaceSearch::SynthonSpaceFPHitSet... Generating docs for compound RDKit::SynthonSpaceSearch::SynthonSpaceRascalSearcher... Generating docs for compound RDKit::SynthonSpaceSearch::SynthonSpaceSearcher... Generating docs for compound RDKit::SynthonSpaceSearch::SynthonSpaceSubstructureSearcher... Generating docs for namespace RDKit::SynthonSpaceSearch::details Generating docs for compound RDKit::SynthonSpaceSearch::details::MemoryMappedFileReader... Generating docs for compound RDKit::SynthonSpaceSearch::details::Stepper... Generating docs for namespace RDKit::TopologicalTorsion Generating docs for compound RDKit::TopologicalTorsion::TopologicalTorsionArguments... Generating docs for compound RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv< OutputType >... Generating docs for compound RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator< OutputType >... Generating docs for namespace RDKit::UFF Generating docs for namespace RDKit::UFF::Tools Generating docs for compound RDKit::UFF::Tools::DefaultTorsionBondSmarts... Generating docs for namespace RDKit::Utils Generating docs for compound RDKit::Utils::LocaleSwitcher... Generating docs for namespace RDKit::Utils::detail Generating docs for namespace RDKit::v1 Generating docs for compound R/build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/CDXMLParser.h:66: warning: argument 'fileName' of command @param is not found in the argument list of RDKit::v2::CDXMLParser::MolsFromCDXMLFile(const std::string &filename, const CDXMLParserParams ¶ms=CDXMLParserParams(true, true, CDXMLFormat::Auto)) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/CDXMLParser.h:66: warning: The following parameter of RDKit::v2::CDXMLParser::MolsFromCDXMLFile(const std::string &filename, const CDXMLParserParams ¶ms=CDXMLParserParams(true, true, CDXMLFormat::Auto)) is not documented: parameter 'filename' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:176: warning: argument 'sanitize' of command @param is not found in the argument list of RDKit::v2::FileParsers::SDMolSupplier::SDMolSupplier(const std::string &fileName, const MolFileParserParams ¶ms=MolFileParserParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:176: warning: argument 'removeHs' of command @param is not found in the argument list of RDKit::v2::FileParsers::SDMolSupplier::SDMolSupplier(const std::string &fileName, const MolFileParserParams ¶ms=MolFileParserParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:176: warning: argument 'strictParsing' of command @param is not found in the argument list of RDKit::v2::FileParsers::SDMolSupplier::SDMolSupplier(const std::string &fileName, const MolFileParserParams ¶ms=MolFileParserParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:176: warning: The following parameter of RDKit::v2::FileParsers::SDMolSupplier::SDMolSupplier(const std::string &fileName, const MolFileParserParams ¶ms=MolFileParserParams()) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:261: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::v2::FileParsers::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName, const SmilesMolSupplierParams ¶ms=SmilesMolSupplierParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:261: warning: argument 'smilesColumn' of command @param is not found in the argument list of RDKit::v2::FileParsers::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName, const SmilesMolSupplierParams ¶ms=SmilesMolSupplierParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:261: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::v2::FileParsers::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName, const SmilesMolSupplierParams ¶ms=SmilesMolSupplierParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:261: warning: argument 'titleLine' of command @param is not found in the argument list of RDKit::v2::FileParsers::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName, const SmilesMolSupplierParams ¶ms=SmilesMolSupplierParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:261: warning: argument 'sanitize' of command @param is not found in the argument list of RDKit::v2::FileParsers::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName, const SmilesMolSupplierParams ¶ms=SmilesMolSupplierParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:261: warning: The following parameter of RDKit::v2::FileParsers::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName, const SmilesMolSupplierParams ¶ms=SmilesMolSupplierParams()) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:353: warning: argument 'nameRecord' of command @param is not found in the argument list of RDKit::v2::FileParsers::TDTMolSupplier::TDTMolSupplier(const std::string &fileName, const TDTMolSupplierParams ¶ms=TDTMolSupplierParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:353: warning: argument 'confId2D' of command @param is not found in the argument list of RDKit::v2::FileParsers::TDTMolSupplier::TDTMolSupplier(const std::string &fileName, const TDTMolSupplierParams ¶ms=TDTMolSupplierParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:353: warning: argument 'confId3D' of command @param is not found in the argument list of RDKit::v2::FileParsers::TDTMolSupplier::TDTMolSupplier(const std::string &fileName, const TDTMolSupplierParams ¶ms=TDTMolSupplierParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:353: warning: argument 'sanitize' of command @param is not found in the argument list of RDKit::v2::FileParsers::TDTMolSupplier::TDTMolSupplier(const std::string &fileName, const TDTMolSupplierParams ¶ms=TDTMolSupplierParams()) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/FileParsers/MolSupplier.h:353: warning: The following parameter of RDKit::v2::FileParsers::TDTMolSupplier::TDTMolSupplier(const std::string &fileName, const TDTMolSupplierParams ¶ms=TDTMolSupplierParams()) is not documented: parameter 'params' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/MIFDescriptors.h:117: warning: argument 'pos' of command @param is not found in the argument list of RDMIF::Coulomb::Coulomb(const std::vector< double > &charges, const std::vector< RDGeom::Point3D > &positions, double probeCharge=1.0, bool absVal=false, double alpha=0.0, double cutoff=1.0) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/MIFDescriptors.h:117: warning: The following parameter of RDMIF::Coulomb::Coulomb(const std::vector< double > &charges, const std::vector< RDGeom::Point3D > &positions, double probeCharge=1.0, bool absVal=false, double alpha=0.0, double cutoff=1.0) is not documented: parameter 'positions' /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/MIFDescriptors.h:220: warning: argument 'pos' of command @param is not found in the argument list of RDMIF::CoulombDielectric::CoulombDielectric(const std::vector< double > &charges, const std::vector< RDGeom::Point3D > &positions, double probeCharge=1.0, bool absVal=false, double alpha=0.0, double cutoff=1.0, double epsilon=80.0, double xi=4.0) /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/MIFDescriptors.h:220: warning: The following parameter of RDMIF::CoulombDielectric::CoulombDielectric(const std::vector< double > &charges, const std::vector< RDGeom::Point3D > &positions, double probeCharge=1.0, bool absVal=false, double alpha=0.0, double cutoff=1.0, double epsilon=80.0, double xi=4.0) is not documented: parameter 'positions' /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/HierarchicalClusterPicker.h:48: warning: The following parameter of RDPickers::HierarchicalClusterPicker::pick(const double *distMat, unsigned int poolSize, unsigned int pickSize) const is not documented: parameter 'distMat' /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/LeaderPicker.h:48: warning: argument 'firstPicks' of command @param is not found in the argument list of RDPickers::LeaderPicker::lazyPick(T &func, unsigned int poolSize, unsigned int pickSize) const /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/LeaderPicker.h:48: warning: argument 'seed' of command @param is not found in the argument list of RDPickers::LeaderPicker::lazyPick(T &func, unsigned int poolSize, unsigned int pickSize) const /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/LeaderPicker.h:87: warning: The following parameters of RDPickers::LeaderPicker::pick(const double *distMat, unsigned int poolSize, unsigned int pickSize, const RDKit::INT_VECT &firstPicks, double threshold, int nthreads) const are not documented: parameter 'threshold' parameter 'nthreads' /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/MaxMinPicker.h:44: warning: argument 'firstPicks' of command @param is not found in the argument list of RDPickers::MaxMinPicker::lazyPick(T &func, unsigned int poolSize, unsigned int pickSize) const /build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/MaxMinPicker.h:44: warning: argument 'seed' of command @param is not found in the argument list of RDPickers::MaxMinPicker::lazyPick(T &func, unsigned int poolSize, unsigned int pickSize) const DKit::v1::MolSupplier... Generating docs for compound RDKit::v1::ForwardSDMolSupplier... Generating docs for compound RDKit::v1::SDMolSupplier... Generating docs for compound RDKit::v1::SmilesMolSupplier... Generating docs for compound RDKit::v1::TDTMolSupplier... Generating docs for compound RDKit::v1::SmilesParserParams... Generating docs for compound RDKit::v1::SmartsParserParams... Generating docs for compound RDKit::v1::MolFileUnhandledFeatureException... Generating docs for compound RDKit::v1::PDBParserParams... Generating docs for compound RDKit::v1::SmilesParseException... Generating docs for namespace RDKit::v2 Generating docs for namespace RDKit::v2::CDXMLParser Generating docs for compound RDKit::v2::CDXMLParser::CDXMLParserParams... Generating docs for namespace RDKit::v2::FileParsers Generating docs for compound RDKit::v2::FileParsers::MolFileUnhandledFeatureException... Generating docs for compound RDKit::v2::FileParsers::MolFileParserParams... Generating docs for compound RDKit::v2::FileParsers::MolFromSCSRParams... Generating docs for compound RDKit::v2::FileParsers::TPLParserParams... Generating docs for compound RDKit::v2::FileParsers::Mol2ParserParams... Generating docs for compound RDKit::v2::FileParsers::PDBParserParams... Generating docs for compound RDKit::v2::FileParsers::MolSupplier... Generating docs for compound RDKit::v2::FileParsers::ForwardSDMolSupplier... Generating docs for compound RDKit::v2::FileParsers::SDMolSupplier... Generating docs for compound RDKit::v2::FileParsers::SmilesMolSupplierParams... Generating docs for compound RDKit::v2::FileParsers::SmilesMolSupplier... Generating docs for compound RDKit::v2::FileParsers::TDTMolSupplierParams... Generating docs for compound RDKit::v2::FileParsers::TDTMolSupplier... Generating docs for namespace RDKit::v2::MarvinParser Generating docs for compound RDKit::v2::MarvinParser::MrvParserParams... Generating docs for namespace RDKit::v2::ReactionParser Generating docs for compound RDKit::v2::ReactionParser::ReactionSmartsParserParams... Generating docs for namespace RDKit::v2::SmilesParse Generating docs for compound RDKit::v2::SmilesParse::SmilesParserParams... Generating docs for compound RDKit::v2::SmilesParse::SmartsParserParams... Generating docs for compound RDKit::v2::SmilesParse::SmilesParseException... Generating docs for namespace RDLog Generating docs for compound RDLog::LogStateSetter... Generating docs for namespace RDMIF Generating docs for compound RDMIF::Coulomb... Generating docs for compound RDMIF::CoulombDielectric... Generating docs for compound RDMIF::VdWaals... Generating docs for compound RDMIF::MMFFVdWaals... Generating docs for compound RDMIF::UFFVdWaals... Generating docs for compound RDMIF::HBond... Generating docs for compound RDMIF::Hydrophilic... Generating docs for namespace RDNumeric Generating docs for compound RDNumeric::Matrix< TYPE >... Generating docs for compound RDNumeric::SquareMatrix< TYPE >... Generating docs for compound RDNumeric::SymmMatrix< TYPE >... Generating docs for compound RDNumeric::Vector< TYPE >... Generating docs for namespace RDNumeric::Alignments Generating docs for namespace RDNumeric::EigenSolvers Generating docs for namespace RDPickers Generating docs for compound RDPickers::DistPicker... Generating docs for compound RDPickers::HierarchicalClusterPicker... Generating docs for compound RDPickers::LeaderPicker... Generating docs for compound RDPickers::LeaderPickerState< T >... Generating docs for compound RDPickers::MaxMinPicker... Generating docs for compound RDPickers::MaxMinPickInfo... Generating docs for namespace RingUtils Generating docs for namespace SmilesParseOps Generating docs for namespace SmilesParseOps::detail Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 16680/65536 hits=66662 misses=21172 symbol lookup cache used 31648/65536 hits=247936 misses=31648 finished... (cd /build/reproducible-path/rdkit-202503.6/Docs/Book; RDBASE=/build/reproducible-path/rdkit-202503.6 /usr/bin/make html) make[2]: Entering directory '/build/reproducible-path/rdkit-202503.6/Docs/Book' mkdir -p _build/html/cppapi cp -r /build/reproducible-path/rdkit-202503.6/Code/docs/* _build/html/cppapi cp -r C++Examples _build/html/ sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v8.2.3 loading translations [en]... done WARNING: html_static_path entry '_static' does not exist myst v4.0.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=set(), disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 267 source files that are out of date updating environment: [new config] 267 added, 0 changed, 0 removed reading sources... [ 0%] BackwardsIncompatibleChanges reading sources... [ 1%] Cartridge reading sources... [ 1%] Cookbook reading sources... [ 1%] GettingStartedInC++ reading sources... [ 2%] GettingStartedInPython reading sources... [ 2%] GettingStartedWithContributing reading sources... [ 3%] Install reading sources... [ 3%] Overview reading sources... [ 3%] RDKit_Book reading sources... [ 4%] api-docs reading sources... [ 4%] data/README reading sources... [ 4%] index reading sources... [ 5%] source/rdkit reading sources... [ 5%] source/rdkit.Avalon reading sources... [ 6%] source/rdkit.Avalon.pyAvalonTools reading sources... [ 6%] source/rdkit.Chem reading sources... [ 6%] source/rdkit.Chem.AllChem reading sources... [ 7%] source/rdkit.Chem.AtomPairs reading sources... [ 7%] source/rdkit.Chem.AtomPairs.Pairs reading sources... [ 7%] source/rdkit.Chem.AtomPairs.Sheridan reading sources... [ 8%] source/rdkit.Chem.AtomPairs.Torsions reading sources... [ 8%] source/rdkit.Chem.AtomPairs.Utils reading sources... [ 9%] source/rdkit.Chem.BRICS reading sources... [ 9%] source/rdkit.Chem.BuildFragmentCatalog reading sources... [ 9%] source/rdkit.Chem.ChemUtils reading sources... [ 10%] source/rdkit.Chem.ChemUtils.AlignDepict reading sources... [ 10%] source/rdkit.Chem.ChemUtils.BulkTester reading sources... [ 10%] source/rdkit.Chem.ChemUtils.DescriptorUtilities reading sources... [ 11%] source/rdkit.Chem.ChemUtils.SDFToCSV reading sources... [ 11%] source/rdkit.Chem.ChemUtils.TemplateExpand reading sources... [ 12%] source/rdkit.Chem.ChemicalFeatures reading sources... [ 12%] source/rdkit.Chem.ChemicalForceFields reading sources... [ 12%] source/rdkit.Chem.Crippen reading sources... [ 13%] source/rdkit.Chem.Descriptors reading sources... [ 13%] source/rdkit.Chem.Descriptors3D reading sources... [ 13%] source/rdkit.Chem.Draw reading sources... [ 14%] source/rdkit.Chem.Draw.IPythonConsole reading sources... [ 14%] source/rdkit.Chem.Draw.MolDrawing reading sources... [ 15%] source/rdkit.Chem.Draw.SimilarityMaps reading sources... [ 15%] source/rdkit.Chem.Draw.rdMolDraw2D reading sources... [ 15%] source/rdkit.Chem.Draw.rdMolDraw2DQt reading sources... [ 16%] source/rdkit.Chem.EState reading sources... [ 16%] source/rdkit.Chem.EState.AtomTypes reading sources... [ 16%] source/rdkit.Chem.EState.EState reading sources... [ 17%] source/rdkit.Chem.EState.EState_VSA reading sources... [ 17%] source/rdkit.Chem.EState.Fingerprinter reading sources... [ 18%] source/rdkit.Chem.EnumerateHeterocycles reading sources... [ 18%] source/rdkit.Chem.EnumerateStereoisomers reading sources... [ 18%] source/rdkit.Chem.FastSDMolSupplier reading sources... [ 19%] source/rdkit.Chem.FeatFinderCLI reading sources... [ 19%] source/rdkit.Chem.FeatMaps reading sources... [ 19%] source/rdkit.Chem.FeatMaps.FeatMapParser reading sources... [ 20%] source/rdkit.Chem.FeatMaps.FeatMapPoint reading sources... [ 20%] source/rdkit.Chem.FeatMaps.FeatMapUtils reading sources... [ 21%] source/rdkit.Chem.FeatMaps.FeatMaps reading sources... [ 21%] source/rdkit.Chem.Features reading sources... [ 21%] source/rdkit.Chem.Features.FeatDirUtilsRD reading sources... [ 22%] source/rdkit.Chem.Features.ShowFeats reading sources... [ 22%] source/rdkit.Chem.FilterCatalog reading sources... [ 22%] source/rdkit.Chem.Fingerprints reading sources... [ 23%] source/rdkit.Chem.Fingerprints.ClusterMols reading sources... [ 23%] source/rdkit.Chem.Fingerprints.DbFpSupplier reading sources... [ 24%] source/rdkit.Chem.Fingerprints.FingerprintMols reading sources... [ 24%] source/rdkit.Chem.Fingerprints.MolSimilarity reading sources... [ 24%] source/rdkit.Chem.Fingerprints.SimilarityScreener reading sources... [ 25%] source/rdkit.Chem.Fraggle reading sources... [ 25%] source/rdkit.Chem.Fraggle.FraggleSim reading sources... [ 25%] source/rdkit.Chem.FragmentCatalog reading sources... [ 26%] source/rdkit.Chem.FragmentMatcher reading sources... [ 26%] source/rdkit.Chem.Fragments reading sources... [ 27%] source/rdkit.Chem.FunctionalGroups reading sources... [ 27%] source/rdkit.Chem.GraphDescriptors reading sources... [ 27%] source/rdkit.Chem.Graphs reading sources... [ 28%] source/rdkit.Chem.Lipinski reading sources... [ 28%] source/rdkit.Chem.MACCSkeys reading sources... [ 28%] source/rdkit.Chem.MolCatalog reading sources... [ 29%] source/rdkit.Chem.MolDb reading sources... [ 29%] source/rdkit.Chem.MolDb.FingerprintUtils reading sources... [ 30%] source/rdkit.Chem.MolDb.Loader reading sources... [ 30%] source/rdkit.Chem.MolDb.Loader_orig reading sources... [ 30%] source/rdkit.Chem.MolDb.Loader_sa reading sources... [ 31%] source/rdkit.Chem.MolKey reading sources... [ 31%] source/rdkit.Chem.MolKey.InchiInfo reading sources... [ 31%] source/rdkit.Chem.MolKey.MolKey reading sources... [ 32%] source/rdkit.Chem.MolStandardize reading sources... [ 32%] source/rdkit.Chem.MolStandardize.rdMolStandardize reading sources... [ 33%] source/rdkit.Chem.MolSurf reading sources... [ 33%] source/rdkit.Chem.PandasTools reading sources... [ 33%] source/rdkit.Chem.PeriodicTable reading sources... [ 34%] source/rdkit.Chem.Pharm2D reading sources... [ 34%] source/rdkit.Chem.Pharm2D.Generate reading sources... [ 34%] source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D reading sources... [ 35%] source/rdkit.Chem.Pharm2D.Matcher reading sources... [ 35%] source/rdkit.Chem.Pharm2D.SigFactory reading sources... [ 36%] source/rdkit.Chem.Pharm2D.Utils reading sources... [ 36%] source/rdkit.Chem.Pharm3D reading sources... [ 36%] source/rdkit.Chem.Pharm3D.EmbedLib reading sources... [ 37%] source/rdkit.Chem.Pharm3D.ExcludedVolume reading sources... [ 37%] source/rdkit.Chem.Pharm3D.Pharmacophore reading sources... [ 37%] source/rdkit.Chem.PropertyMol reading sources... [ 38%] source/rdkit.Chem.PyMol reading sources... [ 38%] source/rdkit.Chem.QED reading sources... [ 39%] source/rdkit.Chem.Randomize reading sources... [ 39%] source/rdkit.Chem.Recap reading sources... [ 39%] source/rdkit.Chem.ReducedGraphs reading sources... [ 40%] source/rdkit.Chem.RegistrationHash reading sources... [ 40%] source/rdkit.Chem.SATIS reading sources... [ 40%] source/rdkit.Chem.SaltRemover reading sources... [ 41%] source/rdkit.Chem.Scaffolds reading sources... [ 41%] source/rdkit.Chem.Scaffolds.MurckoScaffold reading sources... [ 42%] source/rdkit.Chem.Scaffolds.rdScaffoldNetwork reading sources... [ 42%] source/rdkit.Chem.ShowMols reading sources... [ 42%] source/rdkit.Chem.SimpleEnum reading sources... [ 43%] source/rdkit.Chem.SimpleEnum.Enumerator reading sources... [ 43%] source/rdkit.Chem.SpacialScore reading sources... [ 43%] source/rdkit.Chem.Subshape reading sources... [ 44%] source/rdkit.Chem.Subshape.BuilderUtils reading sources... [ 44%] source/rdkit.Chem.Subshape.SubshapeAligner reading sources... [ 45%] source/rdkit.Chem.Subshape.SubshapeBuilder reading sources... [ 45%] source/rdkit.Chem.Subshape.SubshapeObjects reading sources... [ 45%] source/rdkit.Chem.Suppliers reading sources... [ 46%] source/rdkit.Chem.Suppliers.DbMolSupplier reading sources... [ 46%] source/rdkit.Chem.Suppliers.MolSupplier reading sources... [ 46%] source/rdkit.Chem.TemplateAlign reading sources... [ 47%] source/rdkit.Chem.TorsionFingerprints reading sources... [ 47%] source/rdkit.Chem.fmcs reading sources... [ 48%] source/rdkit.Chem.fmcs.fmcs reading sources... [ 48%] source/rdkit.Chem.inchi reading sources... [ 48%] source/rdkit.Chem.rdAbbreviations reading sources... [ 49%] source/rdkit.Chem.rdCIPLabeler reading sources... [ 49%] source/rdkit.Chem.rdChemReactions reading sources... [ 49%] source/rdkit.Chem.rdChemicalFeatures reading sources... [ 50%] source/rdkit.Chem.rdCoordGen reading sources... [ 50%] source/rdkit.Chem.rdDepictor reading sources... [ 51%] source/rdkit.Chem.rdDeprotect reading sources... [ 51%] source/rdkit.Chem.rdDetermineBonds reading sources... [ 51%] source/rdkit.Chem.rdDistGeom reading sources... [ 52%] source/rdkit.Chem.rdEHTTools reading sources... [ 52%] source/rdkit.Chem.rdEnumerateStereoisomers reading sources... [ 52%] source/rdkit.Chem.rdFMCS reading sources... [ 53%] source/rdkit.Chem.rdFingerprintGenerator reading sources... [ 53%] source/rdkit.Chem.rdForceFieldHelpers reading sources... [ 54%] source/rdkit.Chem.rdFreeSASA reading sources... [ 54%] source/rdkit.Chem.rdGeneralizedSubstruct reading sources... [ 54%] source/rdkit.Chem.rdMHFPFingerprint reading sources... [ 55%] source/rdkit.Chem.rdMIF reading sources... [ 55%] source/rdkit.Chem.rdMMPA reading sources... [ 55%] source/rdkit.Chem.rdMolAlign reading sources... [ 56%] source/rdkit.Chem.rdMolCatalog reading sources... [ 56%] source/rdkit.Chem.rdMolChemicalFeatures reading sources... [ 57%] source/rdkit.Chem.rdMolDescriptors reading sources... [ 57%] source/rdkit.Chem.rdMolEnumerator reading sources... [ 57%] source/rdkit.Chem.rdMolHash reading sources... [ 58%] source/rdkit.Chem.rdMolInterchange reading sources... [ 58%] source/rdkit.Chem.rdMolProcessing reading sources... [ 58%] source/rdkit.Chem.rdMolTransforms reading sources... [ 59%] source/rdkit.Chem.rdPartialCharges reading sources... [ 59%] source/rdkit.Chem.rdRGroupDecomposition reading sources... [ 60%] source/rdkit.Chem.rdRascalMCES reading sources... [ 60%] source/rdkit.Chem.rdReducedGraphs reading sources... [ 60%] source/rdkit.Chem.rdSLNParse reading sources... [ 61%] source/rdkit.Chem.rdShapeAlign reading sources... [ 61%] source/rdkit.Chem.rdShapeHelpers reading sources... [ 61%] source/rdkit.Chem.rdSubstructLibrary reading sources... [ 62%] source/rdkit.Chem.rdSynthonSpaceSearch reading sources... [ 62%] source/rdkit.Chem.rdTautomerQuery reading sources... [ 63%] source/rdkit.Chem.rdchem reading sources... [ 63%] source/rdkit.Chem.rdfiltercatalog reading sources... [ 63%] source/rdkit.Chem.rdfragcatalog reading sources... [ 64%] source/rdkit.Chem.rdinchi reading sources... [ 64%] source/rdkit.Chem.rdmolfiles reading sources... [ 64%] source/rdkit.Chem.rdmolops reading sources... [ 65%] source/rdkit.Chem.rdqueries reading sources... [ 65%] source/rdkit.Chem.rdtrajectory reading sources... [ 66%] source/rdkit.DataManip reading sources... [ 66%] source/rdkit.DataManip.Metric reading sources... [ 66%] source/rdkit.DataManip.Metric.rdMetricMatrixCalc reading sources... [ 67%] source/rdkit.DataStructs reading sources... [ 67%] source/rdkit.DataStructs.BitEnsemble reading sources... [ 67%] source/rdkit.DataStructs.BitEnsembleDb reading sources... [ 68%] source/rdkit.DataStructs.BitUtils reading sources... [ 68%] source/rdkit.DataStructs.LazySignature reading sources... [ 69%] source/rdkit.DataStructs.TopNContainer reading sources... [ 69%] source/rdkit.DataStructs.VectCollection reading sources... [ 69%] source/rdkit.DataStructs.cDataStructs reading sources... [ 70%] source/rdkit.Dbase reading sources... [ 70%] source/rdkit.Dbase.DbConnection reading sources... [ 70%] source/rdkit.Dbase.DbInfo reading sources... [ 71%] source/rdkit.Dbase.DbModule reading sources... [ 71%] source/rdkit.Dbase.DbResultSet reading sources... [ 72%] source/rdkit.Dbase.DbUtils reading sources... [ 72%] source/rdkit.Dbase.StorageUtils reading sources... [ 72%] source/rdkit.DistanceGeometry reading sources... [ 73%] source/rdkit.DistanceGeometry.DistGeom reading sources... [ 73%] source/rdkit.ForceField reading sources... [ 73%] source/rdkit.ForceField.rdForceField reading sources... [ 74%] source/rdkit.Geometry reading sources... [ 74%] source/rdkit.Geometry.rdGeometry reading sources... [ 75%] source/rdkit.ML reading sources... [ 75%] source/rdkit.ML.Cluster reading sources... [ 75%] source/rdkit.ML.Cluster.Butina reading sources... [ 76%] source/rdkit.ML.Cluster.ClusterUtils reading sources... [ 76%] source/rdkit.ML.Cluster.ClusterVis reading sources... [ 76%] source/rdkit.ML.Cluster.Clustering reading sources... [ 77%] source/rdkit.ML.Cluster.Clusters reading sources... [ 77%] source/rdkit.ML.Cluster.Murtagh reading sources... [ 78%] source/rdkit.ML.Cluster.Resemblance reading sources... [ 78%] source/rdkit.ML.Cluster.Standardize reading sources... [ 78%] source/rdkit.ML.Data reading sources... [ 79%] source/rdkit.ML.Data.DataUtils reading sources... [ 79%] source/rdkit.ML.Data.FindQuantBounds reading sources... [ 79%] source/rdkit.ML.Data.MLData reading sources... [ 80%] source/rdkit.ML.Data.Quantize reading sources... [ 80%] source/rdkit.ML.Data.SplitData reading sources... [ 81%] source/rdkit.ML.Data.Stats reading sources... [ 81%] source/rdkit.ML.Data.Transforms reading sources... [ 81%] source/rdkit.ML.Data.cQuantize reading sources... [ 82%] source/rdkit.ML.Descriptors reading sources... [ 82%] source/rdkit.ML.Descriptors.CompoundDescriptors reading sources... [ 82%] source/rdkit.ML.Descriptors.Descriptors reading sources... [ 83%] source/rdkit.ML.Descriptors.MoleculeDescriptors reading sources... [ 83%] source/rdkit.ML.Descriptors.Parser reading sources... [ 84%] source/rdkit.ML.InfoTheory reading sources... [ 84%] source/rdkit.ML.InfoTheory.BitClusterer reading sources... [ 84%] source/rdkit.ML.InfoTheory.BitRank reading sources... [ 85%] source/rdkit.ML.InfoTheory.entropy reading sources... [ 85%] source/rdkit.ML.InfoTheory.rdInfoTheory reading sources... [ 85%] source/rdkit.ML.MLUtils reading sources... [ 86%] source/rdkit.ML.MLUtils.VoteImg reading sources... [ 86%] source/rdkit.ML.MatOps reading sources... [ 87%] source/rdkit.ML.SLT reading sources... [ 87%] source/rdkit.ML.SLT.Risk reading sources... [ 87%] source/rdkit.ML.Scoring reading sources... [ 88%] source/rdkit.ML.Scoring.Scoring reading sources... [ 88%] source/rdkit.ML.files reading sources... [ 88%] source/rdkit.Numerics reading sources... [ 89%] source/rdkit.Numerics.rdAlignment reading sources... [ 89%] source/rdkit.RDConfig reading sources... [ 90%] source/rdkit.RDLogger reading sources... [ 90%] source/rdkit.RDPaths reading sources... [ 90%] source/rdkit.RDRandom reading sources... [ 91%] source/rdkit.SimDivFilters reading sources... [ 91%] source/rdkit.SimDivFilters.SimilarityPickers reading sources... [ 91%] source/rdkit.SimDivFilters.rdSimDivPickers reading sources... [ 92%] source/rdkit.TestRunner reading sources... [ 92%] source/rdkit.VLib reading sources... [ 93%] source/rdkit.VLib.Filter reading sources... [ 93%] source/rdkit.VLib.Node reading sources... [ 93%] source/rdkit.VLib.NodeLib reading sources... [ 94%] source/rdkit.VLib.NodeLib.DbMolSupply reading sources... [ 94%] source/rdkit.VLib.NodeLib.DbPickleSupplier reading sources... [ 94%] source/rdkit.VLib.NodeLib.SDSupply reading sources... [ 95%] source/rdkit.VLib.NodeLib.SmartsMolFilter reading sources... [ 95%] source/rdkit.VLib.NodeLib.SmartsRemover reading sources... [ 96%] source/rdkit.VLib.NodeLib.SmilesDupeFilter reading sources... [ 96%] source/rdkit.VLib.NodeLib.SmilesOutput reading sources... [ 96%] source/rdkit.VLib.NodeLib.SmilesSupply reading sources... [ 97%] source/rdkit.VLib.Output reading sources... [ 97%] source/rdkit.VLib.Supply reading sources... [ 97%] source/rdkit.VLib.Transform reading sources... [ 98%] source/rdkit.rdBase reading sources... [ 98%] source/rdkit.utils reading sources... [ 99%] source/rdkit.utils.cactvs reading sources... [ 99%] source/rdkit.utils.chemutils reading sources... [ 99%] source/rdkit.utils.fileutils reading sources... [100%] source/rdkit.utils.listutils reading sources... [100%] source/rdkit.utils.spiral /build/reproducible-path/rdkit-202503.6/Docs/Book/BackwardsIncompatibleChanges.md:49: WARNING: duplicate label changes to canonicalization, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/BackwardsIncompatibleChanges.md [autosectionlabel.BackwardsIncompatibleChanges] /build/reproducible-path/rdkit-202503.6/Docs/Book/Cartridge.md:732: WARNING: duplicate label license, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/BackwardsIncompatibleChanges.md [autosectionlabel.Cartridge] /build/reproducible-path/rdkit-202503.6/Docs/Book/Cookbook.rst:7: WARNING: duplicate label introduction, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Cartridge.md [autosectionlabel.Cookbook] /build/reproducible-path/rdkit-202503.6/Docs/Book/Cookbook.rst:10: WARNING: duplicate label what is this?, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Cartridge.md [autosectionlabel.Cookbook] /build/reproducible-path/rdkit-202503.6/Docs/Book/Cookbook.rst:2581: WARNING: duplicate label license, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Cartridge.md [autosectionlabel.Cookbook] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md:3: WARNING: duplicate label what is this?, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Cookbook.rst [autosectionlabel.GettingStartedInC++] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md:305: WARNING: duplicate label writing molecules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Cookbook.rst [autosectionlabel.GettingStartedInC++] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:1721: WARNING: image file not readable: images/rascal_1.png [image.not_readable] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:1726: WARNING: image file not readable: images/rascal_2.png [image.not_readable] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:1731: WARNING: image file not readable: images/rascal_3.png [image.not_readable] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:12: WARNING: duplicate label what is this?, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:30: WARNING: duplicate label reading single molecules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:104: WARNING: duplicate label reading sets of molecules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:208: WARNING: duplicate label writing molecules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:393: WARNING: duplicate label writing sets of molecules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:434: WARNING: duplicate label working with molecules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:438: WARNING: duplicate label looping over atoms and bonds, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:481: WARNING: duplicate label ring information, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:550: WARNING: duplicate label modifying molecules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:618: WARNING: duplicate label working with 2d molecules: generating depictions, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:668: WARNING: duplicate label working with 3d molecules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:794: WARNING: duplicate label preserving molecules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:850: WARNING: duplicate label drawing molecules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:1089: WARNING: duplicate label substructure searching, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:1154: WARNING: duplicate label stereochemistry in substructure matches, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:1192: WARNING: duplicate label atom map indices in smarts, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:3362: WARNING: duplicate label substructure searching, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:3632: WARNING: duplicate label the sssr problem, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInC++.md [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst:4046: WARNING: duplicate label license, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Cookbook.rst [autosectionlabel.GettingStartedInPython] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md:424: WARNING: duplicate label building rdkit for development, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md [autosectionlabel.GettingStartedWithContributing] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md:430: WARNING: duplicate label where should i put my code?, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md [autosectionlabel.GettingStartedWithContributing] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md:434: WARNING: duplicate label coding standards, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md [autosectionlabel.GettingStartedWithContributing] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md:447: WARNING: duplicate label tests, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md [autosectionlabel.GettingStartedWithContributing] /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md:481: WARNING: duplicate label documentation, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md [autosectionlabel.GettingStartedWithContributing] /build/reproducible-path/rdkit-202503.6/Docs/Book/Install.md:430: WARNING: duplicate label recommended extras, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Install.md [autosectionlabel.Install] /build/reproducible-path/rdkit-202503.6/Docs/Book/Install.md:474: WARNING: duplicate label testing the build (optional, but recommended), other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Install.md [autosectionlabel.Install] /build/reproducible-path/rdkit-202503.6/Docs/Book/Install.md:479: WARNING: duplicate label license, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst [autosectionlabel.Install] /build/reproducible-path/rdkit-202503.6/Docs/Book/Overview.md:106: WARNING: duplicate label license, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Install.md [autosectionlabel.Overview] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:2834: WARNING: Title underline too short. Self-Contained Structure Representations (SCSR) for Macromolecules ******************* [docutils] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:2937: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:2941: WARNING: Bullet list ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:2946: WARNING: Title underline too short. Hydrogen Bonds ------- [docutils] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:3024: ERROR: Error in "image" directive: no content permitted. .. image:: images/WobbleRna.png Full Example of SCSR files: [docutils] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:3027: WARNING: Explicit markup ends without a blank line; unexpected unindent. [docutils] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:179: WARNING: duplicate label aromaticity, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst [autosectionlabel.RDKit_Book] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:388: WARNING: duplicate label dative bonds, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst [autosectionlabel.RDKit_Book] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:702: WARNING: duplicate label stereochemistry, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Cookbook.rst [autosectionlabel.RDKit_Book] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:1431: WARNING: duplicate label chemical features, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst [autosectionlabel.RDKit_Book] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:2633: WARNING: duplicate label introduction, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Cookbook.rst [autosectionlabel.RDKit_Book] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:2731: WARNING: duplicate label rdkit fingerprints, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedInPython.rst [autosectionlabel.RDKit_Book] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:2843: WARNING: duplicate label representation, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst [autosectionlabel.RDKit_Book] /build/reproducible-path/rdkit-202503.6/Docs/Book/RDKit_Book.rst:3099: WARNING: duplicate label license, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/Overview.md [autosectionlabel.RDKit_Book] WARNING: autodoc: failed to import module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Avalon' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Avalon.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.rst [autosectionlabel.source/rdkit.Avalon] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Avalon.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.rst [autosectionlabel.source/rdkit.Avalon] WARNING: autodoc: failed to import module 'Avalon.pyAvalonTools' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.rst:5: WARNING: duplicate label subpackages, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.rst [autosectionlabel.source/rdkit.Chem] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.rst:28: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Avalon.rst [autosectionlabel.source/rdkit.Chem] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.rst:120: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Avalon.rst [autosectionlabel.source/rdkit.Chem] WARNING: autodoc: failed to import module 'Chem.AllChem' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.AtomPairs' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.AtomPairs.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.rst [autosectionlabel.source/rdkit.Chem.AtomPairs] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.AtomPairs.rst:15: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.rst [autosectionlabel.source/rdkit.Chem.AtomPairs] WARNING: autodoc: failed to import module 'Chem.AtomPairs.Pairs' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.AtomPairs.Sheridan' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.AtomPairs.Torsions' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.AtomPairs.Utils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.BRICS' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.BuildFragmentCatalog' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.ChemUtils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.ChemUtils.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.AtomPairs.rst [autosectionlabel.source/rdkit.Chem.ChemUtils] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.ChemUtils.rst:16: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.AtomPairs.rst [autosectionlabel.source/rdkit.Chem.ChemUtils] WARNING: autodoc: failed to import module 'Chem.ChemUtils.AlignDepict' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.ChemUtils.BulkTester' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.ChemUtils.DescriptorUtilities' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.ChemUtils.SDFToCSV' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.ChemUtils.TemplateExpand' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.ChemicalFeatures' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.ChemicalForceFields' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Crippen' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Descriptors' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Descriptors3D' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Draw' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Draw.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.ChemUtils.rst [autosectionlabel.source/rdkit.Chem.Draw] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Draw.rst:16: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.ChemUtils.rst [autosectionlabel.source/rdkit.Chem.Draw] WARNING: autodoc: failed to import module 'Chem.Draw.IPythonConsole' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Draw.MolDrawing' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Draw.SimilarityMaps' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Draw.rdMolDraw2D' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Draw.rdMolDraw2DQt' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.EState' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.EState.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Draw.rst [autosectionlabel.source/rdkit.Chem.EState] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.EState.rst:15: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Draw.rst [autosectionlabel.source/rdkit.Chem.EState] WARNING: autodoc: failed to import module 'Chem.EState.AtomTypes' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.EState.EState' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.EState.EState_VSA' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.EState.Fingerprinter' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.EnumerateHeterocycles' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.EnumerateStereoisomers' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.FastSDMolSupplier' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.FeatFinderCLI' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.FeatMaps' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.FeatMaps.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.EState.rst [autosectionlabel.source/rdkit.Chem.FeatMaps] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.FeatMaps.rst:15: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.EState.rst [autosectionlabel.source/rdkit.Chem.FeatMaps] WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapParser' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapPoint' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapUtils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMaps' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Features' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Features.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.FeatMaps.rst [autosectionlabel.source/rdkit.Chem.Features] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Features.rst:13: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.FeatMaps.rst [autosectionlabel.source/rdkit.Chem.Features] WARNING: autodoc: failed to import module 'Chem.Features.FeatDirUtilsRD' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Features.ShowFeats' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.FilterCatalog' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Fingerprints' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Fingerprints.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Features.rst [autosectionlabel.source/rdkit.Chem.Fingerprints] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Fingerprints.rst:16: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Features.rst [autosectionlabel.source/rdkit.Chem.Fingerprints] WARNING: autodoc: failed to import module 'Chem.Fingerprints.ClusterMols' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Fingerprints.DbFpSupplier' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Fingerprints.FingerprintMols' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Fingerprints.MolSimilarity' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Fingerprints.SimilarityScreener' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Fraggle' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Fraggle.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Fingerprints.rst [autosectionlabel.source/rdkit.Chem.Fraggle] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Fraggle.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Fingerprints.rst [autosectionlabel.source/rdkit.Chem.Fraggle] WARNING: autodoc: failed to import module 'Chem.Fraggle.FraggleSim' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.FragmentCatalog' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.FragmentMatcher' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Fragments' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.FunctionalGroups' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.GraphDescriptors' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Graphs' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Lipinski' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.MACCSkeys' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.MolCatalog' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.MolDb' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.MolDb.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Fraggle.rst [autosectionlabel.source/rdkit.Chem.MolDb] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.MolDb.rst:15: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Fraggle.rst [autosectionlabel.source/rdkit.Chem.MolDb] WARNING: autodoc: failed to import module 'Chem.MolDb.FingerprintUtils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.MolDb.Loader' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_orig' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_sa' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.MolKey' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.MolKey.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.MolDb.rst [autosectionlabel.source/rdkit.Chem.MolKey] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.MolKey.rst:13: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.MolDb.rst [autosectionlabel.source/rdkit.Chem.MolKey] WARNING: autodoc: failed to import module 'Chem.MolKey.InchiInfo' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.MolKey.MolKey' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.MolStandardize.rst:6: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.MolKey.rst [autosectionlabel.source/rdkit.Chem.MolStandardize] WARNING: autodoc: failed to import module 'Chem.MolStandardize.rdMolStandardize' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.MolSurf' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.PandasTools' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.PeriodicTable' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Pharm2D' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Pharm2D.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.MolStandardize.rst [autosectionlabel.source/rdkit.Chem.Pharm2D] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Pharm2D.rst:16: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.MolKey.rst [autosectionlabel.source/rdkit.Chem.Pharm2D] WARNING: autodoc: failed to import module 'Chem.Pharm2D.Generate' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Pharm2D.Gobbi_Pharm2D' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Pharm2D.Matcher' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Pharm2D.SigFactory' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Pharm2D.Utils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Pharm3D' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Pharm3D.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Pharm2D.rst [autosectionlabel.source/rdkit.Chem.Pharm3D] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Pharm3D.rst:14: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Pharm2D.rst [autosectionlabel.source/rdkit.Chem.Pharm3D] WARNING: autodoc: failed to import module 'Chem.Pharm3D.EmbedLib' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Pharm3D.ExcludedVolume' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Pharm3D.Pharmacophore' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.PropertyMol' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.PyMol' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.QED' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Randomize' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Recap' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.ReducedGraphs' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.RegistrationHash' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.SATIS' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.SaltRemover' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Scaffolds' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Scaffolds.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Pharm3D.rst [autosectionlabel.source/rdkit.Chem.Scaffolds] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Scaffolds.rst:13: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Pharm3D.rst [autosectionlabel.source/rdkit.Chem.Scaffolds] WARNING: autodoc: failed to import module 'Chem.Scaffolds.MurckoScaffold' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Scaffolds.rdScaffoldNetwork' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.ShowMols' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.SimpleEnum' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.SimpleEnum.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Scaffolds.rst [autosectionlabel.source/rdkit.Chem.SimpleEnum] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.SimpleEnum.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Scaffolds.rst [autosectionlabel.source/rdkit.Chem.SimpleEnum] WARNING: autodoc: failed to import module 'Chem.SimpleEnum.Enumerator' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.SpacialScore' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Subshape' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Subshape.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.SimpleEnum.rst [autosectionlabel.source/rdkit.Chem.Subshape] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Subshape.rst:15: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.SimpleEnum.rst [autosectionlabel.source/rdkit.Chem.Subshape] WARNING: autodoc: failed to import module 'Chem.Subshape.BuilderUtils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeAligner' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeBuilder' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeObjects' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Suppliers' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Suppliers.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Subshape.rst [autosectionlabel.source/rdkit.Chem.Suppliers] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Suppliers.rst:13: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Subshape.rst [autosectionlabel.source/rdkit.Chem.Suppliers] WARNING: autodoc: failed to import module 'Chem.Suppliers.DbMolSupplier' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.Suppliers.MolSupplier' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.TemplateAlign' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.TorsionFingerprints' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.fmcs' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.fmcs.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Suppliers.rst [autosectionlabel.source/rdkit.Chem.fmcs] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.fmcs.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.Suppliers.rst [autosectionlabel.source/rdkit.Chem.fmcs] WARNING: autodoc: failed to import module 'Chem.fmcs.fmcs' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.inchi' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdAbbreviations' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdCIPLabeler' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdChemReactions' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdChemicalFeatures' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdCoordGen' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdDepictor' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdDeprotect' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdDetermineBonds' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdDistGeom' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdEHTTools' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdEnumerateStereoisomers' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdFMCS' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdFingerprintGenerator' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdForceFieldHelpers' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdFreeSASA' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdGeneralizedSubstruct' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMHFPFingerprint' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMIF' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMMPA' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMolAlign' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMolCatalog' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMolChemicalFeatures' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMolDescriptors' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMolEnumerator' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMolHash' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMolInterchange' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMolProcessing' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdMolTransforms' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdPartialCharges' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdRGroupDecomposition' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdRascalMCES' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdReducedGraphs' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdSLNParse' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdShapeAlign' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdShapeHelpers' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdSubstructLibrary' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdSynthonSpaceSearch' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdTautomerQuery' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdchem' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdfiltercatalog' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdfragcatalog' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdinchi' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdmolfiles' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdmolops' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdqueries' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Chem.rdtrajectory' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'DataManip' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataManip.rst:5: WARNING: duplicate label subpackages, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.rst [autosectionlabel.source/rdkit.DataManip] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataManip.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.fmcs.rst [autosectionlabel.source/rdkit.DataManip] WARNING: autodoc: failed to import module 'DataManip.Metric' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataManip.Metric.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Chem.fmcs.rst [autosectionlabel.source/rdkit.DataManip.Metric] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataManip.Metric.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataManip.rst [autosectionlabel.source/rdkit.DataManip.Metric] WARNING: autodoc: failed to import module 'DataManip.Metric.rdMetricMatrixCalc' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'DataStructs' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataStructs.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataManip.Metric.rst [autosectionlabel.source/rdkit.DataStructs] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataStructs.rst:18: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataManip.Metric.rst [autosectionlabel.source/rdkit.DataStructs] WARNING: autodoc: failed to import module 'DataStructs.BitEnsemble' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'DataStructs.BitEnsembleDb' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'DataStructs.BitUtils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'DataStructs.LazySignature' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'DataStructs.TopNContainer' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'DataStructs.VectCollection' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'DataStructs.cDataStructs' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Dbase' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Dbase.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataStructs.rst [autosectionlabel.source/rdkit.Dbase] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Dbase.rst:17: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataStructs.rst [autosectionlabel.source/rdkit.Dbase] WARNING: autodoc: failed to import module 'Dbase.DbConnection' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Dbase.DbInfo' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Dbase.DbModule' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Dbase.DbResultSet' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Dbase.DbUtils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Dbase.StorageUtils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'DistanceGeometry' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DistanceGeometry.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Dbase.rst [autosectionlabel.source/rdkit.DistanceGeometry] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DistanceGeometry.rst:13: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Dbase.rst [autosectionlabel.source/rdkit.DistanceGeometry] WARNING: autodoc: failed to import module 'DistanceGeometry.DistGeom' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ForceField.rst:5: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] WARNING: autodoc: failed to import module 'ForceField' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ForceField.rst:13: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DistanceGeometry.rst [autosectionlabel.source/rdkit.ForceField] WARNING: autodoc: failed to import module 'ForceField.rdForceField' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Geometry' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Geometry.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DistanceGeometry.rst [autosectionlabel.source/rdkit.Geometry] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Geometry.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ForceField.rst [autosectionlabel.source/rdkit.Geometry] WARNING: autodoc: failed to import module 'Geometry.rdGeometry' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.rst:5: WARNING: duplicate label subpackages, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.DataManip.rst [autosectionlabel.source/rdkit.ML] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.rst:18: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Geometry.rst [autosectionlabel.source/rdkit.ML] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.rst:26: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Geometry.rst [autosectionlabel.source/rdkit.ML] WARNING: autodoc: failed to import module 'ML.Cluster' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Cluster.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.rst [autosectionlabel.source/rdkit.ML.Cluster] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Cluster.rst:19: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.rst [autosectionlabel.source/rdkit.ML.Cluster] WARNING: autodoc: failed to import module 'ML.Cluster.Butina' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Cluster.ClusterUtils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Cluster.ClusterVis' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Cluster.Clustering' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Cluster.Clusters' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Cluster.Murtagh' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Cluster.Resemblance' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Cluster.Standardize' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Data' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Data.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Cluster.rst [autosectionlabel.source/rdkit.ML.Data] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Data.rst:19: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Cluster.rst [autosectionlabel.source/rdkit.ML.Data] WARNING: autodoc: failed to import module 'ML.Data.DataUtils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Data.FindQuantBounds' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Data.MLData' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Data.Quantize' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Data.SplitData' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Data.Stats' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Data.Transforms' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Data.cQuantize' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Descriptors' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Descriptors.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Data.rst [autosectionlabel.source/rdkit.ML.Descriptors] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Descriptors.rst:15: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Data.rst [autosectionlabel.source/rdkit.ML.Descriptors] WARNING: autodoc: failed to import module 'ML.Descriptors.CompoundDescriptors' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Descriptors.Descriptors' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Descriptors.MoleculeDescriptors' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Descriptors.Parser' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.InfoTheory' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.InfoTheory.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Descriptors.rst [autosectionlabel.source/rdkit.ML.InfoTheory] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.InfoTheory.rst:15: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Descriptors.rst [autosectionlabel.source/rdkit.ML.InfoTheory] WARNING: autodoc: failed to import module 'ML.InfoTheory.BitClusterer' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.InfoTheory.BitRank' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.InfoTheory.entropy' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.InfoTheory.rdInfoTheory' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.MLUtils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.MLUtils.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.InfoTheory.rst [autosectionlabel.source/rdkit.ML.MLUtils] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.MLUtils.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.InfoTheory.rst [autosectionlabel.source/rdkit.ML.MLUtils] WARNING: autodoc: failed to import module 'ML.MLUtils.VoteImg' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.MatOps' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.SLT' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.SLT.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.MLUtils.rst [autosectionlabel.source/rdkit.ML.SLT] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.SLT.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.MLUtils.rst [autosectionlabel.source/rdkit.ML.SLT] WARNING: autodoc: failed to import module 'ML.SLT.Risk' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.Scoring' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Scoring.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.SLT.rst [autosectionlabel.source/rdkit.ML.Scoring] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Scoring.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.SLT.rst [autosectionlabel.source/rdkit.ML.Scoring] WARNING: autodoc: failed to import module 'ML.Scoring.Scoring' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'ML.files' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'Numerics' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Numerics.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Scoring.rst [autosectionlabel.source/rdkit.Numerics] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Numerics.rst:12: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.Scoring.rst [autosectionlabel.source/rdkit.Numerics] WARNING: autodoc: failed to import module 'Numerics.rdAlignment' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'RDConfig' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'RDLogger' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'RDPaths' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'RDRandom' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'SimDivFilters' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.SimDivFilters.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Numerics.rst [autosectionlabel.source/rdkit.SimDivFilters] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.SimDivFilters.rst:13: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.Numerics.rst [autosectionlabel.source/rdkit.SimDivFilters] WARNING: autodoc: failed to import module 'SimDivFilters.SimilarityPickers' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'SimDivFilters.rdSimDivPickers' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'TestRunner' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.VLib.rst:5: WARNING: duplicate label subpackages, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.ML.rst [autosectionlabel.source/rdkit.VLib] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.VLib.rst:12: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.SimDivFilters.rst [autosectionlabel.source/rdkit.VLib] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.VLib.rst:23: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.SimDivFilters.rst [autosectionlabel.source/rdkit.VLib] WARNING: autodoc: failed to import module 'VLib.Filter' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.Node' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.NodeLib' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.VLib.NodeLib.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.VLib.rst [autosectionlabel.source/rdkit.VLib.NodeLib] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.VLib.NodeLib.rst:19: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.VLib.rst [autosectionlabel.source/rdkit.VLib.NodeLib] WARNING: autodoc: failed to import module 'VLib.NodeLib.DbMolSupply' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.NodeLib.DbPickleSupplier' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.NodeLib.SDSupply' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsMolFilter' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsRemover' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesDupeFilter' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesOutput' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesSupply' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.Output' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.Supply' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'VLib.Transform' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'rdBase' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'utils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.utils.rst:5: WARNING: duplicate label submodules, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.VLib.NodeLib.rst [autosectionlabel.source/rdkit.utils] /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.utils.rst:16: WARNING: duplicate label module contents, other instance in /build/reproducible-path/rdkit-202503.6/Docs/Book/source/rdkit.VLib.NodeLib.rst [autosectionlabel.source/rdkit.utils] WARNING: autodoc: failed to import module 'utils.cactvs' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'utils.chemutils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'utils.fileutils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'utils.listutils' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'utils.spiral' from module 'rdkit'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n raise ModuleNotFoundError(msg, name=modname) # NoQA: TRY301\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'rdkit'\n"] [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/rdkit-202503.6/Docs/Book/data/README.md: WARNING: document isn't included in any toctree [toc.not_included] done preparing documents... done copying assets... copying downloadable files... [ 5%] C++Examples/example1.cpp copying downloadable files... [ 11%] C++Examples/example2.cpp copying downloadable files... [ 16%] C++Examples/example3.cpp copying downloadable files... [ 21%] C++Examples/example4.cpp copying downloadable files... [ 26%] C++Examples/example5.cpp copying downloadable files... [ 32%] C++Examples/example6.cpp copying downloadable files... [ 37%] C++Examples/example7.cpp copying downloadable files... [ 42%] C++Examples/example8.cpp copying downloadable files... [ 47%] C++Examples/example9.cpp copying downloadable files... [ 53%] ../../Code/GraphMol/Bond.h copying downloadable files... [ 58%] C++Examples/example10.cpp copying downloadable files... [ 63%] C++Examples/CMakeLists.txt copying downloadable files... [ 68%] C++Examples/example11.cpp copying downloadable files... [ 74%] C++Examples/example12.cpp copying downloadable files... [ 79%] C++Examples/example13.cpp copying downloadable files... [ 84%] C++Examples/example17.cpp copying downloadable files... [ 89%] C++Examples/example14.cpp copying downloadable files... [ 95%] C++Examples/example15.cpp copying downloadable files... [100%] C++Examples/example16.cpp copying static files... Writing evaluated template result to /build/reproducible-path/rdkit-202503.6/Docs/Book/_build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/rdkit-202503.6/Docs/Book/_build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/rdkit-202503.6/Docs/Book/_build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/rdkit-202503.6/Docs/Book/_build/html/_static/sphinxdoc.css copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 0%] BackwardsIncompatibleChanges writing output... [ 1%] Cartridge writing output... [ 1%] Cookbook writing output... [ 1%] GettingStartedInC++ writing output... [ 2%] GettingStartedInPython writing output... [ 2%] GettingStartedWithContributing writing output... [ 3%] Install writing output... [ 3%] Overview writing output... [ 3%] RDKit_Book writing output... [ 4%] api-docs writing output... [ 4%] data/README writing output... [ 4%] index writing output... [ 5%] source/rdkit writing output... [ 5%] source/rdkit.Avalon writing output... [ 6%] source/rdkit.Avalon.pyAvalonTools writing output... [ 6%] source/rdkit.Chem writing output... [ 6%] source/rdkit.Chem.AllChem writing output... [ 7%] source/rdkit.Chem.AtomPairs writing output... [ 7%] source/rdkit.Chem.AtomPairs.Pairs writing output... [ 7%] source/rdkit.Chem.AtomPairs.Sheridan writing output... [ 8%] source/rdkit.Chem.AtomPairs.Torsions writing output... [ 8%] source/rdkit.Chem.AtomPairs.Utils writing output... [ 9%] source/rdkit.Chem.BRICS writing output... [ 9%] source/rdkit.Chem.BuildFragmentCatalog writing output... [ 9%] source/rdkit.Chem.ChemUtils writing output... [ 10%] source/rdkit.Chem.ChemUtils.AlignDepict writing output... [ 10%] source/rdkit.Chem.ChemUtils.BulkTester writing output... [ 10%] source/rdkit.Chem.ChemUtils.DescriptorUtilities writing output... [ 11%] source/rdkit.Chem.ChemUtils.SDFToCSV writing output... [ 11%] source/rdkit.Chem.ChemUtils.TemplateExpand writing output... [ 12%] source/rdkit.Chem.ChemicalFeatures writing output... [ 12%] source/rdkit.Chem.ChemicalForceFields writing output... [ 12%] source/rdkit.Chem.Crippen writing output... [ 13%] source/rdkit.Chem.Descriptors writing output... [ 13%] source/rdkit.Chem.Descriptors3D writing output... [ 13%] source/rdkit.Chem.Draw writing output... [ 14%] source/rdkit.Chem.Draw.IPythonConsole writing output... [ 14%] source/rdkit.Chem.Draw.MolDrawing writing output... [ 15%] source/rdkit.Chem.Draw.SimilarityMaps writing output... [ 15%] source/rdkit.Chem.Draw.rdMolDraw2D writing output... [ 15%] source/rdkit.Chem.Draw.rdMolDraw2DQt writing output... [ 16%] source/rdkit.Chem.EState writing output... [ 16%] source/rdkit.Chem.EState.AtomTypes writing output... [ 16%] source/rdkit.Chem.EState.EState writing output... [ 17%] source/rdkit.Chem.EState.EState_VSA writing output... [ 17%] source/rdkit.Chem.EState.Fingerprinter writing output... [ 18%] source/rdkit.Chem.EnumerateHeterocycles writing output... [ 18%] source/rdkit.Chem.EnumerateStereoisomers writing output... [ 18%] source/rdkit.Chem.FastSDMolSupplier writing output... [ 19%] source/rdkit.Chem.FeatFinderCLI writing output... [ 19%] source/rdkit.Chem.FeatMaps writing output... [ 19%] source/rdkit.Chem.FeatMaps.FeatMapParser writing output... [ 20%] source/rdkit.Chem.FeatMaps.FeatMapPoint writing output... [ 20%] source/rdkit.Chem.FeatMaps.FeatMapUtils writing output... [ 21%] source/rdkit.Chem.FeatMaps.FeatMaps writing output... [ 21%] source/rdkit.Chem.Features writing output... [ 21%] source/rdkit.Chem.Features.FeatDirUtilsRD writing output... [ 22%] source/rdkit.Chem.Features.ShowFeats writing output... [ 22%] source/rdkit.Chem.FilterCatalog writing output... [ 22%] source/rdkit.Chem.Fingerprints writing output... [ 23%] source/rdkit.Chem.Fingerprints.ClusterMols writing output... [ 23%] source/rdkit.Chem.Fingerprints.DbFpSupplier writing output... [ 24%] source/rdkit.Chem.Fingerprints.FingerprintMols writing output... [ 24%] source/rdkit.Chem.Fingerprints.MolSimilarity writing output... [ 24%] source/rdkit.Chem.Fingerprints.SimilarityScreener writing output... [ 25%] source/rdkit.Chem.Fraggle writing output... [ 25%] source/rdkit.Chem.Fraggle.FraggleSim writing output... [ 25%] source/rdkit.Chem.FragmentCatalog writing output... [ 26%] source/rdkit.Chem.FragmentMatcher writing output... [ 26%] source/rdkit.Chem.Fragments writing output... [ 27%] source/rdkit.Chem.FunctionalGroups writing output... [ 27%] source/rdkit.Chem.GraphDescriptors writing output... [ 27%] source/rdkit.Chem.Graphs writing output... [ 28%] source/rdkit.Chem.Lipinski writing output... [ 28%] source/rdkit.Chem.MACCSkeys writing output... [ 28%] source/rdkit.Chem.MolCatalog writing output... [ 29%] source/rdkit.Chem.MolDb writing output... [ 29%] source/rdkit.Chem.MolDb.FingerprintUtils writing output... [ 30%] source/rdkit.Chem.MolDb.Loader writing output... [ 30%] source/rdkit.Chem.MolDb.Loader_orig writing output... [ 30%] source/rdkit.Chem.MolDb.Loader_sa writing output... [ 31%] source/rdkit.Chem.MolKey writing output... [ 31%] source/rdkit.Chem.MolKey.InchiInfo writing output... [ 31%] source/rdkit.Chem.MolKey.MolKey writing output... [ 32%] source/rdkit.Chem.MolStandardize writing output... [ 32%] source/rdkit.Chem.MolStandardize.rdMolStandardize writing output... [ 33%] source/rdkit.Chem.MolSurf writing output... [ 33%] source/rdkit.Chem.PandasTools writing output... [ 33%] source/rdkit.Chem.PeriodicTable writing output... [ 34%] source/rdkit.Chem.Pharm2D writing output... [ 34%] source/rdkit.Chem.Pharm2D.Generate writing output... [ 34%] source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D writing output... [ 35%] source/rdkit.Chem.Pharm2D.Matcher writing output... [ 35%] source/rdkit.Chem.Pharm2D.SigFactory writing output... [ 36%] source/rdkit.Chem.Pharm2D.Utils writing output... [ 36%] source/rdkit.Chem.Pharm3D writing output... [ 36%] source/rdkit.Chem.Pharm3D.EmbedLib writing output... [ 37%] source/rdkit.Chem.Pharm3D.ExcludedVolume writing output... [ 37%] source/rdkit.Chem.Pharm3D.Pharmacophore writing output... [ 37%] source/rdkit.Chem.PropertyMol writing output... [ 38%] source/rdkit.Chem.PyMol writing output... [ 38%] source/rdkit.Chem.QED writing output... [ 39%] source/rdkit.Chem.Randomize writing output... [ 39%] source/rdkit.Chem.Recap writing output... [ 39%] source/rdkit.Chem.ReducedGraphs writing output... [ 40%] source/rdkit.Chem.RegistrationHash writing output... [ 40%] source/rdkit.Chem.SATIS writing output... [ 40%] source/rdkit.Chem.SaltRemover writing output... [ 41%] source/rdkit.Chem.Scaffolds writing output... [ 41%] source/rdkit.Chem.Scaffolds.MurckoScaffold writing output... [ 42%] source/rdkit.Chem.Scaffolds.rdScaffoldNetwork writing output... [ 42%] source/rdkit.Chem.ShowMols writing output... [ 42%] source/rdkit.Chem.SimpleEnum writing output... [ 43%] source/rdkit.Chem.SimpleEnum.Enumerator writing output... [ 43%] source/rdkit.Chem.SpacialScore writing output... [ 43%] source/rdkit.Chem.Subshape writing output... [ 44%] source/rdkit.Chem.Subshape.BuilderUtils writing output... [ 44%] source/rdkit.Chem.Subshape.SubshapeAligner writing output... [ 45%] source/rdkit.Chem.Subshape.SubshapeBuilder writing output... [ 45%] source/rdkit.Chem.Subshape.SubshapeObjects writing output... [ 45%] source/rdkit.Chem.Suppliers writing output... [ 46%] source/rdkit.Chem.Suppliers.DbMolSupplier writing output... [ 46%] source/rdkit.Chem.Suppliers.MolSupplier writing output... [ 46%] source/rdkit.Chem.TemplateAlign writing output... [ 47%] source/rdkit.Chem.TorsionFingerprints writing output... [ 47%] source/rdkit.Chem.fmcs writing output... [ 48%] source/rdkit.Chem.fmcs.fmcs writing output... [ 48%] source/rdkit.Chem.inchi writing output... [ 48%] source/rdkit.Chem.rdAbbreviations writing output... [ 49%] source/rdkit.Chem.rdCIPLabeler writing output... [ 49%] source/rdkit.Chem.rdChemReactions writing output... [ 49%] source/rdkit.Chem.rdChemicalFeatures writing output... [ 50%] source/rdkit.Chem.rdCoordGen writing output... [ 50%] source/rdkit.Chem.rdDepictor writing output... [ 51%] source/rdkit.Chem.rdDeprotect writing output... [ 51%] source/rdkit.Chem.rdDetermineBonds writing output... [ 51%] source/rdkit.Chem.rdDistGeom writing output... [ 52%] source/rdkit.Chem.rdEHTTools writing output... [ 52%] source/rdkit.Chem.rdEnumerateStereoisomers writing output... [ 52%] source/rdkit.Chem.rdFMCS writing output... [ 53%] source/rdkit.Chem.rdFingerprintGenerator writing output... [ 53%] source/rdkit.Chem.rdForceFieldHelpers writing output... [ 54%] source/rdkit.Chem.rdFreeSASA writing output... [ 54%] source/rdkit.Chem.rdGeneralizedSubstruct writing output... [ 54%] source/rdkit.Chem.rdMHFPFingerprint writing output... [ 55%] source/rdkit.Chem.rdMIF writing output... [ 55%] source/rdkit.Chem.rdMMPA writing output... [ 55%] source/rdkit.Chem.rdMolAlign writing output... [ 56%] source/rdkit.Chem.rdMolCatalog writing output... [ 56%] source/rdkit.Chem.rdMolChemicalFeatures writing output... [ 57%] source/rdkit.Chem.rdMolDescriptors writing output... [ 57%] source/rdkit.Chem.rdMolEnumerator writing output... [ 57%] source/rdkit.Chem.rdMolHash writing output... [ 58%] source/rdkit.Chem.rdMolInterchange writing output... [ 58%] source/rdkit.Chem.rdMolProcessing writing output... [ 58%] source/rdkit.Chem.rdMolTransforms writing output... [ 59%] source/rdkit.Chem.rdPartialCharges writing output... [ 59%] source/rdkit.Chem.rdRGroupDecomposition writing output... [ 60%] source/rdkit.Chem.rdRascalMCES writing output... [ 60%] source/rdkit.Chem.rdReducedGraphs writing output... [ 60%] source/rdkit.Chem.rdSLNParse writing output... [ 61%] source/rdkit.Chem.rdShapeAlign writing output... [ 61%] source/rdkit.Chem.rdShapeHelpers writing output... [ 61%] source/rdkit.Chem.rdSubstructLibrary writing output... [ 62%] source/rdkit.Chem.rdSynthonSpaceSearch writing output... [ 62%] source/rdkit.Chem.rdTautomerQuery writing output... [ 63%] source/rdkit.Chem.rdchem writing output... [ 63%] source/rdkit.Chem.rdfiltercatalog writing output... [ 63%] source/rdkit.Chem.rdfragcatalog writing output... [ 64%] source/rdkit.Chem.rdinchi writing output... [ 64%] source/rdkit.Chem.rdmolfiles writing output... [ 64%] source/rdkit.Chem.rdmolops writing output... [ 65%] source/rdkit.Chem.rdqueries writing output... [ 65%] source/rdkit.Chem.rdtrajectory writing output... [ 66%] source/rdkit.DataManip writing output... [ 66%] source/rdkit.DataManip.Metric writing output... [ 66%] source/rdkit.DataManip.Metric.rdMetricMatrixCalc writing output... [ 67%] source/rdkit.DataStructs writing output... [ 67%] source/rdkit.DataStructs.BitEnsemble writing output... [ 67%] source/rdkit.DataStructs.BitEnsembleDb writing output... [ 68%] source/rdkit.DataStructs.BitUtils writing output... [ 68%] source/rdkit.DataStructs.LazySignature writing output... [ 69%] source/rdkit.DataStructs.TopNContainer writing output... [ 69%] source/rdkit.DataStructs.VectCollection writing output... [ 69%] source/rdkit.DataStructs.cDataStructs writing output... [ 70%] source/rdkit.Dbase writing output... [ 70%] source/rdkit.Dbase.DbConnection writing output... [ 70%] source/rdkit.Dbase.DbInfo writing output... [ 71%] source/rdkit.Dbase.DbModule writing output... [ 71%] source/rdkit.Dbase.DbResultSet writing output... [ 72%] source/rdkit.Dbase.DbUtils writing output... [ 72%] source/rdkit.Dbase.StorageUtils writing output... [ 72%] source/rdkit.DistanceGeometry writing output... [ 73%] source/rdkit.DistanceGeometry.DistGeom writing output... [ 73%] source/rdkit.ForceField writing output... [ 73%] source/rdkit.ForceField.rdForceField writing output... [ 74%] source/rdkit.Geometry writing output... [ 74%] source/rdkit.Geometry.rdGeometry writing output... [ 75%] source/rdkit.ML writing output... [ 75%] source/rdkit.ML.Cluster writing output... [ 75%] source/rdkit.ML.Cluster.Butina writing output... [ 76%] source/rdkit.ML.Cluster.ClusterUtils writing output... [ 76%] source/rdkit.ML.Cluster.ClusterVis writing output... [ 76%] source/rdkit.ML.Cluster.Clustering writing output... [ 77%] source/rdkit.ML.Cluster.Clusters writing output... [ 77%] source/rdkit.ML.Cluster.Murtagh writing output... [ 78%] source/rdkit.ML.Cluster.Resemblance writing output... [ 78%] source/rdkit.ML.Cluster.Standardize writing output... [ 78%] source/rdkit.ML.Data writing output... [ 79%] source/rdkit.ML.Data.DataUtils writing output... [ 79%] source/rdkit.ML.Data.FindQuantBounds writing output... [ 79%] source/rdkit.ML.Data.MLData writing output... [ 80%] source/rdkit.ML.Data.Quantize writing output... [ 80%] source/rdkit.ML.Data.SplitData writing output... [ 81%] source/rdkit.ML.Data.Stats writing output... [ 81%] source/rdkit.ML.Data.Transforms writing output... [ 81%] source/rdkit.ML.Data.cQuantize writing output... [ 82%] source/rdkit.ML.Descriptors writing output... [ 82%] source/rdkit.ML.Descriptors.CompoundDescriptors writing output... [ 82%] source/rdkit.ML.Descriptors.Descriptors writing output... [ 83%] source/rdkit.ML.Descriptors.MoleculeDescriptors writing output... [ 83%] source/rdkit.ML.Descriptors.Parser writing output... [ 84%] source/rdkit.ML.InfoTheory writing output... [ 84%] source/rdkit.ML.InfoTheory.BitClusterer writing output... [ 84%] source/rdkit.ML.InfoTheory.BitRank writing output... [ 85%] source/rdkit.ML.InfoTheory.entropy writing output... [ 85%] source/rdkit.ML.InfoTheory.rdInfoTheory writing output... [ 85%] source/rdkit.ML.MLUtils writing output... [ 86%] source/rdkit.ML.MLUtils.VoteImg writing output... [ 86%] source/rdkit.ML.MatOps writing output... [ 87%] source/rdkit.ML.SLT writing output... [ 87%] source/rdkit.ML.SLT.Risk writing output... [ 87%] source/rdkit.ML.Scoring writing output... [ 88%] source/rdkit.ML.Scoring.Scoring writing output... [ 88%] source/rdkit.ML.files writing output... [ 88%] source/rdkit.Numerics writing output... [ 89%] source/rdkit.Numerics.rdAlignment writing output... [ 89%] source/rdkit.RDConfig writing output... [ 90%] source/rdkit.RDLogger writing output... [ 90%] source/rdkit.RDPaths writing output... [ 90%] source/rdkit.RDRandom writing output... [ 91%] source/rdkit.SimDivFilters writing output... [ 91%] source/rdkit.SimDivFilters.SimilarityPickers writing output... [ 91%] source/rdkit.SimDivFilters.rdSimDivPickers writing output... [ 92%] source/rdkit.TestRunner writing output... [ 92%] source/rdkit.VLib writing output... [ 93%] source/rdkit.VLib.Filter writing output... [ 93%] source/rdkit.VLib.Node writing output... [ 93%] source/rdkit.VLib.NodeLib writing output... [ 94%] source/rdkit.VLib.NodeLib.DbMolSupply writing output... [ 94%] source/rdkit.VLib.NodeLib.DbPickleSupplier writing output... [ 94%] source/rdkit.VLib.NodeLib.SDSupply writing output... [ 95%] source/rdkit.VLib.NodeLib.SmartsMolFilter writing output... [ 95%] source/rdkit.VLib.NodeLib.SmartsRemover writing output... [ 96%] source/rdkit.VLib.NodeLib.SmilesDupeFilter writing output... [ 96%] source/rdkit.VLib.NodeLib.SmilesOutput writing output... [ 96%] source/rdkit.VLib.NodeLib.SmilesSupply writing output... [ 97%] source/rdkit.VLib.Output writing output... [ 97%] source/rdkit.VLib.Supply writing output... [ 97%] source/rdkit.VLib.Transform writing output... [ 98%] source/rdkit.rdBase writing output... [ 98%] source/rdkit.utils writing output... [ 99%] source/rdkit.utils.cactvs writing output... [ 99%] source/rdkit.utils.chemutils writing output... [ 99%] source/rdkit.utils.fileutils writing output... [100%] source/rdkit.utils.listutils writing output... [100%] source/rdkit.utils.spiral /build/reproducible-path/rdkit-202503.6/Docs/Book/GettingStartedWithContributing.md:273: WARNING: 'myst' cross-reference target not found: 'building-rdkit-for-development' [myst.xref_missing] generating indices... genindex done writing additional pages... search done copying images... [ 1%] images/RDKitCB_0_im0.png copying images... [ 1%] images/RDKitCB_0_im1.png copying images... [ 2%] images/RDKitCB_0_im2.png copying images... [ 3%] images/RDKitCB_40_im0.png copying images... [ 3%] images/RDKitCB_40_im1.png copying images... [ 4%] images/RDKitCB_23_im0.png copying images... [ 5%] images/RDKitCB_23_im1.png copying images... [ 5%] images/RDKitCB_32_im0.png copying images... [ 6%] images/RDKitCB_32_im1.png copying images... [ 6%] images/RDKitCB_1_im0.png copying images... [ 7%] images/RDKitCB_1_im1.png copying images... [ 8%] images/RDKitCB_1_im2.png copying images... [ 8%] images/RDKitCB_1_im3.png copying images... [ 9%] images/RDKitCB_2_im0.png copying images... [ 10%] images/RDKitCB_2_im1.png copying images... [ 10%] images/RDKitCB_36_im0.png copying images... [ 11%] images/RDKitCB_36_im1.png copying images... [ 12%] images/RDKitCB_38_im0.png copying images... [ 12%] images/RDKitCB_39_im0.png copying images... [ 13%] images/RDKitCB_17_im0.png copying images... [ 14%] images/RDKitCB_17_im1.png copying images... [ 14%] images/RDKitCB_34_im0.png copying images... [ 15%] images/RDKitCB_34_im1.png copying images... [ 16%] images/RDKitCB_34_im2.png copying images... [ 16%] images/RDKitCB_37_im0.png copying images... [ 17%] images/RDKitCB_37_im1.png copying images... [ 18%] images/RDKitCB_37_im2.svg copying images... [ 18%] images/RDKitCB_35_im0.png copying images... [ 19%] images/RDKitCB_3_im0.png copying images... [ 19%] images/RDKitCB_8_im0.png copying images... [ 20%] images/RDKitCB_30_im0.png copying images... [ 21%] images/RDKitCB_30_im1.png copying images... [ 21%] images/RDKitCB_7_im0.png copying images... [ 22%] images/RDKitCB_7_im1.png copying images... [ 23%] images/RDKitCB_7_im2.png copying images... [ 23%] images/RDKitCB_7_im3.png copying images... [ 24%] images/RDKitCB_7_im4.png copying images... [ 25%] images/RDKitCB_7_im5.png copying images... [ 25%] images/RDKitCB_7_im6.png copying images... [ 26%] images/RDKitCB_29_im0.png copying images... [ 27%] images/RDKitCB_33_im0.png copying images... [ 27%] images/RDKitCB_33_im1.png copying images... [ 28%] images/RDKitCB_33_im2.png copying images... [ 29%] images/RDKitCB_13_im0.png copying images... [ 29%] images/RDKitCB_13_im1.png copying images... [ 30%] images/RDKitCB_20_im0.png copying images... [ 31%] images/RDKitCB_21_im0.png copying images... [ 31%] images/RDKitCB_21_im1.png copying images... [ 32%] images/RDKitCB_21_im2.png copying images... [ 32%] images/RDKitCB_21_im3.png copying images... [ 33%] images/RDKitCB_21_im4.png copying images... [ 34%] images/RDKitCB_21_im5.png copying images... [ 34%] images/RDKitCB_22_im0.png copying images... [ 35%] images/RDKitCB_22_im1.png copying images... [ 36%] images/RDKitCB_6_im0.png copying images... [ 36%] images/RDKitCB_6_im1.png copying images... [ 37%] images/RDKitCB_6_im2.png copying images... [ 38%] images/RDKitCB_15_im0.png copying images... [ 38%] images/RDKitCB_15_im1.png copying images... [ 39%] images/RDKitCB_19_im0.png copying images... [ 40%] images/RDKitCB_28_im0.png copying images... [ 40%] images/RDKitCB_28_im1.png copying images... [ 41%] images/picture_5.png copying images... [ 42%] images/Cc1ccccc1.png copying images... [ 42%] images/picture_1.png copying images... [ 43%] images/picture_0.png copying images... [ 44%] images/picture_3.png copying images... [ 44%] images/picture_2.png copying images... [ 45%] images/picture_4.png copying images... [ 45%] images/cdk2_mol1.png copying images... [ 46%] images/cdk2_mol2.png copying images... [ 47%] images/cdk2_molgrid.png copying images... [ 47%] images/cdk2_molgrid_aligned.png copying images... [ 48%] images/atom_highlights_1.png copying images... [ 49%] images/atom_highlights_2.png copying images... [ 49%] images/atom_highlights_3.png copying images... [ 50%] images/atom_annotation_1.png copying images... [ 51%] images/atom_labels_1.png copying images... [ 51%] images/atom_labels_2.png copying images... [ 52%] images/atom_labels_3.png copying images... [ 53%] images/mol_metadata1.png copying images... [ 53%] images/substruct_search_parameters1.png copying images... [ 54%] images/mcs_example_1.png copying images... [ 55%] images/mcs_example_2.png copying images... [ 55%] images/mcs_example_3.png copying images... [ 56%] images/mcs_example_4.png copying images... [ 56%] images/mcs_example_5.png copying images... [ 57%] images/mcs_example_6.png copying images... [ 58%] images/mfp2_bit872.svg copying images... [ 58%] images/rdk_bit1553.svg copying images... [ 59%] images/rdk_bit1553_2.svg copying images... [ 60%] images/similarity_map_fp1.png copying images... [ 60%] images/similarity_map_fp2.png copying images... [ 61%] images/similarity_map_fp3.png copying images... [ 62%] images/similarity_map_charges.png copying images... [ 62%] images/similarity_map_crippen.png copying images... [ 63%] images/reaction1.png copying images... [ 64%] images/reaction1_highlight.png copying images... [ 64%] images/picture_6.png copying images... [ 65%] images/picture_9.png copying images... [ 66%] images/picture_8.png copying images... [ 66%] images/picture_7.png copying images... [ 67%] images/picture_10.png copying images... [ 68%] images/picture_12.png copying images... [ 68%] images/picture_11.png copying images... [ 69%] images/parastereo_1.png copying images... [ 69%] images/parastereo_2.png copying images... [ 70%] images/potential_stereo_double_bond1.png copying images... [ 71%] images/potential_stereo_double_bond2.png copying images... [ 71%] images/potential_stereo_double_bond3.png copying images... [ 72%] images/nontetstereo_sp1.png copying images... [ 73%] images/nontetstereo_sp2.png copying images... [ 73%] images/nontetstereo_sp3.png copying images... [ 74%] images/nontetstereo_sp4.png copying images... [ 75%] images/nontetstereo_tb2.png copying images... [ 75%] images/nontetstereo_tb1.png copying images... [ 76%] images/nontetstereo_oh2.png copying images... [ 77%] images/nontetstereo_oh1.png copying images... [ 77%] images/nontetstereo_ex1.png copying images... [ 78%] images/nontetstereo_ex2.png copying images... [ 79%] images/nontetstereo_missing1.png copying images... [ 79%] images/picture_10.jpg copying images... [ 80%] images/ary_group.png copying images... [ 81%] ../Code/images/enhanced_stereo_and1_and2_base.png copying images... [ 81%] ../Code/images/enhanced_stereo_and1_and2_expand.png copying images... [ 82%] ../Code/images/enhanced_stereo_and1_cis_base.png copying images... [ 82%] ../Code/images/enhanced_stereo_and1_cis_expand.png copying images... [ 83%] ../Code/images/enhanced_stereo_and1_trans_base.png copying images... [ 84%] ../Code/images/enhanced_stereo_and1_trans_expand.png copying images... [ 84%] ../Code/images/enhanced_stereo_or1_or2_base.png copying images... [ 85%] ../Code/images/enhanced_stereo_or1_cis_base.png copying images... [ 86%] ../Code/images/enhanced_stereo_or1_trans_base.png copying images... [ 86%] ../Code/images/enhanced_stereo_abs_and_base.png copying images... [ 87%] ../Code/images/enhanced_stereo_abs_and_expand.png copying images... [ 88%] ../Code/images/enhanced_stereo_abs_or_base.png copying images... [ 88%] images/EnhancedStereoSSS_molA.png copying images... [ 89%] images/EnhancedStereoSSS_molB.png copying images... [ 90%] images/EnhancedStereoSSS_molC.png copying images... [ 90%] images/EnhancedStereoSSS_molD.png copying images... [ 91%] images/EnhancedStereoSSS_molE.png copying images... [ 92%] images/EnhancedStereoSSS_molF.png copying images... [ 92%] images/EnhancedStereoSSS_molG.png copying images... [ 93%] images/atrop_example1.png copying images... [ 94%] images/atrop_example2.png copying images... [ 94%] images/atrop_example3.png copying images... [ 95%] images/atrop_representation1.png copying images... [ 95%] images/atrop_example4.png copying images... [ 96%] images/atrop_example5.png copying images... [ 97%] images/atrop_representation2.png copying images... [ 97%] images/query_bonds.png copying images... [ 98%] images/query_bonds.2.png copying images... [ 99%] images/query_atoms.png copying images... [ 99%] images/PeptideConversion.png copying images... [100%] images/DnaDoubleStrand.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 391 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/build/reproducible-path/rdkit-202503.6/Docs/Book' # latexpdf build fails due to https://github.com/rdkit/rdkit/issues/8850 # (cd /build/reproducible-path/rdkit-202503.6/Docs/Book; RDBASE=/build/reproducible-path/rdkit-202503.6 /usr/bin/make latexpdf) make[1]: Leaving directory '/build/reproducible-path/rdkit-202503.6' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/rdkit-202503.6' cp -r rdkit obj-*/ find /build/reproducible-path/rdkit-202503.6 -name rdchem.so /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so PYTHONPATH=/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/:/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//rdkit/Chem/ LD_LIBRARY_PATH="/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib:" dh_auto_test cd obj-powerpc64le-linux-gnu && make -j8 test ARGS\+=--verbose ARGS\+=-j8 make[2]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' Running tests... /usr/bin/ctest --timeout=7200 --verbose -j8 UpdateCTestConfiguration from :/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: testCoordGen 1: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen/testCoordGen 1: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen 1: Test timeout computed to be: 7200 test 2 Start 2: pyCoordGen 2: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/External/CoordGen/Wrap/testCoordGen.py" 2: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/External/CoordGen/Wrap 2: Test timeout computed to be: 7200 test 3 Start 3: testDict 3: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/testDict 3: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral 3: Test timeout computed to be: 7200 test 4 Start 4: testRDValue 4: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/testRDValue 4: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral 4: Test timeout computed to be: 7200 test 5 Start 5: testConcurrentQueue 5: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/testConcurrentQueue 5: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral 5: Test timeout computed to be: 7200 test 6 Start 6: dictTestsCatch 6: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/dictTestsCatch 6: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral 6: Test timeout computed to be: 7200 test 7 Start 7: logTestsCatch 7: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral/logTestsCatch 7: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/RDGeneral 7: Test timeout computed to be: 7200 test 8 Start 8: testDataStructs 8: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/testDataStructs 8: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs 8: Test timeout computed to be: 7200 1: core 1: RDKit 2D 1: 1: 4 4 0 0 0 0 0 0 0 0999 V2000 1: 0.6824 0.1850 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.1850 -0.6824 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.6824 -0.1850 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.1850 0.6824 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 1 1 0 1: M END 1: 1: core+sidechain 1: RDKit 2D 1: 1: 7 7 0 0 0 0 0 0 0 0999 V2000 1: 0.6496 0.9080 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.3926 -0.0584 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4726 -0.5600 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.3396 -0.0616 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.2048 -0.5634 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.3590 -0.3156 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.6160 0.6508 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 2 6 1 0 1: 6 7 1 0 1: 7 1 1 0 1: M END 1: 1: templated 1: RDKit 2D 1: 1: 7 7 0 0 0 0 0 0 0 0999 V2000 1: 0.6824 0.1850 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.1850 -0.6824 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.6824 -0.1850 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.1850 0.6824 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 2 6 1 0 1: 6 7 1 0 1: 7 1 1 0 1: M END 1: 1: core 1: RDKit 2D 1: 1: 10 10 0 0 0 0 0 0 0 0999 V2000 1: -1.2956 -1.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.2984 -0.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4338 0.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4366 1.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4280 1.7512 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2956 1.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2984 0.2536 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4338 -0.2488 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4366 -1.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4280 -1.7512 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 5 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 9 10 1 0 1: 10 1 1 0 1: M END 1: 1: core+sidechain 1: RDKit 2D 1: 1: 12 12 0 0 0 0 0 0 0 0999 V2000 1: 0.2846 -0.7516 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.2790 -1.7516 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.5898 -2.2466 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.4530 -1.7418 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.4476 -0.7418 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.5788 -0.2468 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.5732 0.7532 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.2956 1.2484 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.3012 2.2482 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.1700 2.7434 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.1590 0.7434 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.1534 -0.2564 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 5 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 9 10 1 0 1: 8 11 1 0 1: 11 12 1 0 1: 12 1 1 0 1: M END 1: 1: templated 1: RDKit 2D 1: 1: 12 12 0 0 0 0 0 0 0 0999 V2000 1: -1.2984 -0.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4338 0.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4366 1.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4280 1.7512 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2956 1.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2984 0.2536 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4338 -0.2488 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4366 -1.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4280 -1.7512 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.2956 -1.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 5 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 9 10 1 0 1: 8 11 1 0 1: 11 12 1 0 1: 12 1 1 0 1: M END 1: 1: core 1: RDKit 2D 1: 1: 10 10 0 0 0 0 0 0 0 0999 V2000 1: -1.2956 -1.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.2984 -0.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4338 0.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4366 1.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4280 1.7512 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2956 1.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2984 0.2536 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4338 -0.2488 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4366 -1.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4280 -1.7512 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 5 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 9 10 1 0 1: 10 1 1 0 1: M END 1: 1: core+sidechain 1: RDKit 2D 1: 1: 16 16 0 0 0 0 0 0 0 0999 V2000 1: 1.7868 0.7799 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.6532 1.2791 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 3.5187 0.7785 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 3.5180 -0.2215 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.6515 -0.7209 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.7860 -0.2201 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.9195 -0.7195 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0539 -0.2189 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.8124 -0.7181 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.6780 -0.2175 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.5445 -0.7167 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.4101 -0.2161 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -4.2764 -0.7153 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -5.1421 -0.2147 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0547 0.7811 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.9211 1.2805 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 5 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 9 10 1 0 1: 10 11 1 0 1: 11 12 1 0 1: 12 13 1 0 1: 13 14 1 0 1: 8 15 1 0 1: 15 16 1 0 1: 16 1 1 0 1: M END 1: 1: templated 1: RDKit 2D 1: 1: 16 16 0 0 0 0 0 0 0 0999 V2000 1: -1.2984 -0.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4338 0.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4366 1.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4280 1.7512 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2956 1.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2984 0.2536 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4338 -0.2488 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.4366 -1.2488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4280 -1.7512 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.2956 -1.2536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 5 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 9 10 1 0 1: 10 11 1 0 1: 11 12 1 0 1: 12 13 1 0 1: 13 14 1 0 1: 8 15 1 0 1: 15 16 1 0 1: 16 1 1 0 1: M END 1: 3: Randomness seeded to: 2302478423 3: static boost any:0.000801 s 3: dynamic boost any:0.002357 s 3: static RDAny:0.000298 s 3: dynamic RDAny:0.002254 s 3: static RDValue:2e-06 s 3: dynamic RDValue:2e-06 s 3: [04:01:27] done: 0.000742 300000 3: [04:01:27] done: 0.000693 300000 3: [04:01:27] done: 0.00027 300000 3: [04:01:27] done: 0.005015 300000 3: [04:01:27] done: 0.00117 300000 3: =============================================================================== 3: All tests passed (223 assertions in 9 test cases) 3: 4: Randomness seeded to: 1072703120 4: min: -2147483648 -2147483648 4: min: 0 0 4: min: 2.22507e-308 2.22507e-308 4: min: 1.17549e-38 1.17549e-38 4: min: 0 0 4: =============================================================================== 4: All tests passed (76 assertions in 9 test cases) 4: 6: Randomness seeded to: 165194119 6: =============================================================================== 6: All tests passed (32 assertions in 2 test cases) 6: 1/246 Test #3: testDict ............................... Passed 0.04 sec 2/246 Test #4: testRDValue ............................ Passed 0.04 sec 3/246 Test #6: dictTestsCatch ......................... Passed 0.03 sec 1: core 1: RDKit 2D 1: 1: 9 10 0 0 0 0 0 0 0 0999 V2000 1: 0.6718 -0.9994 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.5374 -0.4988 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.5366 0.5012 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.6702 1.0006 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.1954 0.4998 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.1946 -0.5002 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.1454 -0.8098 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.7338 -0.0014 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.1466 0.8082 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 5 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 6 1 1 0 1: 9 5 1 0 1: M END 1: 1: core+sidechain 1: RDKit 2D 1: 1: 19 21 0 0 0 0 0 0 0 0999 V2000 1: -0.5657 -0.9286 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.4321 -0.4294 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.2977 -0.9300 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.2969 -1.9300 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.1625 -2.4306 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.4329 0.5708 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.5673 1.0714 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.5681 2.0714 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.2975 2.5720 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2975 2.5728 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.7969 3.4386 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.2991 0.5720 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.2999 -0.4278 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2513 -0.7362 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.5609 -1.6870 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.5393 -1.8942 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.8923 -2.4306 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.8381 0.0734 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2499 0.8820 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 2 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 9 10 1 0 1: 10 11 1 0 1: 7 12 1 0 1: 12 13 1 0 1: 13 14 1 0 1: 14 15 1 0 1: 15 16 1 0 1: 15 17 1 0 1: 14 18 1 0 1: 18 19 1 0 1: 13 1 1 0 1: 19 12 1 0 1: 11 9 1 0 1: M END 1: 1: templated 1: RDKit 2D 1: 1: 19 21 0 0 0 0 0 0 0 0999 V2000 1: 0.5360 -0.9365 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.4021 -0.4366 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.2680 -0.9366 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.2680 -1.9366 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.4020 -2.4366 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.4021 0.5634 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.5360 1.0633 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.5360 2.0634 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.3300 2.5633 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.3300 2.5633 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.8300 3.4295 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.3300 0.5634 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.3300 -0.4366 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.2812 -0.7457 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.5900 -1.6966 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.9208 -2.4398 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.5682 -1.9046 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.8686 0.0634 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.2812 0.8725 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 2 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 9 10 1 0 1: 10 11 1 0 1: 7 12 1 0 1: 12 13 1 0 1: 13 14 1 0 1: 14 15 1 0 1: 15 16 1 0 1: 15 17 1 0 1: 14 18 1 0 1: 18 19 1 0 1: 13 1 1 0 1: 19 12 1 0 1: 11 9 1 0 1: M END 1: 1: core 1: RDKit 2D 1: 1: 5 4 0 0 0 0 0 0 0 0999 V2000 1: 1.2134 -0.4976 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.3464 0.0006 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.3444 1.0006 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.5186 -0.5010 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.3856 -0.0028 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 2 4 1 0 1: 4 5 1 0 1: M END 1: 1: core+sidechain 1: RDKit 2D 1: 1: 7 6 0 0 0 0 0 0 0 0999 V2000 1: -1.7333 -0.5679 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.8661 -0.0697 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.8641 0.9303 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.0011 -0.5713 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.8659 -0.0731 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.8679 0.9269 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.7309 -0.5749 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 2 4 1 0 1: 4 5 1 0 1: 5 6 1 0 1: 5 7 1 0 1: M END 1: 1: templated 1: RDKit 2D 1: 1: 7 6 0 0 0 0 0 0 0 0999 V2000 1: 1.2227 -0.4921 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.3464 0.0006 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.3350 1.0058 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.5185 -0.5117 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.3902 -0.0216 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.2506 -0.5314 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.4014 0.9784 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 2 4 1 0 1: 4 5 1 0 1: 5 6 1 0 1: 5 7 1 0 1: M END 1: 1: test1 1: RDKit 2D 1: 1: 12 12 0 0 0 0 0 0 0 0999 V2000 1: 0.3628 0.5403 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.5014 1.0435 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.3692 0.5467 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.2334 1.0497 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.1012 0.5529 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.3728 -0.4533 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.5086 -0.9565 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.3594 -0.4597 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2234 -0.9627 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.0912 -0.4657 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.0948 0.5341 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.9554 -0.9689 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 2 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 3 6 2 0 1: 6 7 1 0 1: 7 8 2 0 1: 8 9 1 0 1: 9 10 1 0 1: 10 11 2 0 1: 10 12 1 0 1: 8 1 1 0 1: M END 1: 1: test2 1: RDKit 2D 1: 1: 5 4 0 0 0 0 0 0 0 0999 V2000 1: -0.4980 0.7210 0.0000 Cl 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.0004 -0.1464 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.8678 -0.6440 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.5020 0.7182 0.0000 F 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.8642 -0.6488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 2 4 1 0 1: 2 5 1 0 1: M END 1: 7: [04:01:27] should not be silent 7: [04:01:27] should not be silent 7: Randomness seeded to: 3496873364 7: [04:01:27] should not be silent 7: [04:01:27] should not be silent 7: [04:01:27] should not be silent 7: [04:01:27] should not be silent 7: [04:01:27] should not be silent 7: [04:01:27] should not be silent 7: [04:01:27] should not be silent 7: [04:01:27] should not be silent 7: =============================================================================== 7: All tests passed (26 assertions in 3 test cases) 7: 4/246 Test #7: logTestsCatch .......................... Passed 0.02 sec test 9 Start 9: testFPB 9: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/testFPB 9: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs 9: Test timeout computed to be: 7200 test 10 Start 10: testMultiFPB 10: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/testMultiFPB 10: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs 10: Test timeout computed to be: 7200 test 11 Start 11: catchDataStructs 11: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/catchDataStructs 11: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs 11: Test timeout computed to be: 7200 test 12 Start 12: pyBV 12: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/testBV.py" 12: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap 12: Test timeout computed to be: 7200 8: Randomness seeded to: 2086175141 8: 10, 11, 14, 8: t1: 10, 11, 14, 8: t2: 10, 11, 15, 17, 8: t1|t2: 10, 11, 14, 15, 17, 8: t1&t2: 10, 11, 8: t1^t2: 14, 15, 17, 8: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 8: except 8: 10, 11, 14, 8: t1: 10, 11, 14, 8: t2: 10, 11, 15, 17, 8: t1|t2: 10, 11, 14, 15, 17, 8: t1&t2: 10, 11, 8: t1^t2: 14, 15, 17, 8: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 8: except 8: =============================================================================== 8: All tests passed (1055 assertions in 22 test cases) 8: 5/246 Test #8: testDataStructs ........................ Passed 0.05 sec test 13 Start 13: pyDiscreteValueVect 13: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/testDiscreteValueVect.py" 13: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap 13: Test timeout computed to be: 7200 9: Randomness seeded to: 817093778 9: =============================================================================== 9: All tests passed (632 assertions in 12 test cases) 9: 6/246 Test #9: testFPB ................................ Passed 0.05 sec test 14 Start 14: pyRealValueVect 14: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/testRealValueVect.py" 14: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap 14: Test timeout computed to be: 7200 11: Randomness seeded to: 2530490518 11: =============================================================================== 11: All tests passed (3 assertions in 1 test case) 11: 10: Randomness seeded to: 2511717990 10: =============================================================================== 10: All tests passed (228 assertions in 7 test cases) 10: 7/246 Test #10: testMultiFPB ........................... Passed 0.04 sec 8/246 Test #11: catchDataStructs ....................... Passed 0.04 sec test 15 Start 15: pySparseIntVect 15: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/testSparseIntVect.py" 15: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap 15: Test timeout computed to be: 7200 test 16 Start 16: pyFPB 16: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/DataStructs/Wrap/testFPB.py" 16: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataStructs/Wrap 16: Test timeout computed to be: 7200 1: cyclosporine a 1: RDKit 2D 1: 1: 85 85 0 0 0 0 0 0 0 0999 V2000 1: 1.4840 -0.8529 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.6174 -1.3521 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.6176 -2.3509 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.4860 -2.8479 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.4912 -3.8491 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.3504 -2.3385 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.3352 -1.3311 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 3.1902 -0.7993 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 3.1580 0.1961 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 4.0642 -1.2607 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 4.9260 -0.7295 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 4.9144 0.3303 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 5.7766 0.8337 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 4.0008 0.8409 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 3.8596 1.9125 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.8162 2.2071 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.2038 1.4219 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.2560 3.1855 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.5280 4.2325 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.7128 4.8927 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.8530 5.8895 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.7676 4.5077 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.0820 5.0835 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.9744 4.6151 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.8344 5.1337 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.9792 3.6203 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.8192 3.0813 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.7974 3.5817 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.7998 4.5809 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.7790 3.0789 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.8812 2.0705 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.1202 1.6015 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.4194 2.0931 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.0590 0.6211 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.8626 0.0983 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.8096 -0.8961 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -4.6470 -1.4375 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.9122 -1.3587 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.8776 -2.3565 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.9982 -2.8425 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.1382 -2.3311 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.9886 -3.8459 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.1202 -4.3461 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.2526 -3.8491 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.6116 -4.3521 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.2494 -2.8505 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.1228 -5.3475 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.2584 -5.8507 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.6092 -5.3541 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.2624 -6.8511 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.6018 -7.3547 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.5982 -8.3547 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.4624 -8.8579 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.9906 -5.8449 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.8520 -4.3501 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.7288 -2.8719 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.7098 -3.8701 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -4.6032 -2.3871 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.0646 -0.8235 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -4.7362 0.5679 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -5.5794 0.0605 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -5.5618 -0.9361 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -6.4498 0.5487 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.1628 0.1727 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -4.7698 1.6253 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -5.5952 2.1745 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -6.4896 1.7311 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -5.5292 3.1711 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -4.6054 3.6407 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.7186 2.0867 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.0328 6.0847 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 3.4396 4.6417 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 3.4580 5.6909 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 4.3220 6.1985 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.5836 6.2065 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.2682 3.0557 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 4.6630 2.5215 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 5.5876 2.1073 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 4.5648 3.5065 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 5.7968 -1.2481 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 6.6786 -0.7913 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 7.5218 -1.3355 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 6.7252 0.2017 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 4.0970 -2.2659 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 3.2220 -2.8307 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 3 2 1 1 1: 3 4 1 0 1: 4 5 2 0 1: 4 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 2 0 1: 8 10 1 0 1: 10 11 1 0 1: 11 12 1 0 1: 12 13 2 0 1: 12 14 1 0 1: 14 15 1 0 1: 15 16 1 0 1: 16 17 2 0 1: 16 18 1 0 1: 18 19 1 0 1: 19 20 1 0 1: 20 21 2 0 1: 20 22 1 0 1: 22 23 1 0 1: 23 24 1 0 1: 24 25 2 0 1: 24 26 1 0 1: 26 27 1 0 1: 27 28 1 0 1: 28 29 2 0 1: 28 30 1 0 1: 30 31 1 0 1: 31 32 1 0 1: 32 33 2 0 1: 32 34 1 0 1: 34 35 1 0 1: 35 36 1 0 1: 36 37 2 0 1: 36 38 1 0 1: 38 39 1 0 1: 39 40 1 0 1: 40 41 2 0 1: 40 42 1 0 1: 43 42 1 6 1: 43 44 1 0 1: 44 45 2 0 1: 44 46 1 0 1: 43 47 1 0 1: 47 48 1 0 1: 48 49 1 6 1: 48 50 1 0 1: 50 51 1 0 1: 51 52 2 0 1: 52 53 1 0 1: 47 54 1 1 1: 42 55 1 0 1: 39 56 1 6 1: 56 57 1 0 1: 56 58 1 0 1: 38 59 1 0 1: 35 60 1 6 1: 60 61 1 0 1: 61 62 1 0 1: 61 63 1 0 1: 34 64 1 0 1: 31 65 1 6 1: 65 66 1 0 1: 66 67 1 0 1: 66 68 1 0 1: 30 69 1 0 1: 27 70 1 6 1: 23 71 1 6 1: 19 72 1 6 1: 72 73 1 0 1: 73 74 1 0 1: 73 75 1 0 1: 18 76 1 0 1: 15 77 1 6 1: 77 78 1 0 1: 77 79 1 0 1: 11 80 1 6 1: 80 81 1 0 1: 81 82 1 0 1: 81 83 1 0 1: 10 84 1 0 1: 6 85 1 0 1: 46 3 1 0 1: M END 1: 1: single-double 1: RDKit 2D 1: 1: 17 16 0 0 0 0 0 0 0 0999 V2000 1: -6.9282 -0.2298 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -6.0618 0.2696 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -5.1962 -0.2312 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -4.3298 0.2682 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -3.4642 -0.2326 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.5978 0.2668 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.7322 -0.2340 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.8658 0.2654 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.0002 -0.2352 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.8662 0.2640 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.7318 -0.2366 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.5982 0.2626 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 3.4638 -0.2380 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 4.3302 0.2612 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 5.1958 -0.2394 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 6.0622 0.2598 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: 6.9278 -0.2408 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 5 6 2 3 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 9 10 1 0 1: 10 11 2 3 1: 11 12 1 0 1: 12 13 2 3 1: 13 14 1 0 1: 14 15 2 3 1: 15 16 1 0 1: 16 17 1 0 1: M END 1: 1: cis-trans 1: RDKit 2D 1: 1: 10 9 0 0 0 0 0 0 0 0999 V2000 1: -3.6370 -0.2028 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1: -2.7706 -0.7022 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.9050 -0.2016 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.0386 -0.7008 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.1730 -0.2002 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.6934 -0.6994 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.5590 -0.1988 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.5582 0.8012 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 2.4238 1.3020 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 3.2902 0.8026 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 2 0 1: 3 4 1 0 1: 4 5 2 0 1: 5 6 1 0 1: 6 7 2 0 1: 7 8 1 0 1: 8 9 2 0 1: 9 10 1 0 1: M END 1: 1: admntn 1: RDKit 2D 1: 1: 10 12 0 0 0 0 0 0 0 0999 V2000 1: 1.3505 -0.5360 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.5267 -1.1020 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4629 -1.0366 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.7523 0.0052 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -1.4741 0.5660 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.4761 0.5032 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.3505 1.0730 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1.0611 0.5080 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 0.0643 0.5686 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: -0.1877 -0.5490 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 3 4 1 0 1: 4 5 1 0 1: 5 6 1 0 1: 6 7 1 0 1: 7 8 1 0 1: 8 9 1 0 1: 6 10 1 0 1: 8 1 1 0 1: 9 4 1 0 1: 10 2 1 0 1: M END 1: 1: github 4845 - nan coordinates but no crash 1: RDKit 2D 1: 1: 42 44 0 0 0 0 0 0 0 0999 V2000 1: nan nan nan H 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan H 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan H 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan H 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan H 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan H 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan O 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan H 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan H 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan O 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan C 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan H 0 0 0 0 0 0 0 0 0 0 0 0 1: nan nan nan H 0 0 0 0 0 0 0 0 0 0 0 0 1: 1 2 1 0 1: 2 3 1 0 1: 2 4 2 0 1: 4 5 1 0 1: 5 6 3 0 1: 6 7 1 0 1: 7 8 2 0 1: 8 9 1 0 1: 9 10 3 0 1: 10 11 1 0 1: 11 12 2 0 1: 12 13 1 0 1: 13 14 3 0 1: 14 15 1 0 1: 15 16 2 0 1: 16 17 1 0 1: 16 18 1 0 1: 12 19 1 0 1: 19 20 2 0 1: 20 21 1 0 1: 20 22 1 0 1: 19 23 1 0 1: 23 24 3 0 1: 24 25 1 0 1: 25 26 1 0 1: 26 27 2 0 1: 27 28 2 0 1: 26 29 1 0 1: 29 30 3 0 1: 8 31 1 0 1: 31 32 2 0 1: 32 33 1 0 1: 32 34 1 0 1: 31 35 1 0 1: 35 36 3 0 1: 36 37 1 0 1: 37 38 2 0 1: 37 39 1 0 1: 39 40 2 0 1: 40 41 1 0 1: 40 42 1 0 1: 39 4 1 0 1: 15 7 1 0 1: 30 11 1 0 1: M END 1: 9/246 Test #1: testCoordGen ........................... Passed 0.32 sec test 17 Start 17: testTransforms 17: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/testTransforms 17: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry 17: Test timeout computed to be: 7200 17: Randomness seeded to: 228199316 17: Pt1: 1 0 0 Pt2: 2 0 0 17: -Pt1: -1 -0 -0 17: tp1: 0 0 0 tp2: 0 0 0 17: tp1: 0 0 0 tp2: 0 0 0 17: tp1: 0 0 3 tp2: 0 0 3 17: npt1: 0 0 3 npt2: 0 0 4 17: Pt1: 0 0 3 Pt2: 6.12323e-17 0 4 17: =============================================================================== 17: All tests passed (155 assertions in 7 test cases) 17: 10/246 Test #17: testTransforms ......................... Passed 0.01 sec test 18 Start 18: testGrid 18: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/testGrid 18: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry 18: Test timeout computed to be: 7200 18: Randomness seeded to: 3399407549 18: =============================================================================== 18: All tests passed (79 assertions in 5 test cases) 18: 11/246 Test #18: testGrid ............................... Passed 0.02 sec test 19 Start 19: testRealValueGrid 19: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/testRealValueGrid 19: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry 19: Test timeout computed to be: 7200 19: Randomness seeded to: 2257292198 19: =============================================================================== 19: All tests passed (52 assertions in 4 test cases) 19: 12/246 Test #19: testRealValueGrid ...................... Passed 0.03 sec test 20 Start 20: geometryTestsCatch 20: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/geometryTestsCatch 20: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry 20: Test timeout computed to be: 7200 20: Randomness seeded to: 937233607 20: =============================================================================== 20: All tests passed (50 assertions in 5 test cases) 20: 13/246 Test #20: geometryTestsCatch ..................... Passed 0.01 sec test 21 Start 21: testPyGeometry 21: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/Geometry/Wrap/testGeometry.py" 21: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Geometry/Wrap 21: Test timeout computed to be: 7200 15: ......... 15: ---------------------------------------------------------------------- 15: Ran 9 tests in 0.008s 15: 15: OK 14/246 Test #15: pySparseIntVect ........................ Passed 0.36 sec test 22 Start 22: testMatrices 22: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/testMatrices 22: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics 22: Test timeout computed to be: 7200 22: Randomness seeded to: 514743438 22: =============================================================================== 22: All tests passed (81 assertions in 4 test cases) 22: 15/246 Test #22: testMatrices ........................... Passed 0.01 sec test 23 Start 23: testConrec 23: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/testConrec 23: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics 23: Test timeout computed to be: 7200 23: Randomness seeded to: 566913632 23: =============================================================================== 23: All tests passed (76 assertions in 3 test cases) 23: 16/246 Test #23: testConrec ............................. Passed 0.02 sec test 24 Start 24: testAlignment 24: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment/testAlignment 24: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment 24: Test timeout computed to be: 7200 24: Randomness seeded to: 3413198373 24: =============================================================================== 24: All tests passed (26 assertions in 4 test cases) 24: 17/246 Test #24: testAlignment .......................... Passed 0.01 sec test 25 Start 25: pyAlignment 25: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/Numerics/Alignment/Wrap/testAlignment.py" 25: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Alignment/Wrap 25: Test timeout computed to be: 7200 2: .... 2: ---------------------------------------------------------------------- 2: Ran 4 tests in 0.039s 2: 2: OK 18/246 Test #2: pyCoordGen ............................. Passed 0.56 sec test 26 Start 26: testOptimizer 26: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer/testOptimizer 26: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Numerics/Optimizer 26: Test timeout computed to be: 7200 26: Randomness seeded to: 591201143 26: =============================================================================== 26: All tests passed (26 assertions in 2 test cases) 26: 19/246 Test #26: testOptimizer .......................... Passed 0.01 sec test 27 Start 27: ForceFieldsCatch 27: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/ForceFieldsCatch 27: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField 27: Test timeout computed to be: 7200 13: ...... 13: ---------------------------------------------------------------------- 13: Ran 6 tests in 0.008s 13: 13: OK 27: Randomness seeded to: 1616819734 27: =============================================================================== 27: All tests passed (20 assertions in 2 test cases) 27: 20/246 Test #27: ForceFieldsCatch ....................... Passed 0.03 sec test 28 Start 28: testUFFForceField 28: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/UFF/testUFFForceField 28: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/UFF 28: Test timeout computed to be: 7200 14: ...... 14: ---------------------------------------------------------------------- 14: Ran 6 tests in 0.006s 14: 14: OK 28: ------------------------------------- 28: Unit tests for force field basics. 28: done 28: ------------------------------------- 28: Unit tests for basics of UFF bond-stretch terms. 28: done 28: ------------------------------------- 28: Unit tests for UFF bond-stretch terms. 28: done 28: ------------------------------------- 28: Unit tests for basics of UFF angle terms. 28: done 28: ------------------------------------- 28: Unit tests for UFF angle-bend terms. 28: theta = 3.14159; theta0 = 3.14159 28: theta = 2.094395, param1.theta0 = 2.094395 28: done 28: ------------------------------------- 28: Test Simple UFF molecule optimizations. 28: done 28: ------------------------------------- 28: Unit tests for UFF nonbonded terms. 28: done 28: ------------------------------------- 28: Test UFF torsional terms. 28: done 28: ------------------------------------- 28: Test UFF Parameter objects 28: ------------------------------------- 28: Test Simple UFF molecule optimization, part 2. 28: done 28: ------------------------------------- 28: Test UFF Torsion Conflicts. 28: C 0.4783 -0.7477 -0.0753 28: C -0.5465 -0.0176 0.3519 28: C -0.5114 1.4472 0.0870 28: H -1.5201 -0.4838 0.2485 28: H 0.4696 1.8363 0.3367 28: O -1.2618 1.9423 0.6934 28: F -0.7163 1.6298 -0.9622 28: done 28: ------------------------------------- 28: Unit tests for UFF distance constraint terms. 28: done 28: ------------------------------------- 28: Unit tests for all UFF constraint terms. 16: ......... 16: ---------------------------------------------------------------------- 16: Ran 9 tests in 0.018s 16: 16: OK 21: .................... 21: ---------------------------------------------------------------------- 21: Ran 20 tests in 0.031s 21: 21: OK 21: Testing Geometry wrapper 21/246 Test #21: testPyGeometry ......................... Passed 0.29 sec test 29 Start 29: testMMFFForceField 29: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/MMFF/testMMFFForceField 29: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/MMFF 29: Test timeout computed to be: 7200 22/246 Test #13: pyDiscreteValueVect .................... Passed 0.61 sec test 30 Start 30: pyForceFieldConstraints 30: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/ForceField/Wrap/testConstraints.py" 30: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ForceField/Wrap 30: Test timeout computed to be: 7200 23/246 Test #14: pyRealValueVect ........................ Passed 0.62 sec test 31 Start 31: testDistGeom 31: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom/testDistGeom 31: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom 31: Test timeout computed to be: 7200 29: ------------------------------------- 29: Official MMFF validation suite. 31: Randomness seeded to: 2895583373 31: Rows: 4 Columns: 4 31: 0 1 1 1 31: 1 0 1 1 31: 1 1 0 1 31: 1 1 1 0 31: =============================================================================== 31: All tests passed (28 assertions in 2 test cases) 31: 24/246 Test #31: testDistGeom ........................... Passed 0.02 sec test 32 Start 32: pyDistGeom 32: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/DistGeom/Wrap/rough_test.py" 32: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DistGeom/Wrap 32: Test timeout computed to be: 7200 28: done 28: ------------------------------------- 28: Unit tests for copying UFF ForceFields. 25/246 Test #16: pyFPB .................................. Passed 0.65 sec test 33 Start 33: graphmolTest1 33: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 33: Test timeout computed to be: 7200 28: done 28: ------------------------------------- 28: Unit test for UFF butane scan. 33: Atoms: 33: 0 8 O chg: 0 deg: 2 exp: 2 imp: 0 hyb: 33: 1 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: 33: 2 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: 33: 3 6 C chg: 0 deg: 1 exp: 1 imp: 3 hyb: 33: 4 6 C chg: 0 deg: 1 exp: 1 imp: 3 hyb: 33: 5 6 C chg: 0 deg: 1 exp: 3 imp: 1 hyb: 33: 6 6 C chg: 0 deg: 2 exp: 4 imp: 0 hyb: 33: 7 7 N chg: 0 deg: 2 exp: 1 imp: 2 hyb: arom?: 1 query: AtomAtomicNum 33: 8 22 Ti chg: 0 deg: 1 exp: N/A imp: N/A hyb: 33: Bonds: 33: 0 0->1 order: 1 33: 1 1->2 order: 2 33: 2 2->3 order: 1 33: 3 0->4 order: 1 33: 4 5->6 order: 3 33: 5 6->7 order: 1 33: 6 7->8 order: 2 33: [04:01:28] 33: 33: **** 33: Pre-condition Violation 33: bond already exists 33: Violation occurred on line 506 in file ./Code/GraphMol/RWMol.cpp 33: Failed Expression: !(boost::edge(atomIdx1, atomIdx2, d_graph).second) 33: ---------- 33: Stacktrace: 33: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 2# RDKit::RWMol::addBond(unsigned int, unsigned int, RDKit::Bond::BondType) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 33: 3# 0x000000012DB2CE28 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 4# 0x000000012DB23968 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 5# 0x00007FFFACA27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: 6# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: ---------- 33: **** 33: 33: [04:01:28] 33: 33: **** 33: Pre-condition Violation 33: bond already exists 33: Violation occurred on line 506 in file ./Code/GraphMol/RWMol.cpp 33: Failed Expression: !(boost::edge(atomIdx1, atomIdx2, d_graph).second) 33: ---------- 33: Stacktrace: 33: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 2# RDKit::RWMol::addBond(unsigned int, unsigned int, RDKit::Bond::BondType) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 33: 3# 0x000000012DB2D0B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 4# 0x000000012DB23968 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 5# 0x00007FFFACA27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: 6# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: ---------- 33: **** 33: 33: [04:01:28] 33: 33: **** 33: Pre-condition Violation 33: attempt to add self-bond 33: Violation occurred on line 505 in file ./Code/GraphMol/RWMol.cpp 33: Failed Expression: atomIdx1 != atomIdx2 33: ---------- 33: Stacktrace: 33: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 2# RDKit::RWMol::addBond(unsigned int, unsigned int, RDKit::Bond::BondType) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 33: 3# 0x000000012DB2D1CC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 4# 0x000000012DB23968 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 5# 0x00007FFFACA27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: 6# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: ---------- 33: **** 33: 33: [04:01:28] 33: 33: **** 33: Pre-condition Violation 33: bond already exists 33: Violation occurred on line 419 in file ./Code/GraphMol/ROMol.cpp 33: Failed Expression: !(boost::edge(bond_pin->getBeginAtomIdx(), bond_pin->getEndAtomIdx(), d_graph) .second) 33: ---------- 33: Stacktrace: 33: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 2# RDKit::ROMol::addBond(RDKit::Bond*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 33: 3# 0x000000012DB2D220 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 4# 0x000000012DB23968 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 5# 0x00007FFFACA27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: 6# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: ---------- 33: **** 33: 33: [04:01:28] 33: 33: **** 33: Pre-condition Violation 33: attempt to add self-bond 33: Violation occurred on line 417 in file ./Code/GraphMol/ROMol.cpp 33: Failed Expression: bond_pin->getBeginAtomIdx() != bond_pin->getEndAtomIdx() 33: ---------- 33: Stacktrace: 33: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 2# RDKit::ROMol::addBond(RDKit::Bond*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 33: 3# 0x000000012DB2D458 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 4# 0x000000012DB23968 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 5# 0x00007FFFACA27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: 6# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: ---------- 33: **** 33: 33: [04:01:28] Explicit valence for atom # 0 B, 4, is greater than permitted 33: [04:01:28] Explicit valence for atom # 0 B, 4, is greater than permitted 25: ..... 25: ---------------------------------------------------------------------- 25: Ran 5 tests in 0.001s 25: 25: OK 25: Testing Alignment Wrapper code: 33: [04:01:28] 33: 33: **** 33: Post-condition Violation 33: Element 'Xx' not found 33: Violation occurred on line 93 in file ./Code/GraphMol/PeriodicTable.h 33: Failed Expression: anum > -1 33: ---------- 33: Stacktrace: 33: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string, std::allocator > const&) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 3# 0x000000012DB63AB8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 4# 0x000000012DB3E9E8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 5# 0x000000012DB23980 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 6# 0x00007FFFACA27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: 7# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: ---------- 33: **** 33: 33: [04:01:28] ------------------------------------- 33: [04:01:28] Test github381: thread-safe initialization of the periodic table 33: [04:01:28] done 33: [04:01:28] ------------------------------------- 33: [04:01:28] Test github1041: Segfault for atom with no owner (expect some warnings) 33: [04:01:28] 33: 33: **** 33: Pre-condition Violation 33: no owner 33: Violation occurred on line 153 in file ./Code/GraphMol/Atom.h 33: Failed Expression: dp_mol 33: ---------- 33: Stacktrace: 33: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 2# 0x000000012DB4FDE4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 3# 0x000000012DB239C8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 4# 0x00007FFFACA27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: 5# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: ---------- 33: **** 33: 33: [04:01:28] 33: 33: **** 33: Pre-condition Violation 33: no owner 33: Violation occurred on line 187 in file ./Code/GraphMol/Bond.h 33: Failed Expression: dp_mol 33: ---------- 33: Stacktrace: 33: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 2# 0x000000012DB50340 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 3# 0x000000012DB239C8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 4# 0x00007FFFACA27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: 5# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: ---------- 33: **** 33: 33: [04:01:28] done 33: [04:01:28] ------------------------------------- 33: [04:01:28] Test github1041: Segfault for atom with no owner (expect some warnings) 33: [04:01:28] 33: 33: **** 33: Pre-condition Violation 33: no owner 33: Violation occurred on line 153 in file ./Code/GraphMol/Atom.h 33: Failed Expression: dp_mol 33: ---------- 33: Stacktrace: 33: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 2# 0x000000012DB4FDE4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 3# 0x000000012DB239D0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 4# 0x00007FFFACA27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: 5# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: ---------- 33: **** 33: 33: [04:01:28] 33: 33: **** 33: Pre-condition Violation 33: no owner 33: Violation occurred on line 187 in file ./Code/GraphMol/Bond.h 33: Failed Expression: dp_mol 33: ---------- 33: Stacktrace: 33: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 33: 2# 0x000000012DB50340 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 3# 0x000000012DB239D0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTest1 33: 4# 0x00007FFFACA27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: 5# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 33: ---------- 33: **** 33: 33: [04:01:28] done 33: [04:01:28] ------------------------------------- 33: [04:01:28] Test github1453: RWMol.clear() should reset the numBonds count. 33: [04:01:28] done 33: [04:01:28] ------------------------------------- 33: [04:01:28] Test range-based for loops. 33: [04:01:28] done 33: [04:01:28] ------------------------------------- 33: [04:01:28] Test github1642: Atom index type is too low for big molecules. 26/246 Test #25: pyAlignment ............................ Passed 0.34 sec test 34 Start 34: graphmolcpTest 34: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolcpTest 34: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 34: Test timeout computed to be: 7200 34: 34: 34: 34: COPY 27/246 Test #34: graphmolcpTest ......................... Passed 0.02 sec test 35 Start 35: graphmolqueryTest 35: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolqueryTest 35: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 35: Test timeout computed to be: 7200 29: 29: Computing MMFF94 energies for /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/test_data/MMFF94_dative.sdf... 35: [04:01:28] ---------------------- Test1 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test2 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test3 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test4 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test5 35: [04:01:28] Done! 35: [04:01:28] 35: 35: **** 35: Pre-condition Violation 35: Can't expand empty query 35: Violation occurred on line 30 in file ./Code/GraphMol/QueryAtom.cpp 35: Failed Expression: dp_query 35: ---------- 35: Stacktrace: 35: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 35: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 35: 2# RDKit::QueryAtom::expandQuery(Queries::Query*, Queries::CompositeQueryType, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 35: 3# 0x000000013B278B14 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolqueryTest 35: 4# 0x000000013B270408 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolqueryTest 35: 5# 0x00007FFF8A827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 35: 6# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 35: ---------- 35: **** 35: 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test issue 2892580 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test github issue 53: query molecules not matching [R] 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test queries using qualifiers instead of == 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test Github issue 165: radicals not used in atom-atom matching 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test extra atom queries 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test extra bond queries 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test num heteroatom neighbor queries 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test atom type queries 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Test Github #2471: dummy atom queries are flagged as complex 35: [04:01:28] Done! 35: [04:01:28] ---------------------- Testing hasBondTypeQuery() and hasComplexBondTypeQuery() 35: [04:01:28] Done! 28/246 Test #35: graphmolqueryTest ...................... Passed 0.03 sec test 36 Start 36: graphmolMolOpsTest 36: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolMolOpsTest 36: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 36: Test timeout computed to be: 7200 36: 1 1 2 36: 1 1 1 36: 2 1 0.75 36: path: 2 36: [04:01:28] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 10 ignored 36: [04:01:28] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 10 ignored 36: [04:01:28] Explicit valence for atom # 0 B, 5, is greater than permitted 36: [04:01:28] Explicit valence for atom # 1 C, 5, is greater than permitted 36: [04:01:28] Explicit valence for atom # 1 C, 5, is greater than permitted 36: [04:01:28] Explicit valence for atom # 1 C, 5, is greater than permitted 36: [04:01:28] Explicit valence for atom # 1 Si, 7, is greater than permitted 28: done 29/246 Test #28: testUFFForceField ...................... Passed 0.36 sec test 37 Start 37: graphmoltestChirality 37: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmoltestChirality 37: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 37: Test timeout computed to be: 7200 36: smi: Cc1ccc(S(=O)(=O)/N=C2\CC(=N\C(C)(C)C)/C2=N\C(C)(C)C)cc1 32: ...... 32: ---------------------------------------------------------------------- 32: Ran 6 tests in 0.003s 32: 32: OK 37: -------------------------- 37: -------------------------- 37: C/C=C/C(C)Cl 36: [04:01:28] non-ring atom 0 marked aromatic 36: [04:01:28] non-ring atom 0 marked aromatic 36: [04:01:28] Conflicting single bond directions around double bond at index 17. 36: [04:01:28] BondStereo set to STEREONONE and single bond directions set to NONE. 36: starting ring finding 36: done 36: starting ring finding 36: done 36: starting ring finding 36: done 36: C/C=N/c1ccc(cc1)c1cc2cc(c1)c1ccc(cc1)N=Cc1ccc(cc1)c1cc(cc(c1)c1ccc(cc1)C)c1ccc(cc1)C=Nc1ccc(cc1)c1cc(cc(c1)c1ccc(cc1)/N=C/C)c1ccc(cc1)N=Cc1ccc(cc1)c1cc(c3ccc(C=Nc4ccc(c5cc6c7ccc(N=Cc8ccc(c9cc(c%10ccc(C=Nc%11ccc2cc%11)cc%10)cc(c9)c2ccc(cc2)C=Nc2ccc(cc2)c2cc(cc(c2)c2ccc(cc2)N=Cc2ccc(cc2)c2cc(cc(c2)c2ccc(cc2)C)c2ccc(cc2)C=Nc2ccc(cc2)c2cc(c9ccc(N=Cc%10ccc(c%11cc(c%12ccc(C=Nc%13ccc(c(c6)c5)cc%13)cc%12)cc(c%11)c5ccc(cc5)C)cc%10)cc9)cc(c2)c2ccc(cc2)/N=C/C)c2ccc(cc2)/N=C/C)cc8)cc7)cc4)cc3)cc(c1)c1ccc(cc1)C 36: starting sanitization 36: done 36: starting sanitization 36: done 36: starting ring finding 36: done 36: starting ring finding 36: done 36: smiles: CC[C@]1(C(=O)c([nH])n)CC[C@](C)(O)CC1 37: [04:01:28] Conflicting single bond directions around double bond at index 2. 37: [04:01:28] BondStereo set to STEREONONE and single bond directions set to NONE. 37: [04:01:28] Conflicting single bond directions around double bond at index 4. 37: [04:01:28] BondStereo set to STEREONONE and single bond directions set to NONE. 37: [04:01:28] Conflicting single bond directions around double bond at index 15. 37: [04:01:28] BondStereo set to STEREONONE and single bond directions set to NONE. 37: [04:01:28] Conflicting single bond directions around double bond at index 2. 37: [04:01:28] BondStereo set to STEREONONE and single bond directions set to NONE. 37: [04:01:28] Conflicting single bond directions around double bond at index 1. 37: [04:01:28] BondStereo set to STEREONONE and single bond directions set to NONE. 36: [04:01:28] WARNING: not removing hydrogen atom with dummy atom neighbors 36: ------------------------------- 36: [04:01:28] Explicit valence for atom # 0 N, 4, is greater than permitted 36: [04:01:28] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 36: [04:01:28] Can't kekulize mol. Unkekulized atoms: 6 7 8 9 10 36: [04:01:28] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 36: [04:01:28] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged 36: [04:01:28] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged 36: [04:01:28] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged 36: [04:01:28] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged 36: [04:01:28] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged 36: 37: -------------------------------------------------- 36: [04:01:28] WARNING: not removing hydrogen atom with dummy atom neighbors 30/246 Test #37: graphmoltestChirality .................. Passed 0.10 sec test 38 Start 38: graphmoltestPickler 38: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmoltestPickler 38: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 38: Test timeout computed to be: 7200 31/246 Test #32: pyDistGeom ............................. Passed 0.33 sec test 39 Start 39: graphmoltestPicklerGlobalSetting 39: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmoltestPicklerGlobalSetting 39: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 39: Test timeout computed to be: 7200 38: [04:01:28] ------------------------------------- 38: [04:01:28] Testing String Pickle Roundtrips. 39: [04:01:28] done 32/246 Test #39: graphmoltestPicklerGlobalSetting ....... Passed 0.03 sec test 40 Start 40: graphmolIterTest 40: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolIterTest 40: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 40: Test timeout computed to be: 7200 30: ...[04:01:28] Molecule does not have explicit Hs. Consider calling AddHs() 33/246 Test #40: graphmolIterTest ....................... Passed 0.03 sec test 41 Start 41: hanoiTest 41: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/hanoiTest 41: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 41: Test timeout computed to be: 7200 41: [04:01:28] Testing the hanoi sort 41: [04:01:28] populating vectors 38: [04:01:28] done 38: [04:01:28] ------------------------------------- 38: [04:01:28] Testing reading existing pickle file (v2). 38: [04:01:28] done 38: [04:01:28] ------------------------------------- 38: [04:01:28] Testing combining molecules using pickles. 38: Atoms: 38: 0 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: SP3 38: 1 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: SP3 38: 2 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: SP3 38: 3 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: SP3 38: 4 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: SP3 38: 5 8 O chg: 0 deg: 2 exp: 2 imp: 0 hyb: SP3 38: 6 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: SP3 38: Bonds: 38: 0 0->1 order: 1 38: 1 1->2 order: 1 38: 2 2->0 order: 1 38: 3 3->4 order: 1 38: 4 4->5 order: 1 38: 5 5->6 order: 1 38: 6 6->3 order: 1 38: [04:01:28] done 38: [04:01:28] ------------------------------------- 38: [04:01:28] Testing Issue164: Roundtrip Pickle Failure. 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing Issue219: Pickle Failure with Conformations. 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing Issue220: Pickle problems with bond stereochemistry. 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing query serialization. 38: [04:01:29] C=[$(C=O)] 38: [04:01:29] S(=O)(=O)-[C&H2][F,Br,I,Cl] S(=O)(=O)-[C&H2][F,Br,I,Cl] 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing radical handling in pickles. 38: [04:01:29] done 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing sf.net issue 2788233. 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing sf.net issue 3202580. 38: mass! 13.0034 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing sf.net issue 3316407. 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing sf.net issue 3496759. 38: smi match: *C *C 38: smi match: **=* **=* 38: smi match: [N-]=[N+]=NC=O [N-]=[N+]=NC=O 38: smi match: *OS(=O)OC *OS(=O)OC 38: smi match: *S(=O)(=O)OC *S(=O)(=O)OC 38: smi match: O=COC=O O=COC=O 38: smi match: OO OO 38: smi match: O=COc1c(F)c(F)c(F)c(F)c1F O=COc1c(F)c(F)c(F)c(F)c1F 38: smi match: O=COc1ccc(N(=O)=O)cc1 O=COc1ccc(N(=O)=O)cc1 38: smi match: nnnOC=O nnnOC=O 38: smi match: *=C=N *=C=N 38: smi match: OS(=O)(=O)C(F)(F)F OS(=O)(=O)C(F)(F)F 38: smi match: SP(S)=S SP(S)=S 38: smi match: NP(N)(N)=O NP(N)(N)=O 38: smi match: cN=[N+]=[N-] cN=[N+]=[N-] 38: smi match: *CC=O *CC=O 38: smi match: NNC=O NNC=O 38: smi match: * * 38: smi match: C=P C=P 38: smi match: CC(=N)Cl CC(=N)Cl 38: smi match: N=O N=O 38: smi match: ** ** 38: smi match: N=C=N N=C=N 38: smi match: [C-]#[NH+] [C-]#[NH+] 38: smi match: O=CON(C=O)C=O O=CON(C=O)C=O 38: smi match: N#CC[OH] N#CC[OH] 38: smi match: N#CC=O N#CC=O 38: smi match: N#CS(=O)=O N#CS(=O)=O 38: smi match: CCOP(=O)(C#N)OCC CCOP(=O)(C#N)OCC 38: smi match: N#CN=N N#CN=N 38: smi match: N=NCC=O N=NCC=O 38: smi match: CCCCCCC CCCCCCC 38: smi match: OCCOCCO OCCOCCO 38: smi match: SS SS 38: smi match: [SH] [SH] 38: smi match: *1CC1 *1CC1 38: smi match: [OH]ccc([OH])c[OH] [OH]ccc([OH])c[OH] 38: smi match: [OH]cc([OH])c[OH] [OH]cc([OH])c[OH] 38: smi match: NC(=S)N=N NC(=S)N=N 38: smi match: N#CS N#CS 38: smi match: cC[N+] cC[N+] 38: smi match: C*C=S C*C=S 38: smi match: N[CH2]C#N N[CH2]C#N 38: smi match: O=C1CCO1 O=C1CCO1 38: smi match: O=P([OH])OP(=O)[OH] O=P([OH])OP(=O)[OH] 38: smi match: O=C1CCN1 O=C1CCN1 38: smi match: O=C1C~CC(=O)C~C1 O=C1C~CC(=O)C~C1 38: smi match: C=CC=CC=CC=C C=CC=CC=CC=C 38: smi match: C1CCC(OC2CCC3CCCCC3C2)OC1 C1CCC(OC2CCC3CCCCC3C2)OC1 38: smi match: O=C1NCC2CCCCC21 O=C1NCC2CCCCC21 38: smi match: O=C1CCCC(=O)N1 O=C1CCCC(=O)N1 38: smi match: C1CCC(C2CCCO2)OC1 C1CCC(C2CCCO2)OC1 38: smi match: [OH]C1Cc2c([OH])cc([OH])cc2OC1c1ccc([OH])c([OH])c1 [OH]C1Cc2c([OH])cc([OH])cc2OC1c1ccc([OH])c([OH])c1 38: smi match: C1CC2CCC(O1)O2 C1CC2CCC(O1)O2 38: smi match: cN(=O)~O cN(=O)~O 38: smi match: *[CH2]N1C(=O)CCC1=O *[CH2]N1C(=O)CCC1=O 38: smi match: N~NC=O N~NC=O 38: smi match: *=N~C *=N~C 38: smi match: CO*(=O)=O CO*(=O)=O 38: smi match: * * 38: smi match: * * 38: smi match: *C=C *C=C 38: smi match: N#CS N#CS 38: smi match: *C=S *C=S 38: smi match: *N *N 38: smi match: *C(=C)C=O *C(=C)C=O 38: smi match: *C#C *C#C 38: smi match: N#CCO N#CCO 38: smi match: O=N(=O)CCO O=N(=O)CCO 38: smi match: N=CS N=CS 38: smi match: O=CNC(O)C=O O=CNC(O)C=O 38: smi match: C=C(C=O)C=O C=C(C=O)C=O 38: smi match: N=CC=O N=CC=O 38: smi match: *C(C=O)C=O *C(C=O)C=O 38: smi match: *C(C=O)=C(*)C=O *C(C=O)=C(*)C=O 38: smi match: O=CC=CC=O O=CC=CC=O 38: smi match: O=CN(O)C=O O=CN(O)C=O 38: smi match: O=CN(S)C=O O=CN(S)C=O 38: smi match: O=CNC=O O=CNC=O 38: smi match: O=CNN=O O=CNN=O 38: smi match: O=CNNC=O O=CNNC=O 38: smi match: O=CNOC=O O=CNOC=O 38: smi match: O=CS O=CS 38: smi match: O=CSC=S O=CSC=S 38: smi match: S=CS S=CS 38: smi match: C=O C=O 38: smi match: *C=N *C=N 38: smi match: CCCCCCC CCCCCCC 38: smi match: CN=O CN=O 38: smi match: CS(=O)(=O)O CS(=O)(=O)O 38: smi match: O=C1CCO1 O=C1CCO1 38: smi match: C=C(S)[SH]=O C=C(S)[SH]=O 38: smi match: C=CCO C=CCO 38: smi match: C=CC=N C=CC=N 38: smi match: C=CC=O C=CC=O 38: smi match: C=CC(=O)C=C C=CC(=O)C=C 38: smi match: C=CC=S C=CC=S 38: smi match: C=CC(=S)S C=CC(=S)S 38: smi match: *C=C(*)C=C *C=C(*)C=C 38: smi match: C=CC=N C=CC=N 38: smi match: *N(*)C=C *N(*)C=C 38: smi match: C=CN(=O)=O C=CN(=O)=O 38: smi match: C=CN(O)=O C=CN(O)=O 38: smi match: C=CO C=CO 38: smi match: C=COC=O C=COC=O 38: smi match: C=CS C=CS 38: smi match: C=C[SH](=O)=O C=C[SH](=O)=O 38: smi match: C=NCO C=NCO 38: smi match: C=NC=O C=NC=O 38: smi match: C=NN C=NN 38: smi match: C=NN=C C=NN=C 38: smi match: C=NO C=NO 38: smi match: C=NOC=O C=NOC=O 38: smi match: C=N=O C=N=O 38: smi match: N#CS N#CS 38: smi match: *CN=O *CN=O 38: smi match: NCN NCN 38: smi match: ON=CCN=O ON=CCN=O 38: smi match: NC(S)=N[SH](=O)=O NC(S)=N[SH](=O)=O 38: smi match: N=C(N)S N=C(N)S 38: smi match: NC(=O)Oc1ccccc1 NC(=O)Oc1ccccc1 38: smi match: NC=S NC=S 38: smi match: NC(N)=S NC(N)=S 38: smi match: C=CN C=CN 38: smi match: NOC=O NOC=O 38: smi match: C1CN1 C1CN1 38: smi match: O=C1NNNN1 O=C1NNNN1 38: smi match: N=C(N)C(=N)N N=C(N)C(=N)N 38: smi match: N=C(N)O N=C(N)O 38: smi match: N=C(N)C(=N)S N=C(N)C(=N)S 38: smi match: *C=N *C=N 38: smi match: N=CC=O N=CC=O 38: smi match: N=CS N=CS 38: smi match: N=C=N N=C=N 38: smi match: N=C=O N=C=O 38: smi match: N=C=S N=C=S 38: smi match: NOC(=O)O NOC(=O)O 38: smi match: *C(O)=S *C(O)=S 38: smi match: C=CO C=CO 38: smi match: ON=CC=NO ON=CC=NO 38: smi match: *C[SH](=O)=O *C[SH](=O)=O 38: smi match: OS(=O)=O OS(=O)=O 38: smi match: N#CS N#CS 38: smi match: C=C(S)S C=C(S)S 38: smi match: N=C(N)S N=C(N)S 38: smi match: N=C(S)S N=C(S)S 38: smi match: NC(=S)S NC(=S)S 38: smi match: O=CNS O=CNS 38: smi match: S S 38: smi match: [SiH4] [SiH4] 38: smi match: NS NS 38: smi match: NCN NCN 38: smi match: cC(c)(O)O cC(c)(O)O 38: smi match: *C(c)O *C(c)O 38: smi match: C=CS(c)(=O)=O C=CS(c)(=O)=O 38: smi match: cS(=O)(=O)O cS(=O)(=O)O 38: smi match: *c1ccccn1=O *c1ccccn1=O 38: smi match: *c1ccccn1 *c1ccccn1 38: smi match: *c1nccccn1 *c1nccccn1 38: smi match: C1COCOC1 C1COCOC1 38: smi match: C=S C=S 38: smi match: c=S c=S 38: smi match: S=CS S=CS 38: smi match: C=CN(=O)=O C=CN(=O)=O 38: smi match: C=CN(=O)O C=CN(=O)O 38: smi match: N=CC=O N=CC=O 38: smi match: C=CS C=CS 38: smi match: SC(S)(S)S SC(S)(S)S 38: smi match: OS(O)(O)O OS(O)(O)O 38: smi match: O=N(=O)C[SH](=O)=O O=N(=O)C[SH](=O)=O 38: smi match: O=N(O)C[SH](=O)=O O=N(O)C[SH](=O)=O 38: smi match: N#CS N#CS 38: smi match: C=NO C=NO 38: smi match: C=N[SH]=N C=N[SH]=N 38: smi match: O=C(S)S O=C(S)S 38: smi match: N=C(S)S N=C(S)S 38: smi match: N=C(=N)S N=C(=N)S 38: smi match: O=N=O O=N=O 38: smi match: O=NO O=NO 38: smi match: ONO ONO 38: smi match: C1SCS1 C1SCS1 38: smi match: N=C=S N=C=S 38: smi match: N=C=N N=C=N 38: smi match: C1N=N1 C1N=N1 38: smi match: *CS *CS 38: smi match: SC(S)=C(S)S SC(S)=C(S)S 38: smi match: N=CC=NO N=CC=NO 38: smi match: N#CCC#N N#CCC#N 38: smi match: CON=O CON=O 38: smi match: C=CN C=CN 38: smi match: C=N[SH](=O)=O C=N[SH](=O)=O 38: smi match: NN=O NN=O 38: smi match: NC(=O)S NC(=O)S 38: smi match: N#CS N#CS 38: smi match: NC(=O)C(N)=O NC(=O)C(N)=O 38: smi match: c=N c=N 38: smi match: C1COCO1 C1COCO1 38: smi match: C=NN[SH](=O)=O C=NN[SH](=O)=O 38: smi match: O=CC=O O=CC=O 38: smi match: O=CNOC=O O=CNOC=O 38: smi match: O=C1C=CC(=O)C=C1 O=C1C=CC(=O)C=C1 38: smi match: ONO ONO 38: smi match: ON(~O)~O ON(~O)~O 38: smi match: OC1COC(O)C1 OC1COC(O)C1 38: smi match: OC1CCOC1O OC1CCOC1O 38: smi match: OC1CCOC(O)C1 OC1CCOC(O)C1 38: smi match: N=[N+]=N N=[N+]=N 38: smi match: N#CN N#CN 38: smi match: C=NN=C C=NN=C 38: smi match: *CCN(C)C *CCN(C)C 38: smi match: CNN CNN 38: smi match: *CC *CC 38: smi match: OCS OCS 38: smi match: C1NO1 C1NO1 38: smi match: COS(C)(=O)=O COS(C)(=O)=O 38: smi match: C1CO1 C1CO1 38: smi match: *c1-c-c-ccN1 *c1-c-c-ccN1 38: smi match: *C(*)=C *C(*)=C 38: smi match: N#[NH+] N#[NH+] 38: smi match: C#NO C#NO 38: smi match: OOO OOO 38: smi match: OO OO 38: smi match: O~Cl(~O)~O O~Cl(~O)~O 38: smi match: O~Cl(~O)(~O)~O O~Cl(~O)(~O)~O 38: smi match: [OH]~C(~O)~O [OH]~C(~O)~O 38: smi match: *N *N 38: smi match: *P *P 38: smi match: *S *S 38: smi match: *C(*)(*)C=C *C(*)(*)C=C 38: smi match: *C(*)(*)C=C *C(*)(*)C=C 38: smi match: *C(*)C=C *C(*)C=C 38: smi match: *CC=C *CC=C 38: smi match: CN=C=O CN=C=O 38: smi match: CN=C=S CN=C=S 38: smi match: *C=O *C=O 38: smi match: N=N N=N 38: smi match: SS SS 38: smi match: O=C1CCNC(=O)O1 O=C1CCNC(=O)O1 38: smi match: CSC(C)=N CSC(C)=N 38: smi match: COC(C)=N COC(C)=N 38: smi match: C=C=C C=C=C 38: smi match: *C(=O)OC=O *C(=O)OC=O 38: smi match: C=CC#N C=CC#N 38: smi match: C=CC=O C=CC=O 38: smi match: CC=CC(C)=O CC=CC(C)=O 38: smi match: CC=CC(=O)OCC CC=CC(=O)OCC 38: smi match: C#CC#N C#CC#N 38: smi match: C#CC=O C#CC=O 38: smi match: C#CC(=O)OCC C#CC(=O)OCC 38: smi match: C#CC=O C#CC=O 38: smi match: *C(=O)C#C *C(=O)C#C 38: smi match: C=CC=O C=CC=O 38: smi match: *C(*)(*)O *C(*)(*)O 38: smi match: COS(O)(=O)=O COS(O)(=O)=O 38: smi match: CS(=O)(=O)[O-] CS(=O)(=O)[O-] 38: smi match: NS(=O)(=O)[O-] NS(=O)(=O)[O-] 38: smi match: *C(*)(*)C=O *C(*)(*)C=O 38: smi match: *C(*)(*)C=O *C(*)(*)C=O 38: smi match: *C(*)C=O *C(*)C=O 38: smi match: *CC=O *CC=O 38: smi match: *C(*)(*)[SH](=O)=O *C(*)(*)[SH](=O)=O 38: smi match: *C(*)(*)[SH](=O)=O *C(*)(*)[SH](=O)=O 38: smi match: *C(*)[SH](=O)=O *C(*)[SH](=O)=O 38: smi match: *C[SH](=O)=O *C[SH](=O)=O 38: smi match: * * 38: smi match: *1CC1 *1CC1 38: smi match: O=COC=O O=COC=O 38: smi match: N=C=O N=C=O 38: smi match: N=C=S N=C=S 38: smi match: O~O O~O 38: smi match: N~[SiH4] N~[SiH4] 38: smi match: *P *P 38: smi match: C=N=N C=N=N 38: smi match: *N#[NH+] *N#[NH+] 38: smi match: *S* *S* 38: smi match: ** ** 38: smi match: *CC* *CC* 38: smi match: *O[SiH3] *O[SiH3] 38: smi match: *OS(*)~O *OS(*)~O 38: smi match: N~N~O N~N~O 38: smi match: *N(~O)(~O)~O *N(~O)(~O)~O 38: smi match: *[N+](=C)[O-] *[N+](=C)[O-] 38: smi match: * * 38: smi match: *C(*)NCN(*)* *C(*)NCN(*)* 38: smi match: *OCC#N *OCC#N 38: smi match: **C=C **C=C 38: smi match: C=C[O-] C=C[O-] 38: smi match: C=CO C=CO 38: smi match: * * 38: smi match: O=CON1C(=O)CCC1=O O=CON1C(=O)CCC1=O 38: smi match: O=COn1ccnc1 O=COn1ccnc1 38: smi match: O=COc1c(F)c(F)c(F)c(F)c1F O=COc1c(F)c(F)c(F)c(F)c1F 38: smi match: CC(C)(C)S CC(C)(C)S 38: smi match: [CH2][CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~C [CH2][CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~C 38: smi match: [CH]=O [CH]=O 38: smi match: C~[CH2]~[CH2]~[CH2]~[CH2]~[CH2]~C C~[CH2]~[CH2]~[CH2]~[CH2]~[CH2]~C 38: smi match: SS SS 38: smi match: [SH] [SH] 38: smi match: *C* *C* 38: smi match: * * 38: smi match: C[nH3+] C[nH3+] 38: smi match: cC(=N)[NH2] cC(=N)[NH2] 38: smi match: O=CN[OH] O=CN[OH] 38: smi match: NN NN 38: smi match: * * 38: smi match: *OP(=O)O* *OP(=O)O* 38: smi match: * * 38: smi match: * * 38: smi match: * * 38: smi match: *N=C(*)* *N=C(*)* 38: smi match: *C(*)(*)C=O *C(*)(*)C=O 38: smi match: CSC=O CSC=O 38: smi match: * * 38: smi match: O=CCl O=CCl 38: smi match: *** *** 38: smi match: *C=O *C=O 38: smi match: C[OH] C[OH] 38: smi match: C[OH] C[OH] 38: smi match: C[OH] C[OH] 38: smi match: C[OH] C[OH] 38: smi match: C[CH]=O C[CH]=O 38: smi match: *=* *=* 38: smi match: *C *C 38: smi match: C#C C#C 38: smi match: *[CH]C=C *[CH]C=C 38: smi match: cCC(=O)[OH] cCC(=O)[OH] 38: smi match: *C(*)(*)C(=O)[OH] *C(*)(*)C(=O)[OH] 38: smi match: CC(=O)C(=O)[OH] CC(=O)C(=O)[OH] 38: smi match: C=CC(=O)[OH] C=CC(=O)[OH] 38: smi match: N#CC(=O)[OH] N#CC(=O)[OH] 38: smi match: O=C([OH])CN(~O)~O O=C([OH])CN(~O)~O 38: smi match: *N(*)C*=O *N(*)C*=O 38: smi match: O=*C[OH] O=*C[OH] 38: smi match: *=C*=O *=C*=O 38: smi match: *=CC#N *=CC#N 38: smi match: *C[OH] *C[OH] 38: smi match: ** ** 38: smi match: *C[OH] *C[OH] 38: smi match: *C(*)=O *C(*)=O 38: smi match: * * 38: smi match: *CC(=O)[OH] *CC(=O)[OH] 38: smi match: CC(=O)OC(C)=O CC(=O)OC(C)=O 38: smi match: *c *c 38: smi match: CN(C)c CN(C)c 38: smi match: c c 38: smi match: *c *c 38: smi match: *c *c 38: smi match: **:*cF **:*cF 38: smi match: cB([OH])[OH] cB([OH])[OH] 38: smi match: N~N~N N~N~N 38: smi match: *N=N* *N=N* 38: smi match: *CC[OH] *CC[OH] 38: smi match: *CC[OH] *CC[OH] 38: smi match: *=CCC(=O)[OH] *=CCC(=O)[OH] 38: smi match: O=C([OH])CC[OH] O=C([OH])CC[OH] 38: smi match: *CCC(=O)[OH] *CCC(=O)[OH] 38: smi match: CC(=O)CC(=O)[OH] CC(=O)CC(=O)[OH] 38: smi match: *OC(=O)CC(C)=O *OC(=O)CC(C)=O 41: [04:01:29] sorting (hanoi sort) vectors 38: smi match: *OC(*)=O *OC(*)=O 38: smi match: *C(=O)[OH] *C(=O)[OH] 38: smi match: O=C[OH] O=C[OH] 38: smi match: *OC(=O)O* *OC(=O)O* 38: smi match: * * 38: smi match: *OC(=O)Cl *OC(=O)Cl 38: smi match: *C#N *C#N 38: smi match: NCC(=O)NCC=O NCC(=O)NCC=O 38: smi match: SS SS 38: smi match: * * 38: smi match: *=* *=* 38: smi match: *=* *=* 38: smi match: *=* *=* 38: smi match: *=* *=* 38: smi match: C1CO1 C1CO1 38: smi match: *OC(*)=O *OC(*)=O 38: smi match: * * 38: smi match: *O*[OH] *O*[OH] 38: smi match: COC(C)(C)O COC(C)(C)O 38: smi match: *[OH] *[OH] 38: smi match: ** ** 38: smi match: C=N[NH2] C=N[NH2] 38: smi match: C=NC=O C=NC=O 38: smi match: * * 38: smi match: C#NC C#NC 38: smi match: CN=C=O CN=C=O 38: smi match: CN=C=S CN=C=S 38: smi match: *OC(*)(*)O* *OC(*)(*)O* 38: smi match: *C(*)=O *C(*)=O 38: smi match: C~C~C~C~C~C~C C~C~C~C~C~C~C 38: smi match: *~*=O *~*=O 38: smi match: *~*=O *~*=O 38: smi match: OC(=O)CC(=O)[OH] OC(=O)CC(=O)[OH] 38: smi match: * * 38: smi match: *C#N *C#N 38: smi match: *N(=O)~O *N(=O)~O 38: smi match: N N 38: smi match: OC(=O)C(O)=O OC(=O)C(O)=O 38: smi match: C=NO C=NO 38: smi match: O~O O~O 38: smi match: c[OH] c[OH] 38: smi match: O=P(~[OH])~O O=P(~[OH])~O 38: smi match: CO~P(=O)~O CO~P(=O)~O 38: smi match: O=P(~[OH])(~O)~O O=P(~[OH])(~O)~O 38: smi match: CO~P(=O)(~O)~O CO~P(=O)(~O)~O 38: smi match: O=P(~O)~O O=P(~O)~O 38: smi match: O=P(~O)(~O)~O O=P(~O)(~O)~O 38: smi match: C[NH2] C[NH2] 38: smi match: O~*1~**~*(~O)~**~1 O~*1~**~*(~O)~**~1 38: smi match: * * 38: smi match: *1~*~*~C2~C(~*~1)~*~*~C1~C3~*~*~*~C~3~*~*~C~2~1 *1~*~*~C2~C(~*~1)~*~*~C1~C3~*~*~*~C~3~*~*~C~2~1 38: smi match: CS(C)~O CS(C)~O 38: smi match: CS(C)(~O)~O CS(C)(~O)~O 38: smi match: CS(N)(~O)~O CS(N)(~O)~O 38: smi match: CS([OH])(~O)~O CS([OH])(~O)~O 38: smi match: COS(C)(~O)~O COS(C)(~O)~O 38: smi match: *S(C)(~O)~O *S(C)(~O)~O 38: smi match: CN(C)C CN(C)C 38: smi match: *c1nnc(=N)s1 *c1nnc(=N)s1 38: smi match: *C(*)=S *C(*)=S 38: smi match: *OC(*)=S *OC(*)=S 38: smi match: * * 38: smi match: C[SH] C[SH] 38: smi match: c[SH] c[SH] 38: smi match: NC(N)=S NC(N)=S 38: smi match: * * 38: smi match: ***** ***** 38: smi match: NC(N)=O NC(N)=O 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing sf.net issue 280. 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing sf.net issue 285. 38: [04:01:29] done 38: [04:01:29] done 38: [04:01:29] done 38: [04:01:29] done 38: [04:01:29] done 38: [04:01:29] done 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing Github2441: Add RDProps interface to Conformers. 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing Issue2510: Pickle Confs as double. 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing Github #2465: Negative atom-map numbers cause depickling to fail. 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing loading pickled mols with conformers 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing conformer reading/writing options 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing property reading options 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing property reading options 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing boost::serialization integration 38: [04:01:29] done 38: [04:01:29] ------------------------------------- 38: [04:01:29] Testing github issue 6036 34/246 Test #38: graphmoltestPickler .................... Passed 0.31 sec test 42 Start 42: graphmolMemTest1 42: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolMemTest1 42: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 42: Test timeout computed to be: 7200 35/246 Test #42: graphmolMemTest1 ....................... Passed 0.02 sec test 43 Start 43: resMolSupplierTest 43: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/resMolSupplierTest 43: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 43: Test timeout computed to be: 7200 30: ......[04:01:29] Molecule does not have explicit Hs. Consider calling AddHs() 30: ... 30: ---------------------------------------------------------------------- 30: Ran 12 tests in 0.394s 30: 30: OK 36: [04:01:29] Maximum BFS search size exceeded. 36: This is likely due to a highly symmetric fused ring system. 36/246 Test #30: pyForceFieldConstraints ................ Passed 0.85 sec test 44 Start 44: molBundleTest 44: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/molBundleTest 44: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 44: Test timeout computed to be: 7200 37/246 Test #44: molBundleTest .......................... Passed 0.03 sec test 45 Start 45: testSGroup 45: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/testSGroup 45: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 45: Test timeout computed to be: 7200 38/246 Test #45: testSGroup ............................. Passed 0.04 sec test 46 Start 46: test-valgrind 46: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/test-valgrind 46: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 46: Test timeout computed to be: 7200 39/246 Test #46: test-valgrind .......................... Passed 0.02 sec test 47 Start 47: graphmolTestsCatch 47: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 47: Test timeout computed to be: 7200 47: Randomness seeded to: 4286972298 47: [04:01:29] WARNING: not removing hydrogen atom without neighbors 47: [04:01:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 47: [04:01:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 47: [04:01:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 47: [04:01:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 47: [04:01:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 47: [04:01:29] Explicit valence for atom # 1 N, 5, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 N, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 N, 5, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 N, 5, is greater than permitted 47: [04:01:29] Explicit valence for atom # 2 O, 3, is greater than permitted 47: [04:01:29] Explicit valence for atom # 2 O, 3, is greater than permitted 47: [04:01:29] non-ring atom 2 marked aromatic 47: [04:01:29] non-ring atom 2 marked aromatic 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 1 2 3 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 1 2 3 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 0 1 2 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 0 1 2 47: [04:01:29] Explicit valence for atom # 1 O, 3, is greater than permitted 47: [04:01:29] Explicit valence for atom # 4 F, 2, is greater than permitted 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 6 7 8 47: [04:01:29] Explicit valence for atom # 1 C, 5, is greater than permitted 47: [04:01:29] WARNING: not removing hydrogen atom with dummy atom neighbors 47: [04:01:29] WARNING: not removing hydrogen atom with dummy atom neighbors 47: [04:01:29] WARNING: not removing hydrogen atom with wedged bond 47: [04:01:29] WARNING: not removing hydrogen atom without neighbors 47: [04:01:29] WARNING: not removing hydrogen atom without neighbors 47: [04:01:29] WARNING: not removing hydrogen atom without neighbors 47: [04:01:29] WARNING: not removing hydrogen atom without neighbors 47: [04:01:29] Unreasonable formal charge on atom # 0. 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: no atom 47: Violation occurred on line 181 in file ./Code/GraphMol/ROMol.cpp 47: Failed Expression: at 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::getAtomDegree(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35E950 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: no owner 47: Violation occurred on line 153 in file ./Code/GraphMol/Atom.h 47: Failed Expression: dp_mol 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::getAtomDegree(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35E9F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: atom not associated with this molecule 47: Violation occurred on line 182 in file ./Code/GraphMol/ROMol.cpp 47: Failed Expression: &at->getOwningMol() == this 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::getAtomDegree(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35EAA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: no atom 47: Violation occurred on line 364 in file ./Code/GraphMol/ROMol.cpp 47: Failed Expression: at 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::getAtomNeighbors(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35EBA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: no owner 47: Violation occurred on line 153 in file ./Code/GraphMol/Atom.h 47: Failed Expression: dp_mol 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::getAtomNeighbors(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35EC44 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: atom not associated with this molecule 47: Violation occurred on line 365 in file ./Code/GraphMol/ROMol.cpp 47: Failed Expression: &at->getOwningMol() == this 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::getAtomNeighbors(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35ECF8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: no atom 47: Violation occurred on line 371 in file ./Code/GraphMol/ROMol.cpp 47: Failed Expression: at 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::getAtomBonds(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35F570 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: no owner 47: Violation occurred on line 153 in file ./Code/GraphMol/Atom.h 47: Failed Expression: dp_mol 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::getAtomBonds(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35EE88 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: atom not associated with this molecule 47: Violation occurred on line 372 in file ./Code/GraphMol/ROMol.cpp 47: Failed Expression: &at->getOwningMol() == this 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::getAtomBonds(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35EF3C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: null atom passed in 47: Violation occurred on line 386 in file ./Code/GraphMol/ROMol.cpp 47: Failed Expression: atom_pin 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::addAtom(RDKit::Atom*, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35F544 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: cannot take ownership of an atom which already has an owner 47: Violation occurred on line 387 in file ./Code/GraphMol/ROMol.cpp 47: Failed Expression: !takeOwnership || !atom_pin->hasOwningMol() || &atom_pin->getOwningMol() == this 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::addAtom(RDKit::Atom*, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35F108 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: cannot take ownership of an bond which already has an owner 47: Violation occurred on line 412 in file ./Code/GraphMol/ROMol.cpp 47: Failed Expression: !takeOwnership || !bond_pin->hasOwningMol() || &bond_pin->getOwningMol() == this 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::ROMol::addBond(RDKit::Bond*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A35F518 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 47: [04:01:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 47: [04:01:29] WARNING: not removing hydrogen atom without neighbors 47: [04:01:29] Explicit valence for atom # 1 F greater than permitted 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: plain atoms have no Query 47: Violation occurred on line 697 in file ./Code/GraphMol/Atom.cpp 47: Failed Expression: 0 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::Atom::setQuery(Queries::Query*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A304308 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: plain atoms have no Query 47: Violation occurred on line 702 in file ./Code/GraphMol/Atom.cpp 47: Failed Expression: 0 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::Atom::expandQuery(Queries::Query*, Queries::CompositeQueryType, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A3043C4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: plain bonds have no Query 47: Violation occurred on line 209 in file ./Code/GraphMol/Bond.cpp 47: Failed Expression: 0 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::Bond::setQuery(Queries::Query*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A303E7C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] 47: 47: **** 47: Pre-condition Violation 47: plain bonds have no query 47: Violation occurred on line 230 in file ./Code/GraphMol/Bond.cpp 47: Failed Expression: 0 47: ---------- 47: Stacktrace: 47: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 47: 2# RDKit::Bond::expandQuery(Queries::Query*, Queries::CompositeQueryType, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 47: 3# 0x000000010A303F38 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 4# 0x000000010A3CF6B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 5# 0x000000010A3C25F0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 6# 0x000000010A3C3344 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 7# 0x000000010A3C3990 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 8# 0x000000010A38A738 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 9# 0x000000010A38AD50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 10# 0x000000010A2EF83C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolTestsCatch 47: 11# 0x00007FFF89427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: 12# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 47: ---------- 47: **** 47: 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 6 7 8 9 10 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 6 7 8 9 10 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 47: [04:01:29] Unusual charge on atom 0 number of radical electrons set to zero 47: [04:01:29] Unusual charge on atom 0 number of radical electrons set to zero 47: [04:01:29] Unusual charge on atom 0 number of radical electrons set to zero 47: [04:01:29] non-ring atom 0 marked aromatic 47: [04:01:29] non-ring atom 0 marked aromatic 47: [04:01:29] Explicit valence for atom # 1 C, 5, is greater than permitted 47: [04:01:29] Explicit valence for atom # 9 C, 5, is greater than permitted 47: [04:01:29] Explicit valence for atom # 3 N, 4, is greater than permitted 47: [04:01:29] Explicit valence for atom # 15 C, 5, is greater than permitted 47: [04:01:29] Explicit valence for atom # 11 C, 5, is greater than permitted 47: [04:01:29] Explicit valence for atom # 9 C, 5, is greater than permitted 47: [04:01:29] Explicit valence for atom # 9 C, 5, is greater than permitted 47: [04:01:29] Explicit valence for atom # 9 C, 6, is greater than permitted 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 7 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 3 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 3 7 47: [04:01:29] Can't kekulize mol. Unkekulized atoms: 3 7 47: [04:01:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 47: [04:01:29] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 47: [04:01:29] Explicit valence for atom # 1 O, 3, is greater than permitted 47: [04:01:29] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged 47: [04:01:29] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged 47: [04:01:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 47: [04:01:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 47: [04:01:29] Invalid value for molAttachPoint: 4 on atom 1. Not expanding this atttachment point. 47: [04:01:29] Invalid value for _fromAttachPoint: -1 on atom 0. Not collapsing this atom 47: [04:01:29] Invalid value for _fromAttachPoint: 4 on atom 0. Not collapsing this atom 47: [04:01:29] non-ring atom 0 marked aromatic 47: [04:01:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 47: [04:01:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 47: [04:01:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 47: [04:01:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 47: [04:01:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 47: [04:01:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 47: [04:01:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 47: [04:01:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 47: [04:01:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 47: [04:01:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 47: [04:01:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 47: [04:01:29] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 47: [04:01:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 36: [04:01:29] Maximum BFS search size exceeded. 36: This is likely due to a highly symmetric fused ring system. 47: [04:01:29] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 47: [04:01:29] Explicit valence for atom # 0 Al, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 0 Al, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 Si, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 Si, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 0 P, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 0 P, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 0 P, 7, is greater than permitted 47: [04:01:29] Explicit valence for atom # 0 P, 7, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 As, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 As, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 As, 7, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 As, 7, is greater than permitted 47: [04:01:29] Explicit valence for atom # 0 Sb, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 0 Sb, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 0 Sb, 7, is greater than permitted 47: [04:01:29] Explicit valence for atom # 0 Sb, 7, is greater than permitted 36: F/C=C/Cl 47: [04:01:29] Explicit valence for atom # 1 Bi, 6, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 Bi, 6, is greater than permitted 36: [H]/C(F)=C(/[H])Cl 47: [04:01:29] Explicit valence for atom # 1 Bi, 8, is greater than permitted 47: [04:01:29] Explicit valence for atom # 1 Bi, 8, is greater than permitted 36: F/C=C/Cl 36: F/C=C/Cl 36: C/C(F)=C(/C)Cl 47: =============================================================================== 47: All tests passed (4501 assertions in 110 test cases) 47: 40/246 Test #47: graphmolTestsCatch ..................... Passed 0.31 sec test 48 Start 48: graphmolOrganometallicsCatch 48: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolOrganometallicsCatch 48: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 48: Test timeout computed to be: 7200 36: [04:01:29] ----------------------- 36: Testing isRingFused 41/246 Test #36: graphmolMolOpsTest ..................... Passed 1.08 sec test 49 Start 49: graphmolSGroupCatch 49: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolSGroupCatch 49: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 49: Test timeout computed to be: 7200 49: Randomness seeded to: 2130685828 49: =============================================================================== 49: All tests passed (136 assertions in 8 test cases) 49: 42/246 Test #49: graphmolSGroupCatch .................... Passed 0.04 sec test 50 Start 50: graphmolAdjustQueryCatch 50: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/graphmolAdjustQueryCatch 50: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 50: Test timeout computed to be: 7200 48: Randomness seeded to: 3550059014 48: =============================================================================== 48: All tests passed (62 assertions in 6 test cases) 48: 43/246 Test #48: graphmolOrganometallicsCatch ........... Passed 0.08 sec test 51 Start 51: chiralityTestsCatch 51: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/chiralityTestsCatch 51: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 51: Test timeout computed to be: 7200 50: Randomness seeded to: 2337687079 50: =============================================================================== 50: All tests passed (332 assertions in 12 test cases) 50: 44/246 Test #50: graphmolAdjustQueryCatch ............... Passed 0.07 sec test 52 Start 52: canonTestsCatch 52: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/canonTestsCatch 52: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 52: Test timeout computed to be: 7200 51: Randomness seeded to: 2725838451 51: [04:01:29] unable to set wavy bonds for double bonds: 3 51: [04:01:29] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry 51: [04:01:29] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry 51: [04:01:29] Warning: ambiguous stereochemistry - zero-length (or near zero-length) bond - at atom 1 ignored. 51: [04:01:29] Warning: ambiguous stereochemistry - zero-length (or near zero-length) bond - at atom 1 ignored. 51: [04:01:29] Warning: ambiguous stereochemistry - overlapping neighbors - at atom 2 ignored 51: =============================================================================== 51: All tests passed (2350 assertions in 81 test cases) 51: 45/246 Test #51: chiralityTestsCatch .................... Passed 0.13 sec test 53 Start 53: moliteratorTestsCatch 53: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/moliteratorTestsCatch 53: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 53: Test timeout computed to be: 7200 53: Randomness seeded to: 2889490949 53: =============================================================================== 53: All tests passed (14 assertions in 4 test cases) 53: 46/246 Test #53: moliteratorTestsCatch .................. Passed 0.04 sec test 54 Start 54: queryTestsCatch 54: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/queryTestsCatch 54: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 54: Test timeout computed to be: 7200 54: Randomness seeded to: 1184117271 54: =============================================================================== 54: All tests passed (10 assertions in 1 test case) 54: 47/246 Test #54: queryTestsCatch ........................ Passed 0.04 sec test 55 Start 55: molbundleTestsCatch 55: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/molbundleTestsCatch 55: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 55: Test timeout computed to be: 7200 55: Randomness seeded to: 428702834 55: =============================================================================== 55: All tests passed (6 assertions in 1 test case) 55: 48/246 Test #55: molbundleTestsCatch .................... Passed 0.04 sec test 56 Start 56: pickleTestsCatch 56: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/pickleTestsCatch 56: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 56: Test timeout computed to be: 7200 56: Randomness seeded to: 2422110922 56: =============================================================================== 56: All tests passed (45 assertions in 4 test cases) 56: 49/246 Test #56: pickleTestsCatch ....................... Passed 0.05 sec test 57 Start 57: tableTestsCatch 57: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/tableTestsCatch 57: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 57: Test timeout computed to be: 7200 57: Randomness seeded to: 3291287005 57: =============================================================================== 57: All tests passed (7 assertions in 2 test cases) 57: 50/246 Test #57: tableTestsCatch ........................ Passed 0.03 sec test 58 Start 58: molopsTestsCatch 58: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/molopsTestsCatch 58: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol 58: Test timeout computed to be: 7200 58: Randomness seeded to: 2738140624 58: =============================================================================== 58: All tests passed (230 assertions in 7 test cases) 58: 51/246 Test #58: molopsTestsCatch ....................... Passed 0.04 sec test 59 Start 59: smiTest1 59: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTest1 59: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse 59: Test timeout computed to be: 7200 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] WARNING: not removing hydrogen atom without neighbors 59: [04:01:30] Invalid chiral specification on atom 0 59: [04:01:30] Invalid chiral specification on atom 0 59: [04:01:30] Invalid chiral specification on atom 0 59: [04:01:30] Invalid chiral specification on atom 0 59: [04:01:30] Invalid chiral specification on atom 0 59: [04:01:30] SMILES Parse Error: unclosed ring for input: 'C1.C11.C' 59: [04:01:30] SMILES Parse Error: unclosed ring for input: 'C1C.CC11CCC' 59: --C1CCC2(CC1)CCCCC2CCC1CCCC1 59: smi: ClC1CCCCC1 59: smi: ClC1CCCCC1 59: smi: ClC1CCCCC1Br 59: smi: c1ccccc1 59: smi: c1ccncc1 59: smi: c1cc[nH]c1 59: smi: c1cc[nH]c1 59: smi: c1cc[pH]c1 59: [04:01:30] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 59: [04:01:30] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 59: CbC(aC)aC 59: CaC(bC)aC 59: CbC(bC)aC 59: O.C 59: C=C1CC[C@@H]2O[C@@]2(C)CC[C@@](N)(C(C)C)C=C[C@](C)(O)CC[C@@H]1O C=C1CC[C@@H]2O[C@@]2(C)CC[C@@](N)(C(C)C)C=C[C@](C)(O)CC[C@@H]1O 59: [04:01:30] SMILES Parse Error: syntax error while parsing: c%()ccccc%() 59: [04:01:30] SMILES Parse Error: check for mistakes around position 4: 59: [04:01:30] c%()ccccc%() 59: [04:01:30] ~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'c%()ccccc%()' for input: 'c%()ccccc%()' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: c%(100000)ccccc%(100000) 59: [04:01:30] SMILES Parse Error: check for mistakes around position 9: 59: [04:01:30] c%(100000)ccccc%(100000) 59: [04:01:30] ~~~~~~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'c%(100000)ccccc%(100000)' for input: 'c%(100000)ccccc%(100000)' 59: [04:01:30] SMILES Parse Error: duplicated ring closure 1 bonds atom 2 to itself for input: 'C1CC111' 59: [04:01:30] SMILES Parse Error: ring closure 1 duplicates bond between atom 0 and atom 1 for input: 'C1C1' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: COc(c1)cccc1C# 59: [04:01:30] SMILES Parse Error: check for mistakes around position 14: 59: [04:01:30] COc(c1)cccc1C# 59: [04:01:30] ~~~~~~~~~~~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: COc(c1)cccc1C# 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 14: 59: [04:01:30] COc(c1)cccc1C# 59: [04:01:30] ~~~~~~~~~~~~~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: COc(c1)cccc1C# 59: [04:01:30] SMILES Parse Error: check for mistakes around position 14: 59: [04:01:30] COc(c1)cccc1C# 59: [04:01:30] ~~~~~~~~~~~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: COc(c1)cccc1C# 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 14: 59: [04:01:30] COc(c1)cccc1C# 59: [04:01:30] ~~~~~~~~~~~~~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: COc(c1)cccc1C# 59: [04:01:30] SMILES Parse Error: check for mistakes around position 14: 59: [04:01:30] COc(c1)cccc1C# 59: [04:01:30] ~~~~~~~~~~~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: COc(c1)cccc1C# 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 14: 59: [04:01:30] COc(c1)cccc1C# 59: [04:01:30] ~~~~~~~~~~~~~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#' 59: C=c1s/c2n(c1=O)CCCCCCC\N=2 59: C1=C\C/C=C2C3=C\C/C=C\C=C/C/3C\2\C=C/1 59: [04:01:30] SMILES Parse Error: extra close parentheses while parsing: C) 59: [04:01:30] SMILES Parse Error: check for mistakes around position 2: 59: [04:01:30] C) 59: [04:01:30] ~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'C)' for input: 'C)' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: CC=(CO)C 59: [04:01:30] SMILES Parse Error: check for mistakes around position 4: 59: [04:01:30] CC=(CO)C 59: [04:01:30] ~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'CC=(CO)C' for input: 'CC=(CO)C' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: CC=(CO)C 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 4: 59: [04:01:30] CC=(CO)C 59: [04:01:30] ~~~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'CC=(CO)C' for input: 'CC=(CO)C' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: baz 59: [04:01:30] SMILES Parse Error: check for mistakes around position 2: 59: [04:01:30] baz 59: [04:01:30] ~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'baz' for input: 'baz' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: baz 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 3: 59: [04:01:30] baz 59: [04:01:30] ~~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'baz' for input: 'baz' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: fff 59: [04:01:30] SMILES Parse Error: check for mistakes around position 1: 59: [04:01:30] fff 59: [04:01:30] ^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'fff' for input: 'fff' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: fff 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 1: 59: [04:01:30] fff 59: [04:01:30] ^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'fff' for input: 'fff' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: C+0 59: [04:01:30] SMILES Parse Error: check for mistakes around position 2: 59: [04:01:30] C+0 59: [04:01:30] ~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'C+0' for input: 'C+0' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: C+0 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 2: 59: [04:01:30] C+0 59: [04:01:30] ~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'C+0' for input: 'C+0' 59: [04:01:30] SMILES Parse Error: number too large while parsing: [555555555555555555C] 59: [04:01:30] SMILES Parse Error: check for mistakes around position 11: 59: [04:01:30] [555555555555555555C] 59: [04:01:30] ~~~~~~~~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES '[555555555555555555C]' for input: '[555555555555555555C]' 59: [04:01:30] SMARTS Parse Error: number too large while parsing: [555555555555555555C] 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 11: 59: [04:01:30] [555555555555555555C] 59: [04:01:30] ~~~~~~~~~~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS '[555555555555555555C]' for input: '[555555555555555555C]' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: [Fe@TD] 59: [04:01:30] SMILES Parse Error: check for mistakes around position 5: 59: [04:01:30] [Fe@TD] 59: [04:01:30] ~~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES '[Fe@TD]' for input: '[Fe@TD]' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: [Fe@TD] 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 5: 59: [04:01:30] [Fe@TD] 59: [04:01:30] ~~~~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS '[Fe@TD]' for input: '[Fe@TD]' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: c%()ccccc%() 59: [04:01:30] SMILES Parse Error: check for mistakes around position 4: 59: [04:01:30] c%()ccccc%() 59: [04:01:30] ~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'c%()ccccc%()' for input: 'c%()ccccc%()' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: c%()ccccc%() 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 4: 59: [04:01:30] c%()ccccc%() 59: [04:01:30] ~~~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'c%()ccccc%()' for input: 'c%()ccccc%()' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: c%(100000)ccccc%(100000) 59: [04:01:30] SMILES Parse Error: check for mistakes around position 9: 59: [04:01:30] c%(100000)ccccc%(100000) 59: [04:01:30] ~~~~~~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'c%(100000)ccccc%(100000)' for input: 'c%(100000)ccccc%(100000)' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: c%(100000)ccccc%(100000) 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 9: 59: [04:01:30] c%(100000)ccccc%(100000) 59: [04:01:30] ~~~~~~~~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'c%(100000)ccccc%(100000)' for input: 'c%(100000)ccccc%(100000)' 59: [04:01:30] SMILES Parse Error: syntax error while parsing: COc(c1)cccc1C# 59: [04:01:30] SMILES Parse Error: check for mistakes around position 14: 59: [04:01:30] COc(c1)cccc1C# 59: [04:01:30] ~~~~~~~~~~~~~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: COc(c1)cccc1C# 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 14: 59: [04:01:30] COc(c1)cccc1C# 59: [04:01:30] ~~~~~~~~~~~~~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'COc(c1)cccc1C#' for input: 'COc(c1)cccc1C#' 59: [04:01:30] SMILES Parse Error: extra close parentheses while parsing: C) 59: [04:01:30] SMILES Parse Error: check for mistakes around position 2: 59: [04:01:30] C) 59: [04:01:30] ~^ 59: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'C)' for input: 'C)' 59: [04:01:30] SMARTS Parse Error: syntax error while parsing: C) 59: [04:01:30] SMARTS Parse Error: check for mistakes around position 2: 59: [04:01:30] C) 59: [04:01:30] ~^ 59: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'C)' for input: 'C)' 52/246 Test #59: smiTest1 ............................... Passed 0.35 sec test 60 Start 60: smiTest2 60: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTest2 60: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse 60: Test timeout computed to be: 7200 60: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'CO' for input: 'CO' 60: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'C-O' for input: 'C-O' 60: [04:01:30] SMILES Parse Error: syntax error while parsing: - 60: [04:01:30] SMILES Parse Error: check for mistakes around position 1: 60: [04:01:30] - 60: [04:01:30] ^ 60: [04:01:30] SMILES Parse Error: Failed parsing SMILES '-' for input: '-' 60: [04:01:30] SMILES Parse Error: Failed parsing SMILES '[Bg]' for input: '[Bg]' 60: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'C' for input: 'C' 60: [04:01:30] SMILES Parse Error: Failed parsing SMILES 'C-O' for input: 'C-O' 60: [04:01:30] SMILES Parse Error: Failed parsing SMILES '*' for input: '*' 60: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'CO' for input: 'CO' 60: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'C-O' for input: 'C-O' 60: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS '-' for input: '-' 60: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS '[Bg]' for input: '[Bg]' 60: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS 'C' for input: 'C' 60: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS '-O' for input: '-O' 60: [04:01:30] SMARTS Parse Error: Failed parsing SMARTS '*' for input: '*' 53/246 Test #60: smiTest2 ............................... Passed 0.01 sec test 61 Start 61: cxsmilesTest 61: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/cxsmilesTest 61: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse 61: Test timeout computed to be: 7200 29: Checking against /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/test_data/MMFF94_reference.log... 61: Randomness seeded to: 1768971786 61: Test 61: 61: ShortAtropisomerNoCoords.cxsmi 61: 61: Test 61: 61: ShortAtropisomer.cxsmi 61: 61: Test 61: 61: ShortAtropisomerArom.cxsmi 61: 61: Test 61: 61: AtropManyChirals.cxsmi 61: 61: Test 61: 61: AtropManyChiralsEnhanced.cxsmi 61: 61: Test 61: 61: AtropManyChiralsEnhanced2.cxsmi 61: 61: Test 61: 61: AtropManyChiralsEnhanced3.cxsmi 61: 61: Test 61: 61: AtropManyChiralsEnhanced4.cxsmi 61: 61: Test 61: 61: BMS-986142_3d_chiral.cxsmi 61: 61: Test 61: 61: BMS-986142_3d.cxsmi 61: 61: Test 61: 61: BMS-986142_atrop1.cxsmi 61: 61: Test 61: 61: BMS-986142_atrop2.cxsmi 61: 61: Test 61: 61: BMS-986142_atrop3.cxsmi 61: 61: Test 61: 61: BMS-986142_atrop4.cxsmi 61: 61: Test 61: 61: BMS-986142_atrop5.cxsmi 61: 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: Test 61: 61: BMS-986142_atrop6.cxsmi 61: 61: Test 61: 61: BMS-986142_atropBad1.cxsmi 61: 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 6 7 61: Test 61: 61: BMS-986142_atropBad2.cxsmi 61: 61: [04:01:30] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7 61: [04:01:30] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7 61: [04:01:30] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7 61: [04:01:30] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7 61: [04:01:30] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 6 7 29: All 191 tests passed 41: [04:01:30] done: 500000 41: [04:01:30] Done 41: [04:01:30] Testing hanoi with a functor. 61: Test 61: 61: JDQ443_3d.cxsmi 61: 61: Test 61: 61: JDQ443_atrop1.cxsmi 61: 61: Test 61: 61: JDQ443_atrop2.cxsmi 61: 61: Test 61: 61: JDQ443_atrop3.cxsmi 61: 61: Test 61: 61: JDQ443_atrop4.cxsmi 61: 61: Test 61: 61: JDQ443_atropBad1.cxsmi 61: 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3 41: [04:01:30] Done 41: [04:01:30] Testing basic partition refinement. 41: [04:01:30] Done 41: [04:01:30] Testing partition refinement with neighbors. 41: [04:01:30] Done 41: [04:01:30] testing canonicalization via tie breaking. 41: [04:01:30] Done 41: [04:01:30] testing canonicalization using the wrapper. 41: [04:01:30] Done 41: [04:01:30] testing some specific ordering problems 41: [04:01:30] Finished 41: [04:01:30] testing chiral invariants. 41: [04:01:30] Finished 41: [04:01:30] testing unique ranks in w.r.t. renumbering. 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 3 61: Test 61: 61: RP-6306_atrop1.cxsmi 61: 61: Test 61: 61: RP-6306_atrop2.cxsmi 61: 61: Test 61: 61: RP-6306_atrop3.cxsmi 61: 61: Test 61: 61: RP-6306_atrop4.cxsmi 61: 61: Test 61: 61: RP-6306_atrop5.cxsmi 61: 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 41: [04:01:30] Finished 41: [04:01:30] testing mol fragments. 61: Test 61: 61: RP-6306_atrop6.cxsmi 61: 61: Test 61: 61: RP-6306_atropBad1.cxsmi 61: 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5 41: [04:01:30] Finished 41: [04:01:30] testing protein round-tripping. 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 4 5 29: 29: Computing MMFF94 energies for /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.sdf... 61: Test 61: 61: RP-6306_atropBad2.cxsmi 61: 61: [04:01:30] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5 61: [04:01:30] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5 61: [04:01:30] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5 61: [04:01:30] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5 61: [04:01:30] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 4 5 61: Test 61: 61: RP-6306_3d.cxsmi 61: 61: Test 61: 61: Sotorasib_atrop1.cxsmi 61: 61: Test 61: 61: Sotorasib_atrop2.cxsmi 61: 61: Test 61: 61: Sotorasib_atrop3.cxsmi 61: 61: Test 61: 61: Sotorasib_atrop4.cxsmi 61: 61: Test 61: 61: Sotorasib_atrop5.cxsmi 61: 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored 61: [04:01:30] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 13 ignored 61: Test 61: 61: Sotorasib_atropBad1.cxsmi 61: 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14 61: [04:01:30] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 13 14 61: Test 61: 61: Sotorasib_atropBad2.cxsmi 61: 61: [04:01:31] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14 61: [04:01:31] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14 61: [04:01:31] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14 61: [04:01:31] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14 61: [04:01:31] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 13 14 61: Test 61: 61: Sotorasib_3d.cxsmi 61: 61: Test 61: 61: ZM374979_atrop1.cxsmi 61: 61: Test 61: 61: ZM374979_atrop2.cxsmi 61: 61: Test 61: 61: ZM374979_atrop3.cxsmi 61: 61: Test 61: 61: ZM374979_atrop4.cxsmi 61: 61: Test 61: 61: ZM374979_atropBad1.cxsmi 61: 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31 61: Test 61: 61: Mrtx1719_3d.cxsmi 61: 61: Test 61: 61: Mrtx1719_atrop1.cxsmi 61: 61: Test 61: 61: Mrtx1719_atrop2.cxsmi 61: 61: Test 61: 61: Mrtx1719_atrop3.cxsmi 61: 61: Test 61: 61: Mrtx1719_atrop4.cxsmi 61: 61: Test 61: 61: Mrtx1719_atropBad1.cxsmi 61: 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12 61: [04:01:31] The 2 defining bonds for an atropisomer are co-planar - atoms are: 11 12 41: [04:01:31] Finished 41: [04:01:31] testing stability w.r.t. renumbering. 41: [04:01:31] Finished 41: [04:01:31] testing smiles round-tripping. 41: [04:01:31] Finished 41: [04:01:31] testing github #1567: Non-canonical result from MolFragmentToSmiles() 41: [04:01:31] Finished 54/246 Test #41: hanoiTest .............................. Passed 2.49 sec test 62 Start 62: smaTest1 62: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smaTest1 62: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse 62: Test timeout computed to be: 7200 62: [04:01:31] SMARTS Parse Error: syntax error while parsing: [C:10H3]CC 62: [04:01:31] SMARTS Parse Error: check for mistakes around position 6: 62: [04:01:31] [C:10H3]CC 62: [04:01:31] ~~~~~^ 62: [04:01:31] SMARTS Parse Error: Failed parsing SMARTS '[C:10H3]CC' for input: '[C:10H3]CC' 62: [04:01:31] SMARTS Parse Error: syntax error while parsing: [C:10:3]ON 62: [04:01:31] SMARTS Parse Error: check for mistakes around position 6: 62: [04:01:31] [C:10:3]ON 62: [04:01:31] ~~~~~^ 62: [04:01:31] SMARTS Parse Error: Failed parsing SMARTS '[C:10:3]ON' for input: '[C:10:3]ON' 62: [04:01:31] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged 62: [04:01:31] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged 55/246 Test #62: smaTest1 ............................... Passed 0.25 sec test 63 Start 63: smiTestCatch 63: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTestCatch 63: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse 63: Test timeout computed to be: 7200 63: Randomness seeded to: 2268206895 63: [04:01:31] SMILES Parse Error: unclosed ring for input: 'c1ccccc' 63: [04:01:31] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 63: [04:01:31] SMARTS Parse Error: unclosed ring for input: 'c1ccccc' 63: [04:01:31] SMARTS Parse Error: unclosed ring for input: 'C1C' 63: [04:01:31] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 63: [04:01:31] SMARTS Parse Error: syntax error while parsing: C)foo 63: [04:01:31] SMARTS Parse Error: check for mistakes around position 2: 63: [04:01:31] C)foo 63: [04:01:31] ~^ 63: [04:01:31] SMARTS Parse Error: Failed parsing SMARTS 'C)foo' for input: 'C)foo' 63: [04:01:31] SMARTS Parse Error: syntax error while parsing: CCC |$foo;;bar$| 63: [04:01:31] SMARTS Parse Error: check for mistakes around position 4: 63: [04:01:31] CCC |$foo;;bar$| 63: [04:01:31] ~~~^ 63: [04:01:31] SMARTS Parse Error: Failed parsing SMARTS 'CCC |$foo;;bar$|' for input: 'CCC |$foo;;bar$|' 63: [04:01:31] unrecognized CXSMILES CONNECT value: 'EU'. Assuming 'eu' 63: [04:01:31] w block attempts to set wedging on bond 0 more than once. 63: [04:01:31] improperly formatted w block 63: [04:01:31] atom 3 is not associated with bond 1(1-2) in w block 61: Test 61: 61: AtropCanon1.cxsmi 61: 61: Test 61: 61: AtropCanon2.cxsmi 61: 61: Test 61: 61: AtropCanon3.cxsmi 61: 61: Test 61: 61: BMS-986142_3d_chiral.cxsmi 61: 61: Test 61: 61: BMS-986142_3d.cxsmi 61: 61: =============================================================================== 61: All tests passed (2500 assertions in 32 test cases) 61: 56/246 Test #61: cxsmilesTest ........................... Passed 1.67 sec test 64 Start 64: nontetrahedralCatch 64: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/nontetrahedralCatch 64: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse 64: Test timeout computed to be: 7200 64: Randomness seeded to: 193104299 64: [04:01:32] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry 64: [04:01:32] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry 64: [04:01:32] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry 64: [04:01:32] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry 64: [04:01:32] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry 64: [04:01:32] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry 64: [04:01:32] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry 64: [04:01:32] WARNING: not removing hydrogen atom with neighbor that has non-tetrahedral stereochemistry 64: [04:01:32] ignoring non-tetrahedral stereo specification since setAllowNontetrahedralChirality() is false. 64: =============================================================================== 64: All tests passed (308 assertions in 9 test cases) 64: 57/246 Test #64: nontetrahedralCatch .................... Passed 0.08 sec test 65 Start 65: v2smiTestCatch 65: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/v2smiTestCatch 65: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse 65: Test timeout computed to be: 7200 65: Randomness seeded to: 434725103 65: =============================================================================== 65: All tests passed (14 assertions in 2 test cases) 65: 58/246 Test #65: v2smiTestCatch ......................... Passed 0.03 sec test 66 Start 66: smartsTestCatch 66: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smartsTestCatch 66: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse 66: Test timeout computed to be: 7200 66: Randomness seeded to: 2416089740 66: =============================================================================== 66: All tests passed (5 assertions in 1 test case) 66: 59/246 Test #66: smartsTestCatch ........................ Passed 0.03 sec test 67 Start 67: testDepictor 67: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor/testDepictor 67: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor 67: Test timeout computed to be: 7200 67: [04:01:32] *********************************************************** 67: [04:01:32] test1 67: [04:01:32] *********************************************************** 67: 67: [04:01:32] *********************************************************** 67: [04:01:32] testCollisions 67: [04:01:32] *********************************************************** 67: 67: [04:01:32] *********************************************************** 67: [04:01:32] testAddHs 67: [04:01:32] *********************************************************** 67: 67: [04:01:32] *********************************************************** 67: [04:01:32] test198 67: [04:01:32] *********************************************************** 67: 67: [04:01:32] *********************************************************** 67: [04:01:32] test2 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] test3 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] test4 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] tempTest 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Issue248 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test Queries 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test crashes associated with RemoveHs 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test Issue 2091304 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test Issue 2821647 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test Issue 2948402 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test Issue 2995724 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Testing a change of the depictor bond length 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test Issue 3122141 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test Issue 3135833 67: [04:01:32] Warning: stereochemistry around double bond may be incorrect in depiction. 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test Issue 3487469 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test GitHub Issue 8 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test GitHub Issue 78 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test GitHub Issue 910 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test GitHub Issue 1073 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] testConstrainedCoords 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test GitHub Issue 1112: Bad coordinate generation for H2 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test Issue 2303566 67: [04:01:32] *********************************************************** 67: [04:01:32] *********************************************************** 67: [04:01:32] Test GitHub Issue 1286: GenerateDepictionMatching2DStructure isn't matching 2D structure 67: [04:01:32] *********************************************************** 67: [04:01:32] ----------------------- 67: Testing Github issue 1691: Acetylenic hydrogens not given appropriate 2D coordinates 67: [04:01:32] Finished 67: [04:01:32] ----------------------- 67: Testing Github issue 2027: "linear" fragments not canonically oriented 67: [04:01:32] Finished 67: [04:01:32] ----------------------- 67: Test generateDepictionMatching2DStructure with refPattern and matchVect 67: [04:01:32] Finished 67: [04:01:32] ----------------------- 67: Test generateDepictionMatching2DStructure with allowRGroups 67: [04:01:32] Finished 67: [04:01:32] ----------------------- 67: Test generateDepictionMatching2DStructure with allowRGroups 67: [04:01:32] Finished 67: [04:01:32] ----------------------- 67: Test normalize and straighten depiction 67: [04:01:32] Finished 67: [04:01:32] ----------------------- 67: Test that ring system templates are valid 67: [04:01:32] Finished 60/246 Test #67: testDepictor ........................... Passed 0.44 sec test 68 Start 68: depictorCatch 68: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor/depictorCatch 68: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor 68: Test timeout computed to be: 7200 68: Randomness seeded to: 3627037435 68: =============================================================================== 68: All tests passed (1015 assertions in 20 test cases) 68: 61/246 Test #68: depictorCatch .......................... Passed 0.20 sec test 69 Start 69: pyDepictor 69: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Depictor/Wrap/testDepictor.py" 69: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Depictor/Wrap 69: Test timeout computed to be: 7200 29: Checking against /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/test_data/MMFF94_reference.log... 29: All 191 tests passed 12: .................. 12: ---------------------------------------------------------------------- 12: Ran 18 tests in 5.034s 12: 12: OK 62/246 Test #12: pyBV ................................... Passed 5.49 sec test 70 Start 70: testMrvToMol 70: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse/testMrvToMol 70: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse 70: Test timeout computed to be: 7200 29: 29: Computing MMFF94 energies for /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/test_data/MMFF94_dative.smi... 70: Using new chirality perception 70: Test 70: 70: rxnStereoMarkedCrossed.mrv 70: 70: Test 70: 70: 145323811.mol 70: 70: [04:01:33] unsupported number of radical electrons 5 70: Test 70: 70: NewChiralTest.sdf 70: 70: Test 70: 70: NewChiralTest.sdf 70: 70: Test 70: 70: NewChiralTestNoChiral.sdf 70: 70: Test 70: 70: NewChiralTestNoChiral.sdf 70: 70: Test 70: 70: NewChiralTestAllChiral.sdf 70: 70: Test 70: 70: NewChiralTestAllChiral.sdf 70: 70: Test 70: 70: vendor839.sdf 70: 70: Test 70: 70: ProblemShort.mol 70: 70: [04:01:33] For a MultipleSgroup expansion, the matching orphaned bond was not found 70: The multiple sgroup will be ignored 69: ...............[04:01:33] SMILES Parse Error: syntax error while parsing: invalidsmiles 69: [04:01:33] SMILES Parse Error: check for mistakes around position 1: 69: [04:01:33] invalidsmiles 69: [04:01:33] ^ 69: [04:01:33] SMILES Parse Error: Failed parsing SMILES 'invalidsmiles' for input: 'invalidsmiles' 69: ..... 69: ---------------------------------------------------------------------- 69: Ran 20 tests in 0.385s 69: 69: OK 63/246 Test #69: pyDepictor ............................. Passed 0.76 sec test 71 Start 71: fileParsersTest1 71: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 71: Test timeout computed to be: 7200 71: *************************************** 71: *************************************** 71: [04:01:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 71: [04:01:33] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 71: [04:01:33] bond with order 0 found on line 7. This is not part of the MDL specification. 71: [04:01:33] Skipping unrecognized collection type at line 26: MDLV30/HILITE BONDS=(1 7) 71: [04:01:33] Skipping unrecognized collection type at line 27: MDLV30/HILITE ATOMS=(1 7) 71: [04:01:33] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D. 71: generating smiles 71: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2 71: converting back 71: check isomorphism 70: Test 70: 70: badWedgeError.sdf 70: 70: Test 70: 70: CrossedDoubleBondWithChiralNbr2.sdf 70: 70: Test 70: 70: CrossedDoubleBondWithChiralNbr.sdf 70: 70: Test 70: 70: SimpleWiggleDoubleBond.sdf 70: 70: Test 70: 70: lostStereoAnd.sdf 70: 70: Test 70: 70: DoubleBondChain.sdf 70: 70: Test 70: 70: UnitsError.sdf 70: 70: Test 70: 70: StarAtom.sdf 70: 70: Test 70: 70: nonProprietary.mol 70: 70: Test 70: 70: ChiralTest.sdf 70: 70: Test 70: 70: TestBond1.mol 70: 70: Test 70: 70: Sgroup_MUL_ParentInMiddle.sdf 70: 70: Test 70: 70: BadRxn.rxn 70: 70: Test 70: 70: FalseChiral.mrv 70: 70: Test 70: 70: FalseChiral.mrv 70: 70: Test 70: 70: Cubane.mrv 70: 70: Test 70: 70: NewChiralTest.mrv 70: 70: Test 70: 70: NewChiralTest.mrv 70: 70: Test 70: 70: NewChiralTestNoChiral.mrv 70: 70: Test 70: 70: NewChiralTestNoChiral.mrv 70: 70: Test 70: 70: NewChiralTestAllChiral.mrv 70: 70: Test 70: 70: NewChiralTestAllChiral.mrv 70: 70: Test 70: 70: DataSgroupMissingUnitsDisplayed.mrv 70: 70: Test 70: 70: lostStereoAnd.mrv 70: 70: Test 70: 70: DoubleBondChain.mrv 70: 70: Test 70: 70: WigglyAndCrossed.mrv 70: 70: Test 70: 70: BondTypes.mrv 70: 70: Test 70: 70: EmbeddedSGroupSUP_MUL.mrv 70: 70: Test 70: 70: EmbeddedSgroupCOP_SUP.mrv 70: 70: Test 70: 70: EmbeddedSgroupDAT_SUP.mrv 70: 70: Test 70: 70: EmbeddedSgroupMULTICENTER_SUP.mrv 70: 70: Test 70: 70: EmbeddedSgroupMUL_MUL.mrv 70: 70: Test 70: 70: EmbeddedSgroupMUL_MUL2.mrv 70: 70: Test 70: 70: EmbeddedSgroupMUL_SUP.mrv 70: 70: Test 70: 70: EmbeddedSgroupSRU_SUP.mrv 70: 70: Test 70: 70: EmbeddedSgroupSUPEXP_SUP.mrv 70: 70: Test 70: 70: EmbeddedSgroupSUPEXP_SUP2.mrv 70: 70: Test 70: 70: EmbeddedSgroupSUP_MULTICENTER.mrv 70: 70: Test 70: 70: EmbeddedSgroupSUP_SUP.mrv 70: 70: Test 70: 70: EmbeddedSgroupSUP_SUP2.mrv 70: 70: Test 70: 70: RgroupBad.mrv 70: 70: Test 70: 70: valenceLessThanDrawn.mrv 70: 70: Test 70: 70: data_sgroup_no_fieldname.mrv 70: 70: Test 70: 70: data_sgroup_empty_field_data.mrv 70: 70: Test 70: 70: radical_value.mrv 70: 70: Test 70: 70: emptyOneLineAtomList.mrv 70: 70: Test 70: 70: mrvValence_value.mrv 70: 70: Test 70: 70: ChiralTest2.mrv 70: 70: Test 70: 70: ChiralTest.mrv 70: 70: Test 70: 70: SnCl2.mrv 70: 70: Test 70: 70: SnH2Cl2.mrv 70: 70: Test 70: 70: marvin01.mrv 70: 70: Test 70: 70: marvin02.mrv 70: 70: Test 70: 70: marvin07.mrv 70: 70: Test 70: 70: marvin10.mrv 70: 70: Test 70: 70: marvin06.mrv 70: 70: Test 70: 70: marvin12.mrv 70: 70: Test 70: 70: EmptyMol.mrv 70: 70: Test 70: 70: Sparse.mrv 70: 70: Test 70: 70: Sparse2.mrv 70: 70: Test 70: 70: Sparse3.mrv 70: 70: Test 70: 70: MarvinNoCoords.mrv 70: 70: Test 70: 70: aspirin.mrv 70: 70: Test 70: 70: MarvinStereoGroupsZeros.mrv 70: 70: Test 70: 70: MarvinStereoGroupsAbs.mrv 70: 70: Test 70: 70: triphenylphosphine.mrv 70: 70: Test 70: 70: MarvinOldSuperGroupTest.mrv 70: 70: Test 70: 70: RadicalTests.mrv 70: 70: Test 70: 70: AnyBond.mrv 70: 70: Test 70: 70: cisBenzene.mrv 70: 70: Test 70: 70: DativeBond.mrv 70: 70: Test 70: 70: MultipleSgroup.mrv 70: 70: Test 70: 70: SgroupExpanded.mrv 70: 70: Test 70: 70: SgroupMultAttach.mrv 70: 70: Test 70: 70: MarvinMissingX2.mrv 70: 70: Test 70: 70: MarvinMissingY2.mrv 70: 70: Test 70: 70: DataSgroup.mrv 70: 70: Test 70: 70: MulticenterSgroup.mrv 70: 70: [04:01:33] Can't kekulize mol. Unkekulized atoms: 6 7 8 9 10 70: [04:01:33] Can't kekulize mol. Unkekulized atoms: 6 7 8 9 10 70: Test 70: 70: GenericSgroup.mrv 70: 70: Test 70: 70: MonomerSgroup.mrv 70: 70: Test 70: 70: modification_sgroup.mrv 70: 70: Test 70: 70: copolymer_sgroup.mrv 70: 70: Test 70: 70: MultipleSgroupParentInMiddleOfAtomBlock.mrv 70: 70: Test 70: 70: EmbeddedSgroups.mrv 70: 70: Test 70: 70: marvin03.mrv 70: 70: Test 70: 70: MarvinBadMissingMolID.mrv 70: 70: [04:01:33] 70: 70: **** 70: Test Assert 70: Expression Failed: 70: Violation occurred on line 329 in file ./Code/GraphMol/MarvinParse/testMrvToMol.cpp 70: Failed Expression: GetExpectedValue(expectedMrvName) == outMolStr 70: ---------- 70: Stacktrace: 70: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 70: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 70: 2# 0x000000013B838530 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse/testMrvToMol 70: 3# 0x000000013B84532C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse/testMrvToMol 70: 4# 0x000000013B828578 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MarvinParse/testMrvToMol 70: 5# 0x00007FFF9F227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 70: 6# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 70: ---------- 70: **** 70: 70: Test 70: 70: MarvinBadMissingAtomID.mrv 70: 70: Expected id, elementType for an atom definition in MRV file 70: Test 70: 70: MarvinBadX2.mrv 70: 70: The values x2 and y2 must be large floats in MRV file 70: Test 70: 70: MarvinBadY2.mrv 70: 70: The values x2 and y2 must be large floats in MRV file 70: Test 70: 70: MarvinBadStereoGroupsAbs.mrv 70: 70: Unrecognized group definition 70: Test 70: 70: MarvinBadElementType.mrv 70: 70: Test 70: 70: MarvinBadMissingBondID.mrv 70: 70: Test 70: 70: MarvinBadMissingBondAtomRefs 70: 70: Test 70: 70: MarvinBadMissingBondOrder.mrv 70: 70: bond must have one of: order, queryType, or convention in MRV File 70: Test 70: 70: MarvinBadMissingSruMolID.mrv 70: 70: Expected a molID in MRV file 70: Test 70: 70: MarvinBadMissingSruID.mrv 70: 70: Test 70: 70: MarvinBadMissingSruRole.mrv 70: 70: Test 70: 70: MarvinBadMissingSruAtomRef.mrv 70: 70: Test 70: 70: MarvinBadMissingSruTitle.mrv 70: 70: Test 70: 70: MarvinBadSruAtomRef.mrv 70: 70: AtomRef specification for an SRU, Copolymer, or Modification group definition was not found in any parent 70: Test 70: 70: MarvinBadSruID.mrv 70: 70: Test 70: 70: MarvinBadSruRole.mrv 70: 70: Test 70: 70: MarvinBadSruAtomRef.mrv 70: 70: AtomRef specification for an SRU, Copolymer, or Modification group definition was not found in any parent 70: Test 70: 70: MarvinBadSruAtomRef.mrv 70: 70: AtomRef specification for an SRU, Copolymer, or Modification group definition was not found in any parent 70: Test 70: 70: MarvinBadSruConnect.mrv 70: 70: Expected a connect string of "hh, ht, eu" for a SruSgroup definition in MRV file 70: Test 70: 70: MarvinBadSupAttachAtom.mrv 70: 70: Atom specification for an AttachmentPoint definition must be in the parent's atom array in MRV file 70: Test 70: 70: MarvinBadSupAttachBond.mrv 70: 70: Bond specification for an AttachmentPoint definition must be in the bond array in MRV file 70: Test 70: 70: MarvinBadSupAttachOrder.mrv 70: 70: Order for an AttachmentPoint definition must be an integer in MRV file 70: Test 70: 70: MarvinBadSupAttachAtom.mrv 70: 70: Atom specification for an AttachmentPoint definition must be in the parent's atom array in MRV file 70: Test 70: 70: MarvinBadSupAttachAtom.mrv 70: 70: Atom specification for an AttachmentPoint definition must be in the parent's atom array in MRV file 70: Test 70: 70: MarvinBadSupAttachAtom.mrv 70: 70: Atom specification for an AttachmentPoint definition must be in the parent's atom array in MRV file 70: Test 70: 70: MarvinBadSupMissingAttachBond.mrv 70: 70: No attachment point found for bond to the condensed atom in a superatomSgroup 70: Test 70: 70: MarvinBadSupMissingAttachOrder.mrv 70: 70: Expected atom, order and bond, for an AttachmentPoint definition in MRV file 70: Test 70: 70: marvin03.mrv 70: 70: Test 70: 70: Cubane.mrv 70: 70: Test 70: 70: FalseAtropisomer.mrv 70: 70: Test 70: 70: AtropEnhancedStereo.mrv 70: 70: Test 70: 70: AtropManyChirals.mrv 70: 70: Test 70: 70: AtropManyChiralsEnhanced.mrv 70: 70: Test 70: 70: AtropManyChiralsEnhanced2.mrv 70: 70: Test 70: 70: AtropManyChiralsEnhanced3.mrv 70: 70: Test 70: 70: AtropManyChiralsEnhanced4.mrv 70: 70: Test 70: 70: BMS-986142_3d_chiral.mrv 70: 70: Test 70: 70: BMS-986142_3d.mrv 70: 70: Test 70: 70: BMS-986142_atrop1.mrv 70: 70: Test 70: 70: BMS-986142_atrop2.mrv 70: 70: Test 70: 70: BMS-986142_atrop3.mrv 70: 70: Test 70: 70: BMS-986142_atrop4.mrv 70: 70: Test 70: 70: BMS-986142_atrop5.mrv 70: 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: Test 70: 70: BMS-986142_atrop6.mrv 70: 70: Test 70: 70: BMS-986142_atrop7.mrv 70: 70: Test 70: 70: BMS-986142_atrop8.mrv 70: 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: Test 70: 70: BMS-986142_atropBad2.mrv 70: 70: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29 70: Test 70: 70: JDQ443_3d.mrv 70: 70: Test 70: 70: JDQ443_atrop1.mrv 70: 70: Test 70: 70: JDQ443_atrop2.mrv 70: 70: Test 70: 70: JDQ443_atrop3.mrv 70: 70: Test 70: 70: JDQ443_atropBad1.mrv 70: 70: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21 70: Test 70: 70: RP-6306_atrop1.mrv 70: 70: Test 70: 70: RP-6306_atrop2.mrv 70: 70: Test 70: 70: RP-6306_atrop3.mrv 70: 70: Test 70: 70: RP-6306_atrop4.mrv 70: 70: Test 70: 70: RP-6306_atrop5.mrv 70: 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 70: Test 70: 70: RP-6306_atropBad1.mrv 70: 70: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8 70: Test 70: 70: RP-6306_atropBad2.mrv 70: 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 70: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8 70: Test 70: 70: RP-6306_3d.mrv 70: 70: Test 70: 70: Sotorasib_atrop1.mrv 70: 70: Test 70: 70: Sotorasib_atrop2.mrv 70: 70: Test 70: 70: Sotorasib_atrop3.mrv 70: 70: Test 70: 70: Sotorasib_atrop4.mrv 70: 70: Test 70: 70: Sotorasib_atrop5.mrv 70: 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: Test 70: 70: Sotorasib_atropBad1.mrv 70: 70: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20 70: Test 70: 70: Sotorasib_atropBad2.mrv 70: 70: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20 70: Test 70: 70: Sotorasib_3d.mrv 70: 70: Test 70: 70: ZM374979_atrop1.mrv 70: 70: Test 70: 70: ZM374979_atrop2.mrv 70: 70: Test 70: 70: ZM374979_atrop3.mrv 70: 70: Test 70: 70: ZM374979_atropBad1.mrv 70: 70: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31 70: Test 70: 70: mrtx1719_3d.mrv 70: 70: Test 70: 70: mrtx1719_atrop1.mrv 70: 70: Test 70: 70: mrtx1719_atrop2.mrv 70: 70: Test 70: 70: mrtx1719_atrop3.mrv 70: 70: Test 70: 70: mrtx1719_atropBad1.mrv 70: 70: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16 71: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored 71: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored 71: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored 71: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored 71: [04:01:34] deprecated group abbreviation ignored on line 24 71: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*] 71: [04:01:34] 71: 71: **** 71: Post-condition Violation 71: Element 'Mv' not found 71: Violation occurred on line 93 in file ./Code/GraphMol/PeriodicTable.h 71: Failed Expression: anum > -1 71: ---------- 71: Stacktrace: 71: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 71: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 71: 2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string, std::allocator > const&) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 3# 0x00007FFF87EBA43C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 4# 0x00007FFF87ED0B58 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 5# 0x00007FFF87ED1B98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 6# RDKit::FileParserUtils::ParseV2000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 8# RDKit::v2::FileParsers::MolFromMolFile(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 9# 0x0000000139CA4018 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 10# 0x0000000139D2E1E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 11# 0x0000000139C755CC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 12# 0x00007FFF87227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 71: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 71: ---------- 71: **** 71: 70: Test 70: 70: FalseAtropisomer.mrv 70: 70: Test 70: 70: AtropEnhancedStereo.mrv 70: 70: Test 70: 70: AtropManyChirals.mrv 70: 70: Test 70: 70: AtropManyChiralsEnhanced.mrv 70: 70: Test 70: 70: AtropManyChiralsEnhanced2.mrv 70: 70: Test 70: 70: AtropManyChiralsEnhanced3.mrv 70: 70: Test 70: 70: AtropManyChiralsEnhanced4.mrv 70: 70: Test 70: 70: BMS-986142_3d_chiral.mrv 70: 70: Test 70: 70: BMS-986142_3d.mrv 70: 70: Test 70: 70: BMS-986142_atrop1.mrv 70: 70: Test 70: 70: BMS-986142_atrop2.mrv 70: 70: Test 70: 70: BMS-986142_atrop3.mrv 70: 70: Test 70: 70: BMS-986142_atrop4.mrv 70: 70: Test 70: 70: BMS-986142_atrop5.mrv 70: 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: Test 70: 70: BMS-986142_atrop6.mrv 70: 70: Test 70: 70: BMS-986142_atrop7.mrv 70: 70: Test 70: 70: BMS-986142_atrop8.mrv 70: 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 71: [04:01:34] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D. 71: [04:01:34] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D. 70: Test 70: 70: BMS-986142_atropBad2.mrv 70: 70: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29 71: ---------------------------------- 71: ---------------------------------- 71: [04:01:34] 71: 71: **** 71: Pre-condition Violation 71: rlabel out of range for MDL files 71: Violation occurred on line 868 in file ./Code/GraphMol/Atom.cpp 71: Failed Expression: rlabel >= 0 && rlabel < 100 71: ---------- 71: Stacktrace: 71: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 71: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 71: 2# RDKit::setAtomRLabel(RDKit::Atom*, int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 71: 3# 0x0000000139C7E558 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 4# 0x0000000139D2E2A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 5# 0x0000000139C755CC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 6# 0x00007FFF87227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 71: 7# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 71: ---------- 71: **** 71: 70: Test 70: 70: JDQ443_3d.mrv 70: 70: Test 70: 70: JDQ443_atrop1.mrv 70: 70: Test 70: 70: JDQ443_atrop2.mrv 70: 70: Test 70: 70: JDQ443_atrop3.mrv 70: 70: Test 70: 70: JDQ443_atropBad1.mrv 70: 70: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21 71: [04:01:34] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 70: Test 70: 70: RP-6306_atrop1.mrv 70: 70: Test 70: 70: RP-6306_atrop2.mrv 70: 70: Test 70: 70: RP-6306_atrop3.mrv 70: 70: Test 70: 70: RP-6306_atrop4.mrv 70: 70: Test 70: 70: RP-6306_atrop5.mrv 70: 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 70: Test 70: 70: RP-6306_atropBad1.mrv 70: 70: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8 70: Test 70: 70: RP-6306_atropBad2.mrv 70: 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 70: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8 70: Test 70: 70: RP-6306_3d.mrv 70: 70: Test 70: 70: Sotorasib_atrop1.mrv 70: 70: Test 70: 70: Sotorasib_atrop2.mrv 70: 70: Test 70: 70: Sotorasib_atrop3.mrv 70: 70: Test 70: 70: Sotorasib_atrop4.mrv 70: 70: Test 70: 70: Sotorasib_atrop5.mrv 70: 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: Test 70: 70: Sotorasib_atropBad1.mrv 70: 70: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20 70: Test 70: 70: Sotorasib_atropBad2.mrv 70: 70: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20 70: Test 70: 70: Sotorasib_3d.mrv 70: 70: Test 70: 70: ZM374979_atrop1.mrv 70: 70: Test 70: 70: ZM374979_atrop2.mrv 70: 70: Test 70: 70: ZM374979_atrop3.mrv 70: 70: Test 70: 70: ZM374979_atropBad1.mrv 70: 70: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31 70: Test 70: 70: mrtx1719_3d.mrv 70: 70: Test 70: 70: mrtx1719_atrop1.mrv 70: 70: Test 70: 70: mrtx1719_atrop2.mrv 70: 70: Test 70: 70: mrtx1719_atrop3.mrv 70: 70: Test 70: 70: mrtx1719_atropBad1.mrv 70: 70: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16 71: [04:01:34] SMARTS Parse Error: syntax error while parsing: MyDogHasFleas 71: [04:01:34] SMARTS Parse Error: check for mistakes around position 1: 71: [04:01:34] MyDogHasFleas 71: [04:01:34] ^ 71: [04:01:34] SMARTS Parse Error: Failed parsing SMARTS 'MyDogHasFleas' for input: 'MyDogHasFleas' 64/246 Test #43: resMolSupplierTest ..................... Passed 5.40 sec test 72 Start 72: testAtropisomers 72: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testAtropisomers 72: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 72: Test timeout computed to be: 7200 71: [04:01:34] Empty atom list: 'M ALS 1 0 F' on line 8. 71: C 71: [04:01:34] ------------------------------------- 71: [04:01:34] Test multithreading Locale Switching 72: [04:01:34] ---- Running with POSIX locale ----- 71: [04:01:34] Test multithreading (Done) 71: [04:01:34] ------------------------------------- 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 71: *************************************** 71: *************************************** 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 71: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 71: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 71: [04:01:34] bond with order 0 found on line 7. This is not part of the MDL specification. 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 70: Test 70: 70: AlexRxn.mrv 70: 70: Test 70: 70: BadReactionSign.mrv 70: 70: Test 70: 70: bondArray_node.mrv 70: 70: Test 70: 70: marvin03.mrv 70: 70: Test 70: 70: marvin04.mrv 70: 70: Test 70: 70: marvin08.mrv 70: 70: Test 70: 70: marvin09.mrv 70: 70: Test 70: 70: marvin11.mrv 70: 70: Test 70: 70: marvin05.mrv 70: 70: Test 70: 70: EmptyRxn.mrv 70: 70: [04:01:34] initialization failed 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 71: [04:01:34] Skipping unrecognized collection type at line 26: MDLV30/HILITE BONDS=(1 7) 71: [04:01:34] Skipping unrecognized collection type at line 27: MDLV30/HILITE ATOMS=(1 7) 71: [04:01:34] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D. 71: generating smiles 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 71: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2 71: converting back 71: check isomorphism 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29 72: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29 72: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 29 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 70: Test 70: 70: RxnNoCoords.mrv 70: 70: Test 70: 70: mrvValenceZero.mrv 70: 70: Test 70: 70: condition_coordinates_mpoint.mrv 70: 70: Test 70: 70: marvin01.mrv 70: 70: Test 70: 70: aspirineSynthesisWithAttributes.mrv 70: 70: Test 70: 70: marvin01.mrv 70: 70: Test 70: 70: NewChiralTest 70: 70: Test 70: 70: NewChiralTest 70: 70: Test 70: 70: NewChiralTestNoChiral 70: 70: Test 70: 70: NewChiralTestNoChiral 70: 70: Test 70: 70: NewChiralTest2 70: 70: Test 70: 70: NewChiralTest2 70: 70: Test 70: 70: NewChiralTest2AllChiral 70: 70: Test 70: 70: NewChiralTest2AllChiral 70: 70: Test 70: 70: Vendor839 70: 70: Test 70: 70: DoubleBondChain 70: 70: Test 70: 70: Na_Mg_Al_OH 70: 70: Test 70: 70: Pb 70: 70: Test 70: 70: O_Mg_Si 70: 70: Test 70: 70: SquiggleBond 70: 70: Test 70: 70: BigMacrocycle 70: 70: Test 70: 70: Smiles1 70: 65/246 Test #70: testMrvToMol ........................... Passed 1.39 sec test 73 Start 73: testSquiggleDoubleBonds 73: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testSquiggleDoubleBonds 73: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 73: Test timeout computed to be: 7200 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 17 21 73: Randomness seeded to: 1627296028 73: =============================================================================== 73: All tests passed (15 assertions in 3 test cases) 73: 66/246 Test #73: testSquiggleDoubleBonds ................ Passed 0.04 sec test 74 Start 74: testMolSupplier 74: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testMolSupplier 74: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 74: Test timeout computed to be: 7200 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8 72: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8 72: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 2 8 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 2 ignored 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 2 8 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 74: [04:01:34] 74: ----------------------------------------- 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 63: [04:01:34] SMARTS Parse Error: unclosed ring for input: 'C1.C2.C3.C4.C5' 63: [04:01:34] SMILES Parse Error: unclosed ring for input: 'C1.C2.C3.C4.C5' 63: [04:01:34] SMARTS Parse Error: syntax error while parsing: C1C)foo 63: [04:01:34] SMARTS Parse Error: check for mistakes around position 4: 63: [04:01:34] C1C)foo 63: [04:01:34] ~~~^ 63: [04:01:34] SMARTS Parse Error: Failed parsing SMARTS 'C1C)foo' for input: 'C1C)foo' 63: [04:01:34] SMILES Parse Error: extra close parentheses while parsing: C1C)foo 63: [04:01:34] SMILES Parse Error: check for mistakes around position 4: 63: [04:01:34] C1C)foo 63: [04:01:34] ~~~^ 63: [04:01:34] SMILES Parse Error: Failed parsing SMILES 'C1C)foo' for input: 'C1C)foo' 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 63: [04:01:34] 63: 63: **** 63: Pre-condition Violation 63: rootedAtAtom must be less than the number of atoms 63: Violation occurred on line 498 in file ./Code/GraphMol/SmilesParse/SmilesWrite.cpp 63: Failed Expression: params.rootedAtAtom < 0 || static_cast(params.rootedAtAtom) < mol.getNumAtoms() 63: ---------- 63: Stacktrace: 63: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 63: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 63: 2# RDKit::SmilesWrite::detail::MolToSmiles[abi:cxx11](RDKit::ROMol const&, RDKit::SmilesWriteParams const&, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSmilesParse.so.1 63: 3# RDKit::MolToSmiles[abi:cxx11](RDKit::ROMol const&, RDKit::SmilesWriteParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSmilesParse.so.1 63: 4# 0x0000000110B9D610 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTestCatch 63: 5# 0x0000000110C5D154 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTestCatch 63: 6# 0x0000000110C500A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTestCatch 63: 7# 0x0000000110C50DF4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTestCatch 63: 8# 0x0000000110C51440 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTestCatch 63: 9# 0x0000000110C18198 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTestCatch 63: 10# 0x0000000110C187B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTestCatch 63: 11# 0x0000000110B9679C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SmilesParse/smiTestCatch 63: 12# 0x00007FFFAB027224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 63: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 63: ---------- 63: **** 63: 63: [04:01:34] SMILES Parse Error: syntax error while parsing: CClâ‚‚O 63: [04:01:34] SMILES Parse Error: check for mistakes around position 4: 63: [04:01:34] CClâ‚‚O 63: [04:01:34] ~~~^ 63: [04:01:34] SMILES Parse Error: Failed parsing SMILES 'CClâ‚‚O' for input: 'CClâ‚‚O' 63: [04:01:34] SMARTS Parse Error: syntax error while parsing: CClâ‚‚O 63: [04:01:34] SMARTS Parse Error: check for mistakes around position 4: 63: [04:01:34] CClâ‚‚O 63: [04:01:34] ~~~^ 63: [04:01:34] SMARTS Parse Error: Failed parsing SMARTS 'CClâ‚‚O' for input: 'CClâ‚‚O' 63: [04:01:34] SMILES Parse Error: syntax error while parsing: CClâ‚‚OZrâ‚‚CClO 63: [04:01:34] SMILES Parse Error: check for mistakes around position 4: 63: [04:01:34] CClâ‚‚OZrâ‚‚CClO 63: [04:01:34] ~~~^ 63: [04:01:34] SMILES Parse Error: Failed parsing SMILES 'CClâ‚‚OZrâ‚‚CClO' for input: 'CClâ‚‚OZrâ‚‚CClO' 63: [04:01:34] SMARTS Parse Error: syntax error while parsing: CClâ‚‚OZrâ‚‚CClO 63: [04:01:34] SMARTS Parse Error: check for mistakes around position 4: 63: [04:01:34] CClâ‚‚OZrâ‚‚CClO 63: [04:01:34] ~~~^ 63: [04:01:34] SMARTS Parse Error: Failed parsing SMARTS 'CClâ‚‚OZrâ‚‚CClO' for input: 'CClâ‚‚OZrâ‚‚CClO' 63: =============================================================================== 63: All tests passed (1834 assertions in 74 test cases) 63: 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20 67/246 Test #63: smiTestCatch ........................... Passed 3.24 sec test 75 Start 75: testGeneralFileReader 75: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testGeneralFileReader 75: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 75: Test timeout computed to be: 7200 74: [04:01:34] Ignoring invalid chirality label: '2_bad_chirality' 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 7 20 72: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20 72: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20 72: [04:01:34] The bonds on one end of an atropisomer are both UP or both DOWN - atoms are: 7 20 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 75: [04:01:34] 75: ----------------------------------------- 75: [04:01:34] Finished: testDetermineFormat() 75: [04:01:34] ----------------------------------------- 75: 75: [04:01:34] 75: ----------------------------------------- 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31 75: [04:01:34] Finished: testSdf() 75: [04:01:34] ----------------------------------------- 75: 75: [04:01:34] 75: ----------------------------------------- 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 0 31 74: [04:01:34] Ignoring invalid chirality label: '2_bad_chirality' 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:34] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 75: [04:01:34] Finished: testSmi() 75: [04:01:34] ----------------------------------------- 75: 75: [04:01:34] 75: ----------------------------------------- 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16 72: [04:01:34] The 2 defining bonds for an atropisomer are co-planar - atoms are: 15 16 74: [04:01:35] Finished: testMolSup() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testRandMolSup() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testSmilesSup() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] ------------------------------------------------------ 74: [04:01:35] SMILES Parse Error: syntax error while parsing: fail 74: [04:01:35] SMILES Parse Error: check for mistakes around position 1: 74: [04:01:35] fail 74: [04:01:35] ^ 74: [04:01:35] SMILES Parse Error: Failed parsing SMILES 'fail' for input: 'fail' 74: [04:01:35] ERROR: Smiles parse error on line 3 74: [04:01:35] ERROR: Cannot create molecule from : 'fail' 74: [04:01:35] ------------------------------------------------------ 74: [04:01:35] ------------------------------------------------------ 74: [04:01:35] >>> This may result in an infinite loop. It should finish almost immediately: 74: [04:01:35] <<< done. 74: [04:01:35] Finished: testSmilesSupFromText() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testSmilesWriter() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testSDWriter() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testSDSupplierEnding() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testSuppliersEmptyFile() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testCisTrans() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testStereoRound() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 74: [04:01:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 74: [04:01:35] Finished: testIssue226() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testTDTSupplier1() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testTDTSupplier2() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testTDTSupplier3() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testSDSupplierFromText() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] ERROR: Problems encountered parsing data fields 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] ERROR: Problems encountered parsing data fields 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] Spurious data before the first property will be ignored 74: [04:01:35] Property will be truncated after the first blank line 74: [04:01:35] Property will be truncated after the first blank line 74: [04:01:35] Property will be truncated after the first blank line 74: [04:01:35] Finished: testSDSupplierStrLax1() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] ERROR: Problems encountered parsing data fields 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] Property will be truncated after the first blank line 74: [04:01:35] Finished: testSDSupplierStrLax2() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] ERROR: Problems encountered parsing data fields 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] ERROR: Problems encountered parsing data fields 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] Spurious data before the first property will be ignored 74: [04:01:35] Property will be truncated after the first blank line 74: [04:01:35] Property will be truncated after the first blank line 74: [04:01:35] Property will be truncated after the first blank line 74: [04:01:35] Finished: testSDSupplierFromTextStrLax1() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] ERROR: Problems encountered parsing data fields 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] Property will be truncated after the first blank line 74: [04:01:35] Finished: testSDSupplierFromTextStrLax2() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testIssue265() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] ERROR: End of data field name not found 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] Explicit valence for atom # 0 F, 2, is greater than permitted 74: [04:01:35] ERROR: Could not sanitize molecule ending on line 16 74: [04:01:35] ERROR: Explicit valence for atom # 0 F, 2, is greater than permitted 74: [04:01:35] ERROR: Atom line too short: ' 1 2 1 0 0 0 0' on line 12 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] ERROR: Bond line too short: 'M END' on line 18 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] Finished: testSDErrorHandling() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 75: [04:01:35] Finished: testMae() 75: [04:01:35] ----------------------------------------- 75: 75: [04:01:35] 75: ----------------------------------------- 75: [04:01:35] Finished: testTdt() 75: [04:01:35] ----------------------------------------- 75: 68/246 Test #75: testGeneralFileReader .................. Passed 0.22 sec 74: [04:01:35] Finished: testIssue381() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- test 76 Start 76: testMultithreadedMolSupplier 76: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testMultithreadedMolSupplier 76: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 76: Test timeout computed to be: 7200 74: [04:01:35] Finished: testSetStreamIndices() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testMixIterAndRandom() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: build: 74: [04:01:35] Finished: testRemoveHs() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testGetItemText() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testForwardSDSupplier() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testMissingCRSDSupplier() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testIssue3482695() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] ERROR: Cannot convert 'foo' to unsigned int on line 557 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] Finished: testIssue3525673() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testBlankLinesInProps() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testSkipLines() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testGitHub23() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 76: [04:01:35] 76: ----------------------------------------- 74: [04:01:35] Finished: testGitHub88() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testGitHub2285() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] SMILES Parse Error: unclosed ring for input: 'c1ccccc' 74: [04:01:35] ERROR: Smiles parse error on line 1 74: [04:01:35] ERROR: Cannot create molecule from : 'c1ccccc' 74: [04:01:35] SMILES Parse Error: extra open parentheses while parsing: C(C 74: [04:01:35] SMILES Parse Error: check for mistakes around position 2: 74: [04:01:35] C(C 74: [04:01:35] ~^ 74: [04:01:35] SMILES Parse Error: Failed parsing SMILES 'C(C' for input: 'C(C' 74: [04:01:35] ERROR: Smiles parse error on line 3 74: [04:01:35] ERROR: Cannot create molecule from : 'C(C' 74: [04:01:35] Explicit valence for atom # 1 C, 5, is greater than permitted 74: [04:01:35] ERROR: Could not sanitize molecule on line 5 74: [04:01:35] ERROR: Explicit valence for atom # 1 C, 5, is greater than permitted 74: [04:01:35] Explicit valence for atom # 1 F, 2, is greater than permitted 74: [04:01:35] ERROR: Could not sanitize molecule ending on line 21 74: [04:01:35] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted 74: [04:01:35] Explicit valence for atom # 1 F, 2, is greater than permitted 74: [04:01:35] ERROR: Could not sanitize molecule ending on line 21 74: [04:01:35] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted 74: [04:01:35] Explicit valence for atom # 1 F, 2, is greater than permitted 74: [04:01:35] ERROR: Could not sanitize molecule ending on line 21 74: [04:01:35] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted 74: [04:01:35] ERROR: Atom line too short: ' -9.6' on line 28 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] Explicit valence for atom # 1 F, 2, is greater than permitted 74: [04:01:35] ERROR: Could not sanitize molecule ending on line 21 74: [04:01:35] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted 74: [04:01:35] ERROR: Atom line too short: ' -9.6' on line 28 74: [04:01:35] ERROR: moving to the beginning of the next molecule 74: [04:01:35] Finished: testGitHub2479() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Ignoring invalid chirality label: '7_S_8_9_6_10' 74: [04:01:35] Finished: testGitHub2881() 74: [04:01:35] ----------------------------------------- 74: 74: [04:01:35] ----------------------------------------- 74: [04:01:35] Finished: testGitHub3517() 74: [04:01:35] ----------------------------------------- 74: 69/246 Test #74: testMolSupplier ........................ Passed 0.39 sec test 77 Start 77: testMolWriter 77: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testMolWriter 77: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 77: Test timeout computed to be: 7200 72: [04:01:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: [04:01:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 72: Atropisomers- 1 hits 3 misses 72: Final results: 72: Found atropisomers in TestMultInSDF.sdf - 1 hits 4 misses 70/246 Test #72: testAtropisomers ....................... Passed 0.69 sec test 78 Start 78: testTplParser 78: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testTplParser 78: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 78: Test timeout computed to be: 7200 71/246 Test #78: testTplParser .......................... Passed 0.05 sec test 79 Start 79: testMol2ToMol 79: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testMol2ToMol 79: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 79: Test timeout computed to be: 7200 72/246 Test #79: testMol2ToMol .......................... Passed 0.08 sec test 80 Start 80: testSequence 80: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testSequence 80: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 80: Test timeout computed to be: 7200 80: Sequence: GREG 80: HELM: PEPTIDE1{G.R.E.G}$$$$ 80: Smiles: N=C(N)NCCC[C@H](NC(=O)CN)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)O 80: PDB: 80: ATOM 1 N GLY A 1 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 2 CA GLY A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 3 C GLY A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 4 O GLY A 1 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 5 N ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 6 CA ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 7 C ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 8 O ARG A 2 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 9 CB ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 10 CG ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 11 CD ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 12 NE ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 13 CZ ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 14 NH1 ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 15 NH2 ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 16 N GLU A 3 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 17 CA GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 18 C GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 19 O GLU A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 20 CB GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 21 CG GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 22 CD GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 23 OE1 GLU A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 24 OE2 GLU A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 25 N GLY A 4 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 26 CA GLY A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 27 C GLY A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 28 O GLY A 4 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 29 OXT GLY A 4 0.000 0.000 0.000 1.00 0.00 O 80: CONECT 1 2 80: CONECT 2 3 80: CONECT 3 4 4 5 80: CONECT 5 6 80: CONECT 6 7 9 80: CONECT 7 8 8 16 80: CONECT 9 10 80: CONECT 10 11 80: CONECT 11 12 80: CONECT 12 13 80: CONECT 13 14 14 15 80: CONECT 16 17 80: CONECT 17 18 20 80: CONECT 18 19 19 25 80: CONECT 20 21 80: CONECT 21 22 80: CONECT 22 23 23 24 80: CONECT 25 26 80: CONECT 26 27 80: CONECT 27 28 28 29 80: END 80: 80: Sequence: TTCCPSIVARSNFNVCRLPGTPEAICATYTGCIIIPGATCPGDYAN 80: HELM: PEPTIDE1{T.T.C.C.P.S.I.V.A.R.S.N.F.N.V.C.R.L.P.G.T.P.E.A.I.C.A.T.Y.T.G.C.I.I.I.P.G.A.T.C.P.G.D.Y.A.N}$$$$ 80: Smiles: CC[C@H](C)[C@H](NC(=O)[C@H](C)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](NC(=O)CNC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CS)NC(=O)[C@@H](NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CO)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CS)NC(=O)[C@H](CS)NC(=O)[C@@H](NC(=O)[C@@H](N)[C@@H](C)O)[C@@H](C)O)[C@@H](C)CC)C(C)C)C(C)C)[C@@H](C)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](CS)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CS)C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(N)=O)C(=O)O)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)O 80: PDB: 80: ATOM 1 N THR A 1 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 2 CA THR A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 3 C THR A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 4 O THR A 1 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 5 CB THR A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 6 OG1 THR A 1 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 7 CG2 THR A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 8 N THR A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 9 CA THR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 10 C THR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 11 O THR A 2 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 12 CB THR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 13 OG1 THR A 2 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 14 CG2 THR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 15 N CYS A 3 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 16 CA CYS A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 17 C CYS A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 18 O CYS A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 19 CB CYS A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 20 SG CYS A 3 0.000 0.000 0.000 1.00 0.00 S 80: ATOM 21 N CYS A 4 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 22 CA CYS A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 23 C CYS A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 24 O CYS A 4 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 25 CB CYS A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 26 SG CYS A 4 0.000 0.000 0.000 1.00 0.00 S 80: ATOM 27 N PRO A 5 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 28 CA PRO A 5 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 29 C PRO A 5 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 30 O PRO A 5 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 31 CB PRO A 5 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 32 CG PRO A 5 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 33 CD PRO A 5 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 34 N SER A 6 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 35 CA SER A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 36 C SER A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 37 O SER A 6 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 38 CB SER A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 39 OG SER A 6 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 40 N ILE A 7 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 41 CA ILE A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 42 C ILE A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 43 O ILE A 7 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 44 CB ILE A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 45 CG1 ILE A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 46 CG2 ILE A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 47 CD1 ILE A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 48 N VAL A 8 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 49 CA VAL A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 50 C VAL A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 51 O VAL A 8 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 52 CB VAL A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 53 CG1 VAL A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 54 CG2 VAL A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 55 N ALA A 9 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 56 CA ALA A 9 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 57 C ALA A 9 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 58 O ALA A 9 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 59 CB ALA A 9 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 60 N ARG A 10 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 61 CA ARG A 10 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 62 C ARG A 10 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 63 O ARG A 10 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 64 CB ARG A 10 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 65 CG ARG A 10 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 66 CD ARG A 10 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 67 NE ARG A 10 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 68 CZ ARG A 10 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 69 NH1 ARG A 10 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 70 NH2 ARG A 10 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 71 N SER A 11 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 72 CA SER A 11 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 73 C SER A 11 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 74 O SER A 11 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 75 CB SER A 11 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 76 OG SER A 11 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 77 N ASN A 12 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 78 CA ASN A 12 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 79 C ASN A 12 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 80 O ASN A 12 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 81 CB ASN A 12 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 82 CG ASN A 12 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 83 OD1 ASN A 12 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 84 ND2 ASN A 12 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 85 N PHE A 13 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 86 CA PHE A 13 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 87 C PHE A 13 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 88 O PHE A 13 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 89 CB PHE A 13 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 90 CG PHE A 13 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 91 CD1 PHE A 13 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 92 CD2 PHE A 13 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 93 CE1 PHE A 13 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 94 CE2 PHE A 13 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 95 CZ PHE A 13 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 96 N ASN A 14 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 97 CA ASN A 14 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 98 C ASN A 14 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 99 O ASN A 14 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 100 CB ASN A 14 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 101 CG ASN A 14 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 102 OD1 ASN A 14 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 103 ND2 ASN A 14 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 104 N VAL A 15 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 105 CA VAL A 15 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 106 C VAL A 15 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 107 O VAL A 15 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 108 CB VAL A 15 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 109 CG1 VAL A 15 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 110 CG2 VAL A 15 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 111 N CYS A 16 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 112 CA CYS A 16 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 113 C CYS A 16 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 114 O CYS A 16 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 115 CB CYS A 16 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 116 SG CYS A 16 0.000 0.000 0.000 1.00 0.00 S 80: ATOM 117 N ARG A 17 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 118 CA ARG A 17 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 119 C ARG A 17 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 120 O ARG A 17 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 121 CB ARG A 17 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 122 CG ARG A 17 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 123 CD ARG A 17 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 124 NE ARG A 17 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 125 CZ ARG A 17 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 126 NH1 ARG A 17 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 127 NH2 ARG A 17 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 128 N LEU A 18 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 129 CA LEU A 18 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 130 C LEU A 18 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 131 O LEU A 18 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 132 CB LEU A 18 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 133 CG LEU A 18 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 134 CD1 LEU A 18 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 135 CD2 LEU A 18 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 136 N PRO A 19 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 137 CA PRO A 19 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 138 C PRO A 19 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 139 O PRO A 19 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 140 CB PRO A 19 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 141 CG PRO A 19 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 142 CD PRO A 19 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 143 N GLY A 20 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 144 CA GLY A 20 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 145 C GLY A 20 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 146 O GLY A 20 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 147 N THR A 21 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 148 CA THR A 21 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 149 C THR A 21 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 150 O THR A 21 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 151 CB THR A 21 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 152 OG1 THR A 21 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 153 CG2 THR A 21 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 154 N PRO A 22 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 155 CA PRO A 22 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 156 C PRO A 22 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 157 O PRO A 22 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 158 CB PRO A 22 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 159 CG PRO A 22 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 160 CD PRO A 22 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 161 N GLU A 23 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 162 CA GLU A 23 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 163 C GLU A 23 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 164 O GLU A 23 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 165 CB GLU A 23 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 166 CG GLU A 23 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 167 CD GLU A 23 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 168 OE1 GLU A 23 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 169 OE2 GLU A 23 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 170 N ALA A 24 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 171 CA ALA A 24 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 172 C ALA A 24 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 173 O ALA A 24 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 174 CB ALA A 24 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 175 N ILE A 25 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 176 CA ILE A 25 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 177 C ILE A 25 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 178 O ILE A 25 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 179 CB ILE A 25 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 180 CG1 ILE A 25 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 181 CG2 ILE A 25 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 182 CD1 ILE A 25 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 183 N CYS A 26 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 184 CA CYS A 26 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 185 C CYS A 26 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 186 O CYS A 26 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 187 CB CYS A 26 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 188 SG CYS A 26 0.000 0.000 0.000 1.00 0.00 S 80: ATOM 189 N ALA A 27 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 190 CA ALA A 27 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 191 C ALA A 27 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 192 O ALA A 27 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 193 CB ALA A 27 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 194 N THR A 28 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 195 CA THR A 28 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 196 C THR A 28 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 197 O THR A 28 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 198 CB THR A 28 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 199 OG1 THR A 28 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 200 CG2 THR A 28 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 201 N TYR A 29 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 202 CA TYR A 29 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 203 C TYR A 29 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 204 O TYR A 29 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 205 CB TYR A 29 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 206 CG TYR A 29 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 207 CD1 TYR A 29 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 208 CD2 TYR A 29 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 209 CE1 TYR A 29 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 210 CE2 TYR A 29 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 211 CZ TYR A 29 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 212 OH TYR A 29 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 213 N THR A 30 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 214 CA THR A 30 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 215 C THR A 30 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 216 O THR A 30 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 217 CB THR A 30 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 218 OG1 THR A 30 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 219 CG2 THR A 30 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 220 N GLY A 31 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 221 CA GLY A 31 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 222 C GLY A 31 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 223 O GLY A 31 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 224 N CYS A 32 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 225 CA CYS A 32 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 226 C CYS A 32 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 227 O CYS A 32 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 228 CB CYS A 32 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 229 SG CYS A 32 0.000 0.000 0.000 1.00 0.00 S 80: ATOM 230 N ILE A 33 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 231 CA ILE A 33 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 232 C ILE A 33 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 233 O ILE A 33 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 234 CB ILE A 33 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 235 CG1 ILE A 33 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 236 CG2 ILE A 33 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 237 CD1 ILE A 33 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 238 N ILE A 34 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 239 CA ILE A 34 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 240 C ILE A 34 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 241 O ILE A 34 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 242 CB ILE A 34 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 243 CG1 ILE A 34 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 244 CG2 ILE A 34 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 245 CD1 ILE A 34 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 246 N ILE A 35 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 247 CA ILE A 35 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 248 C ILE A 35 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 249 O ILE A 35 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 250 CB ILE A 35 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 251 CG1 ILE A 35 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 252 CG2 ILE A 35 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 253 CD1 ILE A 35 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 254 N PRO A 36 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 255 CA PRO A 36 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 256 C PRO A 36 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 257 O PRO A 36 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 258 CB PRO A 36 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 259 CG PRO A 36 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 260 CD PRO A 36 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 261 N GLY A 37 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 262 CA GLY A 37 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 263 C GLY A 37 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 264 O GLY A 37 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 265 N ALA A 38 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 266 CA ALA A 38 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 267 C ALA A 38 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 268 O ALA A 38 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 269 CB ALA A 38 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 270 N THR A 39 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 271 CA THR A 39 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 272 C THR A 39 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 273 O THR A 39 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 274 CB THR A 39 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 275 OG1 THR A 39 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 276 CG2 THR A 39 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 277 N CYS A 40 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 278 CA CYS A 40 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 279 C CYS A 40 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 280 O CYS A 40 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 281 CB CYS A 40 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 282 SG CYS A 40 0.000 0.000 0.000 1.00 0.00 S 80: ATOM 283 N PRO A 41 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 284 CA PRO A 41 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 285 C PRO A 41 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 286 O PRO A 41 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 287 CB PRO A 41 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 288 CG PRO A 41 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 289 CD PRO A 41 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 290 N GLY A 42 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 291 CA GLY A 42 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 292 C GLY A 42 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 293 O GLY A 42 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 294 N ASP A 43 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 295 CA ASP A 43 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 296 C ASP A 43 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 297 O ASP A 43 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 298 CB ASP A 43 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 299 CG ASP A 43 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 300 OD1 ASP A 43 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 301 OD2 ASP A 43 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 302 N TYR A 44 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 303 CA TYR A 44 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 304 C TYR A 44 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 305 O TYR A 44 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 306 CB TYR A 44 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 307 CG TYR A 44 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 308 CD1 TYR A 44 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 309 CD2 TYR A 44 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 310 CE1 TYR A 44 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 311 CE2 TYR A 44 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 312 CZ TYR A 44 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 313 OH TYR A 44 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 314 N ALA A 45 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 315 CA ALA A 45 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 316 C ALA A 45 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 317 O ALA A 45 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 318 CB ALA A 45 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 319 N ASN A 46 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 320 CA ASN A 46 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 321 C ASN A 46 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 322 O ASN A 46 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 323 CB ASN A 46 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 324 CG ASN A 46 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 325 OD1 ASN A 46 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 326 ND2 ASN A 46 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 327 OXT ASN A 46 0.000 0.000 0.000 1.00 0.00 O 80: CONECT 1 2 80: CONECT 2 3 5 80: CONECT 3 4 4 8 80: CONECT 5 6 7 80: CONECT 8 9 80: CONECT 9 10 12 80: CONECT 10 11 11 15 80: CONECT 12 13 14 80: CONECT 15 16 80: CONECT 16 17 19 80: CONECT 17 18 18 21 80: CONECT 19 20 80: CONECT 21 22 80: CONECT 22 23 25 80: CONECT 23 24 24 27 80: CONECT 25 26 80: CONECT 27 28 33 80: CONECT 28 29 31 80: CONECT 29 30 30 34 80: CONECT 31 32 80: CONECT 32 33 80: CONECT 34 35 80: CONECT 35 36 38 80: CONECT 36 37 37 40 80: CONECT 38 39 80: CONECT 40 41 80: CONECT 41 42 44 80: CONECT 42 43 43 48 80: CONECT 44 45 46 80: CONECT 46 47 80: CONECT 48 49 80: CONECT 49 50 52 80: CONECT 50 51 51 55 80: CONECT 52 53 54 80: CONECT 55 56 80: CONECT 56 57 59 80: CONECT 57 58 58 60 80: CONECT 60 61 80: CONECT 61 62 64 80: CONECT 62 63 63 71 80: CONECT 64 65 80: CONECT 65 66 80: CONECT 66 67 80: CONECT 67 68 80: CONECT 68 69 69 70 80: CONECT 71 72 80: CONECT 72 73 75 80: CONECT 73 74 74 77 80: CONECT 75 76 80: CONECT 77 78 80: CONECT 78 79 81 80: CONECT 79 80 80 85 80: CONECT 81 82 80: CONECT 82 83 83 84 80: CONECT 85 86 80: CONECT 86 87 89 80: CONECT 87 88 88 96 80: CONECT 89 90 80: CONECT 90 91 91 92 80: CONECT 91 93 80: CONECT 92 94 94 80: CONECT 93 95 95 80: CONECT 94 95 80: CONECT 96 97 80: CONECT 97 98 100 80: CONECT 98 99 99 104 80: CONECT 100 101 80: CONECT 101 102 102 103 80: CONECT 104 105 80: CONECT 105 106 108 80: CONECT 106 107 107 111 80: CONECT 108 109 110 80: CONECT 111 112 80: CONECT 112 113 115 80: CONECT 113 114 114 117 80: CONECT 115 116 80: CONECT 117 118 80: CONECT 118 119 121 80: CONECT 119 120 120 128 80: CONECT 121 122 80: CONECT 122 123 80: CONECT 123 124 80: CONECT 124 125 80: CONECT 125 126 126 127 80: CONECT 128 129 80: CONECT 129 130 132 80: CONECT 130 131 131 136 80: CONECT 132 133 80: CONECT 133 134 135 80: CONECT 136 137 142 80: CONECT 137 138 140 80: CONECT 138 139 139 143 80: CONECT 140 141 80: CONECT 141 142 80: CONECT 143 144 80: CONECT 144 145 80: CONECT 145 146 146 147 80: CONECT 147 148 80: CONECT 148 149 151 80: CONECT 149 150 150 154 80: CONECT 151 152 153 80: CONECT 154 155 160 80: CONECT 155 156 158 80: CONECT 156 157 157 161 80: CONECT 158 159 80: CONECT 159 160 80: CONECT 161 162 80: CONECT 162 163 165 80: CONECT 163 164 164 170 80: CONECT 165 166 80: CONECT 166 167 80: CONECT 167 168 168 169 80: CONECT 170 171 80: CONECT 171 172 174 80: CONECT 172 173 173 175 80: CONECT 175 176 80: CONECT 176 177 179 80: CONECT 177 178 178 183 80: CONECT 179 180 181 80: CONECT 181 182 80: CONECT 183 184 80: CONECT 184 185 187 80: CONECT 185 186 186 189 80: CONECT 187 188 80: CONECT 189 190 80: CONECT 190 191 193 80: CONECT 191 192 192 194 80: CONECT 194 195 80: CONECT 195 196 198 80: CONECT 196 197 197 201 80: CONECT 198 199 200 80: CONECT 201 202 80: CONECT 202 203 205 80: CONECT 203 204 204 213 80: CONECT 205 206 80: CONECT 206 207 207 208 80: CONECT 207 209 80: CONECT 208 210 210 80: CONECT 209 211 211 80: CONECT 210 211 80: CONECT 211 212 80: CONECT 213 214 80: CONECT 214 215 217 80: CONECT 215 216 216 220 80: CONECT 217 218 219 80: CONECT 220 221 80: CONECT 221 222 80: CONECT 222 223 223 224 80: CONECT 224 225 80: CONECT 225 226 228 80: CONECT 226 227 227 230 80: CONECT 228 229 80: CONECT 230 231 80: CONECT 231 232 234 80: CONECT 232 233 233 238 80: CONECT 234 235 236 80: CONECT 236 237 80: CONECT 238 239 80: CONECT 239 240 242 80: CONECT 240 241 241 246 80: CONECT 242 243 244 80: CONECT 244 245 80: CONECT 246 247 80: CONECT 247 248 250 80: CONECT 248 249 249 254 80: CONECT 250 251 252 80: CONECT 252 253 80: CONECT 254 255 260 80: CONECT 255 256 258 80: CONECT 256 257 257 261 80: CONECT 258 259 80: CONECT 259 260 80: CONECT 261 262 80: CONECT 262 263 80: CONECT 263 264 264 265 80: CONECT 265 266 80: CONECT 266 267 269 80: CONECT 267 268 268 270 80: CONECT 270 271 80: CONECT 271 272 274 80: CONECT 272 273 273 277 80: CONECT 274 275 276 80: CONECT 277 278 80: CONECT 278 279 281 80: CONECT 279 280 280 283 80: CONECT 281 282 80: CONECT 283 284 289 80: CONECT 284 285 287 80: CONECT 285 286 286 290 80: CONECT 287 288 80: CONECT 288 289 80: CONECT 290 291 80: CONECT 291 292 80: CONECT 292 293 293 294 80: CONECT 294 295 80: CONECT 295 296 298 80: CONECT 296 297 297 302 80: CONECT 298 299 80: CONECT 299 300 300 301 80: CONECT 302 303 80: CONECT 303 304 306 80: CONECT 304 305 305 314 80: CONECT 306 307 80: CONECT 307 308 308 309 80: CONECT 308 310 80: CONECT 309 311 311 80: CONECT 310 312 312 80: CONECT 311 312 80: CONECT 312 313 80: CONECT 314 315 80: CONECT 315 316 318 80: CONECT 316 317 317 319 80: CONECT 319 320 80: CONECT 320 321 323 80: CONECT 321 322 322 327 80: CONECT 323 324 80: CONECT 324 325 325 326 80: END 80: 80: Sequence: GREG 80: HELM: PEPTIDE1{G.R.E.G}$$$$ 80: Smiles: N=C(N)NCCC[C@H](NC(=O)CN)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)O 80: PDB: 80: ATOM 1 N GLY A 1 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 2 CA GLY A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 3 C GLY A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 4 O GLY A 1 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 5 N ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 6 CA ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 7 C ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 8 O ARG A 2 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 9 CB ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 10 CG ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 11 CD ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 12 NE ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 13 CZ ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 14 NH1 ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 15 NH2 ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 16 N GLU A 3 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 17 CA GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 18 C GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 19 O GLU A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 20 CB GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 21 CG GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 22 CD GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 23 OE1 GLU A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 24 OE2 GLU A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 25 N GLY A 4 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 26 CA GLY A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 27 C GLY A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 28 O GLY A 4 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 29 OXT GLY A 4 0.000 0.000 0.000 1.00 0.00 O 80: CONECT 1 2 80: CONECT 2 3 80: CONECT 3 4 4 5 80: CONECT 5 6 80: CONECT 6 7 9 80: CONECT 7 8 8 16 80: CONECT 9 10 80: CONECT 10 11 80: CONECT 11 12 80: CONECT 12 13 80: CONECT 13 14 14 15 80: CONECT 16 17 80: CONECT 17 18 20 80: CONECT 18 19 19 25 80: CONECT 20 21 80: CONECT 21 22 80: CONECT 22 23 23 24 80: CONECT 25 26 80: CONECT 26 27 80: CONECT 27 28 28 29 80: END 80: 80: Sequence: CYIQNCPLG 80: HELM: PEPTIDE1{C.Y.I.Q.N.C.P.L.G.[am]}$PEPTIDE1,PEPTIDE1,1:R3-6:R3$$$ 80: Smiles: CC[C@H](C)[C@@H]1NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)[C@@H](N)CSSC[C@@H](C(=O)N2CCC[C@H]2C(=O)N[C@@H](CC(C)C)C(=O)NCC(N)=O)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CCC(N)=O)NC1=O 80: PDB: 80: ATOM 1 N CYS A 1 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 2 CA CYS A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 3 C CYS A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 4 O CYS A 1 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 5 CB CYS A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 6 SG CYS A 1 0.000 0.000 0.000 1.00 0.00 S 80: ATOM 7 N TYR A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 8 CA TYR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 9 C TYR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 10 O TYR A 2 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 11 CB TYR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 12 CG TYR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 13 CD1 TYR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 14 CD2 TYR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 15 CE1 TYR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 16 CE2 TYR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 17 CZ TYR A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 18 OH TYR A 2 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 19 N ILE A 3 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 20 CA ILE A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 21 C ILE A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 22 O ILE A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 23 CB ILE A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 24 CG1 ILE A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 25 CG2 ILE A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 26 CD1 ILE A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 27 N GLN A 4 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 28 CA GLN A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 29 C GLN A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 30 O GLN A 4 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 31 CB GLN A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 32 CG GLN A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 33 CD GLN A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 34 OE1 GLN A 4 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 35 NE2 GLN A 4 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 36 N ASN A 5 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 37 CA ASN A 5 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 38 C ASN A 5 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 39 O ASN A 5 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 40 CB ASN A 5 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 41 CG ASN A 5 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 42 OD1 ASN A 5 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 43 ND2 ASN A 5 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 44 N CYS A 6 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 45 CA CYS A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 46 C CYS A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 47 O CYS A 6 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 48 CB CYS A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 49 SG CYS A 6 0.000 0.000 0.000 1.00 0.00 S 80: ATOM 50 N PRO A 7 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 51 CA PRO A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 52 C PRO A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 53 O PRO A 7 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 54 CB PRO A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 55 CG PRO A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 56 CD PRO A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 57 N LEU A 8 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 58 CA LEU A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 59 C LEU A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 60 O LEU A 8 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 61 CB LEU A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 62 CG LEU A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 63 CD1 LEU A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 64 CD2 LEU A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 65 N GLY A 9 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 66 CA GLY A 9 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 67 C GLY A 9 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 68 O GLY A 9 0.000 0.000 0.000 1.00 0.00 O 80: HETATM 69 N NH2 A 10 0.000 0.000 0.000 1.00 0.00 N 80: CONECT 1 2 80: CONECT 2 3 5 80: CONECT 3 4 4 7 80: CONECT 5 6 80: CONECT 6 49 80: CONECT 7 8 80: CONECT 8 9 11 80: CONECT 9 10 10 19 80: CONECT 11 12 80: CONECT 12 13 13 14 80: CONECT 13 15 80: CONECT 14 16 16 80: CONECT 15 17 17 80: CONECT 16 17 80: CONECT 17 18 80: CONECT 19 20 80: CONECT 20 21 23 80: CONECT 21 22 22 27 80: CONECT 23 24 25 80: CONECT 25 26 80: CONECT 27 28 80: CONECT 28 29 31 80: CONECT 29 30 30 36 80: CONECT 31 32 80: CONECT 32 33 80: CONECT 33 34 34 35 80: CONECT 36 37 80: CONECT 37 38 40 80: CONECT 38 39 39 44 80: CONECT 40 41 80: CONECT 41 42 42 43 80: CONECT 44 45 80: CONECT 45 46 48 80: CONECT 46 47 47 50 80: CONECT 48 49 80: CONECT 50 51 56 80: CONECT 51 52 54 80: CONECT 52 53 53 57 80: CONECT 54 55 80: CONECT 55 56 80: CONECT 57 58 80: CONECT 58 59 61 80: CONECT 59 60 60 65 80: CONECT 61 62 80: CONECT 62 63 64 80: CONECT 65 66 80: CONECT 66 67 80: CONECT 67 68 68 69 80: END 80: 80: Sequence: LfPVXLfPVX 80: HELM: PEPTIDE1{L.[dF].P.V.[Orn].L.[dF].P.V.[Orn]}$PEPTIDE1,PEPTIDE1,10:R2-1:R1$$$ 80: Smiles: CC(C)C[C@@H]1NC(=O)[C@H](CCCN)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc2ccccc2)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCN)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc2ccccc2)NC1=O 80: PDB: 80: ATOM 1 N LEU A 1 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 2 CA LEU A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 3 C LEU A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 4 O LEU A 1 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 5 CB LEU A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 6 CG LEU A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 7 CD1 LEU A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 8 CD2 LEU A 1 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 9 N DPN A 2 0.000 0.000 0.000 1.00 0.00 N 80: HETATM 10 CA DPN A 2 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 11 C DPN A 2 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 12 O DPN A 2 0.000 0.000 0.000 1.00 0.00 O 80: HETATM 13 CB DPN A 2 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 14 CG DPN A 2 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 15 CD1 DPN A 2 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 16 CD2 DPN A 2 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 17 CE1 DPN A 2 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 18 CE2 DPN A 2 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 19 CZ DPN A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 20 N PRO A 3 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 21 CA PRO A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 22 C PRO A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 23 O PRO A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 24 CB PRO A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 25 CG PRO A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 26 CD PRO A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 27 N VAL A 4 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 28 CA VAL A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 29 C VAL A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 30 O VAL A 4 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 31 CB VAL A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 32 CG1 VAL A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 33 CG2 VAL A 4 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 34 N ORN A 5 0.000 0.000 0.000 1.00 0.00 N 80: HETATM 35 CA ORN A 5 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 36 C ORN A 5 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 37 O ORN A 5 0.000 0.000 0.000 1.00 0.00 O 80: HETATM 38 CB ORN A 5 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 39 CG ORN A 5 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 40 CD ORN A 5 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 41 NE ORN A 5 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 42 N LEU A 6 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 43 CA LEU A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 44 C LEU A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 45 O LEU A 6 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 46 CB LEU A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 47 CG LEU A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 48 CD1 LEU A 6 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 49 CD2 LEU A 6 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 50 N DPN A 7 0.000 0.000 0.000 1.00 0.00 N 80: HETATM 51 CA DPN A 7 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 52 C DPN A 7 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 53 O DPN A 7 0.000 0.000 0.000 1.00 0.00 O 80: HETATM 54 CB DPN A 7 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 55 CG DPN A 7 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 56 CD1 DPN A 7 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 57 CD2 DPN A 7 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 58 CE1 DPN A 7 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 59 CE2 DPN A 7 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 60 CZ DPN A 7 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 61 N PRO A 8 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 62 CA PRO A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 63 C PRO A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 64 O PRO A 8 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 65 CB PRO A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 66 CG PRO A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 67 CD PRO A 8 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 68 N VAL A 9 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 69 CA VAL A 9 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 70 C VAL A 9 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 71 O VAL A 9 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 72 CB VAL A 9 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 73 CG1 VAL A 9 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 74 CG2 VAL A 9 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 75 N ORN A 10 0.000 0.000 0.000 1.00 0.00 N 80: HETATM 76 CA ORN A 10 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 77 C ORN A 10 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 78 O ORN A 10 0.000 0.000 0.000 1.00 0.00 O 80: HETATM 79 CB ORN A 10 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 80 CG ORN A 10 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 81 CD ORN A 10 0.000 0.000 0.000 1.00 0.00 C 80: HETATM 82 NE ORN A 10 0.000 0.000 0.000 1.00 0.00 N 80: CONECT 1 2 77 80: CONECT 2 3 5 80: CONECT 3 4 4 9 80: CONECT 5 6 80: CONECT 6 7 8 80: CONECT 9 10 80: CONECT 10 11 13 80: CONECT 11 12 12 20 80: CONECT 13 14 80: CONECT 14 15 15 16 80: CONECT 15 17 80: CONECT 16 18 18 80: CONECT 17 19 19 80: CONECT 18 19 80: CONECT 20 21 26 80: CONECT 21 22 24 80: CONECT 22 23 23 27 80: CONECT 24 25 80: CONECT 25 26 80: CONECT 27 28 80: CONECT 28 29 31 80: CONECT 29 30 30 34 80: CONECT 31 32 33 80: CONECT 34 35 80: CONECT 35 36 38 80: CONECT 36 37 37 42 80: CONECT 38 39 80: CONECT 39 40 80: CONECT 40 41 80: CONECT 42 43 80: CONECT 43 44 46 80: CONECT 44 45 45 50 80: CONECT 46 47 80: CONECT 47 48 49 80: CONECT 50 51 80: CONECT 51 52 54 80: CONECT 52 53 53 61 80: CONECT 54 55 80: CONECT 55 56 56 57 80: CONECT 56 58 80: CONECT 57 59 59 80: CONECT 58 60 60 80: CONECT 59 60 80: CONECT 61 62 67 80: CONECT 62 63 65 80: CONECT 63 64 64 68 80: CONECT 65 66 80: CONECT 66 67 80: CONECT 68 69 80: CONECT 69 70 72 80: CONECT 70 71 71 75 80: CONECT 72 73 74 80: CONECT 75 76 80: CONECT 76 77 79 80: CONECT 77 78 78 80: CONECT 79 80 80: CONECT 80 81 80: CONECT 81 82 80: END 80: 80: Sequence: GREG 80: HELM: PEPTIDE1{G.R.E.G}$$$$ 80: Smiles: N=C(N)NCCCC(NC(=O)CN)C(=O)NC(CCC(=O)O)C(=O)NCC(=O)O 80: PDB: 80: ATOM 1 N GLY A 1 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 2 CA GLY A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 3 C GLY A 1 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 4 O GLY A 1 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 5 N ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 6 CA ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 7 C ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 8 O ARG A 2 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 9 CB ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 10 CG ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 11 CD ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 12 NE ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 13 CZ ARG A 2 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 14 NH1 ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 15 NH2 ARG A 2 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 16 N GLU A 3 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 17 CA GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 18 C GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 19 O GLU A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 20 CB GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 21 CG GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 22 CD GLU A 3 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 23 OD1 GLU A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 24 OD2 GLU A 3 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 25 N GLY A 4 0.000 0.000 0.000 1.00 0.00 N 80: ATOM 26 CA GLY A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 27 C GLY A 4 0.000 0.000 0.000 1.00 0.00 C 80: ATOM 28 O GLY A 4 0.000 0.000 0.000 1.00 0.00 O 80: ATOM 29 OXT GLY A 4 0.000 0.000 0.000 1.00 0.00 O 80: CONECT 1 2 80: CONECT 2 3 80: CONECT 3 4 4 5 80: CONECT 5 6 80: CONECT 6 7 9 80: CONECT 7 8 8 16 80: CONECT 9 10 80: CONECT 10 11 80: CONECT 11 12 80: CONECT 12 13 80: CONECT 13 14 14 15 80: CONECT 16 17 80: CONECT 17 18 20 80: CONECT 18 19 19 25 80: CONECT 20 21 80: CONECT 21 22 80: CONECT 22 23 23 24 80: CONECT 25 26 80: CONECT 26 27 80: CONECT 27 28 28 29 80: END 80: 73/246 Test #80: testSequence ........................... Passed 0.07 sec test 81 Start 81: testExtendedStereoParsing 81: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testExtendedStereoParsing 81: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 81: Test timeout computed to be: 7200 74/246 Test #81: testExtendedStereoParsing .............. Passed 0.07 sec test 82 Start 82: fileParsersCatchTest 82: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 82: Test timeout computed to be: 7200 82: Randomness seeded to: 669062290 82: [04:01:35] SGroup SAP line too short: 'M SAP 1 1 8' on line 29 82: [04:01:35] SGroup SAP line too short: 'M SAP 1 1 8' on line 28 82: [04:01:35] Could not infer missing lvIdx on malformed SAP line for SGroup 1 82: [04:01:35] SGroup 1 is invalid and will be ignored 82: [04:01:35] SGroup SAP line too short: 'M SAP 1 1 8' on line 28 82: [04:01:35] Could not infer missing lvIdx on malformed SAP line for SGroup 1 82: [04:01:35] SGroup 1 is invalid and will be ignored 82: [04:01:35] SGroup SAP line too short: 'M SAP 1 1 8' on line 35 82: [04:01:35] SGroup SAP line too short: 'M SAP 2 1 12' on line 39 82: [04:01:35] SGroup SAP line too short: 'M SAP 1 1 8' on line 34 82: [04:01:35] SGroup SAP line too short: 'M SAP 2 1 12' on line 38 82: [04:01:35] Could not infer missing lvIdx on malformed SAP line for SGroup 1 82: [04:01:35] SGroup 1 is invalid and will be ignored 82: [04:01:35] SGroup SAP line too short: 'M SAP 1 1 8' on line 34 82: [04:01:35] SGroup SAP line too short: 'M SAP 2 1 12' on line 39 82: [04:01:35] Could not infer missing lvIdx on malformed SAP line for SGroup 1 82: [04:01:35] SGroup 1 is invalid and will be ignored 82: [04:01:35] SGroup 3 referenced on line 40 not found. 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: no bonds 82: Violation occurred on line 181 in file ./Code/GraphMol/SubstanceGroup.cpp 82: Failed Expression: !d_bonds.empty() 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::SubstanceGroup::addCState(unsigned int, RDGeom::Point3D const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SGroupParsing::ParseSGroupV2000SBVLine(std::map, std::allocator > >&, RDKit::RWMol*, std::__cxx11::basic_string, std::allocator > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 4# 0x00007FFFA10CEB3C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# 0x0000000120A5E1FC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 8# 0x0000000120A26A3C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 17# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] SGroup 3 referenced on line 40 not found. 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: no bonds 82: Violation occurred on line 181 in file ./Code/GraphMol/SubstanceGroup.cpp 82: Failed Expression: !d_bonds.empty() 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::SubstanceGroup::addCState(unsigned int, RDGeom::Point3D const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SGroupParsing::ParseSGroupV2000SBVLine(std::map, std::allocator > >&, RDKit::RWMol*, std::__cxx11::basic_string, std::allocator > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 4# 0x00007FFFA10CEB3C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# 0x0000000120A26AC4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 8# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 16# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] no bonds 82: [04:01:35] SGroup 1 is invalid and will be ignored 82: [04:01:35] SGroup line too short: 'M SBV 1 6' on line 42 82: [04:01:35] SGroup 1 is invalid and will be ignored 82: [04:01:35] SGroup line too short: 'M SBL 2 3 9 10' on line 46 82: [04:01:35] SGroup 2 is invalid and will be ignored 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 267 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_bondBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseSGroupV2000VectorDataLine(std::map, std::allocator > >&, RDKit::RWMol*, std::__cxx11::basic_string, std::allocator > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# 0x00007FFFA10CE938 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# 0x0000000120A5E1FC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120A2751C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 267 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_bondBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseSGroupV2000VectorDataLine(std::map, std::allocator > >&, RDKit::RWMol*, std::__cxx11::basic_string, std::allocator > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# 0x00007FFFA10CE938 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# 0x0000000120A275A4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 17# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] bookmark not found 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bond is not part of the SubstanceGroup 82: Violation occurred on line 200 in file ./Code/GraphMol/SubstanceGroup.cpp 82: Failed Expression: std::find(d_bonds.begin(), d_bonds.end(), bondIdx) != d_bonds.end() 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::SubstanceGroup::getBondType(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addCState(unsigned int, RDGeom::Point3D const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseSGroupV2000SBVLine(std::map, std::allocator > >&, RDKit::RWMol*, std::__cxx11::basic_string, std::allocator > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# 0x00007FFFA10CEB3C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# 0x0000000120A275A4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 17# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] bond is not part of the SubstanceGroup 82: [04:01:35] SGroup 2 is invalid and will be ignored 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 245 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_atomBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseSGroupV2000VectorDataLine(std::map, std::allocator > >&, RDKit::RWMol*, std::__cxx11::basic_string, std::allocator > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# 0x00007FFFA10CE938 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# 0x0000000120A5E1FC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120A278BC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 245 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_atomBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseSGroupV2000VectorDataLine(std::map, std::allocator > >&, RDKit::RWMol*, std::__cxx11::basic_string, std::allocator > const&, unsigned int, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# 0x00007FFFA10CE938 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# 0x0000000120A27944 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 17# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] bookmark not found 82: [04:01:35] Neither beginning nor ending atoms of bond 9 is in this SubstanceGroup. 82: [04:01:35] SGroup 2 is invalid and will be ignored 82: [04:01:35] WARNING: final character of V3000 array is not ')' 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 267 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_bondBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseV3000ParseLabel(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_stringstream, std::allocator >&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, unsigned int, RDKit::SubstanceGroup&, unsigned long, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# RDKit::SGroupParsing::ParseV3000SGroupsBlock[abi:cxx11](std::istream*, unsigned int&, unsigned int, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x0000000120A24FDC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] WARNING: final character of V3000 array is not ')' 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 267 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_bondBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseV3000ParseLabel(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_stringstream, std::allocator >&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, unsigned int, RDKit::SubstanceGroup&, unsigned long, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# RDKit::SGroupParsing::ParseV3000SGroupsBlock[abi:cxx11](std::istream*, unsigned int&, unsigned int, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x0000000120A25080 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] bookmark not found 82: [04:01:35] SGroup 1 is invalid and will be ignored 82: [04:01:35] WARNING: final character of V3000 array is not ')' 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 245 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_atomBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseV3000ParseLabel(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_stringstream, std::allocator >&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, unsigned int, RDKit::SubstanceGroup&, unsigned long, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# RDKit::SGroupParsing::ParseV3000SGroupsBlock[abi:cxx11](std::istream*, unsigned int&, unsigned int, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x0000000120A5E1FC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120A253CC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 18# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 19# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] WARNING: final character of V3000 array is not ')' 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 245 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_atomBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseV3000ParseLabel(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_stringstream, std::allocator >&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, unsigned int, RDKit::SubstanceGroup&, unsigned long, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# RDKit::SGroupParsing::ParseV3000SGroupsBlock[abi:cxx11](std::istream*, unsigned int&, unsigned int, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x0000000120A25470 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] bookmark not found 82: [04:01:35] SGroup 1 is invalid and will be ignored 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 267 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_bondBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseV3000ParseLabel(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_stringstream, std::allocator >&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, unsigned int, RDKit::SubstanceGroup&, unsigned long, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# RDKit::SGroupParsing::ParseV3000SGroupsBlock[abi:cxx11](std::istream*, unsigned int&, unsigned int, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x0000000120A5E1FC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120A257BC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 18# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 19# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 267 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_bondBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addBondWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseV3000ParseLabel(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_stringstream, std::allocator >&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, unsigned int, RDKit::SubstanceGroup&, unsigned long, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# RDKit::SGroupParsing::ParseV3000SGroupsBlock[abi:cxx11](std::istream*, unsigned int&, unsigned int, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x0000000120A25860 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] bookmark not found 82: [04:01:35] SGroup 2 is invalid and will be ignored 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 245 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_atomBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseV3000ParseLabel(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_stringstream, std::allocator >&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, unsigned int, RDKit::SubstanceGroup&, unsigned long, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# RDKit::SGroupParsing::ParseV3000SGroupsBlock[abi:cxx11](std::istream*, unsigned int&, unsigned int, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x0000000120A5E1FC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120A25BAC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 18# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 19# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: bookmark not found 82: Violation occurred on line 245 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: (lu != d_atomBookmarks.end()) 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getUniqueAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::SubstanceGroup::addAtomWithBookmark(int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# RDKit::SGroupParsing::ParseV3000ParseLabel(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_stringstream, std::allocator >&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, unsigned int, RDKit::SubstanceGroup&, unsigned long, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# RDKit::SGroupParsing::ParseV3000SGroupsBlock[abi:cxx11](std::istream*, unsigned int&, unsigned int, RDKit::RWMol*, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x0000000120A25C50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] bookmark not found 82: [04:01:35] SGroup 2 is invalid and will be ignored 82: [04:01:35] Explicit valence for atom # 2 O, 3, is greater than permitted 82: [04:01:35] Explicit valence for atom # 1 O, 3, is greater than permitted 82: [04:01:35] Explicit valence for atom # 1 C, 5, is greater than permitted 77: [04:01:35] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D. 77: 0.40201265 0.40201265 77: -0.13299436 -0.13299436 77: 1.00000017 1.00000017 77: 0.8762226 0.8762226 77: 0.9973909 0.9973909 77: 1.00000003 1.00000003 77: 0.36613799 0.36613799 77: 2.1107185 2.1107185 77: 0.99999982 0.99999982 77: 2.48696157 2.48696157 77: 1.00479935 1.00479935 77: 0.99999999 0.99999999 77: 3.03311841 3.03311841 77: 2.23739955 2.23739955 77: 1.0000001 1.0000001 77: 3.00772337 3.00772337 77: 0.37399294 0.37399294 77: 2.07713325 2.07713325 77: 3.0077234 3.0077234 77: 0.37399312 0.37399312 77: -0.07713336 -0.07713336 82: [04:01:35] sanitize [04:01:35] UNK: [04:01:35] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D. 77: [04:01:35] bond with order 0 found on line 11. This is not part of the MDL specification. 77: [04:01:35] bond with order 0 found on line 16. This is not part of the MDL specification. 82: [04:01:35] skipping block at line 7: 'BEGIN ATOM' 82: ATOM 1 CHLO CHL 0 0.000 0.000 0.000 1.00 0.00 CL 82: END 82: 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: no stream 82: Violation occurred on line 133 in file ./Code/GraphMol/FileParsers/SDMolSupplier.cpp 82: Failed Expression: dp_inStream 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::v2::FileParsers::SDMolSupplier::next() in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 3# 0x0000000120A66184 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 4# 0x0000000120A1A958 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 5# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 6# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 7# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 8# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: no stream 82: Violation occurred on line 187 in file ./Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp 82: Failed Expression: dp_inStream 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::v2::FileParsers::ForwardSDMolSupplier::next() in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 3# 0x0000000120A66184 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 4# 0x0000000120A1AB50 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 5# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 6# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 7# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 8# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: no stream 82: Violation occurred on line 409 in file ./Code/GraphMol/FileParsers/SmilesMolSupplier.cpp 82: Failed Expression: dp_inStream 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::v2::FileParsers::SmilesMolSupplier::next() in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 3# 0x0000000120A66184 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 4# 0x0000000120A1AF1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 5# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 6# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 7# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 8# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: no stream 82: Violation occurred on line 264 in file ./Code/GraphMol/FileParsers/TDTMolSupplier.cpp 82: Failed Expression: dp_inStream 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::v2::FileParsers::TDTMolSupplier::next() in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 3# 0x0000000120A66184 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 4# 0x0000000120A1B248 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 5# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 6# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 7# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 8# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: no stream 82: Violation occurred on line 593 in file ./Code/GraphMol/FileParsers/MaeMolSupplier.cpp 82: Failed Expression: dp_sInStream != nullptr 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::v2::FileParsers::MaeMolSupplier::next() in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 3# 0x0000000120A66184 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 4# 0x0000000120A1B4B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 5# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 6# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 7# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 8# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] Found a SCD/SED line with missing/empty SDT specification at line 21 82: [04:01:35] Found a SCD/SED line with missing/empty SDT specification at line 20 82: [04:01:35] BEGIN SGROUP line not found on line 14 82: [04:01:35] Unhandled CTAB feature: 'Unsupported SGroup type '' on line 18'. Molecule skipped. 82: [04:01:35] END SGROUP line not found on line 19 82: [04:01:35] END SGROUP line not found on line 21 82: [04:01:35] MRV_COORDINATE_BOND_TYPE SGroup with value 0 does not reference a query bond, ignoring. 82: [04:01:35] MRV_COORDINATE_BOND_TYPE SGroup with value 1 does not reference a query bond, ignoring. 82: [04:01:35] 82: 82: **** 82: Range Error 82: idx 82: Violation occurred on line 329 in file ./Code/GraphMol/ROMol.cpp 82: Failed Expression: 99 < 9 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::ROMol::getBondWithIdx(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 3# RDKit::ROMol::getBondWithIdx(unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 82: 4# 0x00007FFFA10E0610 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# 0x00007FFFA10E15A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::finishMolProcessing(RDKit::RWMol*, bool, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x0000000120A5F4E4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120A15A18 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 18# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 19# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] molecule does not contain a bond matching the MRV_COORDINATE_BOND_TYPE SGroup for bond 99, ignoring. 82: [04:01:35] Multiple ATTCHPT values for atom 2 on line 9 82: [04:01:35] Found a SCD/SED line with missing/empty SDT specification at line 12 82: [04:01:35] SMARTS Parse Error: syntax error while parsing: [#6;R 82: [04:01:35] SMARTS Parse Error: check for mistakes around position 5: 82: [04:01:35] [#6;R 82: [04:01:35] ~~~~^ 82: [04:01:35] SMARTS Parse Error: Failed parsing SMARTS '[#6;R' for input: '[#6;R' 82: [04:01:35] SMARTS for SMARTSQ '[#6;R' could not be parsed or has no atoms. Ignoring it. 82: [04:01:35] Skipping empty SMARTS value for SMARTSQ. 82: [04:01:35] unrecognized QUERYOP '>' for SMARTSQ. Query ignored. 82: [04:01:35] Found a SCD/SED line with missing/empty SDT specification at line 12 82: [04:01:35] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 82: [04:01:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 82: [04:01:35] WARNING: Skipping property bar because the value includes an illegal blank line 82: [04:01:35] WARNING: Skipping property baz because the value includes an illegal blank line 82: [04:01:35] WARNING: Skipping property bletch 82: nope because the name includes a newline 82: [04:01:35] WARNING: Skipping property bletch 82: nope2 because the name includes a newline 82: [04:01:35] 82: 82: **** 82: Post-condition Violation 82: Element 'QQQ' not found 82: Violation occurred on line 93 in file ./Code/GraphMol/PeriodicTable.h 82: Failed Expression: anum > -1 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string, std::allocator > const&) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 3# 0x00007FFFA10BA43C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 4# 0x00007FFFA10D44DC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# 0x00007FFFA10D6CA4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x00000001209EC484 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** 82: Post-condition Violation 82: Element 'QQQ' not found 82: Violation occurred on line 93 in file ./Code/GraphMol/PeriodicTable.h 82: Failed Expression: anum > -1 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string, std::allocator > const&) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 3# 0x00007FFFA10BA43C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 4# 0x00007FFFA10D44DC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# 0x00007FFFA10D6CA4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x00000001209EBC24 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** 75/246 Test #77: testMolWriter .......................... Passed 0.52 sec 82: Post-condition Violation 82: Element 'QQQ' not found 82: Violation occurred on line 93 in file ./Code/GraphMol/PeriodicTable.h 82: Failed Expression: anum > -1 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string, std::allocator > const&) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 3# 0x00007FFFA10BA43C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 4# 0x00007FFFA10D0B58 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# 0x00007FFFA10D1B98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV2000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x00000001209EC424 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] 82: 82: **** test 83 Start 83: macromolsCatchTest 83: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/macromolsCatchTest 83: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 83: Test timeout computed to be: 7200 82: Post-condition Violation 82: Element 'QQQ' not found 82: Violation occurred on line 93 in file ./Code/GraphMol/PeriodicTable.h 82: Failed Expression: anum > -1 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string, std::allocator > const&) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 3# 0x00007FFFA10BA43C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 4# 0x00007FFFA10D0B58 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 5# 0x00007FFFA10D1B98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 6# RDKit::FileParserUtils::ParseV2000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 8# RDKit::v2::FileParsers::MolFromMolBlock(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 9# 0x00000001209EC080 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 13# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 14# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 15# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 16# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 17# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 18# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] atom 3 has a negative isotope value. line: 15 82: [04:01:35] Ignoring invalid chirality label: '2_bad_chirality' 82: [04:01:35] 82: 82: **** 82: Pre-condition Violation 82: no input stream 82: Violation occurred on line 560 in file ./Code/GraphMol/FileParsers/MaeMolSupplier.cpp 82: Failed Expression: dp_sInStream 82: ---------- 82: Stacktrace: 82: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 82: 2# RDKit::v2::FileParsers::MaeMolSupplier::init() in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 3# RDKit::v2::FileParsers::MaeMolSupplier::reset() in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 82: 4# 0x0000000120A39C38 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 5# 0x0000000120AC7C54 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 6# 0x0000000120ABABA0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 7# 0x0000000120ABB8F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 8# 0x0000000120ABBF40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 9# 0x0000000120A82D98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 10# 0x0000000120A833B0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 11# 0x00000001209DDB1C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersCatchTest 82: 12# 0x00007FFFA0227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 82: ---------- 82: **** 82: 82: [04:01:35] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 82: [04:01:35] WARNING: atom 1 in input Maestro file has atomic number '0', which is reserved for internal use, and not allowed in inputs. The atom will be ignored.[04:01:35] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D. 82: [04:01:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 82: [04:01:35] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D. 82: [04:01:35] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 71: [04:01:36] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored 71: [04:01:36] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored 71: [04:01:36] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored 71: [04:01:36] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 1 ignored 71: [04:01:36] deprecated group abbreviation ignored on line 24 71: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*] 71: [04:01:36] 71: 71: **** 71: Post-condition Violation 71: Element 'Mv' not found 71: Violation occurred on line 93 in file ./Code/GraphMol/PeriodicTable.h 71: Failed Expression: anum > -1 71: ---------- 71: Stacktrace: 71: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 71: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 71: 2# RDKit::PeriodicTable::getAtomicNumber(std::__cxx11::basic_string, std::allocator > const&) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 3# 0x00007FFF87EBA43C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 4# 0x00007FFF87ED0B58 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 5# 0x00007FFF87ED1B98 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 6# RDKit::FileParserUtils::ParseV2000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 7# RDKit::v2::FileParsers::MolFromMolDataStream(std::istream&, unsigned int&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 8# RDKit::v2::FileParsers::MolFromMolFile(std::__cxx11::basic_string, std::allocator > const&, RDKit::v2::FileParsers::MolFileParserParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFileParsers.so.1 71: 9# 0x0000000139CA4018 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 10# 0x0000000139D2E1E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 11# 0x0000000139C75670 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 12# 0x00007FFF87227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 71: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 71: ---------- 71: **** 71: 71: [04:01:36] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D. 71: [04:01:36] Warning: molecule is tagged as 3D, but all Z coords are zero and 2D stereo markers have been found, marking the mol as 2D. 71: ---------------------------------- 71: ---------------------------------- 71: [04:01:36] 71: 71: **** 71: Pre-condition Violation 71: rlabel out of range for MDL files 71: Violation occurred on line 868 in file ./Code/GraphMol/Atom.cpp 71: Failed Expression: rlabel >= 0 && rlabel < 100 71: ---------- 71: Stacktrace: 71: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 71: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 71: 2# RDKit::setAtomRLabel(RDKit::Atom*, int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 71: 3# 0x0000000139C7E558 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 4# 0x0000000139D2E2A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 5# 0x0000000139C75670 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/fileParsersTest1 71: 6# 0x00007FFF87227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 71: 7# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 71: ---------- 71: **** 71: 71: [04:01:36] WARNING: could not find number of expected rings. Switching to an approximate ring finding algorithm. 71: [04:01:36] SMARTS Parse Error: syntax error while parsing: MyDogHasFleas 71: [04:01:36] SMARTS Parse Error: check for mistakes around position 1: 71: [04:01:36] MyDogHasFleas 71: [04:01:36] ^ 71: [04:01:36] SMARTS Parse Error: Failed parsing SMARTS 'MyDogHasFleas' for input: 'MyDogHasFleas' 71: [04:01:36] Empty atom list: 'M ALS 1 0 F' on line 8. 76/246 Test #71: fileParsersTest1 ....................... Passed 3.13 sec test 84 Start 84: testPropertyLists 84: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/testPropertyLists 84: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 84: Test timeout computed to be: 7200 84: Randomness seeded to: 2064034537 84: =============================================================================== 84: All tests passed (95 assertions in 4 test cases) 84: 77/246 Test #84: testPropertyLists ...................... Passed 0.06 sec test 85 Start 85: XYZFileParserCatchTest 85: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/XYZFileParserCatchTest 85: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 85: Test timeout computed to be: 7200 85: Randomness seeded to: 2500185225 85: =============================================================================== 85: All tests passed (100 assertions in 2 test cases) 85: 78/246 Test #85: XYZFileParserCatchTest ................. Passed 0.04 sec test 86 Start 86: cdxmlParserCatchTest 86: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/cdxmlParserCatchTest 86: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 86: Test timeout computed to be: 7200 86: Randomness seeded to: 712721105 86: [04:01:37] Invalid or missing fragment id from CDXML fragment, assigning new one... 86: [04:01:37] Explicit valence for atom # 3 N, 4, is greater than permitted 86: [04:01:37] CDXMLParser: failed sanitizing skipping fragment 32 86: [04:01:37] Bad bond in CDXML skipping fragment 58... 86: [04:01:37] Invalid or missing fragment id from CDXML fragment, assigning new one... 86: [04:01:37] Bad bond in CDXML skipping fragment 58... 86: [04:01:37] WARNING: not removing hydrogen atom without neighbors 86: [04:01:37] WARNING: not removing hydrogen atom without neighbors 86: [04:01:37] WARNING: not removing hydrogen atom without neighbors 86: [04:01:37] WARNING: not removing hydrogen atom without neighbors 86: [04:01:37] WARNING: not removing hydrogen atom without neighbors 86: [04:01:37] WARNING: not removing hydrogen atom without neighbors 86: [04:01:37] WARNING: not removing hydrogen atom without neighbors 86: [04:01:37] WARNING: not removing hydrogen atom without neighbors 86: [04:01:37] WARNING: not removing hydrogen atom without neighbors 86: [04:01:37] WARNING: not removing hydrogen atom without neighbors 86: [04:01:37] CDXMLParser: Schema 80180 step 80181 ReactionStepAgents reaction fragment 64603 not found in document. 86: [04:01:37] Incomplete atom labelling, cannot make bond 86: [04:01:37] Incomplete atom labelling, cannot make bond 86: [04:01:37] Incomplete atom labelling, cannot make bond 86: [04:01:37] Failed to parse XML fragment 5 node: n attribute: id: mydoghasfleas 86: [04:01:37] Failed to parse XML fragment 5 node: n attribute: id: mydoghasfleas 86: [04:01:37] Failed to parse XML fragment 5 node: b attribute: Order: slartibartfast 86: [04:01:37] Failed to parse XML fragment 5 node: b attribute: Order: 5 86: [04:01:37] Invalid or missing fragment id from CDXML fragment, assigning new one... 86: =============================================================================== 86: All tests passed (264 assertions in 7 test cases) 86: 79/246 Test #86: cdxmlParserCatchTest ................... Passed 0.28 sec test 87 Start 87: molfileStereoCatchTest 87: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/molfileStereoCatchTest 87: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 87: Test timeout computed to be: 7200 87: Randomness seeded to: 1961713237 87: [04:01:37] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored. 87: [04:01:37] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored. 87: [04:01:37] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored. 87: [04:01:37] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 2 ignored. 87: =============================================================================== 87: All tests passed (142 assertions in 6 test cases) 87: 80/246 Test #87: molfileStereoCatchTest ................. Passed 0.06 sec test 88 Start 88: connectTheDotsTest 88: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/connectTheDotsTest 88: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 88: Test timeout computed to be: 7200 88: Randomness seeded to: 692046425 88: [04:01:37] WARNING: not removing hydrogen atom without neighbors 88: [04:01:37] WARNING: not removing hydrogen atom without neighbors 88: [04:01:37] WARNING: not removing hydrogen atom without neighbors 88: [04:01:37] WARNING: not removing hydrogen atom without neighbors 88: =============================================================================== 88: All tests passed (18 assertions in 2 test cases) 88: 81/246 Test #88: connectTheDotsTest ..................... Passed 0.06 sec test 89 Start 89: v2MolSuppliers 89: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/v2MolSuppliers 89: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 89: Test timeout computed to be: 7200 89: Randomness seeded to: 2940586884 89: [04:01:37] Ignoring invalid chirality label: '12_R_1_3_4_5' 89: [04:01:37] Ignoring invalid chirality label: '12_ANR_1_3_4_15' 89: [04:01:37] Ignoring invalid chirality label: '2_S_1_3_4' 89: [04:01:37] Ignoring invalid chirality label: '2_ANS_1_3_4_5_2' 89: =============================================================================== 89: All tests passed (24 assertions in 6 test cases) 89: 82/246 Test #89: v2MolSuppliers ......................... Passed 0.08 sec test 90 Start 90: v2FileParsersCatchTest 90: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/v2FileParsersCatchTest 90: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 90: Test timeout computed to be: 7200 90: Randomness seeded to: 3163356360 90: =============================================================================== 90: All tests passed (6 assertions in 1 test case) 90: 83/246 Test #90: v2FileParsersCatchTest ................. Passed 0.09 sec test 91 Start 91: atropisomersCatch 91: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/atropisomersCatch 91: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 91: Test timeout computed to be: 7200 91: Randomness seeded to: 3870862343 91: [04:01:37] The 2 defining bonds for an atropisomer are co-planar - atoms are: 3 5 91: [04:01:37] The 2 defining bonds for an atropisomer are co-planar - atoms are: 3 5 91: =============================================================================== 91: All tests passed (88 assertions in 3 test cases) 91: 84/246 Test #91: atropisomersCatch ...................... Passed 0.06 sec test 92 Start 92: multithreadedSupplierCatchTest 92: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers/multithreadedSupplierCatchTest 92: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FileParsers 92: Test timeout computed to be: 7200 92: Randomness seeded to: 2501071251 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Read callback exception: I'm Sorry Dave. I'm afraid I can't do that. 92: [04:01:38] Explicit valence for atom # 9 N, 5, is greater than permitted 92: [04:01:38] Explicit valence for atom # 3 Al, 6, is greater than permitted 92: [04:01:38] Explicit valence for atom # 4 Al, 6, is greater than permitted 92: [04:01:38] Explicit valence for atom # 10 Si, 6, is greater than permitted 92: [04:01:38] Explicit valence for atom # 2 O, 4, is greater than permitted 92: [04:01:38] Explicit valence for atom # 3 Be, 4, is greater than permitted 92: [04:01:38] Explicit valence for atom # 3 Al, 6, is greater than permitted 92: [04:01:38] Explicit valence for atom # 27 P, 6, is greater than permitted 29: Checking against /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/test_data/MMFF94_reference.log... 29: All 191 tests passed 29: 29: Computing MMFF94 energies for /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.smi... 92: [04:01:39] Explicit valence for atom # 9 N, 5, is greater than permitted 92: [04:01:39] Explicit valence for atom # 3 Al, 6, is greater than permitted 92: [04:01:39] Explicit valence for atom # 4 Al, 6, is greater than permitted 92: [04:01:39] Explicit valence for atom # 10 Si, 6, is greater than permitted 92: [04:01:39] Explicit valence for atom # 2 O, 4, is greater than permitted 92: [04:01:39] Explicit valence for atom # 3 Al, 6, is greater than permitted 92: [04:01:39] Explicit valence for atom # 3 Be, 4, is greater than permitted 92: [04:01:39] Explicit valence for atom # 27 P, 6, is greater than permitted 92: =============================================================================== 92: All tests passed (21562 assertions in 3 test cases) 92: 85/246 Test #92: multithreadedSupplierCatchTest ......... Passed 2.30 sec test 93 Start 93: testSubstructMatch 93: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct/testSubstructMatch 93: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct 93: Test timeout computed to be: 7200 93: ----------------- Test 1 93: Done 93: 93: ----------------- Test 2 93: Done 93: 93: ----------------- Test 3 93: Done 93: 93: ----------------- Test 4 93: Done 93: 93: ----------------- Test 5 93: Done 93: 93: ----------------- Test 5 QueryRoot 93: Done 93: 93: ----------------- Test 6 (Issue71 related) 93: Done 93: 93: ----------------- Testing serial numbers on recursive queries 93: Done 93: 93: [04:01:39] ------------------------------------- 93: [04:01:39] Test multithreading 93: reading molecules 93: hits: 1111110111111111111111011111100011011011111101010111011110111101111111111111111111111011111011111110 93: processing 93: launch :0 93: launch :1 93: launch :2 93: launch :3 93: done 93: hits2: 1111110111111111111111011111100011011011111101010111011110111101111111111111111111111011111011111110 93: processing2 93: launch2 :0 93: launch2 :1 93: launch2 :2 93: launch2 :3 93: done 93: preprocessing 3 93: hits3: 1110100011001000010011100110100011011000010101000100110010101111011100101000001111110000010100100110 93: processing3 93: launch3 :0 93: launch3 :1 93: launch3 :2 93: launch3 :3 93: done 93: [04:01:40] done 93: [04:01:40] ------------------------------------- 93: [04:01:40] Test GitHub issue 15 93: [04:01:40] done 93: [04:01:40] ------------------------------------- 93: [04:01:40] Test GitHub issue 409 93: [04:01:40] done 93: [04:01:40] ------------------------------------- 93: [04:01:40] Test chiral matching 93: [04:01:40] done 93: [04:01:40] ------------------------------------- 93: [04:01:40] Test GitHub issue 688: partially specified chiral substructure queries don't work properly 93: [04:01:40] done 93: [04:01:40] ------------------------------------- 93: [04:01:40] Test dative-bond matching 93: [04:01:40] done 93: [04:01:40] ------------------------------------- 93: [04:01:40] Test cis/trans matching 93: [04:01:40] done 93: [04:01:40] ------------------------------------- 93: [04:01:40] Test cis/trans matching part 2 93: [04:01:40] done 93: [04:01:40] ------------------------------------- 93: [04:01:40] Testing Github #1389: Substructure matching with chirality failure when query is built from SMARTS 93: [04:01:40] done 93: [04:01:40] ------------------------------------- 93: [04:01:40] Testing matching E/Z against Cis/Trans stereo bonds 93: [04:01:40] 93: 93: **** 93: Pre-condition Violation 93: matches must not be empty 93: Violation occurred on line 43 in file ./Code/GraphMol/Substruct/SubstructUtils.cpp 93: Failed Expression: !matches.empty() 93: ---------- 93: Stacktrace: 93: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 93: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 93: 2# RDKit::detail::ScoreMatchesByDegreeOfCoreSubstitution::ScoreMatchesByDegreeOfCoreSubstitution(RDKit::ROMol const&, RDKit::ROMol const&, std::vector, std::allocator > >, std::allocator, std::allocator > > > > const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 93: 3# RDKit::getMostSubstitutedCoreMatch(RDKit::ROMol const&, RDKit::ROMol const&, std::vector, std::allocator > >, std::allocator, std::allocator > > > > const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 93: 4# 0x0000000117FCF060 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct/testSubstructMatch 93: 5# 0x0000000117FB9BFC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct/testSubstructMatch 93: 6# 0x00007FFF8DC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 93: 7# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 93: ---------- 93: **** 93: 93: [04:01:40] 93: 93: **** 93: Pre-condition Violation 93: matches must not be empty 93: Violation occurred on line 43 in file ./Code/GraphMol/Substruct/SubstructUtils.cpp 93: Failed Expression: !matches.empty() 93: ---------- 93: Stacktrace: 93: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 93: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 93: 2# RDKit::detail::ScoreMatchesByDegreeOfCoreSubstitution::ScoreMatchesByDegreeOfCoreSubstitution(RDKit::ROMol const&, RDKit::ROMol const&, std::vector, std::allocator > >, std::allocator, std::allocator > > > > const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 93: 3# RDKit::sortMatchesByDegreeOfCoreSubstitution(RDKit::ROMol const&, RDKit::ROMol const&, std::vector, std::allocator > >, std::allocator, std::allocator > > > > const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 93: 4# 0x0000000117FCF698 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct/testSubstructMatch 93: 5# 0x0000000117FB9BFC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct/testSubstructMatch 93: 6# 0x00007FFF8DC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 93: 7# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 93: ---------- 93: **** 93: 93: [04:01:40] ------------------------------------- 93: [04:01:40] Test substructure matching with a pathological case for symmetric SSSR 93: [04:01:40] ------------------------------------- 93: [04:01:40] Test isAtomTerminalRGroupOrQueryHydrogen 86/246 Test #93: testSubstructMatch ..................... Passed 0.38 sec test 94 Start 94: substructTestCatch 94: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct/substructTestCatch 94: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Substruct 94: Test timeout computed to be: 7200 94: Randomness seeded to: 3882732661 94: =============================================================================== 94: All tests passed (262 assertions in 13 test cases) 94: 87/246 Test #94: substructTestCatch ..................... Passed 0.42 sec test 95 Start 95: testGenericGroups 95: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups/testGenericGroups 95: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GenericGroups 95: Test timeout computed to be: 7200 95: Randomness seeded to: 3691256189 95: =============================================================================== 95: All tests passed (11480 assertions in 38 test cases) 95: 88/246 Test #95: testGenericGroups ...................... Passed 0.57 sec test 96 Start 96: testReaction 96: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/testReaction 96: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions 96: Test timeout computed to be: 7200 96: smi: O=C1CNC(=O)CN1 96: 1: O=C1CNC(=O)CN1 96: 2: COOC 96: [04:01:41] SMARTS Parse Error: syntax error while parsing: [Q:1][C:2][C:3](=[O:4])[O:5] 96: [04:01:41] SMARTS Parse Error: check for mistakes around position 2: 96: [04:01:41] [Q:1][C:2][C:3](=[O:4])[O:5] 96: [04:01:41] ~^ 96: [04:01:41] SMARTS Parse Error: Failed parsing SMARTS '[Q:1][C:2][C:3](=[O:4])[O:5]' for input: '[Q:1][C:2][C:3](=[O:4])[O:5]' 96: O=C1CNC(=O)CN1 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] mapped atoms in the reactants were not mapped in the products. 96: unmapped numbers are: 4 96: [04:01:41] atom 0 in product 0 has multiple charge specifications. 96: mass: 15.0001 96: Oc1ccccn1 96: Oc1ccc[nH]1 96: [04:01:41] SMARTS Parse Error: syntax error while parsing: ([C:1](=O)O.[C:2] 96: [04:01:41] SMARTS Parse Error: check for mistakes around position 1: 96: [04:01:41] ([C:1](=O)O.[C:2] 96: [04:01:41] ^ 96: [04:01:41] SMARTS Parse Error: Failed parsing SMARTS '([C:1](=O)O.[C:2]' for input: '([C:1](=O)O.[C:2]' 96: [04:01:41] SMARTS Parse Error: syntax error while parsing: ([C:2] 96: [04:01:41] SMARTS Parse Error: check for mistakes around position 1: 96: [04:01:41] ([C:2] 96: [04:01:41] ^ 96: [04:01:41] SMARTS Parse Error: Failed parsing SMARTS '([C:2]' for input: '([C:2]' 96: [04:01:41] SMARTS Parse Error: syntax error while parsing: [C:1](=O)O).[C:2] 96: [04:01:41] SMARTS Parse Error: check for mistakes around position 11: 96: [04:01:41] [C:1](=O)O).[C:2] 96: [04:01:41] ~~~~~~~~~~^ 96: [04:01:41] SMARTS Parse Error: Failed parsing SMARTS '[C:1](=O)O).[C:2]' for input: '[C:1](=O)O).[C:2]' 96: [04:01:41] SMARTS Parse Error: syntax error while parsing: [C:2]) 96: [04:01:41] SMARTS Parse Error: check for mistakes around position 6: 96: [04:01:41] [C:2]) 96: [04:01:41] ~~~~~^ 96: [04:01:41] SMARTS Parse Error: Failed parsing SMARTS '[C:2])' for input: '[C:2])' 96: [04:01:41] SMILES Parse Error: syntax error while parsing: [Q:1][C:2][C:3](=[O:4])[O:5] 96: [04:01:41] SMILES Parse Error: check for mistakes around position 2: 96: [04:01:41] [Q:1][C:2][C:3](=[O:4])[O:5] 96: [04:01:41] ~^ 96: [04:01:41] SMILES Parse Error: Failed parsing SMILES '[Q:1][C:2][C:3](=[O:4])[O:5]' for input: '[Q:1][C:2][C:3](=[O:4])[O:5]' 96: [04:01:41] reactant 2 has no mapped atoms. 96: [04:01:41] >> Atoms within one molecule have different RXN roles. 96: [04:01:41] >> Fragment 0 not included in the reaction, atoms do not have a correct RXN role. 96: [04:01:41] SMARTS Parse Error: syntax error while parsing: ([C:1][C:2] 96: [04:01:41] SMARTS Parse Error: check for mistakes around position 1: 96: [04:01:41] ([C:1][C:2] 96: [04:01:41] ^ 96: [04:01:41] SMARTS Parse Error: Failed parsing SMARTS '([C:1][C:2]' for input: '([C:1][C:2]' 96: [04:01:41] SMARTS Parse Error: syntax error while parsing: ([C:2] 96: [04:01:41] SMARTS Parse Error: check for mistakes around position 1: 96: [04:01:41] ([C:2] 96: [04:01:41] ^ 96: [04:01:41] SMARTS Parse Error: Failed parsing SMARTS '([C:2]' for input: '([C:2]' 96: [04:01:41] SMARTS Parse Error: syntax error while parsing: [C:1][C:2]) 96: [04:01:41] SMARTS Parse Error: check for mistakes around position 11: 96: [04:01:41] [C:1][C:2]) 96: [04:01:41] ~~~~~~~~~~^ 96: [04:01:41] SMARTS Parse Error: Failed parsing SMARTS '[C:1][C:2])' for input: '[C:1][C:2])' 96: [04:01:41] SMARTS Parse Error: syntax error while parsing: [C:1]).[C:2] 96: [04:01:41] SMARTS Parse Error: check for mistakes around position 6: 96: [04:01:41] [C:1]).[C:2] 96: [04:01:41] ~~~~~^ 96: [04:01:41] SMARTS Parse Error: Failed parsing SMARTS '[C:1]).[C:2]' for input: '[C:1]).[C:2]' 96: [04:01:41] reactant 0 has no mapped atoms. 96: [04:01:41] reactant 1 has no mapped atoms. 96: [04:01:41] reactant 3 has no mapped atoms. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: [04:01:41] product atom-mapping number 5 found multiple times. 96: [04:01:41] product atom-mapping number 6 found multiple times. 96: [04:01:41] product atom-mapping number 7 found multiple times. 96: [04:01:41] product atom-mapping number 8 found multiple times. 96: [04:01:41] product atom-mapping number 12 found multiple times. 96: [04:01:41] product atom-mapping number 9 found multiple times. 96: [04:01:41] product atom-mapping number 10 found multiple times. 96: [04:01:41] product atom-mapping number 11 found multiple times. 96: [04:01:41] reactant 0 has no mapped atoms. 96: [04:01:41] reactant 1 has no mapped atoms. 96: [04:01:41] reactant 3 has no mapped atoms. 96: [04:01:41] reactant atom-mapping number 19 found multiple times. 96: [04:01:41] reactant atom-mapping number 25 found multiple times. 96: [04:01:41] reactant atom-mapping number 20 found multiple times. 96: [04:01:41] reactant atom-mapping number 21 found multiple times. 96: [04:01:41] reactant atom-mapping number 22 found multiple times. 96: [04:01:41] reactant atom-mapping number 23 found multiple times. 96: [04:01:41] reactant atom-mapping number 24 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: F[C@](Cl)(Br)ONO[C@](F)(Cl)Br 96: [04:01:41] product atom-mapping number 5 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: [04:01:41] product atom-mapping number 5 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br 96: [04:01:41] product atom-mapping number 5 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: [04:01:41] product atom-mapping number 5 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: F[C@](Cl)(Br)ONO[C@](F)(Cl)Br 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: F[C@@](Cl)(Br)O[C@](F)(Cl)Br 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: F[C@](Cl)(Br)O[C@](F)(Cl)Br 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 4 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] mapped atoms in the reactants were not mapped in the products. 96: unmapped numbers are: 4 96: [04:01:41] product atom-mapping number 3 found multiple times. 96: [04:01:41] product atom-mapping number 2 found multiple times. 96: [04:01:41] product atom-mapping number 1 found multiple times. 96: [04:01:41] mapped atoms in the reactants were not mapped in the products. 96: unmapped numbers are: 4 96: [04:01:41] product atom-mapping number 6 not found in reactants. 96: [04:01:41] product atom-mapping number 7 not found in reactants. 96: [04:01:41] product atom-mapping number 8 not found in reactants. 96: [04:01:41] product atom-mapping number 7 not found in reactants. 96: [04:01:41] product atom-mapping number 8 not found in reactants. 96: [04:01:41] product atom-mapping number 9 not found in reactants. 96: [04:01:41] product atom-mapping number 10 not found in reactants. 96: [04:01:41] mapped atoms in the reactants were not mapped in the products. 96: unmapped numbers are: 6 96: [04:01:41] product atom-mapping number 7 not found in reactants. 96: [04:01:41] product atom-mapping number 8 not found in reactants. 96: [04:01:41] product atom-mapping number 9 not found in reactants. 96: [04:01:41] product atom-mapping number 10 not found in reactants. 96: [04:01:41] mapped atoms in the reactants were not mapped in the products. 96: unmapped numbers are: 6 96: smi1 [C:1][C:2][C:3]([O:4])([N:5])[Cl:6]>>[C:1][C:3]([C:2])([O:4])[N:5].[ClH:6] 96: smi2 [C:1][C:2][C:3]([O:4])([N:5])[Cl:6]>>[C:1][C:3]([C:2])([O:4])[N:5].[ClH:6] 96: [04:01:41] mapped atoms in the reactants were not mapped in the products. 96: unmapped numbers are: 7 8 9 10 11 12 13 14 15 16 96: [04:01:41] product atom-mapping number 17 not found in reactants. 96: [04:01:41] product atom-mapping number 18 not found in reactants. 96: [04:01:41] mapped atoms in the reactants were not mapped in the products. 96: unmapped numbers are: 12 96: [04:01:41] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs) 96: [04:01:41] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs) 96: 96: [04:01:41] Mismatched potential rlabels: 1 unmapped reactant dummy atom rlabels,0 unmappped product dummy atom rlabels 96: ------------- 96: CCOc1ccccc1 96: [04:01:42] reactant 0 has no mapped atoms. 96: [04:01:42] product 0 has no mapped atoms. 96: [04:01:42] WARNING: neither stereo atoms nor CIP codes found for double bond. Stereochemistry info will not be propagated to product. 89/246 Test #96: testReaction ........................... Passed 0.79 sec test 97 Start 97: testReactionFingerprints 97: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/testReactionFingerprints 97: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions 97: Test timeout computed to be: 7200 97: [04:01:42] ------------------------------------- 97: [04:01:42] Test Reaction StructuralFingerprint 97: [04:01:42] ------------------------------------- 97: [04:01:42] Test Reaction DifferenceFingerprint 90/246 Test #97: testReactionFingerprints ............... Passed 0.07 sec test 98 Start 98: testEnumeration 98: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/testEnumeration 98: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions 98: Test timeout computed to be: 7200 98: 30000000 30000000 76: [04:01:42] Finished: testSmiCorrectness() 76: [04:01:42] ----------------------------------------- 76: 76: [04:01:42] 76: ----------------------------------------- 76: [04:01:42] Spurious data before the first property will be ignored 76: [04:01:42] Property will be truncated after the first blank line 76: [04:01:42] Property will be truncated after the first blank line 76: [04:01:42] Property will be truncated after the first blank line 83: Randomness seeded to: 902839566 83: [04:01:43] 3D constraint information in mol block ignored at line 46 83: [04:01:43] 3D constraint information in mol block ignored at line 46 83: [04:01:43] 3D constraint information in mol block ignored at line 58 83: [04:01:43] 3D constraint information in mol block ignored at line 58 83: [04:01:43] 3D constraint information in mol block ignored at line 46 83: =============================================================================== 83: All tests passed (315 assertions in 3 test cases) 83: 91/246 Test #83: macromolsCatchTest ..................... Passed 7.41 sec test 99 Start 99: rxnTestCatch 99: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/rxnTestCatch 99: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions 99: Test timeout computed to be: 7200 99: Randomness seeded to: 4053387442 99: [04:01:43] atom 0 in product 0 has multiple charge specifications. 99: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 34 99: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 36 99: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 38 99: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 40 99: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 42 99: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 87 99: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 89 99: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 91 99: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 93 99: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 95 99: [04:01:43] mapped atoms in the reactants were not mapped in the products. 99: unmapped numbers are: 2 99: [04:01:43] mapped atoms in the reactants were not mapped in the products. 99: unmapped numbers are: 2 99: [04:01:43] SMARTS Parse Error: unclosed ring for input: 'CC1' 99: [04:01:43] SMILES Parse Error: unclosed ring for input: 'CC1' 99: [04:01:43] mapped atoms in the reactants were not mapped in the products. 99: unmapped numbers are: 2 99: [04:01:43] product atom-mapping number 2 not found in reactants. 99: [04:01:43] mapped atoms in the reactants were not mapped in the products. 99: unmapped numbers are: 2 99: [04:01:43] product atom-mapping number 2 not found in reactants. 99: [04:01:43] CX Extensions: Substance group hierarchy is not always preserved. 99: [04:01:43] CX Extensions: Substance group hierarchy is not always preserved. 99: [04:01:43] reactant 0 has no mapped atoms. 99: [04:01:43] product 0 has no mapped atoms. 99: [04:01:43] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 99: [04:01:43] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 99: [04:01:43] Explicit valence for atom # 1 O, 5, is greater than permitted 99: =============================================================================== 99: All tests passed (722 assertions in 30 test cases) 99: 92/246 Test #99: rxnTestCatch ........................... Passed 0.08 sec test 100 Start 100: pyChemReactions 100: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py" 100: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/Wrap 100: Test timeout computed to be: 7200 76: [04:01:43] Finished: testSDCorrectness() 76: [04:01:43] ----------------------------------------- 76: 76: [04:01:43] 76: ----------------------------------------- 76: [04:01:43] Finished: testThrowSDF() 76: [04:01:43] ----------------------------------------- 76: 76: [04:01:43] 76: ----------------------------------------- 76: [04:01:43] Finished: testThrowSmiles() 76: [04:01:43] ----------------------------------------- 76: 93/246 Test #76: testMultithreadedMolSupplier ........... Passed 8.15 sec test 101 Start 101: pyChemReactionEnumerations 101: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/testEnumerations.py" 101: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/Wrap 101: Test timeout computed to be: 7200 100: ...[04:01:43] 100: 100: **** 100: Pre-condition Violation 100: getNumImplicitHs() called without preceding call to calcImplicitValence() 100: Violation occurred on line 301 in file ./Code/GraphMol/Atom.cpp 100: Failed Expression: d_implicitValence > -1 100: ---------- 100: Stacktrace: 100: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 100: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 100: 2# RDKit::Atom::getNumImplicitHs() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 3# RDKit::Atom::getTotalNumHs(bool) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 4# 0x00007FFF8B2F00BC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 5# 0x00007FFF8BD4FABC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSmilesParse.so.1 100: 6# Queries::EqualityQuery::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSmilesParse.so.1 100: 7# Queries::AndQuery::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 8# Queries::AndQuery::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 9# Queries::OrQuery::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 10# RDKit::QueryAtom::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 11# RDKit::atomCompat(RDKit::Atom const*, RDKit::Atom const*, RDKit::SubstructMatchParameters const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 12# boost::detail::VF2SubState const, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor>::IsFeasiblePair(unsigned int, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 13# bool boost::detail::VF2SubState const, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor>::MatchAll, std::allocator > >, std::allocator, std::allocator > > > > >(unsigned int*, unsigned int*, std::vector, std::allocator > >, std::allocator, std::allocator > > > >&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 14# bool boost::vf2_all, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >(boost::adjacency_list const&, boost::adjacency_list const&, RDKit::detail::AtomLabelFunctor&, RDKit::detail::BondLabelFunctor&, RDKit::MolMatchFinalCheckFunctor&, std::vector, std::allocator > >, std::allocator, std::allocator > > > >&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 15# RDKit::detail::RecursiveMatcher(RDKit::ROMol const&, RDKit::ROMol const&, std::vector >&, std::map*, std::less, std::allocator*> > >&, RDKit::SubstructMatchParameters const&, std::vector >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 16# RDKit::detail::MatchSubqueries(RDKit::ROMol const&, Queries::Query*, RDKit::SubstructMatchParameters const&, std::map*, std::less, std::allocator*> > >&, std::vector >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 17# RDKit::detail::MatchSubqueries(RDKit::ROMol const&, Queries::Query*, RDKit::SubstructMatchParameters const&, std::map*, std::less, std::allocator*> > >&, std::vector >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 18# RDKit::detail::MatchSubqueries(RDKit::ROMol const&, Queries::Query*, RDKit::SubstructMatchParameters const&, std::map*, std::less, std::allocator*> > >&, std::vector >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 19# RDKit::detail::MatchSubqueries(RDKit::ROMol const&, Queries::Query*, RDKit::SubstructMatchParameters const&, std::map*, std::less, std::allocator*> > >&, std::vector >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 20# RDKit::SubstructMatch(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::SubstructMatchParameters const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 21# RDKit::ReactionRunnerUtils::getReactantMatchesToTemplate(RDKit::ROMol const&, RDKit::ROMol const&, unsigned int, RDKit::SubstructMatchParameters const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemReactions.so.1 100: 22# RDKit::ReactionRunnerUtils::getReactantMatches(std::vector, std::allocator > > const&, RDKit::ChemicalReaction const&, std::vector, std::allocator > >, std::allocator, std::allocator > > > >, std::allocator, std::allocator > >, std::allocator, std::allocator > > > > > >&, unsigned int, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemReactions.so.1 100: 23# RDKit::run_Reactants(RDKit::ChemicalReaction const&, std::vector, std::allocator > > const&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemReactions.so.1 100: 24# RDKit::ChemicalReaction::runReactants(std::vector, std::allocator > >, unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemReactions.so.1 100: 25# _object* RDKit::RunReactants(RDKit::ChemicalReaction*, boost::python::tuple, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 100: 26# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 100: 27# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 28# 0x00007FFF8DBCAD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 30# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 100: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 32# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 100: 33# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 34# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 100: 35# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 36# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 100: 37# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 38# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 100: 39# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 40# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 100: 41# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 42# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 100: 43# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 44# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 100: 45# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 46# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 47# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 48# 0x00007FFF8B7A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 49# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 50# 0x00007FFF8B7A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 51# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 52# 0x00007FFF8B7A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 53# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 54# 0x00007FFF8B7A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 55# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 56# 0x00007FFF8B7A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 57# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 58# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 100: 59# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 60# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 100: 61# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 62# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 100: 63# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 64# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 100: 65# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 66# 0x00007FFF8DBC6264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 67# _PyObject_MakeTpCall in /usr/bin/python3 100: 68# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 69# 0x0000000010162EE0 in /usr/bin/python3 100: 70# 0x00000000101B9704 in /usr/bin/python3 100: 71# 0x0000000010181FB4 in /usr/bin/python3 100: 72# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 73# 0x000000001030064C in /usr/bin/python3 100: 74# 0x0000000010258FE4 in /usr/bin/python3 100: 75# _PyObject_MakeTpCall in /usr/bin/python3 100: 76# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 77# 0x0000000010162EE0 in /usr/bin/python3 100: 78# 0x00000000101B9704 in /usr/bin/python3 100: 79# 0x0000000010181FB4 in /usr/bin/python3 100: 80# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 81# 0x000000001030064C in /usr/bin/python3 100: 82# 0x0000000010258FE4 in /usr/bin/python3 100: 83# _PyObject_MakeTpCall in /usr/bin/python3 100: 84# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 85# 0x0000000010162EE0 in /usr/bin/python3 100: 86# 0x00000000101B9704 in /usr/bin/python3 100: 87# 0x0000000010181FB4 in /usr/bin/python3 100: 88# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 89# 0x000000001030064C in /usr/bin/python3 100: 90# 0x0000000010258FE4 in /usr/bin/python3 100: 91# _PyObject_MakeTpCall in /usr/bin/python3 100: 92# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 93# 0x0000000010162EE0 in /usr/bin/python3 100: 94# 0x000000001016FA04 in /usr/bin/python3 100: 95# _PyObject_MakeTpCall in /usr/bin/python3 100: 96# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 97# PyEval_EvalCode in /usr/bin/python3 100: 98# 0x000000001032E06C in /usr/bin/python3 100: 99# 0x000000001032844C in /usr/bin/python3 100: 100# 0x00000000103689CC in /usr/bin/python3 100: 101# 0x00000000103680D0 in /usr/bin/python3 100: 102# 0x0000000010367DA4 in /usr/bin/python3 100: 103# Py_RunMain in /usr/bin/python3 100: 104# 0x00000000102E95E8 in /usr/bin/python3 100: 105# Py_BytesMain in /usr/bin/python3 100: 106# 0x00007FFF8E627224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 100: 107# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 100: ---------- 100: **** 100: 100: [04:01:43] 100: 100: **** 100: Pre-condition Violation 100: getNumImplicitHs() called without preceding call to calcImplicitValence() 100: Violation occurred on line 301 in file ./Code/GraphMol/Atom.cpp 100: Failed Expression: d_implicitValence > -1 100: ---------- 100: Stacktrace: 100: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 100: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 100: 2# RDKit::Atom::getNumImplicitHs() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 3# RDKit::Atom::getTotalNumHs(bool) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 4# 0x00007FFF8B2F00BC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 5# 0x00007FFF8BD4FABC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSmilesParse.so.1 100: 6# Queries::EqualityQuery::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSmilesParse.so.1 100: 7# Queries::AndQuery::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 8# Queries::AndQuery::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 9# Queries::OrQuery::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 10# RDKit::QueryAtom::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 100: 11# RDKit::atomCompat(RDKit::Atom const*, RDKit::Atom const*, RDKit::SubstructMatchParameters const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 12# boost::detail::VF2SubState const, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor>::IsFeasiblePair(unsigned int, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 13# bool boost::detail::VF2SubState const, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor>::MatchAll, std::allocator > >, std::allocator, std::allocator > > > > >(unsigned int*, unsigned int*, std::vector, std::allocator > >, std::allocator, std::allocator > > > >&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 14# bool boost::vf2_all, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >(boost::adjacency_list const&, boost::adjacency_list const&, RDKit::detail::AtomLabelFunctor&, RDKit::detail::BondLabelFunctor&, RDKit::MolMatchFinalCheckFunctor&, std::vector, std::allocator > >, std::allocator, std::allocator > > > >&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 15# RDKit::detail::RecursiveMatcher(RDKit::ROMol const&, RDKit::ROMol const&, std::vector >&, std::map*, std::less, std::allocator*> > >&, RDKit::SubstructMatchParameters const&, std::vector >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 16# RDKit::detail::MatchSubqueries(RDKit::ROMol const&, Queries::Query*, RDKit::SubstructMatchParameters const&, std::map*, std::less, std::allocator*> > >&, std::vector >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 17# RDKit::detail::MatchSubqueries(RDKit::ROMol const&, Queries::Query*, RDKit::SubstructMatchParameters const&, std::map*, std::less, std::allocator*> > >&, std::vector >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 18# RDKit::detail::MatchSubqueries(RDKit::ROMol const&, Queries::Query*, RDKit::SubstructMatchParameters const&, std::map*, std::less, std::allocator*> > >&, std::vector >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 19# RDKit::detail::MatchSubqueries(RDKit::ROMol const&, Queries::Query*, RDKit::SubstructMatchParameters const&, std::map*, std::less, std::allocator*> > >&, std::vector >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 20# RDKit::SubstructMatch(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::SubstructMatchParameters const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 100: 21# RDKit::ReactionRunnerUtils::getReactantMatchesToTemplate(RDKit::ROMol const&, RDKit::ROMol const&, unsigned int, RDKit::SubstructMatchParameters const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemReactions.so.1 100: 22# RDKit::ReactionRunnerUtils::getReactantMatches(std::vector, std::allocator > > const&, RDKit::ChemicalReaction const&, std::vector, std::allocator > >, std::allocator, std::allocator > > > >, std::allocator, std::allocator > >, std::allocator, std::allocator > > > > > >&, unsigned int, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemReactions.so.1 100: 23# RDKit::run_Reactants(RDKit::ChemicalReaction const&, std::vector, std::allocator > > const&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemReactions.so.1 100: 24# RDKit::ChemicalReaction::runReactants(std::vector, std::allocator > >, unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemReactions.so.1 100: 25# _object* RDKit::RunReactants(RDKit::ChemicalReaction*, boost::python::tuple, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 100: 26# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 100: 27# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 28# 0x00007FFF8DBCAD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 30# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 100: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 32# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 100: 33# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 34# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 100: 35# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 36# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 100: 37# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 38# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 100: 39# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 40# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 100: 41# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 42# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 100: 43# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 44# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 100: 45# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 46# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 47# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 48# 0x00007FFF8B7A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 49# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 50# 0x00007FFF8B7A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 51# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 52# 0x00007FFF8B7A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 53# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 54# 0x00007FFF8B7A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 55# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 56# 0x00007FFF8B7A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 100: 57# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 58# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 100: 59# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 60# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 100: 61# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 62# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 100: 63# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 64# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 100: 65# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 66# 0x00007FFF8DBC6264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 100: 67# _PyObject_MakeTpCall in /usr/bin/python3 100: 68# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 69# 0x0000000010162EE0 in /usr/bin/python3 100: 70# 0x00000000101B9704 in /usr/bin/python3 100: 71# 0x0000000010181FB4 in /usr/bin/python3 100: 72# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 73# 0x000000001030064C in /usr/bin/python3 100: 74# 0x0000000010258FE4 in /usr/bin/python3 100: 75# _PyObject_MakeTpCall in /usr/bin/python3 100: 76# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 77# 0x0000000010162EE0 in /usr/bin/python3 100: 78# 0x00000000101B9704 in /usr/bin/python3 100: 79# 0x0000000010181FB4 in /usr/bin/python3 100: 80# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 81# 0x000000001030064C in /usr/bin/python3 100: 82# 0x0000000010258FE4 in /usr/bin/python3 100: 83# _PyObject_MakeTpCall in /usr/bin/python3 100: 84# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 85# 0x0000000010162EE0 in /usr/bin/python3 100: 86# 0x00000000101B9704 in /usr/bin/python3 100: 87# 0x0000000010181FB4 in /usr/bin/python3 100: 88# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 89# 0x000000001030064C in /usr/bin/python3 100: 90# 0x0000000010258FE4 in /usr/bin/python3 100: 91# _PyObject_MakeTpCall in /usr/bin/python3 100: 92# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 93# 0x0000000010162EE0 in /usr/bin/python3 100: 94# 0x000000001016FA04 in /usr/bin/python3 100: 95# _PyObject_MakeTpCall in /usr/bin/python3 100: 96# _PyEval_EvalFrameDefault in /usr/bin/python3 100: 97# PyEval_EvalCode in /usr/bin/python3 100: 98# 0x000000001032E06C in /usr/bin/python3 100: 99# 0x000000001032844C in /usr/bin/python3 100: 100# 0x00000000103689CC in /usr/bin/python3 100: 101# 0x00000000103680D0 in /usr/bin/python3 100: 102# 0x0000000010367DA4 in /usr/bin/python3 100: 103# Py_RunMain in /usr/bin/python3 100: 104# 0x00000000102E95E8 in /usr/bin/python3 100: 105# Py_BytesMain in /usr/bin/python3 100: 106# 0x00007FFF8E627224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 100: 107# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 100: ---------- 100: **** 100: 100: .........[04:01:43] stereo atoms in input cannot be mapped to output (atoms are no longer bonded) 100: [04:01:43] stereo atoms in input cannot be mapped to output (atoms are no longer bonded) 100: [04:01:43] stereo atoms in input cannot be mapped to output (atoms are no longer bonded) 100: [04:01:43] stereo atoms in input cannot be mapped to output (atoms are no longer bonded) 100: .[04:01:43] product atom-mapping number 1 found multiple times. 100: [04:01:43] product atom-mapping number 1 found multiple times. 100: ................[04:01:43] mapped atoms in the reactants were not mapped in the products. 100: unmapped numbers are: 3 100: [04:01:43] mapped atoms in the reactants were not mapped in the products. 100: unmapped numbers are: 3 100: .:488: RuntimeWarning: to-Python converter for boost::shared_ptr already registered; second conversion method ignored. 100: [04:01:43] mapped atoms in the reactants were not mapped in the products. 100: unmapped numbers are: 3 100: ..[04:01:43] reactant 2 has no mapped atoms. 100: [04:01:43] reactant 2 has no mapped atoms. 100: [04:01:43] product 1 has no mapped atoms. 100: ........[04:01:43] SMARTS Parse Error: syntax error while parsing: [C:1](=[O:2])Q 100: [04:01:43] SMARTS Parse Error: check for mistakes around position 14: 100: [04:01:43] [C:1](=[O:2])Q 100: [04:01:43] ~~~~~~~~~~~~~^ 100: [04:01:43] SMARTS Parse Error: Failed parsing SMARTS '[C:1](=[O:2])Q' for input: '[C:1](=[O:2])Q' 100: [04:01:43] SMARTS Parse Error: syntax error while parsing: [C:1](=[O:2])[N:3]Q 100: [04:01:43] SMARTS Parse Error: check for mistakes around position 19: 100: [04:01:43] [C:1](=[O:2])[N:3]Q 100: [04:01:43] ~~~~~~~~~~~~~~~~~~^ 100: [04:01:43] SMARTS Parse Error: Failed parsing SMARTS '[C:1](=[O:2])[N:3]Q' for input: '[C:1](=[O:2])[N:3]Q' 100: .[04:01:43] reactant atom-mapping number 1 found multiple times. 100: [04:01:43] product atom-mapping number 2 not found in reactants. 100: [04:01:43] mapped atoms in the reactants were not mapped in the products. 100: unmapped numbers are: 4 100: [04:01:43] product atom-mapping number 5 not found in reactants. 100: ........./build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py:745: ResourceWarning: unclosed file <_io.BufferedReader name='/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/testData/reaction1.no_metadata.png'> 100: png = open(fname, 'rb').read() 100: ResourceWarning: Enable tracemalloc to get the object allocation traceback 100: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 34 100: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 36 100: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 38 100: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 40 100: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 42 100: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 87 100: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 89 100: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 91 100: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 93 100: [04:01:43] Found a SCD/SED line with missing/empty SDT specification at line 95 100: ..[04:01:43] SMARTS Parse Error: syntax error while parsing: boromicacid 100: [04:01:43] SMARTS Parse Error: check for mistakes around position 3: 100: [04:01:43] boromicacid 100: [04:01:43] ~~^ 100: [04:01:43] SMARTS Parse Error: Failed parsing SMARTS 'boromicacid' for input: 'boromicacid' 100: [04:01:43] SMARTS Parse Error: syntax error while parsing: carboxylicacid,acidchlroide 100: [04:01:43] SMARTS Parse Error: check for mistakes around position 3: 100: [04:01:43] carboxylicacid,acidchlroide 100: [04:01:43] ~~^ 100: [04:01:43] SMARTS Parse Error: Failed parsing SMARTS 'carboxylicacid,acidchlroide' for input: 'carboxylicacid,acidchlroide' 100: [04:01:43] SMARTS Parse Error: syntax error while parsing: carboxyliccaid,acidchloride 100: [04:01:43] SMARTS Parse Error: check for mistakes around position 3: 100: [04:01:43] carboxyliccaid,acidchloride 100: [04:01:43] ~~^ 100: [04:01:43] SMARTS Parse Error: Failed parsing SMARTS 'carboxyliccaid,acidchloride' for input: 'carboxyliccaid,acidchloride' 100: [04:01:43] reaction has no reactants 100: [04:01:43] reaction has no products 100: [04:01:43] initialization failed 100: [04:01:43] reaction has no reactants 100: [04:01:43] reaction has no products 100: .[04:01:43] SMARTS Parse Error: syntax error while parsing: boromicacid 100: [04:01:43] SMARTS Parse Error: check for mistakes around position 3: 100: [04:01:43] boromicacid 100: [04:01:43] ~~^ 100: [04:01:43] SMARTS Parse Error: Failed parsing SMARTS 'boromicacid' for input: 'boromicacid' 100: [04:01:43] SMARTS Parse Error: syntax error while parsing: carboxylicacid,acidchlroide 100: [04:01:43] SMARTS Parse Error: check for mistakes around position 3: 100: [04:01:43] carboxylicacid,acidchlroide 100: [04:01:43] ~~^ 100: [04:01:43] SMARTS Parse Error: Failed parsing SMARTS 'carboxylicacid,acidchlroide' for input: 'carboxylicacid,acidchlroide' 100: [04:01:43] SMARTS Parse Error: syntax error while parsing: carboxyliccaid,acidchloride 100: [04:01:43] SMARTS Parse Error: check for mistakes around position 3: 100: [04:01:43] carboxyliccaid,acidchloride 100: [04:01:43] ~~^ 100: [04:01:43] SMARTS Parse Error: Failed parsing SMARTS 'carboxyliccaid,acidchloride' for input: 'carboxyliccaid,acidchloride' 100: [04:01:43] reaction has no reactants 100: [04:01:43] reaction has no products 100: [04:01:43] initialization failed 100: [04:01:43] reaction has no reactants 100: [04:01:43] reaction has no products 100: . 100: ---------------------------------------------------------------------- 100: Ran 54 tests in 0.177s 100: 100: OK 100: ******************************************** 100: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/testData/AmideBond.rxn 100: 101: [04:01:43] == testCartesianProduct 101: .[04:01:43] == testEnumerateLibrary 101: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/testEnumerations.py:266: ResourceWarning: unclosed file <_io.BufferedReader name='/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/testData/enumeration.pickle'> 101: open(os.path.join(self.dataDir, "enumeration.pickle"), 'rb').read()) 101: ResourceWarning: Enable tracemalloc to get the object allocation traceback 101: ..[04:01:43] == testRGroupState 94/246 Test #100: pyChemReactions ........................ Passed 0.54 sec test 102 Start 102: pyChemReactionSanitize 102: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ChemReactions/Wrap/testSanitize.py" 102: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemReactions/Wrap 102: Test timeout computed to be: 7200 101: .[04:01:43] == testRandomEnumerateAllBBsLibrary 101: ** [1, 1] 101: ** [0, 2] 101: ** [1, 0] 101: .[04:01:43] == testRandomEnumerateLibrary 101: .[04:01:43] == testRandomSample 101: .[04:01:43] == testRandomSampleAllBBs 101: .[04:01:43] deprecated -- please use MatchOnlyAtRgroupsAdjustParams instead 101: [04:01:43] deprecated -- please use MatchOnlyAtRgroupsAdjustParams instead 101: .[04:01:43] == testRemoveBadMatches 101: .[04:01:43] == testTimings 102: .[04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: .[04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] reactant 0 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] product 0 has no mapped atoms. 102: [04:01:44] Could not find RLabel mapping for atom: 0 in template: 1 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: [04:01:44] reactant 1 has no mapped atoms. 102: .. 102: ---------------------------------------------------------------------- 102: Ran 4 tests in 0.029s 102: 102: OK 102: () 102: ******************************************** 102: $RXN 102: 102: RDKit 102: 102: 2 1 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 1 0 0 0 0 0 0999 V2000 102: -3.2730 -7.0542 0.0000 Br 0 0 0 0 0 0 0 0 0 0 0 0 102: -3.9875 -7.4667 0.0000 R# 0 0 0 0 0 0 0 0 0 1 0 0 102: 1 2 1 0 102: M RGP 1 2 1 102: V 1 halogen.bromine.aromatic 102: V 2 [*:1] 102: M STY 1 1 DAT 102: M SAL 1 1 1 102: M SED 1 [#35&$([Br&$(Br-&!@c)])] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 4 3 0 1 0 0 0 0 0 0999 V2000 102: 3.4375 -7.7917 0.0000 R# 0 0 0 0 0 0 0 0 0 2 0 0 102: 4.1520 -7.3792 0.0000 B 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -6.5542 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.8664 -7.7917 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 2 3 1 0 102: 1 2 1 0 102: 2 4 1 0 102: M RGP 1 1 2 102: V 1 [*:2] 102: V 2 boronicacid 102: M STY 1 1 DAT 102: M SAL 1 1 2 102: M SED 1 [#5&$([$(B-&!@[#6])](O)O)] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 0 0 0 0 0 0 0999 V2000 102: 11.2667 -7.3417 0.0000 R# 0 0 0 0 0 0 0 0 0 1 0 0 102: 11.9811 -6.9292 0.0000 R# 0 0 0 0 0 0 0 0 0 2 0 0 102: 1 2 1 0 102: M RGP 2 1 1 2 2 102: V 1 [*:1] 102: V 2 [*:2] 102: M END 102: 102: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 102: $RXN 102: 102: RDKit 102: 102: 2 1 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 1 0 0 0 0 0 0999 V2000 102: -3.2730 -7.0542 0.0000 Br 0 0 0 0 0 0 0 0 0 0 0 0 102: -3.9875 -7.4667 0.0000 R# 0 0 0 0 0 0 0 0 0 1 0 0 102: 1 2 1 0 102: M RGP 1 2 1 102: V 1 halogen.bromine.aromatic 102: V 2 [*:1] 102: M STY 1 1 DAT 102: M SAL 1 1 1 102: M SED 1 [#35&$([Br&$(Br-&!@c)])] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 4 3 0 1 0 0 0 0 0 0999 V2000 102: 3.4375 -7.7917 0.0000 R# 0 0 0 0 0 0 0 0 0 2 0 0 102: 4.1520 -7.3792 0.0000 B 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -6.5542 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.8664 -7.7917 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 2 3 1 0 102: 1 2 1 0 102: 2 4 1 0 102: M RGP 1 1 2 102: V 1 [*:2] 102: V 2 boronicacid 102: M STY 1 1 DAT 102: M SAL 1 1 2 102: M SED 1 [#5&$([$(B-&!@[#6])](O)O)] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 0 0 0 0 0 0 0999 V2000 102: 11.2667 -7.3417 0.0000 R# 0 0 0 0 0 0 0 0 0 1 0 0 102: 11.9811 -6.9292 0.0000 R# 0 0 0 0 0 0 0 0 0 2 0 0 102: 1 2 1 0 102: M RGP 2 1 1 2 2 102: V 1 [*:1] 102: V 2 [*:2] 102: M END 102: 102: ******************************************** 102: $RXN 102: 102: RDKit 102: 102: 2 1 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 1 0 0 0 0 0 0999 V2000 102: -3.2730 -7.0542 0.0000 Br 0 0 0 0 0 0 0 0 0 0 0 0 102: -3.9875 -7.4667 0.0000 R# 0 0 0 0 0 0 0 0 0 0 0 0 102: 1 2 1 0 102: M RGP 1 2 1 102: V 1 halogen.bromine.aromatic 102: V 2 * 102: M STY 1 1 DAT 102: M SAL 1 1 1 102: M SED 1 [#35&$([Br&$(Br-&!@c)])] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 4 3 0 1 0 0 0 0 0 0999 V2000 102: 3.4375 -7.7917 0.0000 R# 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -7.3792 0.0000 B 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -6.5542 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.8664 -7.7917 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 2 3 1 0 102: 1 2 1 0 102: 2 4 1 0 102: M RGP 1 1 2 102: V 1 * 102: V 2 boronicacid 102: M STY 1 1 DAT 102: M SAL 1 1 2 102: M SED 1 [#5&$([$(B-&!@[#6])](O)O)] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 0 0 0 0 0 0 0999 V2000 102: 11.2667 -7.3417 0.0000 R# 0 0 0 0 0 0 0 0 0 0 0 0 102: 11.9811 -6.9292 0.0000 R# 0 0 0 0 0 0 0 0 0 0 0 0 102: 1 2 1 0 102: M RGP 2 1 1 2 2 102: V 1 * 102: V 2 * 102: M END 102: 102: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 102: $RXN 102: 102: RDKit 102: 102: 2 1 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 1 0 0 0 0 0 0999 V2000 102: -3.2730 -7.0542 0.0000 Br 0 0 0 0 0 0 0 0 0 0 0 0 102: -3.9875 -7.4667 0.0000 R# 0 0 0 0 0 0 0 0 0 1 0 0 102: 1 2 1 0 102: M RGP 1 2 1 102: V 1 halogen.bromine.aromatic 102: V 2 [*:1] 102: M STY 1 1 DAT 102: M SAL 1 1 1 102: M SED 1 [#35&$([Br&$(Br-&!@c)])] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 4 3 0 1 0 0 0 0 0 0999 V2000 102: 3.4375 -7.7917 0.0000 R# 0 0 0 0 0 0 0 0 0 2 0 0 102: 4.1520 -7.3792 0.0000 B 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -6.5542 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.8664 -7.7917 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 2 3 1 0 102: 1 2 1 0 102: 2 4 1 0 102: M RGP 1 1 2 102: V 1 [*:2] 102: V 2 boronicacid 102: M STY 1 1 DAT 102: M SAL 1 1 2 102: M SED 1 [#5&$([$(B-&!@[#6])](O)O)] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 0 0 0 0 0 0 0999 V2000 102: 11.2667 -7.3417 0.0000 R# 0 0 0 0 0 0 0 0 0 1 0 0 102: 11.9811 -6.9292 0.0000 R# 0 0 0 0 0 0 0 0 0 2 0 0 102: 1 2 1 0 102: M RGP 2 1 1 2 2 102: V 1 [*:1] 102: V 2 [*:2] 102: M END 102: 102: ******************************************** 102: $RXN 102: 102: RDKit 102: 102: 2 1 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 1 0 0 0 0 0 0999 V2000 102: -3.2730 -7.0542 0.0000 Br 0 0 0 0 0 0 0 0 0 0 0 0 102: -3.9875 -7.4667 0.0000 R1 0 0 0 0 0 0 0 0 0 0 0 0 102: 1 2 1 0 102: M ISO 1 2 1 102: V 1 halogen.bromine.aromatic 102: M STY 1 1 DAT 102: M SAL 1 1 1 102: M SED 1 [#35&$([Br&$(Br-&!@c)])] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 4 3 0 1 0 0 0 0 0 0999 V2000 102: 3.4375 -7.7917 0.0000 R2 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -7.3792 0.0000 B 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -6.5542 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.8664 -7.7917 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 2 3 1 0 102: 1 2 1 0 102: 2 4 1 0 102: M ISO 1 1 2 102: V 2 boronicacid 102: M STY 1 1 DAT 102: M SAL 1 1 2 102: M SED 1 [#5&$([$(B-&!@[#6])](O)O)] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 0 0 0 0 0 0 0999 V2000 102: 11.2667 -7.3417 0.0000 R1 0 0 0 0 0 0 0 0 0 0 0 0 102: 11.9811 -6.9292 0.0000 R2 0 0 0 0 0 0 0 0 0 0 0 0 102: 1 2 1 0 102: M ISO 2 1 1 2 2 102: M END 102: 102: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 102: $RXN 102: 102: RDKit 102: 102: 2 1 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 1 0 0 0 0 0 0999 V2000 102: -3.2730 -7.0542 0.0000 Br 0 0 0 0 0 0 0 0 0 0 0 0 102: -3.9875 -7.4667 0.0000 R# 0 0 0 0 0 0 0 0 0 1 0 0 102: 1 2 1 0 102: M RGP 1 2 1 102: V 1 halogen.bromine.aromatic 102: V 2 [*:1] 102: M STY 1 1 DAT 102: M SAL 1 1 1 102: M SED 1 [#35&$([Br&$(Br-&!@c)])] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 4 3 0 1 0 0 0 0 0 0999 V2000 102: 3.4375 -7.7917 0.0000 R# 0 0 0 0 0 0 0 0 0 2 0 0 102: 4.1520 -7.3792 0.0000 B 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -6.5542 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.8664 -7.7917 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 2 3 1 0 102: 1 2 1 0 102: 2 4 1 0 102: M RGP 1 1 2 102: V 1 [*:2] 102: V 2 boronicacid 102: M STY 1 1 DAT 102: M SAL 1 1 2 102: M SED 1 [#5&$([$(B-&!@[#6])](O)O)] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 0 0 0 0 0 0 0999 V2000 102: 11.2667 -7.3417 0.0000 R# 0 0 0 0 0 0 0 0 0 1 0 0 102: 11.9811 -6.9292 0.0000 R# 0 0 0 0 0 0 0 0 0 2 0 0 102: 1 2 1 0 102: M RGP 2 1 1 2 2 102: V 1 [*:1] 102: V 2 [*:2] 102: M END 102: 102: ******************************************** 102: $RXN 102: 102: RDKit 102: 102: 2 1 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 1 0 0 0 0 0 0999 V2000 102: -3.2730 -7.0542 0.0000 Br 0 0 0 0 0 0 0 0 0 0 0 0 102: -3.9875 -7.4667 0.0000 R1 0 0 0 0 0 0 0 0 0 0 0 0 102: 1 2 1 0 102: M ISO 1 2 1 102: V 1 halogen.bromine.aromatic 102: M STY 1 1 DAT 102: M SAL 1 1 1 102: M SED 1 [#35&$([Br&$(Br-&!@c)])] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 4 3 0 1 0 0 0 0 0 0999 V2000 102: 3.4375 -7.7917 0.0000 R3 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -7.3792 0.0000 B 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -6.5542 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.8664 -7.7917 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 2 3 1 0 102: 1 2 1 0 102: 2 4 1 0 102: M ISO 1 1 3 102: V 2 boronicacid 102: M STY 1 1 DAT 102: M SAL 1 1 2 102: M SED 1 [#5&$([$(B-&!@[#6])](O)O)] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 0 0 0 0 0 0 0999 V2000 102: 11.2667 -7.3417 0.0000 R1 0 0 0 0 0 0 0 0 0 0 0 0 102: 11.9811 -6.9292 0.0000 R2 0 0 0 0 0 0 0 0 0 0 0 0 102: 1 2 1 0 102: M ISO 2 1 1 2 2 102: M END 102: 102: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 102: $RXN 102: 102: RDKit 102: 102: 2 1 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 1 0 0 0 0 0 0999 V2000 102: -3.2730 -7.0542 0.0000 Br 0 0 0 0 0 0 0 0 0 0 0 0 102: -3.9875 -7.4667 0.0000 R# 0 0 0 0 0 0 0 0 0 1 0 0 102: 1 2 1 0 102: M RGP 1 2 1 102: V 1 halogen.bromine.aromatic 102: V 2 [*:1] 102: M STY 1 1 DAT 102: M SAL 1 1 1 102: M SED 1 [#35&$([Br&$(Br-&!@c)])] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 4 3 0 1 0 0 0 0 0 0999 V2000 102: 3.4375 -7.7917 0.0000 R3 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -7.3792 0.0000 B 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.1520 -6.5542 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 4.8664 -7.7917 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 102: 2 3 1 0 102: 1 2 1 0 102: 2 4 1 0 102: M ISO 1 1 3 102: V 2 boronicacid 102: M STY 1 1 DAT 102: M SAL 1 1 2 102: M SED 1 [#5&$([$(B-&!@[#6])](O)O)] 102: M END 102: $MOL 102: 102: RDKit 2D 102: 102: 2 1 0 0 0 0 0 0 0 0999 V2000 102: 11.2667 -7.3417 0.0000 R# 0 0 0 0 0 0 0 0 0 1 0 0 102: 11.9811 -6.9292 0.0000 R2 0 0 0 0 0 0 0 0 0 0 0 0 102: 1 2 1 0 102: M ISO 1 2 2 102: M RGP 1 1 1 102: V 1 [*:1] 102: M END 102: 102: $RXN Failed 29: Checking against /build/reproducible-path/rdkit-202503.6/Code/ForceField/MMFF/test_data/MMFF94_reference.log... 95/246 Test #102: pyChemReactionSanitize ................. Passed 0.41 sec test 103 Start 103: testChemTransforms 103: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/testChemTransforms 103: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms 103: Test timeout computed to be: 7200 103: 1 smi: CC 103: 1 smi: CC 103: 2 smi: CCO[C@H](N)P 103: 2 smi: CC 103: replaceSub smi1:CCP(CC)[C@@H](N)O 103: replaceSub smi1:CCNCC 103: sidechains chiral=true smi1;;; [1*]P([2*])[C@H](N)O 103: sidechains chiral=false smi1;;; [1*]P([2*])[C@H](N)O 103: [04:01:44] SMARTS Parse Error: syntax error while parsing: bar 103: [04:01:44] SMARTS Parse Error: check for mistakes around position 3: 103: [04:01:44] bar 103: [04:01:44] ~~^ 103: [04:01:44] SMARTS Parse Error: Failed parsing SMARTS 'bar' for input: 'bar' 96/246 Test #103: testChemTransforms ..................... Passed 0.05 sec test 104 Start 104: chemTransformsTestCatch 104: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms 104: Test timeout computed to be: 7200 104: Randomness seeded to: 3304137867 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: bond info already exists for end atom with label:1 104: Violation occurred on line 1097 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: !bond.b 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# 0x0000000103626F74 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 5# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: bond info already exists for end atom with label:1 104: Violation occurred on line 1097 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: !bond.b 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# 0x0000000103626F74 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 5# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: bond info already exists for end atom with label:1 104: Violation occurred on line 1097 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: !bond.b 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# 0x0000000103626F74 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 5# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: bond info already exists for end atom with label:1 104: Violation occurred on line 1097 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: !bond.b 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# 0x0000000103626F74 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 5# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: bond info already exists for end atom with label:1 104: Violation occurred on line 1097 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: !bond.b 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# 0x0000000103626F74 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 5# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: bond info already exists for end atom with label:1 104: Violation occurred on line 1097 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: !bond.b 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# 0x0000000103626F74 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 5# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: bond info already exists for end atom with label:1 104: Violation occurred on line 1097 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: !bond.b 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# 0x0000000103626F74 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 5# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: bond info already exists for end atom with label:1 104: Violation occurred on line 1097 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: !bond.b 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# 0x0000000103626F74 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 5# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: bond info already exists for end atom with label:1 104: Violation occurred on line 1097 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: !bond.b 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# 0x0000000103626F74 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 5# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: [04:01:44] Incomplete atom labelling, cannot make bond 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: bond info already exists for end atom with label:1 104: Violation occurred on line 1097 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: !bond.b 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# 0x0000000103626F74 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 5# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 13# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: [04:01:44] 104: 104: **** 104: Invariant Violation 104: molzip: zipped Bond already exists, perhaps labels are duplicated 104: Violation occurred on line 749 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 104: Failed Expression: params.label == MolzipLabel::FragmentOnBonds || !a->getOwningMol().getBondBetweenAtoms(a->getIdx(), b->getIdx()) 104: ---------- 104: Stacktrace: 104: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 104: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 4# RDKit::molzip(RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 104: 5# 0x000000010361F1B4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 6# 0x000000010369F754 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 7# 0x00000001036926A0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 8# 0x00000001036933F4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 9# 0x0000000103693A40 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 10# 0x000000010365A8D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 11# 0x000000010365AEF0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 12# 0x000000010361D26C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ChemTransforms/chemTransformsTestCatch 104: 13# 0x00007FFF7E827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: 14# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 104: ---------- 104: **** 104: 104: =============================================================================== 104: All tests passed (502 assertions in 11 test cases) 104: 97/246 Test #104: chemTransformsTestCatch ................ Passed 0.05 sec test 105 Start 105: tautomerQueryTestCatch 105: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery/tautomerQueryTestCatch 105: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery 105: Test timeout computed to be: 7200 29: All 191 tests passed 29: done 29: ------------------------------------- 29: Unit tests for all MMFF constraint terms. 29: 10.0003 29: done 29: ------------------------------------- 29: Unit test for MMFF TorsionConstraint close to 0 degrees. 29: done 29: ------------------------------------- 29: Unit tests for copying MMFF ForceFields. 105: Randomness seeded to: 1691846641 105: =============================================================================== 105: All tests passed (112 assertions in 14 test cases) 105: 98/246 Test #105: tautomerQueryTestCatch ................. Passed 0.15 sec test 106 Start 106: pyTautomerQuery 106: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/TautomerQuery/Wrap/rough_test.py" 106: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/TautomerQuery/Wrap 106: Test timeout computed to be: 7200 29: done 29: ------------------------------------- 29: Unit test for MMFF butane scan. 82: =============================================================================== 82: All tests passed (1645 assertions in 100 test cases) 82: 99/246 Test #82: fileParsersCatchTest ................... Passed 8.99 sec test 107 Start 107: testSubgraphs1 107: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs/testSubgraphs1 107: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs 107: Test timeout computed to be: 7200 107: ----------------------- 107: Subgraph retrieval 107: Finished 107: ----------------------- 107: testSubgraphs2a 107: Finished 107: ----------------------- 107: testSubgraphs2 106: ..... 106: ---------------------------------------------------------------------- 106: Ran 5 tests in 0.023s 106: 106: OK 107: Finished 107: ----------------------- 107: Path retrieval 107: Finished 107: ----------------------- 107: Path retrieval2 107: Finished 107: ----------------------- 107: Unique Subgraph retrieval 107: Finished 107: ----------------------- 107: testUniqueSubgraphs2 100/246 Test #106: pyTautomerQuery ........................ Passed 0.21 sec test 108 Start 108: testSubgraphs2 108: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs/testSubgraphs2 108: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs 108: Test timeout computed to be: 7200 108: ----------------------- 108: Test1: pathToSubmol 108: Finished 108: ----------------------- 108: Test2: Atom Environments 108: Finished 108: ----------------------- 108: Test 3: Atom Environments (Extension) 108: Finished 108: ----------------------- 108: Testing github Issue103: stereochemistry and pathToSubmol 108: Finished 108: ----------------------- 108: Testing github Issue103: more stereochemistry and pathToSubmol (path needs to be in sorted order) 108: Finished 101/246 Test #108: testSubgraphs2 ......................... Passed 0.02 sec test 109 Start 109: subgraphsCatch 109: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs/subgraphsCatch 109: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Subgraphs 109: Test timeout computed to be: 7200 109: Randomness seeded to: 2548446110 109: --------- 109: =============================================================================== 109: All tests passed (11 assertions in 1 test case) 109: 102/246 Test #109: subgraphsCatch ......................... Passed 0.01 sec test 110 Start 110: filterCatalogTest 110: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog/filterCatalogTest 110: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog 110: Test timeout computed to be: 7200 101: . 101: ---------------------------------------------------------------------- 101: Ran 11 tests in 1.046s 101: 101: OK 101: True 101: == CartesianProductStrategy CartesianProductStrategy 101: 197 out of 300 101: 0 6 out of 10 101: 1 3 out of 5 101: 2 4 out of 6 101: 198 out of 300 101: 0 10 out of 10 101: 1 5 out of 5 101: 2 6 out of 6 101: Skipped 10000000 in 0.0725409984588623 seconds 101: Skipped 10000000 in 0.4449610710144043 seconds 101: Skipped 10000000 in 0.22118353843688965 seconds 110: Warning: molecule failed filter 110: Warning: molecule failed filter: reason hzone_phenol_A(479) 110: v = { 110: 0,23}, 110: 1,22}, 110: 2,20}, 110: 3,19}, 110: 4,25}, 110: 5,24}, 110: 6,18}, 110: 7,17}, 110: 8,16}, 110: 9,21}, 110: } 110: match = { 110: 0,23}, 110: 1,22}, 110: 2,20}, 110: 3,19}, 110: 4,25}, 110: 5,24}, 110: 6,18}, 110: 7,17}, 110: 8,16}, 110: 9,21}, 110: } 110: Warning: molecule failed filter 110: Warning: molecule failed filter: reason cyano_imine_B(17) 110: v = { 110: 0,11}, 110: 1,12}, 110: 2,13}, 110: 3,14}, 110: 4,15}, 110: 5,10}, 110: 6,9}, 110: 7,8}, 110: 8,7}, 110: 9,6}, 110: 10,5}, 110: 11,17}, 110: 12,16}, 110: } 110: match = { 110: 0,11}, 110: 1,12}, 110: 2,13}, 110: 3,14}, 110: 4,15}, 110: 5,10}, 110: 6,9}, 110: 7,8}, 110: 8,7}, 110: 9,6}, 110: 10,5}, 110: 11,17}, 110: 12,16}, 110: } 110: Warning: molecule failed filter 110: Warning: molecule failed filter: reason keto_keto_gamma(5) 110: v = { 110: 0,0}, 110: 1,1}, 110: 2,2}, 110: 3,4}, 110: 4,5}, 110: 5,6}, 110: 6,7}, 110: 7,8}, 110: 8,9}, 110: 9,14}, 110: 10,15}, 110: 11,16}, 110: } 110: match = { 110: 0,0}, 110: 1,1}, 110: 2,2}, 110: 3,4}, 110: 4,5}, 110: 5,6}, 110: 6,7}, 110: 7,8}, 110: 8,9}, 110: 9,14}, 110: 10,15}, 110: 11,16}, 110: } 107: Finished 107: ----------------------- 107: testRootedSubgraphs 107: Finished 107: ----------------------- 107: testRootedPaths 107: Finished 103/246 Test #107: testSubgraphs1 ......................... Passed 0.20 sec test 111 Start 111: pyFilterCatalog 111: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/FilterCatalog/Wrap/rough_test.py" 111: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FilterCatalog/Wrap 111: Test timeout computed to be: 7200 104/246 Test #101: pyChemReactionEnumerations ............. Passed 1.50 sec test 112 Start 112: testFragCatalog 112: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/testFragCatalog 112: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog 112: Test timeout computed to be: 7200 29: done 105/246 Test #29: testMMFFForceField ..................... Passed 16.34 sec test 113 Start 113: pyFragCatalog 113: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/FragCatalog/Wrap/rough_test.py" 113: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/Wrap 113: Test timeout computed to be: 7200 112: 21 106/246 Test #110: filterCatalogTest ...................... Passed 0.26 sec test 114 Start 114: testDescriptors 114: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testDescriptors 114: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 114: Test timeout computed to be: 7200 111: :488: RuntimeWarning: to-Python converter for boost::shared_ptr already registered; second conversion method ignored. 114: [04:01:44] ------------------------------------- 114: [04:01:44] Test Crippen parameter acquisition. 114: [04:01:44] done 114: [04:01:44] ------------------------------------- 114: [04:01:44] Test Crippen calculation. 114: [04:01:44] done 114: [04:01:44] ------------------------------------- 114: [04:01:44] Test Issue262: problems with Crippen calculation from pickles. 114: [04:01:44] done 114: [04:01:44] ------------------------------------- 114: [04:01:44] Test AMW calculation. 114: [04:01:44] done 114: [04:01:44] ------------------------------------- 114: [04:01:44] Test Exact MW calculation. 114: [04:01:44] done 114: [04:01:44] ------------------------------------- 114: [04:01:44] Test Labute ASA descriptors. 114: [04:01:44] done 114: [04:01:44] ------------------------------------- 114: [04:01:44] Test TPSA descriptors. 114: [04:01:45] done 114: [04:01:45] ------------------------------------- 114: [04:01:45] Test Lipinski parameters. 114: [04:01:45] done 114: [04:01:45] ------------------------------------- 114: [04:01:45] Test VSA descriptors. 114: [04:01:45] done 114: [04:01:45] ------------------------------------- 114: [04:01:45] Test molecular formula calculation. 114: [04:01:45] done 114: [04:01:45] ------------------------------------- 114: [04:01:45] Test Issue 3415534. 114: [04:01:45] done 114: [04:01:45] ------------------------------------- 114: [04:01:45] Test Issue3433771: Bad definition for Crippen atom type O11. 114: [04:01:45] done 114: [04:01:45] ------------------------------------- 114: [04:01:45] Test multithreading 114: reading molecules 114: processing 114: launch :0 114: launch :1 113: ......... 113: ---------------------------------------------------------------------- 113: Ran 9 tests in 0.067s 113: 113: OK 114: launch :2 114: launch :3 107/246 Test #113: pyFragCatalog .......................... Passed 0.47 sec test 115 Start 115: testAUTOCORR2D 115: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testAUTOCORR2D 115: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 115: Test timeout computed to be: 7200 115: [04:01:45] ---------------------------- 115: start test autocorr2D 112: [04:01:45] 112: 112: **** 112: Invariant Violation 112: nonsense 112: Violation occurred on line 52 in file ./Code/GraphMol/FragCatalog/FragCatalogUtils.cpp 112: Failed Expression: token != tokens.end() 112: ---------- 112: Stacktrace: 112: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 112: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 112: 2# 0x00007FFF8EB4686C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFragCatalog.so.1 112: 3# RDKit::readFuncGroups(std::istream&, int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFragCatalog.so.1 112: 4# 0x00000001188DA244 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/testFragCatalog 112: 5# 0x00000001188D49D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/testFragCatalog 112: 6# 0x00007FFF8DC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 112: 7# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 112: ---------- 112: **** 112: 112: [04:01:45] 112: 112: **** 112: Invariant Violation 112: nonsense no new line 112: Violation occurred on line 52 in file ./Code/GraphMol/FragCatalog/FragCatalogUtils.cpp 112: Failed Expression: token != tokens.end() 112: ---------- 112: Stacktrace: 112: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 112: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 112: 2# 0x00007FFF8EB4686C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFragCatalog.so.1 112: 3# RDKit::readFuncGroups(std::istream&, int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFragCatalog.so.1 112: 4# 0x00000001188DA244 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/testFragCatalog 112: 5# 0x00000001188D49D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/testFragCatalog 112: 6# 0x00007FFF8DC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 112: 7# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 112: ---------- 112: **** 112: 112: [04:01:45] 112: 112: **** 112: Invariant Violation 112: nonsense with tab 112: Violation occurred on line 52 in file ./Code/GraphMol/FragCatalog/FragCatalogUtils.cpp 112: Failed Expression: token != tokens.end() 112: ---------- 112: Stacktrace: 112: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 112: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 112: 2# 0x00007FFF8EB4686C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFragCatalog.so.1 112: 3# RDKit::readFuncGroups(std::istream&, int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitFragCatalog.so.1 112: 4# 0x00000001188DA244 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/testFragCatalog 112: 5# 0x00000001188D49D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FragCatalog/testFragCatalog 112: 6# 0x00007FFF8DC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 112: 7# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 112: ---------- 112: **** 112: 108/246 Test #112: testFragCatalog ........................ Passed 1.05 sec test 116 Start 116: testATF 116: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testATF 116: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 116: Test timeout computed to be: 7200 109/246 Test #116: testATF ................................ Passed 0.04 sec test 117 Start 117: testBCUT 117: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testBCUT 117: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 117: Test timeout computed to be: 7200 117: [04:01:45] ------------------------------------- 117: [04:01:45] Basic BCUT tests. 111: .............[04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 117: [04:01:45] done 117: [04:01:45] ------------------------------------- 117: [04:01:45] Larger BCUT tests. 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 115: [04:01:45] done 115: [04:01:45] ------------------------------------- 115: [04:01:45] Test Github #3806: NaNs from AUTOCORR2D descriptor 115: [04:01:45] done 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 110/246 Test #115: testAUTOCORR2D ......................... Passed 0.65 sec 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf test 118 Start 118: testEEM 118: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testEEM 118: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 118: Test timeout computed to be: 7200 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 111: [04:01:45] SMILES Parse Error: syntax error while parsing: --- 111: [04:01:45] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:45] --- 111: [04:01:45] ^ 111: [04:01:45] SMILES Parse Error: Failed parsing SMILES '---' for input: '---' 111: [04:01:45] dasfsadf 118: =>start test EEM 118: [04:01:45] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: 0 118: [04:01:45] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:45] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:45] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:45] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:45] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 111: .[04:01:46] SMILES Parse Error: syntax error while parsing: mydoghasfleas 111: [04:01:46] SMILES Parse Error: check for mistakes around position 1: 111: [04:01:46] mydoghasfleas 111: [04:01:46] ^ 111: [04:01:46] SMILES Parse Error: Failed parsing SMILES 'mydoghasfleas' for input: 'mydoghasfleas' 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: 100 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 111: ....... 111: ---------------------------------------------------------------------- 111: Ran 21 tests in 1.245s 111: 111: OK 111: (Five aromatic carbons And (Not any of Five aromatic carbons)) 111: (Five aromatic carbons Or (Not any of Five aromatic carbons)) 111: (Not (Five aromatic carbons And (Not any of Five aromatic carbons))) 111: ******************************************** 111: Testing: PAINS_A 2 111: ******************************************** 111: Testing: PAINS_B 4 111: ******************************************** 111: Testing: PAINS_C 8 111: ******************************************** 111: Testing: PAINS 14 111: (Not FilterMatcher) 111: Bar 111: Count 1 111: ******************************************** 111: {'Cl,Br,I'} 111: 1 111: 2 111: running 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 111/246 Test #111: pyFilterCatalog ........................ Passed 1.53 sec test 119 Start 119: testPBF 119: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testPBF 119: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 119: Test timeout computed to be: 7200 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 119: [04:01:46] ------------------------------------- 119: [04:01:46] Basic PBF tests. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: 200 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: 300 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 119: [04:01:46] done 119: [04:01:46] ------------------------------------- 119: [04:01:46] PBF edge cases. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 119: [04:01:46] done 112/246 Test #119: testPBF ................................ Passed 0.26 sec test 120 Start 120: testRDFcustom 120: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testRDFcustom 120: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 120: Test timeout computed to be: 7200 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: 400 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 117: [04:01:46] ------------------------------------- 117: [04:01:46] Test empty molecule BCUT. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 113/246 Test #117: testBCUT ............................... Passed 0.87 sec test 121 Start 121: testRDF 121: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testRDF 121: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 121: Test timeout computed to be: 7200 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: [04:01:46] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 118: Elapsed time: 0.827488 s 118: Errors:0 118: [04:01:46] test on : 500 molecules done 114/246 Test #118: testEEM ................................ Passed 0.85 sec test 122 Start 122: testMORSE 122: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testMORSE 122: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 122: Test timeout computed to be: 7200 121: =>start test rdf 121: [04:01:47] test on : 365 molecules done 115/246 Test #121: testRDF ................................ Passed 0.59 sec test 123 Start 123: test3D 123: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/test3D 123: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 123: Test timeout computed to be: 7200 123: [04:01:47] ------------------------------------- 123: [04:01:47] Basic PMI tests. 120: =>start test rdf custom 120: [04:01:47] test on : 365 molecules done 123: [04:01:47] done 123: [04:01:47] ------------------------------------- 123: [04:01:47] More PMI/NPR tests. 123: [04:01:47] done 123: [04:01:47] ------------------------------------- 123: [04:01:47] Basic NPR tests. 123: [04:01:47] done 123: [04:01:47] ------------------------------------- 123: [04:01:47] PMI edge cases. 123: [04:01:47] done 123: [04:01:47] ------------------------------------- 123: [04:01:47] NPR edge cases. 123: [04:01:47] done 123: [04:01:47] ------------------------------------- 123: [04:01:47] 3D descriptors. 123: [04:01:47] done 123: [04:01:47] ------------------------------------- 123: [04:01:47] 3D descriptor edge cases. 123: [04:01:47] done 123: [04:01:47] ------------------------------------- 123: [04:01:47] Inertial shape factor. 123: [04:01:47] done 116/246 Test #123: test3D ................................. Passed 0.56 sec test 124 Start 124: testWHIM 124: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testWHIM 124: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 124: Test timeout computed to be: 7200 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test Issue252: Bad definitions for Crippen atom types. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test calculation of ChiVs. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test calculation of ChiNs. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test calculation of HallKierAlpha. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test calculation of Kappa1. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test calculation of Kappa2. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test calculation of Kappa3. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test Crippen atom type calculations. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test ring descriptors 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test other count descriptors. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test MQN 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test GitHub Issue 56. 114: [04:01:48] WARNING: not removing hydrogen atom without neighbors 114: [04:01:48] WARNING: not removing hydrogen atom without neighbors 114: [04:01:48] WARNING: not removing hydrogen atom without neighbors 114: [04:01:48] WARNING: not removing hydrogen atom without neighbors 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test Github92: Bad Crippen atom type for pyrrole H. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test Github362: order dependence in Kier-Hall descriptors. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test calculation of spiro and bridgehead counts. 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test Github694: ExactMolWt ignoring the mass of the electron 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Testing Properties and KitchenSink 114: [04:01:48] ---Caught keyerror (bad property name)--- 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test USR Descriptor 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test Github #1702: AUTOCORR2D.h not installed unless RDK_BUILD_DESCRIPTORS3D but is required 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test Github #1973: support P and S terms for TPSA calculation 114: [04:01:48] done 114: [04:01:48] ------------------------------------- 114: [04:01:48] Test Github #2948: Empty molecule has non-zero LabuteASA 114: [04:01:48] done 117/246 Test #114: testDescriptors ........................ Passed 3.23 sec test 125 Start 125: testGETAWAY 125: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testGETAWAY 125: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 125: Test timeout computed to be: 7200 122: =>start test MORSE 122: =>read file 122: [04:01:48] test on : 365 molecules done 118/246 Test #122: testMORSE .............................. Passed 1.45 sec test 126 Start 126: testAUTOCORR3D 126: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testAUTOCORR3D 126: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 126: Test timeout computed to be: 7200 124: =>start test WHIM 124: [04:01:48] test on : 365 molecules done 119/246 Test #124: testWHIM ............................... Passed 0.41 sec test 127 Start 127: testCoulombMat 127: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/testCoulombMat 127: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 127: Test timeout computed to be: 7200 127: ===================== Testing CoulombMat ======================= 52: Randomness seeded to: 1610059310 52: =============================================================================== 52: All tests passed (14835 assertions in 14 test cases) 52: 120/246 Test #52: canonTestsCatch ........................ Passed 18.45 sec test 128 Start 128: descriptorsTestCatch 128: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/descriptorsTestCatch 128: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors 128: Test timeout computed to be: 7200 127: CM test 1 mat Done 121/246 Test #127: testCoulombMat ......................... Passed 0.04 sec test 129 Start 129: pyMolDescriptors 129: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py" 129: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/Wrap 129: Test timeout computed to be: 7200 128: Randomness seeded to: 1847873917 128: Warning: Atom Count for residue GLU5A does not match expected count 128: Warning: Atom Count for residue ASN39A does not match expected count 128: Warning: Atom Count for residue GLU53A does not match expected count 128: Warning: Atom Count for residue ARG64A does not match expected count 128: Warning: Atom Count for residue LYS80A does not match expected count 128: Warning: Atom Count for residue GLU150A does not match expected count 128: Warning: Atom Count for residue ASN157A does not match expected count 128: Warning: Atom Count for residue GLU5A does not match expected count 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:48] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: ..[04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: .[04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:48] DEPRECATION WARNING: please use AtomPairGenerator 129: ..[04:01:48] 129: 129: **** 129: Pre-condition Violation 129: Number of atom props not equal to number of atoms 129: Violation occurred on line 89 in file ./Code/GraphMol/Descriptors/BCUT.cpp 129: Failed Expression: atom_props.size() == num_atoms 129: ---------- 129: Stacktrace: 129: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 129: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 129: 2# RDKit::Descriptors::BCUT2D(RDKit::ROMol const&, std::vector > const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitDescriptors.so.1 129: 3# 0x00007FFF79DECE70 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolDescriptors.so 129: 4# 0x00007FFF79E1F8EC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolDescriptors.so 129: 5# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 6# 0x00007FFF7EAEAD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 7# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 8# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 129: 9# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 10# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 129: 11# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 12# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 129: 13# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 14# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 129: 15# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 16# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 129: 17# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 18# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 129: 19# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 20# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 129: 21# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 22# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 129: 23# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 24# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 129: 25# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 26# 0x00007FFF7C5A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 129: 27# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 28# 0x00007FFF7C5A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 129: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 30# 0x00007FFF7C5A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 129: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 32# 0x00007FFF7C5A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 129: 33# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 34# 0x00007FFF7C5A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 129: 35# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 36# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 129: 37# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 38# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 129: 39# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 40# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 129: 41# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 42# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 129: 43# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 44# 0x00007FFF7EAE6264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 129: 45# _PyObject_MakeTpCall in /usr/bin/python3 129: 46# _PyEval_EvalFrameDefault in /usr/bin/python3 129: 47# 0x0000000010162EE0 in /usr/bin/python3 129: 48# 0x00000000101B9704 in /usr/bin/python3 129: 49# 0x0000000010181FB4 in /usr/bin/python3 129: 50# _PyEval_EvalFrameDefault in /usr/bin/python3 129: 51# 0x000000001030064C in /usr/bin/python3 129: 52# 0x0000000010258FE4 in /usr/bin/python3 129: 53# _PyObject_MakeTpCall in /usr/bin/python3 129: 54# _PyEval_EvalFrameDefault in /usr/bin/python3 129: 55# 0x0000000010162EE0 in /usr/bin/python3 129: 56# 0x00000000101B9704 in /usr/bin/python3 129: 57# 0x0000000010181FB4 in /usr/bin/python3 129: 58# _PyEval_EvalFrameDefault in /usr/bin/python3 129: 59# 0x000000001030064C in /usr/bin/python3 129: 60# 0x0000000010258FE4 in /usr/bin/python3 129: 61# _PyObject_MakeTpCall in /usr/bin/python3 129: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 129: 63# 0x0000000010162EE0 in /usr/bin/python3 129: 64# 0x00000000101B9704 in /usr/bin/python3 129: 65# 0x0000000010181FB4 in /usr/bin/python3 129: 66# _PyEval_EvalFrameDefault in /usr/bin/python3 129: 67# 0x000000001030064C in /usr/bin/python3 129: 68# 0x0000000010258FE4 in /usr/bin/python3 129: 69# _PyObject_MakeTpCall in /usr/bin/python3 129: 70# _PyEval_EvalFrameDefault in /usr/bin/python3 129: 71# 0x000000001016F888 in /usr/bin/python3 129: 72# _PyObject_MakeTpCall in /usr/bin/python3 129: 73# _PyEval_EvalFrameDefault in /usr/bin/python3 129: 74# PyEval_EvalCode in /usr/bin/python3 129: 75# 0x000000001032E06C in /usr/bin/python3 129: 76# 0x000000001032844C in /usr/bin/python3 129: 77# 0x00000000103689CC in /usr/bin/python3 129: 78# 0x00000000103680D0 in /usr/bin/python3 129: 79# 0x0000000010367DA4 in /usr/bin/python3 129: 80# Py_RunMain in /usr/bin/python3 129: 81# 0x00000000102E95E8 in /usr/bin/python3 129: 82# Py_BytesMain in /usr/bin/python3 129: 83# 0x00007FFF7F227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 129: 84# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 129: ---------- 126: =>start test autocorr3D 126: [04:01:48] test on : 365 molecules done 129: **** 129: 122/246 Test #126: testAUTOCORR3D ......................... Passed 0.40 sec test 130 Start 130: pyMolDescriptors3D 130: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Descriptors/Wrap/test3D.py" 130: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Descriptors/Wrap 130: Test timeout computed to be: 7200 129: ...Warning: Atom Count for residue GLU5A does not match expected count 129: Warning: Atom Count for residue ASN39A does not match expected count 129: Warning: Atom Count for residue GLU53A does not match expected count 129: Warning: Atom Count for residue ARG64A does not match expected count 129: Warning: Atom Count for residue LYS80A does not match expected count 129: Warning: Atom Count for residue GLU150A does not match expected count 129: Warning: Atom Count for residue ASN157A does not match expected count 129: Warning: Atom Count for residue GLU5A does not match expected count 120: =>start test morse custom 120: [04:01:48] test on : 365 molecules done 128: Warning: Atom Count for residue ASN39A does not match expected count 128: Warning: Atom Count for residue GLU53A does not match expected count 128: Warning: Atom Count for residue ARG64A does not match expected count 129: Warning: Atom Count for residue ASN39A does not match expected count 128: Warning: Atom Count for residue LYS80A does not match expected count 129: Warning: Atom Count for residue GLU53A does not match expected count 130: ........ 130: ---------------------------------------------------------------------- 130: Ran 8 tests in 0.164s 130: 130: OK 120: =>start test AUTOCORR3D custom 120: [04:01:49] test on : 365 molecules done 123/246 Test #130: pyMolDescriptors3D ..................... Passed 0.53 sec test 131 Start 131: testFingerprints 131: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/testFingerprints 131: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints 131: Test timeout computed to be: 7200 129: Warning: Atom Count for residue ARG64A does not match expected count 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: Atoms: 131: 0 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 1 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 2 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 3 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 4 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 5 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 6 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 7 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 8 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 9 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 10 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: 1 conj?: 1 131: 1 1->2 order: a conj?: 1 aromatic?: 1 131: 2 2->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: a conj?: 1 aromatic?: 1 131: 4 4->5 order: a conj?: 1 aromatic?: 1 131: 5 5->6 order: a conj?: 1 aromatic?: 1 131: 6 6->7 order: a conj?: 1 aromatic?: 1 131: 7 7->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: 1 conj?: 1 131: 9 8->10 order: a conj?: 1 aromatic?: 1 131: 10 10->1 order: a conj?: 1 aromatic?: 1 131: 11 7->3 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: SMI: Oc1cc2[nH]cnc2c(O)n1 131: Atoms: 131: 0 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 1 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 2 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 3 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 4 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 5 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 6 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 7 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 8 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 9 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 10 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: 1 conj?: 1 131: 1 1->2 order: a conj?: 1 aromatic?: 1 131: 2 2->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: a conj?: 1 aromatic?: 1 131: 4 4->5 order: a conj?: 1 aromatic?: 1 131: 5 5->6 order: a conj?: 1 aromatic?: 1 131: 6 6->7 order: a conj?: 1 aromatic?: 1 131: 7 7->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: 1 conj?: 1 131: 9 8->10 order: a conj?: 1 aromatic?: 1 131: 10 10->1 order: a conj?: 1 aromatic?: 1 131: 11 7->3 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: SMI: c1(O)cc2[nH]cnc2c(O)n1 131: Atoms: 131: 0 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 1 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 2 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 3 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 4 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 5 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 6 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 7 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 8 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 9 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 10 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: 1 conj?: 1 131: 1 0->2 order: a conj?: 1 aromatic?: 1 131: 2 2->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: a conj?: 1 aromatic?: 1 131: 4 4->5 order: a conj?: 1 aromatic?: 1 131: 5 5->6 order: a conj?: 1 aromatic?: 1 131: 6 6->7 order: a conj?: 1 aromatic?: 1 131: 7 7->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: 1 conj?: 1 131: 9 8->10 order: a conj?: 1 aromatic?: 1 131: 10 10->0 order: a conj?: 1 aromatic?: 1 131: 11 7->3 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: SMI: c1c(O)nc(O)c2c1[nH]cn2 131: Atoms: 131: 0 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 1 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 2 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 3 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 4 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 5 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 6 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 7 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 8 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 9 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 10 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: a conj?: 1 aromatic?: 1 131: 1 1->2 order: 1 conj?: 1 131: 2 1->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: a conj?: 1 aromatic?: 1 131: 4 4->5 order: 1 conj?: 1 131: 5 4->6 order: a conj?: 1 aromatic?: 1 131: 6 6->7 order: a conj?: 1 aromatic?: 1 131: 7 7->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: a conj?: 1 aromatic?: 1 131: 9 9->10 order: a conj?: 1 aromatic?: 1 131: 10 7->0 order: a conj?: 1 aromatic?: 1 131: 11 10->6 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: SMI: c12cc(O)nc(O)c1nc[nH]2 131: Atoms: 131: 0 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 1 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 2 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 3 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 4 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 5 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 6 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 7 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 8 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 9 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 10 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: a conj?: 1 aromatic?: 1 131: 1 1->2 order: a conj?: 1 aromatic?: 1 131: 2 2->3 order: 1 conj?: 1 131: 3 2->4 order: a conj?: 1 aromatic?: 1 131: 4 4->5 order: a conj?: 1 aromatic?: 1 131: 5 5->6 order: 1 conj?: 1 131: 6 5->7 order: a conj?: 1 aromatic?: 1 131: 7 7->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: a conj?: 1 aromatic?: 1 131: 9 9->10 order: a conj?: 1 aromatic?: 1 131: 10 7->0 order: a conj?: 1 aromatic?: 1 131: 11 10->0 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: SMI: [nH]1c2cc(O)nc(O)c2nc1 131: Atoms: 131: 0 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 1 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 2 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 3 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 4 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 5 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 6 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 7 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 8 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 9 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 10 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: a conj?: 1 aromatic?: 1 131: 1 1->2 order: a conj?: 1 aromatic?: 1 131: 2 2->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: 1 conj?: 1 131: 4 3->5 order: a conj?: 1 aromatic?: 1 131: 5 5->6 order: a conj?: 1 aromatic?: 1 131: 6 6->7 order: 1 conj?: 1 131: 7 6->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: a conj?: 1 aromatic?: 1 131: 9 9->10 order: a conj?: 1 aromatic?: 1 131: 10 10->0 order: a conj?: 1 aromatic?: 1 131: 11 8->1 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: SMI: c1[nH]c2cc(O)nc(O)c2n1 131: Atoms: 131: 0 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 1 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 2 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 3 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 4 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 5 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 6 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 7 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 8 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 9 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 10 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: a conj?: 1 aromatic?: 1 131: 1 1->2 order: a conj?: 1 aromatic?: 1 131: 2 2->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: a conj?: 1 aromatic?: 1 131: 4 4->5 order: 1 conj?: 1 131: 5 4->6 order: a conj?: 1 aromatic?: 1 131: 6 6->7 order: a conj?: 1 aromatic?: 1 131: 7 7->8 order: 1 conj?: 1 131: 8 7->9 order: a conj?: 1 aromatic?: 1 131: 9 9->10 order: a conj?: 1 aromatic?: 1 131: 10 10->0 order: a conj?: 1 aromatic?: 1 131: 11 9->2 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: SMI: n1c[nH]c2cc(O)nc(O)c21 131: Atoms: 131: 0 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 1 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 2 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 3 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 4 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 5 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 6 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 7 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 8 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 9 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 10 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: a conj?: 1 aromatic?: 1 131: 1 1->2 order: a conj?: 1 aromatic?: 1 131: 2 2->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: a conj?: 1 aromatic?: 1 131: 4 4->5 order: a conj?: 1 aromatic?: 1 131: 5 5->6 order: 1 conj?: 1 131: 6 5->7 order: a conj?: 1 aromatic?: 1 131: 7 7->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: 1 conj?: 1 131: 9 8->10 order: a conj?: 1 aromatic?: 1 131: 10 10->0 order: a conj?: 1 aromatic?: 1 131: 11 10->3 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: SMI: c12c(cc(O)nc1O)[nH]cn2 131: Atoms: 131: 0 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 1 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 2 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 3 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 4 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 5 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 6 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 7 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 8 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 9 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 10 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: a conj?: 1 aromatic?: 1 131: 1 1->2 order: a conj?: 1 aromatic?: 1 131: 2 2->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: 1 conj?: 1 131: 4 3->5 order: a conj?: 1 aromatic?: 1 131: 5 5->6 order: a conj?: 1 aromatic?: 1 131: 6 6->7 order: 1 conj?: 1 131: 7 1->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: a conj?: 1 aromatic?: 1 131: 9 9->10 order: a conj?: 1 aromatic?: 1 131: 10 6->0 order: a conj?: 1 aromatic?: 1 131: 11 10->0 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: SMI: c1(O)c2c(cc(O)n1)[nH]cn2 131: Atoms: 131: 0 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 1 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 2 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 3 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 4 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 5 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 6 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 7 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 8 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 9 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 10 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: 1 conj?: 1 131: 1 0->2 order: a conj?: 1 aromatic?: 1 131: 2 2->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: a conj?: 1 aromatic?: 1 131: 4 4->5 order: a conj?: 1 aromatic?: 1 131: 5 5->6 order: 1 conj?: 1 131: 6 5->7 order: a conj?: 1 aromatic?: 1 131: 7 3->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: a conj?: 1 aromatic?: 1 131: 9 9->10 order: a conj?: 1 aromatic?: 1 131: 10 7->0 order: a conj?: 1 aromatic?: 1 131: 11 10->2 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: SMI: Oc1c2c(cc(O)n1)[nH]cn2 131: Atoms: 131: 0 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 1 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 2 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 3 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 4 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 5 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 6 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 7 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 8 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 9 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 10 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: Bonds: 131: 0 0->1 order: 1 conj?: 1 131: 1 1->2 order: a conj?: 1 aromatic?: 1 131: 2 2->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: a conj?: 1 aromatic?: 1 131: 4 4->5 order: a conj?: 1 aromatic?: 1 131: 5 5->6 order: 1 conj?: 1 131: 6 5->7 order: a conj?: 1 aromatic?: 1 131: 7 3->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: a conj?: 1 aromatic?: 1 131: 9 9->10 order: a conj?: 1 aromatic?: 1 131: 10 7->1 order: a conj?: 1 aromatic?: 1 131: 11 10->2 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: SMI: n1c(O)cc2[nH]cnc2c1O 131: Atoms: 131: 0 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 1 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 2 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: 3 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 4 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 5 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 6 6 C chg: 0 deg: 2 exp: 3 imp: 1 hyb: SP2 arom?: 1 131: 7 7 N chg: 0 deg: 2 exp: 3 imp: 0 hyb: SP2 arom?: 1 131: 8 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 9 6 C chg: 0 deg: 3 exp: 4 imp: 0 hyb: SP2 arom?: 1 131: 10 8 O chg: 0 deg: 1 exp: 1 imp: 1 hyb: SP2 131: Bonds: 131: 0 0->1 order: a conj?: 1 aromatic?: 1 131: 1 1->2 order: 1 conj?: 1 131: 2 1->3 order: a conj?: 1 aromatic?: 1 131: 3 3->4 order: a conj?: 1 aromatic?: 1 131: 4 4->5 order: a conj?: 1 aromatic?: 1 131: 5 5->6 order: a conj?: 1 aromatic?: 1 131: 6 6->7 order: a conj?: 1 aromatic?: 1 131: 7 7->8 order: a conj?: 1 aromatic?: 1 131: 8 8->9 order: a conj?: 1 aromatic?: 1 131: 9 9->10 order: 1 conj?: 1 131: 10 9->0 order: a conj?: 1 aromatic?: 1 131: 11 8->4 order: a conj?: 1 aromatic?: 1 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: 131: 131: 131: 131: 131: 131: 131: 131: ------------------- 131: 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Morgan Fingerprints. 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Morgan Fingerprints using fromAtoms argument. 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Morgan Fingerprints as bit vects. 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Morgan Fingerprints with feature invariants. 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test additional Morgan fingerprints options. 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Atom Codes. 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Atom Pairs. 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Atom Pairs part 2. 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Topological Torsions. 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Bulk Topological Torsions. 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: Warning: Atom Count for residue LYS80A does not match expected count 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Hashed Atom Pairs. 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Hashed torsions. 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Rooted Atom Pairs. 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test ignoring atoms in Atom Pairs. 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Rooted Topological Torsions. 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test ignoring atoms in Topological Torsions. 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test atom info from morgan fingerprints. 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test atom info from morgan fingerprints including Info Redundant Environments. 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] ------------------------------------- 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] ------------------------------------- 131: [04:01:49] ------------------------------------- 131: [04:01:49] ------------------------------------- 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Atom Pairs including info about chirality. 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test Topological Torsions including info about chirality. 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test GitHub Issue 25: fingerprint backwards compatibility. 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test GitHub Issue 151: PatternFingerprint problems 120: =>start test 2 WHIM custom 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test 3D atom pairs. 120: [04:01:49] test on : 365 molecules done 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test GitHub Issue 195: GenMACCSKeys() raises an exception with an empty molecule 131: [04:01:49] done 131: [04:01:49] ------------------------------------- 131: [04:01:49] Test multithreading with the pattern FP 131: reading molecules 131: pass 1 131: launch :0 131: launch :1 131: launch :2 131: launch :3 129: Warning: Atom Count for residue GLU150A does not match expected count 128: Warning: Atom Count for residue GLU150A does not match expected count 129: Warning: Atom Count for residue ASN157A does not match expected count 128: Warning: Atom Count for residue ASN157A does not match expected count 131: pass 2 131: launch :0 131: launch :1 131: launch :2 131: launch :3 120: =>start test 1 WHIM custom 120: [04:01:49] test on : 365 molecules done 125: =>start test GETAWAY 125: [04:01:50] test on : 365 molecules done 124/246 Test #125: testGETAWAY ............................ Passed 2.17 sec test 132 Start 132: testMHFPFingerprint 132: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/testMHFPFingerprint 132: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints 132: Test timeout computed to be: 7200 132: [04:01:50] ------------------------------------- 132: [04:01:50] Test MHFP fingerprint encoder initialization 132: [04:01:50] done 132: [04:01:50] ------------------------------------- 132: [04:01:50] Test MHFP shingling creation 132: [04:01:50] done 132: [04:01:50] ------------------------------------- 132: [04:01:50] Test MHFP hashing of string and uint arrays 132: [04:01:50] done 132: [04:01:50] ------------------------------------- 132: [04:01:50] Test SECFP fingerprint functionality 132: [04:01:50] done 125/246 Test #132: testMHFPFingerprint .................... Passed 0.13 sec test 133 Start 133: testFingerprintGenerators 133: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/testFingerprintGenerators 133: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints 133: Test timeout computed to be: 7200 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test atom-pair fp generator 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test atom-pair fp generator with different arguments 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test compatibility between atom pair implementation for FingerprintGenerator and old atom pairs implementation 133: [04:01:50] DEPRECATION WARNING: please use AtomPairGenerator 133: [04:01:50] DEPRECATION WARNING: please use AtomPairGenerator 133: [04:01:50] DEPRECATION WARNING: please use AtomPairGenerator 133: [04:01:50] DEPRECATION WARNING: please use AtomPairGenerator 133: [04:01:50] DEPRECATION WARNING: please use AtomPairGenerator 133: [04:01:50] DEPRECATION WARNING: please use AtomPairGenerator 133: [04:01:50] DEPRECATION WARNING: please use AtomPairGenerator 133: [04:01:50] DEPRECATION WARNING: please use AtomPairGenerator 133: [04:01:50] DEPRECATION WARNING: please use AtomPairGenerator 133: [04:01:50] DEPRECATION WARNING: please use AtomPairGenerator 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test atom-pair additional output 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test Folded Atom Pairs. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test Rooted Atom Pairs. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test ignoring atoms in Atom Pairs. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test Atom Pairs including info about chirality. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test Morgan Fingerprints. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test morgan fp generator 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test Morgan Fingerprints using fromAtoms argument. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test Morgan Fingerprints as bit vects. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test Morgan Fingerprints with feature invariants. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test additional Morgan fingerprints options. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test GitHub Issue 695: Include cis/trans stereochemistry when useChirality=true with the morgan fingerprints 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Single atoms setting radius 1 bits in Morgan fingerprints 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test different invariant generator combinations 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test invariant overriding 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test RDKit fp generator 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test unfolded version of RDKFP 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test topological torsion fp generator 133: [04:01:50] DEPRECATION WARNING: please use TopologicalTorsionGenerator 133: [04:01:50] DEPRECATION WARNING: please use TopologicalTorsionGenerator 133: [04:01:50] DEPRECATION WARNING: please use TopologicalTorsionGenerator 133: [04:01:50] DEPRECATION WARNING: please use TopologicalTorsionGenerator 133: [04:01:50] DEPRECATION WARNING: please use TopologicalTorsionGenerator 133: [04:01:50] DEPRECATION WARNING: please use TopologicalTorsionGenerator 133: [04:01:50] DEPRECATION WARNING: please use TopologicalTorsionGenerator 133: [04:01:50] DEPRECATION WARNING: please use TopologicalTorsionGenerator 133: [04:01:50] DEPRECATION WARNING: please use TopologicalTorsionGenerator 133: [04:01:50] DEPRECATION WARNING: please use TopologicalTorsionGenerator 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test Topological Torsions. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test Folded torsions. 133: [04:01:50] done 133: [04:01:50] ------------------------------------- 133: [04:01:50] Test Bulk Topological Torsions. 133: [04:01:51] done 133: [04:01:51] ------------------------------------- 133: [04:01:51] Test Rooted Topological Torsions. 133: [04:01:51] done 133: [04:01:51] ------------------------------------- 133: [04:01:51] Test ignoring atoms in Topological Torsions. 133: [04:01:51] done 133: [04:01:51] ------------------------------------- 133: [04:01:51] ------------------------------------- 133: [04:01:51] Test Topological Torsions including info about chirality. 133: [04:01:51] done 133: [04:01:51] ------------------------------------- 133: [04:01:51] Test GitHub Issue 25: fingerprint backwards compatibility. 133: [04:01:51] done 133: [04:01:51] ------------------------------------- 133: [04:01:51] Test GitHub Issue 334: explicit Hs in SMILES modifies atom pair (and topological torsion) FP. 133: [04:01:51] done 133: [04:01:51] ------------------------------------- 133: [04:01:51] Test GitHub Issue 811: rooted atom fingerprint non identical for the same molecules #811 133: [04:01:51] done 133: [04:01:51] ------------------------------------- 133: [04:01:51] Test convenience and bulk fp calculation functions 133: [04:01:51] done 133: [04:01:51] ------------------------------------- 133: [04:01:51] Test GitHub Issue #6958 133: [04:01:51] DEPRECATION WARNING: please use AtomPairGenerator 126/246 Test #133: testFingerprintGenerators .............. Passed 0.99 sec test 134 Start 134: fpTestCatch 134: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/fpTestCatch 134: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints 134: Test timeout computed to be: 7200 134: Randomness seeded to: 1977893588 134: =============================================================================== 134: All tests passed (188 assertions in 16 test cases) 134: 127/246 Test #134: fpTestCatch ............................ Passed 0.04 sec test 135 Start 135: fpGenTestCatch 135: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/fpGenTestCatch 135: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints 135: Test timeout computed to be: 7200 135: Randomness seeded to: 3699351510 135: =============================================================================== 135: All tests passed (2737 assertions in 7 test cases) 135: 128/246 Test #135: fpGenTestCatch ......................... Passed 0.11 sec test 136 Start 136: pyTestGenerator 136: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Wrap/testGenerators.py" 136: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/Wrap 136: Test timeout computed to be: 7200 136: .............. 136: ---------------------------------------------------------------------- 136: Ran 14 tests in 0.061s 136: 136: OK 129/246 Test #136: pyTestGenerator ........................ Passed 0.25 sec test 137 Start 137: pyTestMHFP 137: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Fingerprints/Wrap/testMHFP.py" 137: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Fingerprints/Wrap 137: Test timeout computed to be: 7200 137: ... 137: ---------------------------------------------------------------------- 137: Ran 3 tests in 0.235s 137: 137: OK 130/246 Test #137: pyTestMHFP ............................. Passed 0.69 sec test 138 Start 138: testPartialCharges 138: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges/testPartialCharges 138: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges 138: Test timeout computed to be: 7200 131/246 Test #138: testPartialCharges ..................... Passed 0.04 sec test 139 Start 139: pyPartialCharges 139: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py" 139: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/PartialCharges/Wrap 139: Test timeout computed to be: 7200 120: =>start test GETAWAY custom 120: [04:01:52] test on : 365 molecules done 132/246 Test #120: testRDFcustom .......................... Passed 6.39 sec test 140 Start 140: testMolTransforms 140: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms/testMolTransforms 140: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms 140: Test timeout computed to be: 7200 140: *********************************************************** 140: Testing MolTransforms 140: --------------------------------- 140: test1Canonicalization 140: 140: --------------------------------- 140: testGetSetBondLength 140: 140: --------------------------------- 140: testGetSetAngle 140: 140: --------------------------------- 140: testGetSetDihedral 140: 140: --------------------------------- 140: testGetSetDihedralThroughTripleBond 140: 140: --------------------------------- 140: testGithub1262: PMI descriptors incorrect 140: 140: --------------------------------- 140: testGithub1908: CanonicalizeMol() distorting bond lengths 140: 140: --------------------------------- 140: testGithub4302: native computeCanonicalTransform() generates non-canonical coords 140: 140: --------------------------------- 140: testWeightedCentroid 140: 140: *********************************************************** 133/246 Test #140: testMolTransforms ...................... Passed 0.08 sec test 141 Start 141: molTransformsTestCatch 141: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms/molTransformsTestCatch 141: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms 141: Test timeout computed to be: 7200 141: Randomness seeded to: 2875721284 141: =============================================================================== 141: All tests passed (8 assertions in 2 test cases) 141: 134/246 Test #141: molTransformsTestCatch ................. Passed 0.04 sec test 142 Start 142: pyMolTransforms 142: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py" 142: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolTransforms/Wrap 142: Test timeout computed to be: 7200 129: Warning: Atom Count for residue GLU5A does not match expected count 129: Warning: Atom Count for residue ASN39A does not match expected count 129: Warning: Atom Count for residue GLU53A does not match expected count 129: Warning: Atom Count for residue ARG64A does not match expected count 129: Warning: Atom Count for residue LYS80A does not match expected count 129: Warning: Atom Count for residue GLU150A does not match expected count 129: Warning: Atom Count for residue ASN157A does not match expected count 139: ....... 139: ---------------------------------------------------------------------- 139: Ran 7 tests in 0.134s 139: 139: OK 129: .[04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: .[04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: ..[04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 129: .[04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: ...[04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 129: [04:01:53] DEPRECATION WARNING: please use MorganGenerator 135/246 Test #139: pyPartialCharges ....................... Passed 0.64 sec test 143 Start 143: forceFieldHelpersCatch 143: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/forceFieldHelpersCatch 143: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers 143: Test timeout computed to be: 7200 129: ....[04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 129: ....[04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 129: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 129: .[04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: ..[04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: .[04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 129: ... 129: ---------------------------------------------------------------------- 129: Ran 31 tests in 4.599s 129: 129: OK 129: exactmw 78.046950192 129: amw 78.11399999999999 129: lipinskiHBA 0.0 129: lipinskiHBD 0.0 129: NumRotatableBonds 0.0 129: NumHBD 0.0 129: NumHBA 0.0 129: NumHeavyAtoms 6.0 129: NumAtoms 12.0 129: NumHeteroatoms 0.0 129: NumAmideBonds 0.0 129: FractionCSP3 0.0 129: NumRings 1.0 129: NumAromaticRings 1.0 129: NumAliphaticRings 0.0 129: NumSaturatedRings 0.0 129: NumHeterocycles 0.0 129: NumAromaticHeterocycles 0.0 129: NumSaturatedHeterocycles 0.0 129: NumAliphaticHeterocycles 0.0 129: NumSpiroAtoms 0.0 129: NumBridgeheadAtoms 0.0 129: NumAtomStereoCenters 0.0 129: NumUnspecifiedAtomStereoCenters 0.0 129: labuteASA 37.43140311949697 129: tpsa 0.0 129: CrippenClogP 1.6866 129: CrippenMR 26.441999999999993 129: chi0v 3.464101615137755 129: chi1v 2.0000000000000004 129: chi2v 0.6666666666666671 129: chi3v 0.6666666666666671 129: chi4v 0.38490017945975075 129: chi0n 3.464101615137755 129: chi1n 2.0000000000000004 129: chi2n 0.6666666666666671 129: chi3n 0.6666666666666671 129: chi4n 0.38490017945975075 129: hallKierAlpha -0.78 129: kappa1 3.4115708812260532 129: kappa2 1.6057694396735218 129: kappa3 0.5823992601400448 129: Phi 0.9130327103921437 129: CustomNumAtoms 6.0 129: exactmw 78.046950192 129: lipinskiHBA 0.0 143: Randomness seeded to: 3072194305 143: =============================================================================== 143: All tests passed (17 assertions in 2 test cases) 143: 136/246 Test #143: forceFieldHelpersCatch ................. Passed 0.06 sec test 144 Start 144: testMMFFForceFieldHelpers 144: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFForceFieldHelpers 144: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF 144: Test timeout computed to be: 7200 144: [04:01:53] ------------------------------------- 144: [04:01:53] Test MMFF atom types. 144: [04:01:53] done 144: [04:01:53] ------------------------------------- 144: [04:01:53] Testing MMFF builder tools. 137/246 Test #129: pyMolDescriptors ....................... Passed 4.97 sec test 145 Start 145: testMMFFForceFieldHelpersMultiThread 145: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFForceFieldHelpersMultiThread 145: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF 145: Test timeout computed to be: 7200 144: [04:01:53] done 144: [04:01:53] ------------------------------------- 144: [04:01:53] Testing MMFF builder+minimization. 145: [04:01:53] ------------------------------------- 145: [04:01:53] Test MMFF multithreading 145: processing 145: launch :0 145: launch :1 145: launch :2 145: launch :3 145: launch :4 145: launch :5 145: launch :6 145: launch :7 145: launch :8 145: launch :9 145: launch :10 145: launch :11 145: launch :12 145: launch :13 145: launch :14 145: launch :15 145: launch :16 145: launch :17 145: launch :18 145: launch :19 145: launch :20 145: launch :21 145: launch :22 145: launch :23 144: [04:01:53] done 144: [04:01:53] ------------------------------------- 144: [04:01:53] Testing Issue239. 144: [04:01:53] done 144: [04:01:53] ------------------------------------- 144: [04:01:53] Testing calcEnergy with passed coords. 144: [04:01:53] done 144: [04:01:53] ------------------------------------- 144: [04:01:53] Testing calcGrad. 144: [04:01:53] done 144: [04:01:53] ------------------------------------- 144: [04:01:53] Testing Issue242. 144: [04:01:53] done 144: [04:01:53] ------------------------------------- 144: [04:01:53] Testing github 308: crash during MMFF parameterization . 144: [04:01:53] ------------------------------------- 144: [04:01:53] Testing SFIssue1653802. 144: [04:01:53] done 144: [04:01:53] ------------------------------------- 144: [04:01:53] Testing SFIssue2378119. 144: [04:01:53] done 144: [04:01:53] ------------------------------------- 144: [04:01:53] Test MMFF force-field parameter getters. 144: [04:01:53] ------------------------------------- 144: [04:01:53] Test MMFF multithreading 142: ........ 142: ---------------------------------------------------------------------- 142: Ran 8 tests in 0.107s 142: 142: OK 144: generating reference data 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Test GitHub Issue 258: Bad pattern fingerprint for query molecule 145: done 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Test GitHub Issue 334: explicit Hs in SMILES modifies atom pair (and topological torsion) FP. 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Test GitHub Issue 695: Include cis/trans stereochemistry when useChirality=true with the morgan fingerprints 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Test GitHub Issue 811: rooted atom fingerprint non identical for the same molecules #811 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Test unfolded version of RDKFP 131: [04:01:53] ------------------------------------- 131: [04:01:53] Test bitinfo of RDKFP 131: 562: [ 2 ], 131: 709: [ 0 1 ], 131: 1118: [ 0 1 2 ], 131: 1183: [ 1 2 ], 131: 1233: [ 0 1 2 ], 131: 1308: [ 0 ], [ 1 ], 131: 1339: [ 2 ], 131: 1728: [ 1 2 ], 131: 1772: [ 0 ], [ 1 ], 131: 1813: [ 0 1 ], 131: ------------ 131: [04:01:53] ------------------------------------- 131: [04:01:53] Single atoms setting radius 1 bits in Morgan fingerprints 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Github #879: Pattern fingerprint should set bits for single-atom fragments. 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Github #1496: Pattern fingerprint setting bad bits for degree zero atoms 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Github #1793: Fingerprint segfaults with branchedPaths=False and useHs=False 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Github #1993: fingerprinters that use R/S labels should force a call to assignStereochemistry() if it hasn't already been called 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use AtomPairGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] DEPRECATION WARNING: please use TopologicalTorsionGenerator 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Github #2115: BitInfo not complete for RDKFingerprint 131: [04:01:53] done 131: [04:01:53] ------------------------------------- 131: [04:01:53] Github #3723: Fingerprint crash for mols with Zero order bonds 131: [04:01:53] done 138/246 Test #131: testFingerprints ....................... Passed 4.47 sec test 146 Start 146: testUFFForceFieldHelpers 146: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/testUFFForceFieldHelpers 146: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF 146: Test timeout computed to be: 7200 145: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Test UFF atom labels. 139/246 Test #142: pyMolTransforms ........................ Passed 0.62 sec test 147 Start 147: testCrystalForceField 147: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalForceField 147: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF 147: Test timeout computed to be: 7200 140/246 Test #145: testMMFFForceFieldHelpersMultiThread ... Passed 0.37 sec test 148 Start 148: pyForceFieldHelpers 148: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py" 148: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap 148: Test timeout computed to be: 7200 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Test UFF atom typer. 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Testing UFF builder tools. 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Testing UFF builder+minimization. 147: ------------------------------------- 147: Test CrystalFF torsional term. 141/246 Test #147: testCrystalForceField .................. Passed 0.17 sec test 149 Start 149: testDistGeomHelpers 149: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers/testDistGeomHelpers 149: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers 149: Test timeout computed to be: 7200 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Testing UFF special cases. 146: [04:01:53] UFFTYPER: Unrecognized charge state for atom: 0 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Testing Issue239. 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Testing calcEnergy with passed coords. 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Testing calcGrad. 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Testing SFIssue1653802. 149: [04:01:53] ******************************************************** 149: [04:01:53] Testing DistGeomHelpers 149: [04:01:53] --------------------------------- 149: [04:01:53] test2 149: 149: go 149: ------------------------------------- 149: 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Testing SFIssue2378119. 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Test UFF force-field parameter getters. 146: [04:01:53] ------------------------------------- 146: [04:01:53] Testing handling missing parameters. 146: [04:01:53] UFFTYPER: Unrecognized hybridization for atom: 0 146: [04:01:53] UFFTYPER: Unrecognized atom type: Cu+1 (0) 146: [04:01:53] UFFTYPER: Unrecognized hybridization for atom: 0 146: [04:01:53] UFFTYPER: Unrecognized atom type: Cu+1 (0) 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Testing SFIssue3009337. 146: [04:01:53] done 146: [04:01:53] ------------------------------------- 146: [04:01:53] Test UFF multithreading 146: generating reference data 128: Warning: Atom Count for residue GLU5A does not match expected count 128: Warning: Atom Count for residue ASN39A does not match expected count 128: Warning: Atom Count for residue GLU53A does not match expected count 128: Warning: Atom Count for residue ARG64A does not match expected count 128: Warning: Atom Count for residue LYS80A does not match expected count 128: Warning: Atom Count for residue GLU150A does not match expected count 128: Warning: Atom Count for residue ASN157A does not match expected count 128: =============================================================================== 128: All tests passed (789 assertions in 11 test cases) 128: 142/246 Test #128: descriptorsTestCatch ................... Passed 5.68 sec test 150 Start 150: distGeomHelpersCatch 150: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers/distGeomHelpersCatch 150: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers 150: Test timeout computed to be: 7200 150: Randomness seeded to: 2998041435 148: [04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: ..[04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: .[04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 144: processing 144: launch :0 144: launch :1 144: launch :2 144: launch :3 144: [04:01:54] Rep: 0 Mol:3 144: [04:01:54] Rep: 0 Mol:1 144: [04:01:54] Rep: 0 Mol:5 144: [04:01:54] Rep: 0 Mol:2 144: [04:01:54] Rep: 0 Mol:0 148: .[04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:54] Rep: 0 Mol:9 144: [04:01:54] Rep: 0 Mol:13 144: [04:01:54] Rep: 0 Mol:4 150: [04:01:54] [C:1][NH:2]!@;-[C:3](=[NH2:4])[NH2]: 100 101 102 104, [(1 0), (-1 100), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [NH2][C:1](=[NH2])[NH:2]!@;-[CH2:3][C:4]: 102 101 100 99, [(1 0), (1 0), (1 2.5), (1 0), (1 0), (1 0)] 144: [04:01:54] Rep: 0 Mol:17 144: [04:01:54] Rep: 0 Mol:6 144: [04:01:54] Rep: 0 Mol:8 150: [04:01:54] [OX2:1][CX4:2]!@;-[CX4:3][N:4]: 32 31 30 33, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [OX2:1][CX4:2]!@;-[CX4:3][N:4]: 48 46 45 49, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 36 37 38 39, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 37 38 39 40, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 38 39 40 41, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 97 98 99 100, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4H2:2]!@;-[CX4H2:3][!#1:4]: 98 99 100 101, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 0 1 2 3, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 1 2 4 5, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 20 22 23 24, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 22 23 25 26, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 34 36 37 38, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 66 67 68 69, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 84 85 86 87, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4:2]!@;-[CX4:3][!#1:4]: 96 97 98 99, [(1 0), (1 0), (1 7), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][CX4H2:2]!@;-[CX3:3]=[O:4]: 85 86 87 88, [(1 -1), (1 -0.5), (1 -0.2), (1 -0.3), (1 0), (1 -0.3)] 150: [04:01:54] [cH1:1][c:2]([cH1])!@;-[CX4H2:3][CX4:4]: 70 69 68 67, [(1 0), (1 3.6), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [*:1][X3,X2:2]=[X3,X2:3][*:4]: 101 102 104 220, [(1 0), (-1 100), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H0;r:3][CX4H1:4]: 15 13 12 8, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H0;r:3][CX4H1:4]: 22 20 19 15, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H0;r:3][CX4H1:4]: 67 75 77 81, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 4 62 61 60, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 8 6 5 4, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 30 28 27 22, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 36 34 33 30, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 45 43 42 36, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 81 82 84 85, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 93 94 96 97, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 97 105 107 52, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 90 92 93 94, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 6 5 4 117, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 28 27 22 133, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 34 33 30 144, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 43 42 36 149, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 62 61 60 181, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 82 84 85 202, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 94 96 97 210, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 105 107 52 171, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 144: [04:01:54] Rep: 0 Mol:10 144: [04:01:54] Rep: 0 Mol:12 144: [04:01:54] Rep: 0 Mol:16 150: [04:01:54] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 91 90 92 93, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 43 45 49 50, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 52 50 49 45, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 60 64 66 67, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][CX4;r{9-}:2]@;-[NX3;r{9-}:3][C:4]: 68 67 66 64, [(1 0), (1 0), (1 1), (1 0), (1 0), (1 0)] 150: [04:01:54] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 95 94 93 92, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [OX2:1][CX4;r{9-}:2]@;-[CX4;r{9-}:3][N:4]: 51 50 52 107, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [OX2:1][CX4;r{9-}:2]@;-[CX4;r{9-}:3][N:4]: 65 64 60 61, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 50 52 53 54, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 58 59 60 61, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 150: [04:01:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 5 4 62 63, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 27 22 20 21, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 33 30 28 29, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 42 36 34 35, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 49 45 43 44, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 66 67 75 76, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 84 85 90 91, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [NH1:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 96 97 105 106, [(1 0), (-1 3), (1 0), (1 0), (1 0), (1 0)] 144: [04:01:54] Rep: 0 Mol:21 148: .[04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 150: ----------- 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 2 1 10 9, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 14 12 11 9, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 4 3 2 1, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 16 15 14 12, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 1 10 9 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 12 11 9 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 5 4 3 2, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 17 16 15 14, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 0 1 2 3, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 13 12 14 15, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 4 6 7 8, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 6 7 8 9, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 150: [04:01:54] [!#1:1][CX4&r;r{9-}:2]@;-[CX4&r;r{9-}:3][!#1:4]: 7 8 9 10, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 4 6 16 17, [(1 0), (1 0), (-1 1), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][CX4;r{9-}:2]@;-[CX3;r{9-}:3]=[O:4]: 7 6 4 5, [(1 0), (1 0), (-1 1), (1 0), (1 0), (1 0)] 144: [04:01:54] [04:01:54] Rep: 0 Mol:25 144: [04:01:54] Rep: 0 Mol:20 144: Rep: 0 Mol:7 144: [04:01:54] Rep: 0 Mol:11 150: ----------- 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 13 14 16 3, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 144: [04:01:54] Rep: 0 Mol:24 144: [04:01:54] Rep: 0 Mol:15 150: [04:01:54] [$([CX3]=O):1][NX3H1;r{9-}:2]@;-[CX4H2;r{9-}:3][C:4]: 10 12 13 14, [(1 0), (1 0), (1 4), (1 0), (1 0), (1 0)] 144: [04:01:54] Rep: 0 Mol:19 144: [04:01:54] Rep: 0 Mol:29 150: [04:01:54] [O:1]=[CX3;r{9-}:2]@;-[NX3H1;r{9-}:3][!#1:4]: 11 10 12 13, [(-1 100), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] N[C;r{9-}:2](=[O:1])@;-[CH2;r{9-}:3][N:4]: 15 14 13 12, [(1 0), (-1 10), (1 0), (1 0), (1 0), (1 0)] 150: ----------- 144: [04:01:54] Rep: 0 Mol:28 148: .[04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:54] Rep: 0 Mol:23 144: [04:01:54] Rep: 0 Mol:27 150: ----------- 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 2 1 15 14, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 2 3 5 6, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 10 8 7 6, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 10 11 13 14, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 19 17 16 14, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [C:1][C;r{9-}:2](=O)@;-[NX3H1;r:3][CX4H1:4]: 19 20 22 6, [(1 0), (-1 8), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 1 15 14 31, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 3 5 6 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 8 7 6 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 11 13 14 31, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 17 16 14 31, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [$(C=O):1][NX3H1;r{9-}:2]@;-[CX4H1;r{9-}:3][H:4]: 20 22 6 26, [(-1 5), (1 0), (1 0), (1 0), (1 0), (1 0)] 150: [04:01:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 0 1 2 3, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 150: [04:01:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 4 3 2 1, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 150: [04:01:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 9 8 10 11, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 150: [04:01:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 12 11 10 8, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 150: [04:01:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 18 17 19 20, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 150: [04:01:54] [O:1]=[CX3;r{9-}:2]([NH1])@;-[CH2;r{9-}:3][CX3:4]=O: 21 20 19 17, [(1 0), (1 0), (1 2), (1 0), (1 0), (1 0)] 144: [04:01:54] Rep: 0 Mol:31 148: .[04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: .[04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: .[04:01:54] UFFTYPER: Unrecognized hybridization for atom: 0 148: [04:01:54] UFFTYPER: Unrecognized atom type: Cu+1 (0) 148: .[04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: .[04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: .[04:01:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: .[04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:54] Rep: 0 Mol:14 148: ...[04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:54] Rep: 0 Mol:18 144: [04:01:54] Rep: 0 Mol:22 148: [04:01:54] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:54] Rep: 0 Mol:26 144: [04:01:54] Rep: 20 Mol:0 144: [04:01:54] Rep: 20 Mol:4 144: [04:01:54] Rep: 20 Mol:8 144: [04:01:54] Rep: 20 Mol:12 144: [04:01:54] Rep: 20 Mol:16 144: [04:01:54] Rep: 20 Mol:1 144: [04:01:54] Rep: 20 Mol:5 144: [04:01:54] Rep: 20 Mol:9 144: [04:01:54] Rep: 20 Mol:13 144: [04:01:54] Rep: 20 Mol:17 144: [04:01:54] Rep: 20 Mol:20 144: [04:01:54] Rep: 20 Mol:24 144: [04:01:54] Rep: 20 Mol:28 146: processing 146: launch :0 146: launch :1 146: launch :2 146: launch :3 146: [04:01:54] Rep: 0 Mol:0 146: [04:01:54] Rep: 0 Mol:2 146: [04:01:54] Rep: 0 Mol:1 146: [04:01:54] Rep: 0 Mol:3 146: [04:01:54] Rep: 0 Mol:5 146: [04:01:54] Rep: 0 Mol:9 144: [04:01:54] Rep: 20 Mol:21 144: [04:01:54] Rep: 20 Mol:25 144: [04:01:54] Rep: 20 Mol:29 146: [04:01:54] Rep: 0 Mol:13 146: [04:01:54] Rep: 0 Mol:17 144: [04:01:54] Rep: 0 Mol:30 146: [04:01:54] Rep: 0 Mol:4 146: [04:01:54] Rep: 0 Mol:6 146: [04:01:54] Rep: 0 Mol:7 148: ... 148: ---------------------------------------------------------------------- 148: Ran 19 tests in 0.345s 148: 148: OK 146: [04:01:54] Rep: 0 Mol:10 146: [04:01:54] Rep: 0 Mol:11 146: [04:01:54] Rep: 0 Mol:15 146: [04:01:54] Rep: 0 Mol:19 146: [04:01:54] Rep: 0 Mol:21 146: [04:01:54] Rep: 0 Mol:25 150: [04:01:54] UFFTYPER: Unrecognized atom type: Pt5+2 (1) 146: [04:01:54] Rep: 0 Mol:23 146: [04:01:54] Rep: 0 Mol:27 146: [04:01:54] Rep: 0 Mol:8 146: [04:01:54] Rep: 0 Mol:31 146: [04:01:54] Rep: 0 Mol:29 146: [04:01:54] Rep: 0 Mol:12 146: [04:01:54] Rep: 0 Mol:16 146: [04:01:54] Rep: 0 Mol:14 150: [04:01:54] UFFTYPER: Unrecognized charge state for atom: 1 146: [04:01:54] Rep: 0 Mol:20 150: [04:01:54] UFFTYPER: Unrecognized charge state for atom: 1 146: [04:01:54] Rep: 0 Mol:18 146: [04:01:54] Rep: 0 Mol:24 146: [04:01:54] Rep: 0 Mol:22 146: [04:01:54] Rep: 0 Mol:26 144: [04:01:54] Rep: 20 Mol:3 144: [04:01:54] Rep: 20 Mol:7 144: [04:01:54] Rep: 20 Mol:11 144: [04:01:54] Rep: 20 Mol:15 144: [04:01:54] Rep: 20 Mol:19 144: [04:01:54] Rep: 20 Mol:23 144: [04:01:54] Rep: 20 Mol:27 144: [04:01:54] Rep: 20 Mol:31 146: [04:01:54] Rep: 0 Mol:28 150: [04:01:54] UFFTYPER: Unrecognized charge state for atom: 1 146: [04:01:54] Rep: 0 Mol:30 144: [04:01:54] Rep: 40 Mol:1 144: [04:01:54] Rep: 40 Mol:5 144: [04:01:54] Rep: 40 Mol:9 144: [04:01:54] Rep: 40 Mol:13 144: [04:01:54] Rep: 40 Mol:17 144: [04:01:54] Rep: 40 Mol:21 144: [04:01:54] Rep: 40 Mol:25 144: [04:01:54] Rep: 40 Mol:29 144: [04:01:54] Rep: 40 Mol:0 144: [04:01:54] Rep: 40 Mol:4 144: [04:01:54] Rep: 40 Mol:8 144: [04:01:54] Rep: 40 Mol:12 144: [04:01:54] Rep: 40 Mol:16 144: [04:01:54] Rep: 40 Mol:20 144: [04:01:54] Rep: 40 Mol:24 144: [04:01:54] Rep: 40 Mol:28 143/246 Test #148: pyForceFieldHelpers .................... Passed 0.94 sec test 151 Start 151: pyDistGeomHelpers 151: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py" 151: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap 151: Test timeout computed to be: 7200 150: [04:01:54] UFFTYPER: Unrecognized charge state for atom: 5 144: [04:01:54] Rep: 40 Mol:3 144: [04:01:54] Rep: 40 Mol:7 144: [04:01:54] Rep: 40 Mol:11 144: [04:01:54] Rep: 40 Mol:15 144: [04:01:54] Rep: 40 Mol:19 144: [04:01:54] Rep: 40 Mol:23 144: [04:01:54] Rep: 40 Mol:27 144: [04:01:54] Rep: 40 Mol:31 150: [04:01:54] UFFTYPER: Unrecognized charge state for atom: 5 144: [04:01:54] Rep: 60 Mol:1 144: [04:01:54] Rep: 60 Mol:5 144: [04:01:54] Rep: 60 Mol:9 144: [04:01:54] Rep: 60 Mol:13 144: [04:01:54] Rep: 60 Mol:17 144: [04:01:54] Rep: 60 Mol:21 144: [04:01:54] Rep: 60 Mol:25 144: [04:01:54] Rep: 60 Mol:29 150: [04:01:54] UFFTYPER: Unrecognized charge state for atom: 5 144: [04:01:54] Rep: 20 Mol:2 144: [04:01:54] Rep: 20 Mol:6 144: [04:01:54] Rep: 20 Mol:10 144: [04:01:54] Rep: 20 Mol:14 144: [04:01:54] Rep: 20 Mol:18 144: [04:01:54] Rep: 20 Mol:22 144: [04:01:54] Rep: 20 Mol:26 144: [04:01:54] Rep: 20 Mol:30 144: [04:01:54] Rep: 60 Mol:0 144: [04:01:54] Rep: 60 Mol:4 144: [04:01:54] Rep: 60 Mol:8 144: [04:01:54] Rep: 60 Mol:12 144: [04:01:54] Rep: 60 Mol:16 144: [04:01:54] Rep: 60 Mol:20 144: [04:01:54] Rep: 60 Mol:24 144: [04:01:54] Rep: 60 Mol:28 144: [04:01:54] Rep: 80 Mol:1 144: [04:01:54] Rep: 80 Mol:5 144: [04:01:54] Rep: 80 Mol:9 144: [04:01:54] Rep: 80 Mol:13 144: [04:01:54] Rep: 80 Mol:17 144: [04:01:54] Rep: 80 Mol:21 144: [04:01:54] Rep: 80 Mol:25 144: [04:01:54] Rep: 80 Mol:29 144: [04:01:54] Rep: 60 Mol:3 144: [04:01:54] Rep: 60 Mol:7 150: [04:01:54] UFFTYPER: Unrecognized charge state for atom: 6 144: [04:01:54] Rep: 60 Mol:11 144: [04:01:54] Rep: 60 Mol:15 144: [04:01:54] Rep: 60 Mol:19 144: [04:01:54] Rep: 60 Mol:23 144: [04:01:54] Rep: 60 Mol:27 144: [04:01:54] Rep: 60 Mol:31 98: 0,0 0 98: 0,1 0 98: 1,0 0 98: 1,1 0 98: 2,0 0 98: 2,1 0 144/246 Test #98: testEnumeration ........................ Passed 12.82 sec test 152 Start 152: testMolAlign 152: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/testMolAlign 152: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign 152: Test timeout computed to be: 7200 150: [04:01:55] UFFTYPER: Unrecognized charge state for atom: 6 146: [04:01:55] Rep: 100 Mol:3 146: [04:01:55] Rep: 100 Mol:7 146: [04:01:55] Rep: 100 Mol:11 146: [04:01:55] Rep: 100 Mol:15 146: [04:01:55] Rep: 100 Mol:19 146: [04:01:55] Rep: 100 Mol:23 146: [04:01:55] Rep: 100 Mol:27 146: [04:01:55] Rep: 100 Mol:31 150: [04:01:55] UFFTYPER: Unrecognized charge state for atom: 6 144: [04:01:55] Rep: 40 Mol:2 144: [04:01:55] Rep: 40 Mol:6 144: [04:01:55] Rep: 40 Mol:10 144: [04:01:55] Rep: 40 Mol:14 144: [04:01:55] Rep: 40 Mol:18 144: [04:01:55] Rep: 40 Mol:22 144: [04:01:55] Rep: 40 Mol:26 144: [04:01:55] Rep: 40 Mol:30 144: [04:01:55] Rep: 80 Mol:0 144: [04:01:55] Rep: 80 Mol:4 144: [04:01:55] Rep: 80 Mol:8 144: [04:01:55] Rep: 80 Mol:12 144: [04:01:55] Rep: 80 Mol:16 144: [04:01:55] Rep: 80 Mol:20 144: [04:01:55] Rep: 80 Mol:24 144: [04:01:55] Rep: 80 Mol:28 151: .[04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:55] Rep: 80 Mol:3 144: [04:01:55] Rep: 80 Mol:7 144: [04:01:55] Rep: 80 Mol:11 144: [04:01:55] Rep: 80 Mol:15 144: [04:01:55] Rep: 80 Mol:19 144: [04:01:55] Rep: 80 Mol:23 144: [04:01:55] Rep: 80 Mol:27 144: [04:01:55] Rep: 80 Mol:31 152: *********************************************************** 152: Testing MolAlign 152: --------------------------------- 152: test1MolAlign 152: 152: --------------------------------- 152: test1GetBestRMS 152: 152: --------------------------------- 152: test1MolWithQueryAlign 152: 152: --------------------------------- 152: test2AtomMap 152: 152: --------------------------------- 152: test3Weights 152: 152: --------------------------------- 152: testIssue241 152: 152: *********************************************************** 146: [04:01:55] Rep: 100 Mol:0 145/246 Test #152: testMolAlign ........................... Passed 0.26 sec test 153 Start 153: testO3AAlign 153: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/testO3AAlign 153: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign 153: Test timeout computed to be: 7200 146: [04:01:55] Rep: 100 Mol:4 146: [04:01:55] Rep: 100 Mol:8 146: [04:01:55] Rep: 100 Mol:12 146: [04:01:55] Rep: 100 Mol:16 146: [04:01:55] Rep: 100 Mol:20 146: [04:01:55] Rep: 100 Mol:24 146: [04:01:55] Rep: 100 Mol:28 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: ..[04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 146: [04:01:55] Rep: 100 Mol:1 146: [04:01:55] Rep: 100 Mol:5 146: [04:01:55] Rep: 100 Mol:9 146: [04:01:55] Rep: 100 Mol:13 146: [04:01:55] Rep: 100 Mol:17 146: [04:01:55] Rep: 100 Mol:21 146: [04:01:55] Rep: 100 Mol:25 146: [04:01:55] Rep: 100 Mol:29 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: ..[04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:55] Rep: 60 Mol:2 144: [04:01:55] Rep: 60 Mol:6 144: [04:01:55] Rep: 60 Mol:10 144: [04:01:55] Rep: 60 Mol:14 144: [04:01:55] Rep: 60 Mol:18 144: [04:01:55] Rep: 60 Mol:22 144: [04:01:55] Rep: 60 Mol:26 144: [04:01:55] Rep: 60 Mol:30 151: .[04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:55] Rep: 80 Mol:2 144: [04:01:55] Rep: 80 Mol:6 144: [04:01:55] Rep: 80 Mol:10 144: [04:01:55] Rep: 80 Mol:14 144: [04:01:55] Rep: 80 Mol:18 144: [04:01:55] Rep: 80 Mol:22 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:55] Rep: 80 Mol:26 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:55] Rep: 80 Mol:30 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 146: [04:01:55] Rep: 100 Mol:2 146: [04:01:55] Rep: 100 Mol:6 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 146: [04:01:55] Rep: 100 Mol:10 146: [04:01:55] Rep: 100 Mol:14 146: [04:01:55] Rep: 100 Mol:18 146: [04:01:55] Rep: 100 Mol:22 146: [04:01:55] Rep: 100 Mol:26 146: [04:01:55] Rep: 100 Mol:30 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:55] done 144: [04:01:55] ------------------------------------- 144: [04:01:55] Test MMFF multithreading2 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:55] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 146: [04:01:56] done 146: [04:01:56] ------------------------------------- 146: [04:01:56] Test UFF multithreading2 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 151: .[04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 149: [04:01:53] --------------------------------- 149: [04:01:53] test3 149: 149: [04:01:53] --------------------------------- 149: [04:01:53] test4 149: 149: [04:01:53] --------------------------------- 149: [04:01:53] test5 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] test6 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] test15Dists 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] test Issue 215 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testMultipleConfs 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testMultipleConfsExpTors 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testIssue227 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testIssue236 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testOrdering 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testIssue244 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testIssue251 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testIssue276 149: [04:01:56] --------------------------------- 149: [04:01:56] testIssue284 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testIssue285 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testIssue355 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] testRandomCoords 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] test sf.net issue 1989539 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] test sf.net issue 2091864 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] test constrained embedding 149: 149: [04:01:56] ssd: 0.0752641 149: [04:01:56] ssd: 0.0659363 151: [04:01:56] Molecule does not have explicit Hs. Consider calling AddHs() 150: [04:01:56] UFFTYPER: Warning: hybridization set to SP3 for atom 6 150: [04:01:57] UFFTYPER: Warning: hybridization set to SP3 for atom 6 149: [04:01:56] --------------------------------- 149: [04:01:56] test sf.net issue 2091974 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] test sf.net issue 2835784 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] test sf.net issue 3019283 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] test sf.net issue 3238580 149: 149: [04:01:56] --------------------------------- 149: [04:01:56] test sf.net issue 3483968 149: 149: [04:01:57] --------------------------------- 149: [04:01:57] test github issue 55 149: 149: [04:01:57] --------------------------------- 149: [04:01:57] test1 149: 149: [04:01:57] --------------------------------- 149: [04:01:57] test multi-threading 149: 149: building molecules 150: [04:01:57] UFFTYPER: Warning: hybridization set to SP3 for atom 6 149: generating reference data 150: [04:01:57] UFFTYPER: Warning: hybridization set to SP3 for atom 11 150: [04:01:57] UFFTYPER: Warning: hybridization set to SP3 for atom 11 151: [04:01:57] Molecule does not have explicit Hs. Consider calling AddHs() 150: [04:01:57] UFFTYPER: Warning: hybridization set to SP3 for atom 11 144: [04:01:57] done 144: [04:01:57] ------------------------------------- 144: [04:01:57] Test MMFF multithreading3 151: [04:01:57] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:58] Molecule does not have explicit Hs. Consider calling AddHs() 146: [04:01:58] done 146: [04:01:58] ------------------------------------- 146: [04:01:58] Test UFF multithreading3 151: [04:01:58] Molecule does not have explicit Hs. Consider calling AddHs() 144: [04:01:59] done 144: [04:01:59] ------------------------------------- 144: [04:01:59] Testing github 162: Incorrect SMILES after MMFF parameterization . 144: [04:01:59] done 144: [04:01:59] ------------------------------------- 144: [04:01:59] Testing github 224: crash during MMFF parameterization . 144: [04:01:59] done 144: [04:01:59] ------------------------------------- 144: [04:01:59] Testing github6728: crash due to missing stretch-bend params. 146/246 Test #144: testMMFFForceFieldHelpers .............. Passed 6.03 sec test 154 Start 154: molAlignCatchTest 154: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/molAlignCatchTest 154: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign 154: Test timeout computed to be: 7200 154: Randomness seeded to: 3544367597 154: 42787907 154: 37408532 151: [04:01:59] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:01:59] Molecule does not have explicit Hs. Consider calling AddHs() 149: validating reference data 151: [04:01:59] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:00] Molecule does not have explicit Hs. Consider calling AddHs() 146: [04:02:00] done 146: [04:02:00] ------------------------------------- 146: [04:02:00] Testing GitHubIssue62. 146: [04:02:00] beta-lactam 39.6387 146: [04:02:00] cyclopropanone 174.698 151: [04:02:00] Molecule does not have explicit Hs. Consider calling AddHs() 146: [04:02:00] aziridine 337.986 146: [04:02:00] aziridinone 115.248 146: [04:02:00] isobutene 2.48217 146: [04:02:00] acetone 1.91788 146: [04:02:00] cyclopentanone 10.1648 146: [04:02:00] cyclopropene 99.4921 146: [04:02:00] cyclobutene 41.0156 146: [04:02:00] cyclopropane 267.236 146: [04:02:00] gamma-lactam 15.7471 146: [04:02:00] trans-2,3-diphenylcyclopropan-1-one 203.398 146: [04:02:00] cis-2,3-diphenylcyclopropan-1-one 206.852 146: [04:02:00] 2,3-diphenylcyclopropa-2-en-1-one 20.0443 146: [04:02:00] cyclopropylidencyclobutane 218.879 146: [04:02:00] diphenylmethylidencyclobutane 79.6139 146: [04:02:00] done 146: [04:02:00] ------------------------------------- 146: [04:02:00] Test Github Issue 613: UFF Atom type not properly assigned to lanthanides. 146: [04:02:00] done 146: [04:02:00] ------------------------------------- 146: [04:02:00] Test square planar complexes 146: [04:02:00] done 146: [04:02:00] ------------------------------------- 146: [04:02:00] Test octahedral complexes 146: [04:02:00] done 147/246 Test #146: testUFFForceFieldHelpers ............... Passed 6.93 sec test 155 Start 155: pyMolAlign 155: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolAlign/Wrap/testMolAlign.py" 155: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolAlign/Wrap 155: Test timeout computed to be: 7200 151: [04:02:00] Molecule does not have explicit Hs. Consider calling AddHs() 154: 1376100577 154: 574600736 154: =============================================================================== 154: All tests passed (73 assertions in 3 test cases) 154: 148/246 Test #154: molAlignCatchTest ...................... Passed 2.11 sec test 156 Start 156: testFeatures 156: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/testFeatures 156: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures 156: Test timeout computed to be: 7200 156: [04:02:01] ------------------------------------- 156: [04:02:01] AtomType parser testing. 156: [04:02:01] SMARTS Parse Error: syntax error while parsing: [$([!$([NH0])_100;N,O,$([S])_101,$([N,O)_102])_103] 156: [04:02:01] SMARTS Parse Error: check for mistakes around position 40: 156: [04:02:01] ,O,$([S])_101,$([N,O)_102])_103] 156: [04:02:01] ~~~~~~~~~~~~~~~~~~~~^ 156: [04:02:01] SMARTS Parse Error: Failed parsing SMARTS '[$([!$([NH0])_100;N,O,$([S])_101,$([N,O)_102])_103]' for input: '[$([!$([NH0]);N,O,$([S]),$([N,O)])]' 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] FeatureDefinition parser testing. 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] Test pulling feat defs from a string. 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] FeatureDef functionality testing. 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] FeatureFactory testing. 156: [04:02:01] 1 156: [04:02:01] 2 156: [04:02:01] 3 156: [04:02:01] 4 156: [04:02:01] 5 156: [04:02:01] 6 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] Feature Location testing. 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] Test building a FeatureFactory from a file 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] Testing Issue 224. 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] Testing Issue 225. 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] Test Issue346 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] Test Issue347 156: [04:02:01] done 156: [04:02:01] ------------------------------------- 156: [04:02:01] Testing Issue 348. 156: [04:02:01] SMARTS Parse Error: syntax error while parsing: [C[C] 156: [04:02:01] SMARTS Parse Error: check for mistakes around position 3: 156: [04:02:01] [C[C] 156: [04:02:01] ~~^ 156: [04:02:01] SMARTS Parse Error: Failed parsing SMARTS '[C[C]' for input: '[C[C]' 156: [04:02:01] ------------------------------------- 156: [04:02:01] Testing Nested AtomType definitions. 156: [$([$([$([C;!$(C=[O,N,P,S]);!$(C#N)]),c]);R])] 156: [04:02:01] ------------------------------------- 156: [04:02:01] Testing Github Issue #252: crash when calling getPos() with no conformer. 156: [04:02:01] expect a precondition failure message below 156: [04:02:01] 156: 156: **** 156: Pre-condition Violation 156: molecule has no conformers 156: Violation occurred on line 37 in file ./Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp 156: Failed Expression: dp_mol->getNumConformers() 156: ---------- 156: Stacktrace: 156: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 156: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 156: 2# RDKit::MolChemicalFeature::getPos(int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitMolChemicalFeatures.so.1 156: 3# RDKit::MolChemicalFeature::getPos() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitMolChemicalFeatures.so.1 156: 4# 0x00000001273BDFB8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/testFeatures 156: 5# 0x00000001273B4538 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/testFeatures 156: 6# 0x00007FFF90227224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 156: 7# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 156: ---------- 156: **** 156: 156: [04:02:01] Done 156: [04:02:01] ------------------------------------- 156: [04:02:01] Testing github 2077: add confId argument to MolChemicalFeatureFactor::getFeaturesForMol() 156: [04:02:01] done 149/246 Test #156: testFeatures ........................... Passed 0.04 sec test 157 Start 157: pyChemicalFeatures 157: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py" 157: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap 157: Test timeout computed to be: 7200 153: *********************************************************** 153: Testing O3AAlign 153: --------------------------------- 153: testMMFFO3A 153: 153: --------------------------------- 153: testMMFFO3A with pre-computed dmat and MolHistogram 153: 153: --------------------------------- 153: testMMFFO3A with constraints 153: 153: --------------------------------- 153: testMMFFO3A with variable weight constraints followed by local-only optimization 153: 153: --------------------------------- 153: testCrippenO3A 153: 153: --------------------------------- 153: testCrippenO3A with pre-computed dmat and MolHistogram 153: 153: --------------------------------- 153: testCrippenO3A with constraints 153: 153: --------------------------------- 153: testCrippenO3A with variable weight constraints followed by local-only optimization 153: 153: --------------------------------- 153: testMMFFO3A multithreading 153: 153: generating reference data 151: .[04:02:01] Molecule does not have explicit Hs. Consider calling AddHs() 157: .[04:02:01] Molecule does not have explicit Hs. Consider calling AddHs() 157: .[04:02:01] Molecule does not have explicit Hs. Consider calling AddHs() 149: processing 149: launch :0 149: launch :1 149: launch :2 149: launch :3 157: ..[04:02:01] Molecule does not have explicit Hs. Consider calling AddHs() 157: .[04:02:01] Molecule does not have explicit Hs. Consider calling AddHs() 157: .[04:02:01] SMARTS Parse Error: syntax error while parsing: [N,O;!HQ] 157: [04:02:01] SMARTS Parse Error: check for mistakes around position 8: 157: [04:02:01] [N,O;!HQ] 157: [04:02:01] ~~~~~~~^ 157: [04:02:01] SMARTS Parse Error: Failed parsing SMARTS '[N,O;!HQ]' for input: '[N,O;!HQ]' 157: ... 157: ---------------------------------------------------------------------- 157: Ran 9 tests in 0.131s 157: 157: OK 150/246 Test #157: pyChemicalFeatures ..................... Passed 0.48 sec test 158 Start 158: testShapeHelpers 158: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers/testShapeHelpers 158: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers 158: Test timeout computed to be: 7200 158: *********************************************************** 158: Testing ShapeHelpers 158: --------------------------------- 158: test1Encode 158: 158: --------------------------------- 158: test2Compare 158: 158: --------------------------------- 158: testGithub4364 158: 158: *********************************************************** 151/246 Test #158: testShapeHelpers ....................... Passed 0.04 sec test 159 Start 159: pyShapeHelpers 159: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py" 159: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap 159: Test timeout computed to be: 7200 159: . 159: ---------------------------------------------------------------------- 159: Ran 1 test in 0.083s 159: 159: OK 159: Testing Shape Helpers wrapper 152/246 Test #159: pyShapeHelpers ......................... Passed 0.44 sec test 160 Start 160: testMolCatalog 160: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog/testMolCatalog 160: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog 160: Test timeout computed to be: 7200 153/246 Test #160: testMolCatalog ......................... Passed 0.02 sec test 161 Start 161: pyMolCatalog 161: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolCatalog/Wrap/rough_test.py" 161: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolCatalog/Wrap 161: Test timeout computed to be: 7200 161: . 161: ---------------------------------------------------------------------- 161: Ran 1 test in 0.021s 161: 161: OK 153: processing 153: launch :0 153: launch :1 153: launch :2 153: launch :3 154/246 Test #161: pyMolCatalog ........................... Passed 0.37 sec test 162 Start 162: moldraw2DTest1 162: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/moldraw2DTest1 162: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D 162: Test timeout computed to be: 7200 162: ----------------- Test 1 162: file test1_1.svg gave hash 3840925078U not the expected 1617157703U 162: file test1_2.svg gave hash 4194425583U not the expected 1799670018U 162: file test1_3.svg gave hash 2250867576U not the expected 2382509631U 162: file test1_4.svg gave hash 3594410820U not the expected 4252277495U 162: file test1_5.svg gave hash 1851587463U not the expected 2811480876U 162: file test1_6.svg gave hash 2011746003U not the expected 2635907956U 162: Done 162: ----------------- Test 2 162: file test2_1.png gave hash 3986971853U not the expected 638584804U 162: file test2_2.png gave hash 2592863213U not the expected 610424244U 162: file test2_3.png gave hash 2294574389U not the expected 2179746375U 162: Done 162: ----------------- Test 4 162: file test4_1.png gave hash 3462840168U not the expected 3993974247U 162: file test4_1.svg gave hash 3190217401U not the expected 4157966746U 162: Done 162: ----------------- Test 5 162: file test5_1.png gave hash 1481971426U not the expected 571291290U 162: file test5_1.svg gave hash 1295559538U not the expected 4074479420U 162: file test5_2.png gave hash 408007297U not the expected 97265124U 162: file test5_3.png gave hash 1430199106U not the expected 606188176U 162: Done 162: ----------------- Test 6 (atom labels) 162: file test6_1.svg gave hash 3280384589U not the expected 3623418420U 162: file test6_2.svg gave hash 501263637U not the expected 3885689795U 162: file test6_3.svg gave hash 2009537997U not the expected 2753286335U 162: Done 162: ----------------- Test 7 (backgrounds) 162: file test7_1.svg gave hash 843981570U not the expected 1967202587U 162: file test7_1.png gave hash 2605212490U not the expected 1322246680U 162: file test7_2.svg gave hash 282341648U not the expected 4217504234U 162: file test7_2.png gave hash 2496336878U not the expected 1499012715U 162: Done 162: ----------------- Test8: PrepareMolDrawing 162: Done 162: ----------------- Test multi-threaded drawing 162: reading molecules 162: generating reference drawings 162: processing 162: launch :0 162: launch :1 162: launch :2 162: launch :3 162: Done 162: ----------------- Test Github #781: Rendering single-atom molecules 162: file testGithub781_3.svg gave hash 1424857602U not the expected 1463918610U 162: Done 162: ----------------- Test 3 162: file test3_1.png gave hash 1283919575U not the expected 675908852U 162: file test3_1.svg gave hash 1328776415U not the expected 586189704U 162: file test3_2.png gave hash 4040402152U not the expected 2452584093U 162: file test3_2.svg gave hash 1481229521U not the expected 1700916148U 162: file test3_3.png gave hash 3081615373U not the expected 1907006999U 162: file test3_3.svg gave hash 2929562003U not the expected 1375178959U 162: file test3_4.png gave hash 3529036785U not the expected 2305641511U 162: file test3_4.svg gave hash 587248216U not the expected 187720898U 162: file test3_5.png gave hash 2758251182U not the expected 3842605920U 162: file test3_5.svg gave hash 1096665289U not the expected 300865579U 162: file test3_6.png gave hash 3828082483U not the expected 662622011U 162: file test3_6.svg gave hash 132485380U not the expected 729637096U 162: file test3_7.png gave hash 3664813892U not the expected 469729412U 162: file test3_7.svg gave hash 2714589700U not the expected 2700118064U 162: Done 162: ----------------- Test Github774: upside-down drawings 162: file test774_1.png gave hash 15835157U not the expected 428322245U 162: file test774_1.svg gave hash 493103591U not the expected 1108618931U 162: file test774_2.png gave hash 835177286U not the expected 4095288521U 162: file test774_2.svg gave hash 439562358U not the expected 577567569U 162: Done 162: ----------------- Test 9 (molecule legends) 162: file test9_1.svg gave hash 1315528346U not the expected 1484349178U 162: Done 162: ----------------- Test Github852: Lines used to wedge bonds are too thick 162: file test852_1.png gave hash 4160048374U not the expected 271517011U 162: file test852_1.svg gave hash 508042113U not the expected 2306783336U 162: file test852_2.png gave hash 101373672U not the expected 967452082U 162: file test852_2.svg gave hash 1235654907U not the expected 936665195U 162: ---------------- 162: file test852_2a.svg gave hash 3083849041U not the expected 3499587182U 162: ---------------- 162: file test852_2b.svg gave hash 3189714155U not the expected 2141021605U 162: ---------------- 162: file test852_2c.svg gave hash 1651720250U not the expected 465009830U 162: ---------------- 162: file test852_2d.svg gave hash 3277332536U not the expected 714117851U 162: Done 162: ----------------- Test Github860: Atom symbols in wrong order if bond comes from right 162: file test860_1.png gave hash 1469402068U not the expected 2835587240U 162: file test860_1.svg gave hash 718471937U not the expected 4071399203U 162: file test860_2.png gave hash 3737792988U not the expected 1116015475U 162: file test860_2.svg gave hash 4123557700U not the expected 3926063275U 162: file test860_3.png gave hash 2286418920U not the expected 1872467868U 162: file test860_3.svg gave hash 1139264144U not the expected 2583192182U 162: Done 162: ----------------- Test Github #910: ugly coordinates generated for peptide chains 162: file test910_1.svg gave hash 285277080U not the expected 2101353772U 162: file test910_2.svg gave hash 2184604098U not the expected 3090433026U 162: Done 162: ----------------- Test Github #932: mistake in SVG for wedged bonds 162: Done 162: ----------------- Test Github #953: default color should not be cyan 162: Done 162: ----------------- Test Github #983: wedged bonds between chiral centers drawn improperly 162: file test983_1.svg gave hash 977581182U not the expected 2373378601U 162: file test983_2.svg gave hash 1176297024U not the expected 2571223561U 162: Done 162: ----------------- Test Deuterium, Tritium 162: Done 162: ----------------- Test crossed bonds 162: file crossed_bonds.svg gave hash 2357548724U not the expected 3239666213U 162: Done 162: ----------------- Testing drawing a second molecule 162: file test10_1.svg gave hash 3149901024U not the expected 502155973U 162: file test10_2.svg gave hash 762048470U not the expected 3289667916U 162: file test10_3.svg gave hash 2365222328U not the expected 2681596657U 162: file test10_4.svg gave hash 1082559408U not the expected 2620790292U 162: file test10_5.svg gave hash 955314118U not the expected 2715569518U 162: file test10_6.svg gave hash 3863669925U not the expected 2984792612U 162: Done 162: ----------------- Testing drawing a grid of molecules 162: file test11_1.svg gave hash 2252080194U not the expected 568621130U 162: file test11_2.svg gave hash 736149105U not the expected 1278518938U 162: Done 162: ----------------- Testing drawMolecules 162: file test12_1.svg gave hash 4164245664U not the expected 826649652U 162: file test12_5.svg gave hash 276992328U not the expected 3309074342U 162: file test12_3.svg gave hash 4115567988U not the expected 3930752601U 162: file test12_4.svg gave hash 4115567988U not the expected 3930752601U 162: file test12_2.svg gave hash 1965660361U not the expected 3096703157U 162: Done 162: ----------------- Test JSON Configuration 162: file test13_1.svg gave hash 3950170009U not the expected 3606927863U 162: Done 162: ----------------- Testing github 1090: escape html characters in SVG output 162: Done 162: ----------------- Testing github 1035: overflow bug in SVG color generation 162: Done 162: ----------------- Testing github 1271: MolDraw2D not drawing anything for molecules aligned with the X or Y axes 162: file test1271_5.svg gave hash 30235138U not the expected 1050442325U 162: Done 162: ----------------- Testing github 1322: add custom atom labels 162: file test1322_1.svg gave hash 1987069228U not the expected 843693353U 162: file test1322_2.svg gave hash 2060269415U not the expected 2204609576U 162: Done 162: ----------------- Testing use of a black & white palette 162: file test14_1.svg gave hash 2593240709U not the expected 3999745197U 162: file test14_2.svg gave hash 1180313442U not the expected 1367250174U 162: Done 162: ----------------- Testing use of continuous highlighting with drawMolecules 162: file test15_1.svg gave hash 2305259583U not the expected 2704862730U 162: file test15_2.svg gave hash 2442984749U not the expected 659023204U 162: Done 162: ----------------- Test 17 - Testing maximum font size 162: file test17_1.svg gave hash 2260184712U not the expected 75329691U 162: file test17_2.svg gave hash 659077001U not the expected 2699803606U 162: file test17_3.svg gave hash 1926066932U not the expected 2996396838U 162: file test17_4.svg gave hash 4133942323U not the expected 2390212603U 162: Done 162: ----------------- Testing github 1829: crash when drawMolecules() is called with an empty list 162: Done 162: ----------------- Testing use of fixed scales for drawing. 162: file test18_1.svg gave hash 3803337242U not the expected 1704156856U 162: file test18_2.svg gave hash 1162085066U not the expected 597526679U 162: file test18_3.svg gave hash 611461919U not the expected 3425044116U 162: file test18_4.svg gave hash 1663260716U not the expected 1519252882U 162: file test18_5.svg gave hash 806463379U not the expected 486224214U 162: file test18_6.svg gave hash 2349283164U not the expected 3016814772U 162: file test18_7.svg gave hash 4093037200U not the expected 926168958U 162: Done 162: ----------------- Testing rotation of 2D drawing. 162: file test19_1.svg gave hash 407580005U not the expected 4060393720U 162: file test19_2.svg gave hash 2240088107U not the expected 4171949096U 162: Done 162: ----------------- Testing inclusion of molecule metadata 162: file test16_1.svg gave hash 4200111826U not the expected 62134348U 162: file test16_2.svg gave hash 2122610691U not the expected 3050459518U 162: Done 162: ----------------- Testing Github2063: Drawing racemic bond stereo as crossed bonds should be the default 162: file testGithub2063_1.svg gave hash 992781977U not the expected 1908318348U 162: file testGithub2063_2.svg gave hash 992781977U not the expected 1908318348U 162: Done 162: ----------------- Testing Github2151: MolDraw2D: line width should be controlled by MolDrawOptions 162: file testGithub2151_1.svg gave hash 2395078931U not the expected 4119581143U 162: file testGithub2151_2.svg gave hash 1129101623U not the expected 425960913U 162: Done 162: ----------------- Testing testGithub2762: MolDraw2D: HCl and ethane should be drawn 162: Done 162: ----------------- Testing testGithub2931: multi-coloured molecule highlights. 162: file testGithub2931_1.svg gave hash 3546086819U not the expected 3635831631U 162: file testGithub2931_2.svg gave hash 1878682670U not the expected 2281185190U 162: file testGithub2931_3.svg gave hash 3365274231U not the expected 2885834646U 162: file testGithub2931_4.svg gave hash 2300990986U not the expected 709559976U 162: Done 162: ----------------- Testing annotation of 2D Drawing. 162: file test20_1.png gave hash 1938743260U not the expected 200877868U 162: file test20_1.svg gave hash 2129450275U not the expected 4276517022U 162: file test20_2.png gave hash 4083668985U not the expected 1651164846U 162: file test20_2.svg gave hash 2507367286U not the expected 2037634551U 162: file test20_3.png gave hash 1520659280U not the expected 1463603076U 162: file test20_3.svg gave hash 2727796707U not the expected 2689385188U 162: file test20_4.png gave hash 3326508190U not the expected 1714613205U 162: file test20_4.svg gave hash 3418327955U not the expected 4113839132U 162: Done 162: ----------------- Test 21 - different font 162: file test21_1.svg gave hash 2878173336U not the expected 390968884U 162: [04:02:20] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/No_Such_Font_File.ttf not found. 162: [04:02:20] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 162: file test21_2.svg gave hash 216260646U not the expected 3050176664U 162: Done 162: ----------------- Test 22 - draw explicit methyls. 162: file test22_1.svg gave hash 3426768357U not the expected 3688394300U 162: file test22_2.svg gave hash 1936546203U not the expected 1963311622U 162: Done 162: ----------------- Testing drawing of legends. 162: file testGithub3112_1.svg gave hash 3309789269U not the expected 75452578U 162: file testGithub3112_2.svg gave hash 1712616944U not the expected 2379426157U 162: file testGithub3112_3.svg gave hash 1478581410U not the expected 102822156U 162: file testGithub3112_4.svg gave hash 3119679941U not the expected 497518508U 162: Done 162: ----------------- Test Github 3305 - change and scale line widths. 162: file testGithub3305_1.svg gave hash 3426768357U not the expected 3688394300U 162: file testGithub3305_2.svg gave hash 193465986U not the expected 3172298658U 162: file testGithub3305_3.svg gave hash 3399005512U not the expected 30441258U 162: file testGithub3305_1.png gave hash 1516908793U not the expected 3303791649U 162: file testGithub3305_2.png gave hash 4238325905U not the expected 4003267433U 162: file testGithub3305_3.png gave hash 1266082498U not the expected 273338209U 162: file testGithub3305_4.png gave hash 2758251182U not the expected 3842605920U 162: file testGithub3305_4.svg gave hash 1096665289U not the expected 300865579U 162: file testGithub3305_5.png gave hash 284833991U not the expected 151279576U 162: file testGithub3305_5.svg gave hash 2864659968U not the expected 1335449325U 162: file testGithub3305_6.png gave hash 906926625U not the expected 613418460U 162: file testGithub3305_6.svg gave hash 2849474065U not the expected 4242832627U 162: file testGithub3305_7.png gave hash 3156471943U not the expected 2835747678U 162: file testGithub3305_7.svg gave hash 4251853036U not the expected 1080046861U 162: Done 162: ----------------- Test Github 3391 - maxFontSize interacting badly with DrawMolecules. 162: file testGithub3391_2.svg gave hash 1318798309U not the expected 1941002529U 162: file testGithub3391_3.svg gave hash 783539193U not the expected 2929587661U 162: file testGithub3391_4.svg gave hash 86190467U not the expected 3877564580U 162: Done 162: ----------------- Test Github 4156 - bad scale for radicals in grid 162: file testGithub4156_1.svg gave hash 19990580U not the expected 3897707793U 162: file testGithub4156_2.svg gave hash 2685997745U not the expected 2067399849U 162: Done 162: ----------------- Test JSON atomColourPalette 162: file test23_1.svg gave hash 724753536U not the expected 244577595U 162: Done 162: ----------------- Test draw aromatic OR queries 162: Done 162: ----------------- Test AND queries 162: Done 155/246 Test #162: moldraw2DTest1 ......................... Passed 18.32 sec test 163 Start 163: moldraw2DTestCatch 163: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/moldraw2DTestCatch 163: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D 163: Test timeout computed to be: 7200 163: Randomness seeded to: 4051015414 163: file testAtomTags_1.svg gave hash 3542197767U not the expected 3187798125U 163: file testAtomTags_2.svg gave hash 1648758889U not the expected 822910240U 163: file testAtomTags_3.svg gave hash 410848479U not the expected 2244078420U 163: file contourMol_1.svg gave hash 1749387692U not the expected 3634867913U 163: file contourMol_2.svg gave hash 3371803390U not the expected 1815941817U 163: file contourMol_3.svg gave hash 3458913990U not the expected 2579392727U 163: file contourMol_4.svg gave hash 3208914131U not the expected 2914799663U 163: file contourMol_5.svg gave hash 2595550724U not the expected 3792684719U 155: .............[04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 163: file contourMol_6.svg gave hash 1450249302U not the expected 1743220181U 163: file contourMol_7.svg gave hash 4053301088U not the expected 2221193310U 163: file testFoundations_1.svg gave hash 2283802316U not the expected 2350247048U 163: file testFoundations_2.svg gave hash 2468031318U not the expected 15997352U 163: file testTest_1.svg gave hash 2468031318U not the expected 15997352U 163: file testKekulizationProblems_1.svg gave hash 3327452096U not the expected 2284161107U 163: file testAtomBondIndices_1.svg gave hash 616201599U not the expected 2702803018U 163: file testAtomBondIndices_2.svg gave hash 1572186777U not the expected 1564350363U 163: file testAtomBondIndices_3.svg gave hash 2607897548U not the expected 1346662812U 163: file testAtomBondIndices_4.svg gave hash 1781316380U not the expected 662361891U 163: file testAtomBondIndices_5.svg gave hash 793323137U not the expected 1502163147U 163: file testAtomBondIndices_6.svg gave hash 698046127U not the expected 1659568104U 155: [04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 163: file testGithub3226_1.svg gave hash 22593684U not the expected 831257877U 155: [04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 163: file testGithub3226_1.png gave hash 2812555500U not the expected 3165135374U 155: [04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 163: file testGithub3226_2.svg gave hash 4138091576U not the expected 3517325227U 163: file testGithub3226_2.png gave hash 1283329694U not the expected 643975155U 155: [04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 163: file testGithub3226_3.svg gave hash 3404095735U not the expected 3609721552U 155: [04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 163: file testGithub3226_3.png gave hash 2323908705U not the expected 3119571946U 163: file testPNGMetadata_1.png gave hash 2509107217U not the expected 997629701U 155: [04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 155: [04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 155: [04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 163: file testPNGMetadata_2.png gave hash 748024399U not the expected 1797853056U 155: [04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 155: [04:02:21] Molecule does not have explicit Hs. Consider calling AddHs() 163: file testGithub3369_1.svg gave hash 3375138088U not the expected 1227653771U 163: file testIncludeRadicals_1a.svg gave hash 1368422441U not the expected 1829641340U 163: file testLegendsAndDrawing-1.svg gave hash 1557849637U not the expected 3563802758U 163: file testGithub3577-1.svg gave hash 3105871660U not the expected 763116213U 163: [04:02:22] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/ComicNeue-Regular.ttf not found. 163: [04:02:22] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 163: file testHandDrawn-1.svg gave hash 4223601249U not the expected 2253418236U 163: [04:02:22] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/ComicNeue-Regular.ttf not found. 163: [04:02:22] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 163: file testHandDrawn-1.png gave hash 1458570240U not the expected 3894611804U 163: [04:02:22] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/ComicNeue-Regular.ttf not found. 163: [04:02:22] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 163: file testHandDrawn-2.svg gave hash 3213069550U not the expected 794717511U 163: [04:02:22] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/ComicNeue-Regular.ttf not found. 163: [04:02:22] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 163: file testHandDrawn-2.png gave hash 1717036333U not the expected 1443443188U 163: [04:02:22] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/ComicNeue-Regular.ttf not found. 163: [04:02:22] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 163: file testHandDrawn-3.svg gave hash 2935473441U not the expected 3982694296U 163: [04:02:22] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/ComicNeue-Regular.ttf not found. 163: [04:02:22] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 163: file testHandDrawn-3.png gave hash 2780147607U not the expected 865629432U 163: [04:02:22] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/ComicNeue-Regular.ttf not found. 163: [04:02:22] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 163: file testHandDrawn-4.svg gave hash 1833763060U not the expected 2146113517U 163: [04:02:22] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/ComicNeue-Regular.ttf not found. 163: [04:02:22] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 163: file testHandDrawn-4.png gave hash 2253573871U not the expected 3919767093U 163: file testHandDrawn-5a.svg gave hash 2890613829U not the expected 1567781555U 163: [04:02:23] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/ComicNeue-Regular.ttf not found. 163: [04:02:23] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 163: file testHandDrawn-5b.svg gave hash 3326712238U not the expected 66354106U 163: [04:02:23] Font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/ComicNeue-Regular.ttf not found. 163: [04:02:23] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 163: file testHandDrawn-5.png gave hash 2147273812U not the expected 828378555U 163: file testBrackets-1a.svg gave hash 64586795U not the expected 4189399574U 163: file testBrackets-1b.svg gave hash 219987106U not the expected 3773894816U 163: file testBrackets-1c.svg gave hash 64586795U not the expected 4189399574U 163: file testBrackets-1d.svg gave hash 219987106U not the expected 3773894816U 163: file testBrackets-1e.svg gave hash 3788532828U not the expected 2492125470U 163: file testBrackets-2a.svg gave hash 574382548U not the expected 1050851904U 163: file testBrackets-2b.svg gave hash 1148554894U not the expected 776446765U 163: file testBrackets-2c.svg gave hash 574382548U not the expected 1050851904U 163: file testBrackets-2d.svg gave hash 1148554894U not the expected 776446765U 163: file testBrackets-3a.svg gave hash 55347162U not the expected 3096284602U 163: file testBrackets-4a.svg gave hash 4109127586U not the expected 3837821771U 163: file testBrackets-4b.svg gave hash 3897543317U not the expected 1477006167U 163: file testBrackets-5a.svg gave hash 1236934849U not the expected 1447240271U 163: file testBrackets-5768.svg gave hash 2223513506U not the expected 2559120196U 163: file testSGroupData-1a.svg gave hash 2340055151U not the expected 426096222U 163: file testSGroupData-1b.svg gave hash 2886132663U not the expected 1688385103U 163: file testSGroupData-3a.svg gave hash 713845791U not the expected 62481132U 163: file testSGroupData-2a.svg gave hash 1798361530U not the expected 195363059U 163: file testSGroupData-2b.svg gave hash 1739798573U not the expected 942041938U 163: file testSGroupData-3a.svg gave hash 713845791U not the expected 62481132U 163: file testPositionVariation-1.svg gave hash 1250593729U not the expected 1347003808U 163: file testPositionVariation-1b.svg gave hash 2900880626U not the expected 3269244452U 163: file testPositionVariation-2.svg gave hash 2404588724U not the expected 473948585U 163: file testPositionVariation-3.svg gave hash 1954108374U not the expected 4039188982U 163: file testPositionVariation-4.svg gave hash 1793821079U not the expected 3407574474U 163: file testNoAtomLabels-1.svg gave hash 574617410U not the expected 4255907058U 163: file testNoAtomLabels-2.svg gave hash 3194451719U not the expected 3643749531U 163: file testQueryBonds-1a.svg gave hash 4014427809U not the expected 1525751327U 163: file testQueryBonds-1b.svg gave hash 2936984779U not the expected 2239724223U 163: file testQueryBonds-1c.svg gave hash 3871378016U not the expected 2434786487U 163: file testQueryBonds-2.svg gave hash 2707675342U not the expected 3399320861U 163: file testLinkNodes-2-0.svg gave hash 4034645063U not the expected 145749789U 163: file testLinkNodes-2-30.svg gave hash 672481277U not the expected 3203923109U 163: file testLinkNodes-2-60.svg gave hash 705226084U not the expected 2004079267U 163: file testLinkNodes-2-90.svg gave hash 3571272174U not the expected 171994932U 163: file testLinkNodes-2-120.svg gave hash 230633195U not the expected 673333745U 163: file testLinkNodes-2-150.svg gave hash 1751250656U not the expected 51965551U 163: file testLinkNodes-2-180.svg gave hash 1099619505U not the expected 433020402U 163: file testMolAnnotations-1.svg gave hash 4186871544U not the expected 1638024035U 163: file testMolAnnotations-2a.svg gave hash 993933032U not the expected 3029896996U 163: file testMolAnnotations-2b.svg gave hash 764542382U not the expected 3110016833U 163: file testMolAnnotations-2c.svg gave hash 3637581889U not the expected 611992302U 163: file testMolAnnotations-3a.svg gave hash 2967880938U not the expected 55379064U 163: file testMolAnnotations-3b.svg gave hash 2827440022U not the expected 936144383U 163: file testMolAnnotations-3c.svg gave hash 3940820727U not the expected 3983292921U 163: file testMolAnnotations-3d.svg gave hash 2455786422U not the expected 748075045U 163: file testMolAnnotations-4a.svg gave hash 684780546U not the expected 3474490519U 163: file testLinkNodes-1-0.svg gave hash 1742740041U not the expected 3845035394U 163: file testLinkNodes-1-30.svg gave hash 290570218U not the expected 3207457801U 163: file testLinkNodes-1-60.svg gave hash 293757258U not the expected 2620138210U 163: file testLinkNodes-1-90.svg gave hash 2184207504U not the expected 1457485851U 163: file testLinkNodes-1-120.svg gave hash 1777381842U not the expected 4267267665U 163: file testLinkNodes-1-150.svg gave hash 3520382532U not the expected 574622776U 163: file testLinkNodes-1-180.svg gave hash 638488040U not the expected 2541146503U 163: file testGithub3744.svg gave hash 1280540500U not the expected 387800653U 163: file testAtomLists-1.svg gave hash 1504296447U not the expected 1887579391U 163: file testAtomLists-2.svg gave hash 3251029350U not the expected 555139782U 163: file testIsoDummyIso.svg gave hash 3319443622U not the expected 2405371137U 163: file testNoIsoDummyIso.svg gave hash 1461272805U not the expected 748558214U 163: file testIsoNoDummyIso.svg gave hash 2432588025U not the expected 3054263824U 163: file testNoIsoNoDummyIso.svg gave hash 247862132U not the expected 1185561148U 163: file testHydrogenBonds1.svg gave hash 2225826152U not the expected 2605974904U 163: [04:02:23] unrecognized bond typefile testHydrogenBonds2.svg gave hash 4149192934U not the expected 645414593U 163: file testGithub2976.svg gave hash 827785853U not the expected 4194649417U 163: file testReactionCoords.svg gave hash 3403716630U not the expected 798999015U 163: file testAnnotationColors.svg gave hash 2161803217U not the expected 3297011749U 163: file testGithub4238_1.svg gave hash 3856931975U not the expected 842841477U 163: file testGithub4238_1.png gave hash 1612259880U not the expected 2623427676U 163: file testGithub4323_1.svg gave hash 3737732114U not the expected 2536621192U 163: file testGithub4323_2.svg gave hash 2985792549U not the expected 2120846759U 163: file testGithub4323_3.svg gave hash 1806358430U not the expected 4156867630U 163: file testGithub4323_4.svg gave hash 3413065852U not the expected 3824125601U 163: file testGithub4323_1.png gave hash 106384585U not the expected 3075787867U 163: file testGithub4323_3.png gave hash 337842488U not the expected 381907253U 163: file testGithub4508_1.svg gave hash 711057613U not the expected 2047652713U 163: [04:02:24] FIELDDISP info not found for DAT SGroup which isn't associated with an atom. SGroup will not be rendered. 163: file testGithub4508_1b.svg gave hash 3491849265U not the expected 2681019776U 163: file testGithub4508_2.svg gave hash 1811468860U not the expected 1382076550U 163: file testGithub4508_2b.svg gave hash 964213742U not the expected 4005636724U 163: file testGithub4538.svg gave hash 2600997525U not the expected 2550818801U 163: file testDarkMode.1.svg gave hash 1154231353U not the expected 4157562958U 163: file testMonochrome.1.svg gave hash 4022443314U not the expected 482290994U 163: file testMonochrome.2.svg gave hash 3148679451U not the expected 2128285153U 163: file testAvalon.1.svg gave hash 2803567763U not the expected 477303888U 163: file testCDK.1.svg gave hash 882351452U not the expected 1764612361U 163: file testGithub4519_1.svg gave hash 2664633857U not the expected 736612670U 163: file testGithub4519_2.svg gave hash 1584629953U not the expected 171503813U 163: file testGithub4519_3.svg gave hash 848820494U not the expected 3396792960U 163: file testGithub4519_4.svg gave hash 1522152095U not the expected 3875957215U 163: file testBaseFontSize.1a.svg gave hash 3665607409U not the expected 1295117205U 163: file testBaseFontSize.1b.svg gave hash 1542403068U not the expected 3595811515U 163: file testBaseFontSize.2a.svg gave hash 1704350166U not the expected 2958687877U 163: file testBaseFontSize.2b.svg gave hash 3344593609U not the expected 1786972332U 163: file testFlexiCanvas.1a.svg gave hash 2376791495U not the expected 2633733362U 163: file testFlexiCanvas.1b.svg gave hash 2472371250U not the expected 1541095928U 163: file testFlexiCanvas.1c.svg gave hash 2797251846U not the expected 3204351481U 163: file testFlexiCanvas.1d.svg gave hash 3190671363U not the expected 1753089731U 163: file testFlexiCanvas.2.svg gave hash 269007759U not the expected 665664909U 163: file testFlexiCanvas.2a.png gave hash 816512823U not the expected 2609920321U 163: file testFlexiCanvas.2b.png gave hash 2120145716U not the expected 3615599154U 163: file testSemiFlexiCanvas.1a.svg gave hash 2472371250U not the expected 1541095928U 163: file testSemiFlexiCanvas.1b.svg gave hash 2474894189U not the expected 3020732451U 163: file testFlexiCanvas.3.svg gave hash 1836444545U not the expected 3544316588U 163: file testFlexiCanvas.4a.svg gave hash 2890365484U not the expected 1486952473U 163: file testFlexiCanvas.4b.svg gave hash 1548512529U not the expected 1957607740U 163: file testFlexiCanvas.4c.svg gave hash 3188013578U not the expected 3955371857U 163: file testFlexiCanvas.4d.svg gave hash 752620351U not the expected 1137945621U 163: file testFlexiCanvas.5a.svg gave hash 2640129938U not the expected 3968863584U 163: file testFlexiCanvas.5b.svg gave hash 2785796829U not the expected 649567318U 163: file testFlexiCanvas.5c.svg gave hash 1946333790U not the expected 1826396133U 163: file testFlexiCanvas.5d.svg gave hash 1052911796U not the expected 1730603480U 163: file testFlexiCanvas.6a.svg gave hash 2747664988U not the expected 3085867303U 163: file testFlexiCanvas.6b.svg gave hash 106899373U not the expected 2819164642U 163: file testFlexiCanvas.6c.svg gave hash 2747664988U not the expected 3085867303U 163: file testFlexiCanvas.6d.svg gave hash 2747664988U not the expected 3085867303U 163: file testFlexiCanvas.7a.svg gave hash 3558005743U not the expected 514767495U 163: file testFlexiCanvas.7b.svg gave hash 4108886415U not the expected 4275125955U 163: file testFlexiCanvas.7c.svg gave hash 3558005743U not the expected 514767495U 163: file testFlexiCanvas.7d.svg gave hash 3558005743U not the expected 514767495U 163: file testGithub4764.sz1.svg gave hash 3960519436U not the expected 3611125861U 163: file testGithub4764.sz2.svg gave hash 1248344525U not the expected 1936114454U 163: file testGithub4764.sz3.svg gave hash 216601514U not the expected 2712214121U 163: file testGithub4764.sz1.png gave hash 60244413U not the expected 2179222277U 163: file testGithub4764.sz2.png gave hash 811878551U not the expected 444262090U 163: file testGithub4764.sz3.png gave hash 3943283520U not the expected 3567162200U 163: file testDrawArc1.svg gave hash 2570257638U not the expected 3279637525U 163: file testMetalWedges.svg gave hash 1866142125U not the expected 2896721486U 163: file testVariableLegend_1.svg gave hash 1208675629U not the expected 1817838365U 163: file testVariableLegend_2.svg gave hash 799897710U not the expected 1038247753U 163: file testVariableLegend_3.svg gave hash 2599269417U not the expected 2073034956U 163: file testGithub_5061.svg gave hash 1693817644U not the expected 2050932431U 163: file testGithub_5269_1.svg gave hash 1215253662U not the expected 4160868253U 163: file testGithub_5269_2.svg gave hash 3106933409U not the expected 488926221U 163: file test_classes_wavy_bonds.svg gave hash 717756861U not the expected 1694809514U 163: file github5383_1.svg gave hash 3371803390U not the expected 1815941817U 163: file github5383_2.svg gave hash 1193694137U not the expected 0U 163: file github5383_1.png gave hash 2596689108U not the expected 2893520928U 163: file github5156_1.svg gave hash 369772438U not the expected 2145907703U 163: file github5156_2.svg gave hash 3891486909U not the expected 4184795863U 163: file acs1996_1.svg gave hash 216498414U not the expected 1111630317U 163: file acs1996_1.png gave hash 3846637818U not the expected 2329725800U 163: file acs1996_2.svg gave hash 3690302210U not the expected 908745273U 163: file acs1996_2.png gave hash 636902962U not the expected 2996350718U 163: file acs1996_3.svg gave hash 2134212631U not the expected 879041204U 163: file acs1996_4.svg gave hash 1360276338U not the expected 1550424006U 163: file acs1996_5.svg gave hash 2027066644U not the expected 3624853279U 163: file acs1996_6.svg gave hash 2198014585U not the expected 3810124161U 163: file acs1996_7.svg gave hash 141629659U not the expected 1113821459U 163: file acs1996_8.svg gave hash 2798315780U not the expected 4110469272U 163: file acs1996_9.svg gave hash 638739745U not the expected 231896677U 163: file acs1996_10.svg gave hash 1008047306U not the expected 2229333301U 163: file acs1996_11.svg gave hash 2107122283U not the expected 4107969968U 163: [04:02:25] ACS drawing mode works best with a flexiCanvas i.e. a drawer created with width and height of -1. The scale will be fixed, and that may not look great with a pre-determined size. 163: file acs1996_12.svg gave hash 1695632460U not the expected 2930884583U 163: file test_unspec_stereo.svg gave hash 738766093U not the expected 3923423666U 163: file light_blue_h_no_label_1.svg gave hash 4062235881U not the expected 1615074554U 163: file bond_highlights_1.svg gave hash 658102882U not the expected 3461339568U 163: file bond_highlights_2.svg gave hash 3764645182U not the expected 4196744632U 163: file bond_highlights_3.svg gave hash 3867013292U not the expected 1492806612U 163: file bond_highlights_4.svg gave hash 3867013292U not the expected 1492806612U 163: file bond_highlights_5.svg gave hash 3468095694U not the expected 1018090699U 163: file bond_highlights_6.svg gave hash 2798034336U not the expected 2808634572U 163: file bond_highlights_7.svg gave hash 2718345351U not the expected 2160801877U 163: file bond_highlights_8.svg gave hash 583556865U not the expected 3119784980U 163: file bond_highlights_9.svg gave hash 3952673208U not the expected 3999278931U 163: file testGithub5486_1.svg gave hash 1690505493U not the expected 3146085634U 163: file testGithub5511_1.svg gave hash 3804872941U not the expected 3975118836U 163: file testGithub5511_2.svg gave hash 1462033913U not the expected 1730094503U 163: file test_github_5534.svg gave hash 2321188208U not the expected 4139208597U 163: file test_github5704_1.svg gave hash 2750231117U not the expected 1676917819U 163: file test_github5704_2.svg gave hash 2842843814U not the expected 2959183882U 163: file test_github5704_3.svg gave hash 3877554301U not the expected 1303839406U 163: file test_github5704_4.svg gave hash 1994163028U not the expected 578468407U 163: file test_github5767.svg gave hash 3276045309U not the expected 3943519724U 163: file test_github5947.svg gave hash 2759717842U not the expected 3122633523U 163: file test_github5943.svg gave hash 2101435859U not the expected 1113511714U 163: file test_github5949.svg gave hash 3224019254U not the expected 420848566U 163: file test_github5974.svg gave hash 1343954295U not the expected 1522014196U 163: file test_github5963.svg gave hash 3298068568U not the expected 941197725U 163: file test_github6025.svg gave hash 4133517553U not the expected 2316385019U 163: file test_github6027_1.svg gave hash 3135827679U not the expected 1504848694U 163: file test_github6027_2.svg gave hash 3945179782U not the expected 765638922U 163: file test_github6041b.svg gave hash 491337038U not the expected 444537337U 163: file test_complex_query_atoms_1.svg gave hash 1858963124U not the expected 1058348348U 163: file test_complex_query_atoms_2.svg gave hash 1035480271U not the expected 3820627663U 163: file test_complex_query_atoms_3.svg gave hash 1686043631U not the expected 2574610745U 163: file test_complex_query_atoms_4.svg gave hash 1686043631U not the expected 2574610745U 163: file test_complex_query_atoms_5.svg gave hash 2203803203U not the expected 2239402605U 163: file test_complex_query_atoms_6.svg gave hash 3698041037U not the expected 2784917732U 163: file test_complex_query_atoms_7.svg gave hash 1245832599U not the expected 4016570948U 163: file test_complex_query_atoms_8.svg gave hash 1294989648U not the expected 1215989604U 163: file test_complex_query_atoms_9.svg gave hash 1115198970U not the expected 774489308U 163: file test_complex_query_atoms_10.svg gave hash 2517251618U not the expected 1888858967U 163: file test_complex_query_atoms_11.svg gave hash 3242318807U not the expected 2202417832U 163: file test_complex_query_atoms_12.svg gave hash 1172019267U not the expected 4094464645U 163: file test_complex_query_atoms_13.svg gave hash 1243902839U not the expected 2082462146U 163: file test_complex_query_atoms_14.svg gave hash 144421840U not the expected 3306293765U 163: file test_complex_query_atoms_15.svg gave hash 350162044U not the expected 422354297U 163: file test_complex_query_atoms_16.svg gave hash 2056433870U not the expected 1559600050U 163: file test_github6112.svg gave hash 786537593U not the expected 3278777629U 163: file test_github6160_1.svg gave hash 2373441701U not the expected 1248002094U 163: file test_github6160_2.svg gave hash 780313662U not the expected 3845316354U 163: file test_github6160_3.svg gave hash 2495826902U not the expected 332436229U 163: file test_getMolSize.svg gave hash 738629656U not the expected 894431558U 163: file test_github6200_1.svg gave hash 3652083807U not the expected 1975293465U 163: file test_github6200_2.svg gave hash 1251662961U not the expected 2658818798U 163: file test_queryColour_1.svg gave hash 612698405U not the expected 778322651U 163: file test_queryColour_2.svg gave hash 4016400312U not the expected 45913095U 163: file github6336_1.png gave hash 656214421U not the expected 2958833204U 155: ...[04:02:25] Molecule does not have explicit Hs. Consider calling AddHs() 163: file github6336_1.svg gave hash 1390783959U not the expected 612606818U 163: file github6416.svg gave hash 204958662U not the expected 3814405016U 155: [04:02:25] Molecule does not have explicit Hs. Consider calling AddHs() 163: file test_github6397_1.svg gave hash 641826916U not the expected 4203615821U 155: [04:02:25] Molecule does not have explicit Hs. Consider calling AddHs() 155: [04:02:25] Molecule does not have explicit Hs. Consider calling AddHs() 155: [04:02:25] Molecule does not have explicit Hs. Consider calling AddHs() 163: file test_github6397_2.svg gave hash 3671116844U not the expected 2405824082U 163: file test_github6397_3.svg gave hash 4272638606U not the expected 759740391U 163: file test_github6397_4.svg gave hash 1388380802U not the expected 3123896712U 163: file test_github6397_5.svg gave hash 3466872743U not the expected 148587580U 163: file test_github6400_1.svg gave hash 3669796685U not the expected 2792561051U 163: file github6504_1.svg gave hash 3899211832U not the expected 3649936662U 163: file github6504_2.svg gave hash 3024468659U not the expected 106020287U 163: file github6569_1.svg gave hash 1904338201U not the expected 1698514747U 163: file github6569_2.svg gave hash 3753962909U not the expected 3269796969U 163: file lasso_highlights_1.svg gave hash 2758820347U not the expected 3709434534U 163: file lasso_highlights_2.svg gave hash 3793930795U not the expected 757121560U 155: ... 155: ---------------------------------------------------------------------- 155: Ran 19 tests in 25.346s 155: 155: OK 155: Testing MolAlign Wrappers 163: file lasso_highlights_3.svg gave hash 909338570U not the expected 556406365U 163: file lasso_highlights_4.svg gave hash 1169229929U not the expected 4148844874U 163: file lasso_highlights_5.svg gave hash 595568267U not the expected 3920196793U 163: file lasso_highlights_6.svg gave hash 4057458673U not the expected 2113147733U 163: file lasso_highlights_7.svg gave hash 1759335409U not the expected 514868036U 156/246 Test #155: pyMolAlign ............................. Passed 25.72 sec test 164 Start 164: moldraw2DRxnTest1 164: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/moldraw2DRxnTest1 164: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D 164: Test timeout computed to be: 7200 163: file lasso_highlights_8.svg gave hash 2072576322U not the expected 3231367552U 163: file testGithub6685_1.svg gave hash 2360028336U not the expected 1012747673U 163: file testGithub6685_2.svg gave hash 1967489890U not the expected 4003431099U 163: file testGithub6685_3.svg gave hash 2315324286U not the expected 3019254647U 164: ----------------- Test 1 163: file testGithub6685_4.svg gave hash 1348301909U not the expected 1239628830U 164: file rxn_test1_1.png gave hash 4020643666U not the expected 801892091U 163: file bad_lasso_1.svg gave hash 2208691179U not the expected 726527516U 163: file AtropCanon1.svg gave hash 1130558009U not the expected 1371378369U 164: file rxn_test1_1.svg gave hash 2895800765U not the expected 4280849065U 163: file AtropManyChiralsEnhanced.svg gave hash 2779455770U not the expected 2256768013U 164: file rxn_test1_2.png gave hash 1404595713U not the expected 507435337U 163: file testGithub6968.svg gave hash 2416693956U not the expected 577496246U 164: file rxn_test1_2.svg gave hash 2007816931U not the expected 2640646320U 164: file rxn_test1_3.png gave hash 482053907U not the expected 1590809137U 164: file rxn_test1_3.svg gave hash 2341270304U not the expected 2781928588U 164: file rxn_test1_4.png gave hash 2222627099U not the expected 1766700542U 164: file rxn_test1_4.svg gave hash 1951052784U not the expected 437863065U 164: file rxn_test1_5.png gave hash 1839474947U not the expected 2552100594U 164: file rxn_test1_5.svg gave hash 2952130468U not the expected 3590497359U 163: file testGithub7036_2.svg gave hash 2093741698U not the expected 2411796331U 163: file testGithub7036_1.svg gave hash 1700645568U not the expected 303621762U 164: file rxn_test1_6.png gave hash 770525514U not the expected 3791582903U 164: file rxn_test1_6.svg gave hash 1245887687U not the expected 3289415410U 163: file testWedgeNonSingleBonds-1.svg gave hash 1476167396U not the expected 2116685919U 163: file testWedgeNonSingleBonds-2.svg gave hash 465473374U not the expected 1174395532U 163: file testWedgeNonSingleBonds-3.svg gave hash 2761716211U not the expected 2542970771U 163: file testWedgeNonSingleBonds-4.svg gave hash 1744898749U not the expected 700876833U 163: file testWedgeNonSingleBonds-5.svg gave hash 725983439U not the expected 2012191155U 163: file testWedgeNonSingleBonds-6.svg gave hash 478779300U not the expected 2517061935U 163: file testWedgeNonSingleBonds-7.svg gave hash 3160204290U not the expected 157069219U 163: file testWedgeNonSingleBonds-8.svg gave hash 1462975976U not the expected 3431784338U 163: file testWedgingShouldBeOnSingleBond.svg gave hash 354676681U not the expected 1002741488U 163: file testDuplicateEnhancedStereoLabelsAddAnnotationFalse.svg gave hash 596604646U not the expected 2980189527U 163: file testDuplicateEnhancedStereoLabelsAddAnnotationTrue.svg gave hash 596604646U not the expected 1462263453U 163: file testComplexQueryAtomMap.svg gave hash 1780085415U not the expected 722421835U 163: file testHighlightHeteroAtoms_1.svg gave hash 1075019271U not the expected 1769258632U 163: file testHighlightHeteroAtoms_2.svg gave hash 1842539731U not the expected 893937335U 164: file rxn_test1_7.png gave hash 2288291866U not the expected 1461397406U 164: file rxn_test1_7.svg gave hash 3818263825U not the expected 1831465890U 163: file testGithub_7739_1.svg gave hash 2522396274U not the expected 2615562225U 164: Done 164: ----------------- Test 2: some examples that caused problems in testing 163: file testGithub_7739_2.svg gave hash 1109975419U not the expected 2225049332U 164: file rxn_test2_1.png gave hash 381540309U not the expected 3551633840U 163: file testGithub_7739_3.svg gave hash 1557300042U not the expected 1037942338U 164: file rxn_test2_1.svg gave hash 2863536167U not the expected 3702350010U 163: file testGithub_7739_4.svg gave hash 3108591679U not the expected 3549083171U 164: 3 [cH:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1>>CC(C)[c:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1 CN1CCC(CC1)N(C)S(=O)(=O)c2ccccc2 CC(C)c1ccc(cc1)S(=O)(=O)N(C)C2CCN(CC2)C 163: file testGithub_7739_5.svg gave hash 3748355106U not the expected 1114216032U 163: file testAtomAbbreviationsClash.svg gave hash 222225321U not the expected 1847939197U 163: file testBlackAtomsUnderHighlight.svg gave hash 1437801379U not the expected 3916069581U 163: file testSmallReactionCanvas.svg gave hash 1550481432U not the expected 2238356155U 164: file rxn_test2_2_1.png gave hash 106320165U not the expected 1268122583U 163: file testReactionProductSmoothCorners.svg gave hash 2404050427U not the expected 882352670U 163: file testOptionalAtomListBrackets_1.svg gave hash 3829750483U not the expected 4239908626U 163: file testOptionalAtomListBrackets_2.svg gave hash 562987240U not the expected 3881772214U 163: file testOptionalAtomListBrackets_3.svg gave hash 3781855073U not the expected 2945415850U 164: file rxn_test2_2_1.svg gave hash 3853350160U not the expected 3044844617U 164: 3 [cH:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1>>[cH:3]1[cH:2][c:1]([cH:6][cH:5][c:4]1)Cl Cc1cccc(c1C)N2CCN(CC2)CCCNC(=O)c3cc([nH]c3C)c4ccccc4 Cc1cccc(c1C)N2CCN(CC2)CCCNC(=O)c3cc([nH]c3C)c4ccc(cc4)Cl 163: file testReactionPanels.svg gave hash 2401329499U not the expected 1616500155U 163: file testComponentPadding_1.svg gave hash 86889591U not the expected 2488754565U 163: file testComponentPadding_2.svg gave hash 3183164058U not the expected 2544322406U 164: file rxn_test2_2_2.png gave hash 1290392038U not the expected 82821108U 164: file rxn_test2_2_2.svg gave hash 72786277U not the expected 269990608U 164: 2 Cc1c(cc([nH]1)[c:1]2[cH:2][cH:3][cH:4][cH:5][cH:6]2)[C:7](=[O:8])[NH:9][CH2:10][CH2:11]>>CCc1nc(c(n1[c:1]2[cH:2][cH:3][cH:4][cH:5][cH:6]2)C)[C:7](=[O:8])[NH:9][CH2:10][CH2:11] Cc1c(cc([nH]1)c2ccccc2)C(=O)NCCN3CCN(C 164: 2 C3)c4cccc(c4Cl)Cl CCc1nc(c(n1c2ccccc2)C)C(=O)NCCN3CCN(CC3)c4cccc(c4Cl)Cl 164: 3 [c:1][C:2](=[O:3])[NH:4]CCC[CH2:5][N:6]([CH2:7])[CH2:8]>>[c:1][C:2](=[O:3])[NH:4]C[CH2:5][N:6]([CH2:7])[CH2:8] CCCn1c(c(cc1c2ccccc2)C(=O)NCCCCN3CCN(CC3)c4cccc(c4Cl)Cl)C CCCn1c(c(cc1c2ccccc2)C(=O)NCCN3CCN(CC3)c4cccc(c4Cl)Cl)C 163: file testAtomAndBondLabels_1.svg gave hash 3854792861U not the expected 288825710U 163: file testAtomAndBondLabels_2.svg gave hash 4131152872U not the expected 3501435082U 163: file testAtomAndBondLabels_3.svg gave hash 934726898U not the expected 3056536314U 163: file testAtomAndBondLabels_4.svg gave hash 1457363143U not the expected 229616498U 163: file testStandardColoursHighlightedAtoms_1.svg gave hash 4021373646U not the expected 4265528904U 163: file testStandardColoursHighlightedAtoms_2.svg gave hash 2006999042U not the expected 2285000572U 163: file testArrowheads.svg gave hash 177824424U not the expected 3318006834U 164: file rxn_test2_2_3.png gave hash 203175959U not the expected 3828365604U 163: file testOffsetHighlightedMols.svg gave hash 1374346153U not the expected 3147614756U 163: =============================================================================== 163: All tests passed (6874 assertions in 120 test cases) 163: 157/246 Test #163: moldraw2DTestCatch ..................... Passed 5.72 sec test 165 Start 165: pyMolDraw2D 165: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py" 165: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolDraw2D/Wrap 165: Test timeout computed to be: 7200 164: file rxn_test2_2_3.svg gave hash 1995182177U not the expected 2459428150U 164: 3 [CH3:1]c1c(cc(n1[CH3:2])C(C)(C)C)[C:3]>>[CH3:2]c1c(c(nc(n1)[CH3:1])[C:3])OC Cc1cccc(c1C)N2CCN(CC2)CCNC(=O)c3cc(n(c3C)C)C(C)(C)C Cc1cccc(c1C)N2CCN(CC2)CCNC(=O)c3c(c(nc(n3)C)C)OC 164: file rxn_test2_2_4.png gave hash 1096668109U not the expected 1230108677U 164: file rxn_test2_2_4.svg gave hash 573062586U not the expected 2528579930U 164: Done 164: ----------------- Test 3: test reactant highlighting 164: file rxn_test3_1.png gave hash 4112529299U not the expected 4189980366U 164: file rxn_test3_1.svg gave hash 3362884215U not the expected 2912956802U 164: Done 164: ----------------- Test 4: some examples from SMARTS in testing 164: draw! 164: file rxn_test4_1.png gave hash 1800494905U not the expected 2745201873U 164: file rxn_test4_1.svg gave hash 2517063300U not the expected 1758099294U 164: done 164: file rxn_test4_2.png gave hash 168316524U not the expected 3094925886U 164: file rxn_test4_2.svg gave hash 477046251U not the expected 3493436271U 164: Done 158/246 Test #164: moldraw2DRxnTest1 ...................... Passed 1.00 sec test 166 Start 166: testFMCS 166: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/testFMCS 166: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS 166: Test timeout computed to be: 7200 165: ...[04:02:27] Font file /build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolDraw2D/Amadeus.ttf not found. 165: [04:02:27] Falling back to original font file /build/reproducible-path/rdkit-202503.6/Data/Fonts/Telex-Regular.ttf. 165: ..........[04:02:27] 165: 165: **** 165: Pre-condition Violation 165: molecule must not be None 165: Violation occurred on line 432 in file ./Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp 165: Failed Expression: m 165: ---------- 165: Stacktrace: 165: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 165: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 165: 2# RDKit::prepMolForDrawing(RDKit::ROMol const*, bool, bool, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/Draw/rdMolDraw2D.so 165: 3# boost::python::objects::caller_py_function_impl, boost::mpl::vector7 > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/Draw/rdMolDraw2D.so 165: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 5# 0x00007FFF927AAD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 165: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 165: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 165: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 165: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 15# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 165: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 17# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 165: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 19# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 165: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 21# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 165: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 23# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 165: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 25# 0x00007FFF919A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 165: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 27# 0x00007FFF919A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 165: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 29# 0x00007FFF919A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 165: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 31# 0x00007FFF919A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 165: 32# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 33# 0x00007FFF919A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 165: 34# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 35# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 165: 36# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 37# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 165: 38# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 39# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 165: 40# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 41# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 165: 42# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 43# 0x00007FFF927A6264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 165: 44# _PyObject_MakeTpCall in /usr/bin/python3 165: 45# _PyEval_EvalFrameDefault in /usr/bin/python3 165: 46# 0x0000000010162EE0 in /usr/bin/python3 165: 47# 0x00000000101B9704 in /usr/bin/python3 165: 48# 0x0000000010181FB4 in /usr/bin/python3 165: 49# _PyEval_EvalFrameDefault in /usr/bin/python3 165: 50# 0x000000001030064C in /usr/bin/python3 165: 51# 0x0000000010258FE4 in /usr/bin/python3 165: 52# _PyObject_MakeTpCall in /usr/bin/python3 165: 53# _PyEval_EvalFrameDefault in /usr/bin/python3 165: 54# 0x0000000010162EE0 in /usr/bin/python3 165: 55# 0x00000000101B9704 in /usr/bin/python3 165: 56# 0x0000000010181FB4 in /usr/bin/python3 165: 57# _PyEval_EvalFrameDefault in /usr/bin/python3 165: 58# 0x000000001030064C in /usr/bin/python3 165: 59# 0x0000000010258FE4 in /usr/bin/python3 165: 60# _PyObject_MakeTpCall in /usr/bin/python3 165: 61# _PyEval_EvalFrameDefault in /usr/bin/python3 165: 62# 0x0000000010162EE0 in /usr/bin/python3 165: 63# 0x00000000101B9704 in /usr/bin/python3 165: 64# 0x0000000010181FB4 in /usr/bin/python3 165: 65# _PyEval_EvalFrameDefault in /usr/bin/python3 165: 66# 0x000000001030064C in /usr/bin/python3 165: 67# 0x0000000010258FE4 in /usr/bin/python3 165: 68# _PyObject_MakeTpCall in /usr/bin/python3 165: 69# _PyEval_EvalFrameDefault in /usr/bin/python3 165: 70# 0x000000001016F888 in /usr/bin/python3 165: 71# _PyObject_MakeTpCall in /usr/bin/python3 165: 72# _PyEval_EvalFrameDefault in /usr/bin/python3 165: 73# PyEval_EvalCode in /usr/bin/python3 165: 74# 0x000000001032E06C in /usr/bin/python3 165: 75# 0x000000001032844C in /usr/bin/python3 165: 76# 0x00000000103689CC in /usr/bin/python3 165: 77# 0x00000000103680D0 in /usr/bin/python3 165: 78# 0x0000000010367DA4 in /usr/bin/python3 165: 79# Py_RunMain in /usr/bin/python3 165: 80# 0x00000000102E95E8 in /usr/bin/python3 165: 81# Py_BytesMain in /usr/bin/python3 165: 82# 0x00007FFF94627224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 165: 83# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 165: ---------- 165: **** 165: 165: ........................ 165: ---------------------------------------------------------------------- 165: Ran 37 tests in 0.646s 165: 165: OK 165: json lasso 159/246 Test #165: pyMolDraw2D ............................ Passed 1.18 sec test 167 Start 167: pyFMCS 167: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/FMCS/Wrap/testFMCS.py" 167: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Wrap 167: Test timeout computed to be: 7200 166: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds 166: Time elapsed 0.000 seconds 166: 166: test32() 166: MCS: [#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#6]=[#6]-[#6](-[#7]-[#6]1:[#6]:[#6](-[#16](-[#7]2-[#6]-[#6]-[#8]-[#6]-[#6]-2)(=[#8])=[#8]):[#6]:[#6]:[#6]:1-[#7](-[#6]-[#6])-[#6]-[#6])=[#8] 31 atoms, 33 bonds 166: Time elapsed 0.072 seconds 166: 166: test190() 166: MCS: [#6]1:[#6]:[#6]2:[#8]:[#6](:[#7]:[#6]:2:[#6]:[#6]:1)-[#6]1:[#6]:[#6](-[#7]-[#6](=[#8])-[#6]):[#6]:[#6]:[#6]:1 19 atoms, 21 bonds 166: Time elapsed 0.009 seconds 166: 166: test3() 166: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6]-[#6](=[#8])-[#7]-[#6]-[#6]-[#6]-[#6] 14 atoms, 14 bonds 166: Time elapsed 0.016 seconds 166: 166: testSimpleFast() 166: MCS: [#6]-[#8]-[#6]-[#6]1:[#6]:[#7]:[#6]:[#6](:[#6]:1):[#7]:[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#8]-[#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#17] 24 atoms, 26 bonds 166: Time elapsed 0.121 seconds 166: 166: testSimple() 166: MCS: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds 166: Time elapsed 0.103 seconds 166: MCS MatchFusedRings: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds 166: Time elapsed 0.113 seconds 166: MCS MatchFusedRingsStrict: [#6]-&!@[#6]-&!@[#6](-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6]-&!@[#7]-&!@[#6](=&!@[#8])-&!@[#6])-&!@[#6](-&!@[#7]-&!@[#6])=&!@[#8] 15 atoms, 14 bonds 166: Time elapsed 0.120 seconds 166: 166: testSegFault() 166: MCS: [#6]1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@1 6 atoms, 6 bonds 166: Time elapsed 0.009 seconds 166: MCS MatchFusedRings: [#6]1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@1 6 atoms, 6 bonds 166: Time elapsed 0.015 seconds 166: MCS MatchFusedRingsStrict: [#6;r6,!R1]1:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@[#6;r6,!R1]:&@1 6 atoms, 6 bonds 166: Time elapsed 0.010 seconds 166: 166: testThreshold() 166: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds 166: Time elapsed 0.000 seconds 166: 166: testRing1() 166: MCS: [#6]-&!@[#8]-&!@[#6]-&!@[#6]1:&@[#6]:&@[#7]:&@[#6]:&@[#6]2:&@[#6]:&@1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#7]:&@2 16 atoms, 17 bonds 166: Time elapsed 0.513 seconds 166: MCS MatchFusedRings: [#6]-&!@[#8]-&!@[#6]-&!@[#6]1:&@[#6]:&@[#7]:&@[#6]:&@[#6]2:&@[#6]:&@1:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#6]:&@[#7]:&@2 16 atoms, 17 bonds 166: Time elapsed 0.565 seconds 166: MCS MatchFusedRingsStrict: [#6;r6,!R1]1:&@[#6;r6,!R1]:&@[#7;r6,!R1]:&@[#6;r6,!R1](:&@[#6]:&@[#6]:&@1)-&!@[#6](=&!@[#8])-&!@[#8]-&!@[#6](-&!@[#6])-&!@[#6] 12 atoms, 12 bonds 166: Time elapsed 0.392 seconds 166: 166: testAtomCompareIsotopes() 166: MCS: [0*]-[0*]-[13*] 3 atoms, 2 bonds 166: Time elapsed 0.000 seconds 166: 166: testAtomCompareAnyAtom() 166: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds 166: Time elapsed 0.000 seconds 166: 166: testAtomCompareAnyAtom() 166: MCS: [#6]1-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:1=,-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds 166: Time elapsed 0.000 seconds 166: 166: testAtomCompareAnyAtom() 166: MCS: [#1]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#8] 8 atoms, 8 bonds 166: Time elapsed 0.000 seconds 166: 166: testAtomCompareAnyAtom() 166: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#8] 7 atoms, 7 bonds 166: Time elapsed 0.000 seconds 166: 166: testJnk1LigandsDistance() 166: MCS: [#6]-[#6]-[#8]-[#6]1:[#6](:[#6](:[#6]:[#6](:[#7]:1)-[#7]-[#6](=[#8])-[#6]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)-[#7])-[#6]#[#7] CCOc1nc(NC(=O)Cc2ccccc2)cc(N)c1C#N 22 atoms, 23 bonds 166: Time elapsed 0.005 seconds 166: MCS: [#6]-[#6]-[#8]-[#6]1:[#6](:[#6](:[#6]:[#6](:[#7]:1)-[#7]-[#6](=[#8])-[#6]-[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#6,#8])-[#7])-[#6]#[#7] *c1cccc(CC(=O)Nc2cc(N)c(C#N)c(OCC)n2)c1 23 atoms, 24 bonds 166: Time elapsed 0.001 seconds 166: 166: test18() 166: Query +MAP [CH3:0][c:1]1[n:2][c:3]([CH2:4][N:5]([CH:6]([CH3:7])[c:8]2[n:9][cH:10][cH:11][cH:12][cH:13]2)[CH2:14][CH2:15][CH2:16][CH2:17][NH2:18])[cH:19][cH:20][cH:21]1 166: MCS: [#6](:[#7]:[#6]-[#6]-[#7](-[#6](-[#6])-[#6]1:[#7]:[#6]:[#6]:[#6]:[#6]:1)-[#6]-[#6]-[#6]-[#6]-[#7]):[#6]:[#6]:[#6] 21 atoms, 21 bonds 166: Time elapsed 0.004 seconds 166: 166: test504() 166: Query +MAP [CH2:0]([CH2:1][CH2:2][NH:3][C:4]([CH:5]1[CH2:6][CH:7]1[c:8]1[c:9][c:10]([Cl:11])[c:12]([Cl:13])[cH:14][c:15]1)=[O:16])[CH2:17][CH2:18][N:19]1[CH2:20][CH2:21][CH:22]([NH:23][C:24]([NH:25][c:26]2[cH:27][cH:28][c:29]([Cl:30])[cH:31][cH:32]2)=[O:33])[CH2:34]1 166: MCS: [#6](-[#6]-[#6]-[#7]-[#6](-[#6]1-[#6]-[#6]-1-[#6]1:[#6]:[#6](-[#17]):[#6](:[#6]:[#6]:1)-[#17])=[#8])-[#6]-[#6]-[#7](-[#6]-[#6]-[#6]-[#7]-[#6](-[#7]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)=[#8])-[#6] 34 atoms, 36 bonds 166: Time elapsed 0.050 seconds 166: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds 166: Time elapsed 0.001 seconds 166: MCS: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6] 25 atoms, 28 bonds 166: Time elapsed 0.013 seconds 166: Query Cc1c(F)c(N2CCNC(C)C2)cc2c1c(=O)c(C(=O)O)cn2C1CC1 26(26) atoms, 29(28) bonds 166: 1 Seeds:1 MCS 25 atoms, 28 bonds for 0.0006 seconds. bond[0]=6 166: STATISTICS: 166: Total Growing Steps = 1, MCS found on 1 step, for 0.0006 seconds 166: Initial Seeds = 1, Mismatched 0 166: Inspected Seeds = 2 166: Rejected by BestSize = 0 166: IndividualBondExcluded = 0 166: MatchCheck Seeds = 2 166: MatchCalls = 2 166: MatchFound = 1 166: fastMatchCalls = 1 166: fastMatchFound = 0 166: slowMatchCalls = 2 166: slowMatchFound = 1 166: DupCacheFound = 0 0 matched, 0 mismatched 166: HashCache size = 1 keys 166: HashCache size = 1 entries 166: FindHashInCache = 2 166: HashFoundInCache= 0 166: ExactMatchCalls = 0 166: ExactMatchFound = 0 166: Time elapsed 0.001 seconds 166: query=OCCl SubstructMatch(useChirality=false) res =1 size=3 166: query=OCCl SubstructMatch(useChirality=true ) res =1 size=3 166: test target = O[C@H](F)CCl query = C(F)C useChirality = 0 166: res sub = 1 size=3 166: MCS: [#6](-[#9])-[#6] 3 atoms, 2 bonds 166: test target = O[C@H](F)CCl query = C(F)C useChirality = 1 166: res sub = 1 size=3 166: MCS: [#6](-[#9])-[#6] 3 atoms, 2 bonds 166: test target = CC[C@H](F)Cl query = CCC useChirality = 0 166: res sub = 1 size=3 166: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds 166: test target = CC[C@H](F)Cl query = CCC useChirality = 1 166: res sub = 1 size=3 166: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds 166: test target = CCC(F)Cl query = CC useChirality = 0 166: res sub = 1 size=2 166: MCS: [#6]-[#6] 2 atoms, 1 bonds 166: test target = CCC(F)Cl query = CC useChirality = 1 166: res sub = 1 size=2 166: MCS: [#6]-[#6] 2 atoms, 1 bonds 166: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 0 166: res sub = 1 size=4 166: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 1 166: res sub = 1 size=4 166: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 0 166: res sub = 1 size=4 166: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 1 166: res sub = 1 size=4 166: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = O[C@H](F)CCl query = CC(F)C useChirality = 0 166: res sub = 0 size=0 166: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds 166: test target = O[C@H](F)CCl query = CC(F)C useChirality = 1 166: res sub = 0 size=0 166: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds 166: test target = O[C@H](F)CCl query = OC(F)C useChirality = 0 166: res sub = 1 size=4 166: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = O[C@H](F)CCl query = OC(F)C useChirality = 1 166: res sub = 1 size=4 166: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 0 166: res sub = 1 size=4 166: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 1 166: res sub = 1 size=4 166: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 0 166: res sub = 1 size=4 166: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 1 166: res sub = 0 size=0 166: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds 166: test target = OC(F)CCl query = OC(F)C useChirality = 0 166: res sub = 1 size=4 166: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = OC(F)CCl query = OC(F)C useChirality = 1 166: res sub = 1 size=4 166: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = OC(F)CCl query = O[C@H](F)C useChirality = 0 166: res sub = 1 size=4 166: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = OC(F)CCl query = O[C@H](F)C useChirality = 1 166: res sub = 0 size=0 166: MCS: [#9] 1 atoms, 0 bonds 166: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 0 166: res sub = 1 size=4 166: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds 166: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 1 166: res sub = 0 size=0 166: MCS: [#9] 1 atoms, 0 bonds 166: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 0 166: res sub = 1 size=3 166: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds 166: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 1 166: res sub = 1 size=3 166: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds 166: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 0 166: res sub = 1 size=3 166: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds 166: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 1 166: res sub = 1 size=3 166: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds 166: 166: 0. <<<<<<<<< actual MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds >>>>>>> 166: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 0 166: res sub = 1 size=3 166: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds 166: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 1 166: res sub = 1 size=3 166: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds 166: done 166: [04:02:31] The provided InitialSeed is not an MCS and will be ignored 151: .........[04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: .[04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: .[04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 151: [04:02:32] Molecule does not have explicit Hs. Consider calling AddHs() 153: --------------------------------- 153: test O3A multithreading bug 153: 153: --------------------------------- 153: testCrippenO3A multithreading 153: 153: generating reference data 153: processing 153: launch :0 153: launch :1 153: launch :2 153: launch :3 167: ........................................[04:02:34] The provided InitialSeed is not an MCS and will be ignored 167: [04:02:34] The provided InitialSeed is not an MCS and will be ignored 167: [04:02:34] The provided InitialSeed is not an MCS and will be ignored 167: .[04:02:34] The provided InitialSeed is not an MCS and will be ignored 167: [04:02:35] The provided InitialSeed is not an MCS and will be ignored 167: [04:02:35] The provided InitialSeed is not an MCS and will be ignored 167: .[04:02:35] The provided InitialSeed is not an MCS and will be ignored 167: [04:02:35] The provided InitialSeed is not an MCS and will be ignored 167: [04:02:35] The provided InitialSeed is not an MCS and will be ignored 167: .[04:02:35] The provided InitialSeed is not an MCS and will be ignored 167: [04:02:35] The provided InitialSeed is not an MCS and will be ignored 167: [04:02:35] The provided InitialSeed is not an MCS and will be ignored 167: ................. 167: ---------------------------------------------------------------------- 167: Ran 60 tests in 6.770s 167: 167: OK 160/246 Test #167: pyFMCS ................................. Passed 7.37 sec test 168 Start 168: FMCStest 168: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Test/FMCStest 168: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/FMCS/Test 168: Test timeout computed to be: 7200 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_15113.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_16613.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_30745.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_30861.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_31495.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_34869.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_36158.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_36559.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_37434.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_39147.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_43754.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_44011.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_44158.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_48076.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_48961.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_49648.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_49703.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_51128.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_51343.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_51842.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_54554.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_100_55749.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_17256.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_20244.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_20245.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_30149.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_30499.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_36186.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_39262.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_43966.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_45279.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_48029.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_49064.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_49801.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_50681.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_54039.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58265.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58358.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58866.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10188_60810.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_21358.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_21597.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_30111.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_30349.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_31746.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_31822.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_35220.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_37603.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_37964.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_39508.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_42164.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_42577.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_44072.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_45522.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46700.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46719.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46744.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_48517.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_49087.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_50034.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_51475.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_53483.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_53506.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_54598.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_55614.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_55737.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57090.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57705.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57785.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_58463.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_58700.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_61003.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10193_61349.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10260_38526.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10260_50778.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10260_52179.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10260_54285.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_30224.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_31222.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37349.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37369.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37465.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37541.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_38371.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_44314.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_44578.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_45765.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_46281.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_47928.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_50624.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51341.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51662.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51767.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53081.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53396.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53407.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_58823.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_59190.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_60672.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10280_61176.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10434_20905.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30074.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30175.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30423.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10434_31555.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10434_34878.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10434_35926.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10434_42168.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_20859.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_30060.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_30061.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_30606.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_30866.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_31249.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_34921.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_35188.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_36636.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_37466.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_39202.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_43952.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_49345.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_49591.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_49854.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_51416.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_53537.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_58879.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_60679.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_107_61269.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_20600.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_20859.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_30060.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_30606.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_30866.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_31558.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_35188.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_37466.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_43875.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_48911.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_49591.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_49854.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: no_108_57887.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_60679.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_108_6857.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_15478.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_20853.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30840.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30862.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30918.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30994.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31014.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31508.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31623.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35003.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35004.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35281.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35957.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_36520.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_36641.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_38586.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_44431.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_45093.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_51302.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_5247.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_52937.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_57198.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_5739.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_10980_6535.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_20205.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_20986.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_30091.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_34698.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_34705.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37038.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37272.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37447.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_38909.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_38953.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_39472.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_45825.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_47179.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_49028.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_49860.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_51984.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_53395.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_53826.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_54121.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_54530.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_55738.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_57725.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11140_58590.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11365_20432.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11365_30331.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11365_37956.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11365_48114.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11365_58566.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_34731.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_34818.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37318.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37339.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37564.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_39504.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_39561.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_46082.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_46089.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_47349.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_47757.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_51593.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_54754.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_58262.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11489_58958.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_16827.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_20503.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_20724.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_30254.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_30321.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_30572.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_31116.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_31281.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_31443.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_34747.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_34920.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_35040.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_36623.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_37136.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_37208.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_38298.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_38554.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_39088.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_39543.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_44049.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_44562.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_45180.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_45867.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_46087.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_46829.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_47546.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_48395.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_50461.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_50765.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_51669.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_52381.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_57231.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_114_58246.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_30999.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_31021.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_31650.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_35011.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_37014.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_44598.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_48446.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50614.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50615.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50618.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11534_51950.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11575_31616.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11575_38381.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11575_45757.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11575_46816.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11575_50701.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11575_54049.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11575_57890.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11575_61045.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11631_30194.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11631_31421.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11631_35538.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11631_55727.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11631_60676.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11631_61130.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_11631_6444.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_15623.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_20096.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_21591.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_30184.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_30380.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_30745.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_30861.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_31619.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_34869.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_35284.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_36158.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_36915.txt 168: 168: testChEMBL_Txfopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: t() chembl_II_sets/Target_no_121_37434.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_37541.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_37677.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_38837.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_39530.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_43793.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_44158.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_44164.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_44579.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_44593.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_44692.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_44914.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_45878.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_48050.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_48706.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_48944.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_48961.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_49880.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_50055.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_50512.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_51064.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_53537.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_55749.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_58879.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_121_6876.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12209_44664.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12209_46451.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12209_50640.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12209_56102.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12209_58015.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12209_59089.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12209_59092.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12209_61340.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12252_31458.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12252_38481.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12252_42104.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12252_49475.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12252_49933.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12252_50558.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_126_37249.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_126_39117.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_126_48227.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_126_48229.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_126_53969.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_126_54262.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_126_55353.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_126_61212.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20250.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20506.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20626.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20689.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_21358.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_30158.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_30349.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_34843.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_35220.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_36318.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_36800.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_39349.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_45385.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_45676.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_46700.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_46719.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_48517.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_52690.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_53483.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_55435.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_56102.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58015.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58375.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58700.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_13001_16724.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_13001_2710.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_13001_30128.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_13001_31250.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_13001_35519.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_13001_36905.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_13001_46788.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_13001_4737.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_13001_55736.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_13001_57473.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_16146.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_30313.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_30539.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_30653.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_30988.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_31179.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_31339.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_3525.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_36886.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_37020.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_38128.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_43952.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_45210.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_45899.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_47889.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_51800.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_53158.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_5330.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_55648.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_56096.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_57287.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_57399.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_57606.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_58470.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_130_60894.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_15010.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_20304.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_20542.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_20788.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_21358.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_30349.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_31103.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_31764.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_31822.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_35220.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_37964.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_42164.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_44072.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_45522.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_46719.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_46744.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_48416.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_49740.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_50034.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_50640.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_53483.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_53506.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_53814.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_55435.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_56074.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_56107.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_57090.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_57705.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_57785.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_57861.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_58583.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_59089.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_15_59092.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_20600.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_30764.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_34876.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_37427.tfopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: xt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_38266.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_45283.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_46990.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_47123.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_47900.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_48050.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_48062.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_48076.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_50718.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_50972.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_51372.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_51830.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_53049.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_53505.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_54021.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_54565.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_54570.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_57666.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_57890.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_58072.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_58634.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_58643.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_59080.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_59202.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_59346.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_60379.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_60385.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_165_61098.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_17045_31154.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_17045_35648.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_17045_48914.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_17045_51975.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_17045_52435.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_17045_55790.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_17045_58958.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_17045_61146.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20191.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20562.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20606.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20607.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30003.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30402.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30726.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30924.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31457.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31460.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31600.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31620.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31640.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31782.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31797.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31829.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31856.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34690.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34691.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34694.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_35712.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_37497.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_37539.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48070.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48219.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48824.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48902.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_52867.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_53534.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_54570.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_58727.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_60159.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_19905_60661.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_30037.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_34734.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_35365.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_35787.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_36793.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_37845.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_38328.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_39374.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_43936.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_44059.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_44405.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_44424.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_45166.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_46158.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_46425.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_47187.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_48435.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_48817.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_48849.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_48957.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_48965.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_49519.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_49921.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_50392.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_50972.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_52405.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_52442.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_53169.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_54640.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_57207.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_58537.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_58920.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_259_60358.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_25_16077.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_25_34943.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_25_36391.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_25_36574.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_25_52906.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_25_54642.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_16385.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_20333.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_20774.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_35825.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_37637.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_47741.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_48567.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_48841.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_49589.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_50564.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_51201.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_53150.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_55747.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_43_58276.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_20813.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_2331.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_2391.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_30374.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_30512.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_30796.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_31058.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_31450.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_36609.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_36636.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_38266.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_43800.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_47621.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_49433.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_49550.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_49865.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_51005.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_52373.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_53878.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_54554.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_57508.txtfopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: fopen testChEMBL_Txt(): No such file or directory 168: 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_57618.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_59484.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_51_6563.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_61_16845.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_61_37106.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_61_37272.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_61_47947.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_61_50754.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_61_55800.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_61_57380.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_65_35328.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_65_36137.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_65_38826.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_65_44596.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_65_51275.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_65_55671.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_20155.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_30616.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_30653.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_30988.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_31339.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_31527.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_31631.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_36047.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_36568.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_36636.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_37020.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_38128.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_43952.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_45210.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_47889.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_51064.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_51800.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_5330.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_57508.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_58470.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_72_60894.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_20730.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_20753.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_30097.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_30663.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_35365.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_35375.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_35918.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_36010.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_36780.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_36793.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_37845.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_39110.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_39546.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_43936.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_44405.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_44424.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_44683.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_45166.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_46648.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_46986.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_47070.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_47187.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_48435.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_48817.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_49138.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_49460.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_49519.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_49532.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_49829.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_50608.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_54640.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_87_61082.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_90_15727.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_90_20155.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_90_30407.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_90_3525.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_93_12377.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_93_1308.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_93_34759.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_93_35447.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_93_42214.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_93_45877.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_93_47082.txt 168: 168: testChEMBL_Txt() chembl_II_sets/Target_no_93_57082.txt 168: 168: testFileSDF_RandomSet(): benchmark/chembl13-10000-random-pairs.sdf 168: ERROR: RDKit could not load input file 168: 168: testFileSDF_RandomSet(): benchmark/chembl13_pairs.smi 168: ERROR: RDKit could not load input file 168: 168: testFileSDF_RandomSet(): benchmark/chembl13_knearest_2.smi 168: ERROR: RDKit could not load input file 168: 168: testFileSDF_RandomSet(): benchmark/chembl13_knearest_10.smi 168: ERROR: RDKit could not load input file 168: 168: testFileSDF_RandomSet(): benchmark/chembl13_knearest_100.smi 168: ERROR: RDKit could not load input file 168: 168: testFileSDF_RandomSet(): benchmark/chembl13_threshold_80.smi 168: ERROR: RDKit could not load input file 168: 168: testFileSDF_RandomSet(): benchmark/chembl13_threshold_90.smi 168: ERROR: RDKit could not load input file 161/246 Test #168: FMCStest ............................... Passed 0.04 sec test 169 Start 169: molHashCatchTest 169: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash/molHashCatchTest 169: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash 169: Test timeout computed to be: 7200 169: Randomness seeded to: 2483843818 169: =============================================================================== 169: All tests passed (411 assertions in 18 test cases) 169: 162/246 Test #169: molHashCatchTest ....................... Passed 0.15 sec test 170 Start 170: pyMolHash 170: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolHash/Wrap/testMolHash.py" 170: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolHash/Wrap 170: Test timeout computed to be: 7200 170: .... 170: ---------------------------------------------------------------------- 170: Ran 4 tests in 0.016s 170: 170: OK 163/246 Test #170: pyMolHash .............................. Passed 0.65 sec test 171 Start 171: testMMPA 171: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA/testMMPA 171: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA 171: Test timeout computed to be: 7200 171: 171: TEST mol: Case1 Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1 Case1 171: Time elapsed 0.002494 seconds 171: 1: res= NULL,C[*:1].C[C:7](C(=O)Nc1ccccc1[*:1])[NH+]1CCCC1 171: 1: NOREF. Reference data NOT LISTED in test case. 171: 2: res= c1ccc([*:2])c([*:1])c1,C[*:1].C[C:7](C(=O)N[*:2])[NH+]1CCCC1 171: 2: NOREF. Reference data NOT LISTED in test case. 171: 3: res= O=C(Nc1ccccc1[*:1])[*:2],C[*:1].C[C:7]([NH+]1CCCC1)[*:2] 171: 3: NOREF. Reference data NOT LISTED in test case. 171: 4: res= O=C(Nc1ccccc1[*:1])[C:7]([NH+]1CCCC1)[*:2],C[*:1].C[*:2] 171: 4: NOREF. Reference data NOT LISTED in test case. 171: 5: res= O=C(Nc1ccccc1[*:1])[C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].C[*:2] 171: 5: NOREF. Reference data NOT LISTED in test case. 171: 6: res= C[C:7](C(=O)Nc1ccccc1[*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1] 171: 6: NOREF. Reference data NOT LISTED in test case. 171: 7: res= NULL,C[C:7](C(=O)N[*:1])[NH+]1CCCC1.Cc1ccccc1[*:1] 171: 7: NOREF. Reference data NOT LISTED in test case. 171: 8: res= O=C(N[*:2])[*:1],C[C:7]([NH+]1CCCC1)[*:1].Cc1ccccc1[*:2] 171: 8: NOREF. Reference data NOT LISTED in test case. 171: 9: res= O=C(N[*:2])[C:7]([NH+]1CCCC1)[*:1],C[*:1].Cc1ccccc1[*:2] 171: 9: NOREF. Reference data NOT LISTED in test case. 171: 10: res= O=C(N[*:3])[C:7]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1].Cc1ccccc1[*:3] 171: 10: NOREF. Reference data NOT LISTED in test case. 171: 11: res= C[C:7](C(=O)N[*:2])[*:1],C1CC[NH+]([*:1])C1.Cc1ccccc1[*:2] 171: 11: NOREF. Reference data NOT LISTED in test case. 171: 12: res= NULL,C[C:7]([NH+]1CCCC1)[*:1].Cc1ccccc1NC(=O)[*:1] 171: 12: NOREF. Reference data NOT LISTED in test case. 171: 13: res= C1CC[NH+]([C:7]([*:1])[*:2])C1,C[*:1].Cc1ccccc1NC(=O)[*:2] 171: 13: NOREF. Reference data NOT LISTED in test case. 171: 14: res= [*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].Cc1ccccc1NC(=O)[*:2] 171: 14: NOREF. Reference data NOT LISTED in test case. 171: 15: res= C[C:7]([*:1])[*:2],C1CC[NH+]([*:2])C1.Cc1ccccc1NC(=O)[*:1] 171: 15: NOREF. Reference data NOT LISTED in test case. 171: 16: res= NULL,C[*:1].Cc1ccccc1NC(=O)[C:7]([NH+]1CCCC1)[*:1] 171: 16: NOREF. Reference data NOT LISTED in test case. 171: 17: res= Cc1ccccc1NC(=O)[C:7]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1] 171: 17: NOREF. Reference data NOT LISTED in test case. 171: 18: res= NULL,C1CC[NH+]([*:1])C1.Cc1ccccc1NC(=O)[C:7](C)[*:1] 171: 18: NOREF. Reference data NOT LISTED in test case. 171: 171: --- UNMATCHED Reference RESULTS: --- 171: 1: Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1,Case1,[*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:2].Cc1ccccc1NC(=O)[*:1] 171: ----------------------------------- 171: Time elapsed 0.006429 seconds 171: 171: TEST 1 mol: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-] ZINC21984717 171: 1: NULL, C[*:1].O=C(NCCO)c1c([*:1])n([O-])c2ccccc2[n+]1=O 171: 1: PASSED. matchedRefRes = 4 171: 2: O=[n+]1c([*:2])c([*:1])n([O-])c2ccccc21, C[*:1].O=C(NCCO)[*:2] 171: 2: PASSED. matchedRefRes = 1 171: 3: O=C(N[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].OCC[*:2] 171: 3: PASSED. matchedRefRes = 6 171: 4: O=C(NC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].OC[*:2] 171: 4: PASSED. matchedRefRes = 13 171: 5: O=C(NCC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].O[*:2] 171: 5: PASSED. matchedRefRes = 12 171: 6: NULL, Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O=C(NCCO)[*:1] 171: 6: PASSED. matchedRefRes = 10 171: 7: O=C(N[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1] 171: 7: NOREF. Reference data NOT LISTED in test case.O=C(N[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1] 171: 8: O=C(NC[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1] 171: 8: NOREF. Reference data NOT LISTED in test case.O=C(NC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1] 171: 9: O=C(NCC[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1] 171: 9: NOREF. Reference data NOT LISTED in test case.O=C(NCC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1] 171: 10: NULL, Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:1] 171: 10: PASSED. matchedRefRes = 3 171: 11: C([*:1])[*:2], Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1] 171: 11: NOREF. Reference data NOT LISTED in test case.C([*:1])[*:2],Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1] 171: 12: C(C[*:2])[*:1], Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2] 171: 12: PASSED. matchedRefRes = 8 171: 13: NULL, Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:1] 171: 13: PASSED. matchedRefRes = 9 171: 14: C([*:1])[*:2], Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2] 171: 14: PASSED. matchedRefRes = 11 171: 15: NULL, Cc1c(C(=O)NCC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:1] 171: 15: PASSED. matchedRefRes = 2 171: 171: --- UNMATCHED Reference RESULTS: --- 171: 5: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,C([*:1])[*:2],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2] 171: 7: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(N[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:2] 171: 14: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NCC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O[*:2] 171: 15: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2] 171: ----------------------------------- 171: 171: TEST mol: ZINC21984717 Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-] ZINC21984717 171: Time elapsed 0.006631 seconds 171: 1: res= NULL,C[*:1].O=C(NCCO)c1c([*:1])n([O-])c2ccccc2[n+]1=O 171: 1: PASSED. matchedRefRes = 4 171: 2: res= O=[n+]1c([*:2])c([*:1])n([O-])c2ccccc21,C[*:1].O=C(NCCO)[*:2] 171: 2: PASSED. matchedRefRes = 1 171: 3: res= O=C(N[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].OCC[*:2] 171: 3: PASSED. matchedRefRes = 6 171: 4: res= O=C(NC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].OC[*:2] 171: 4: PASSED. matchedRefRes = 13 171: 5: res= O=C(NCC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].O[*:2] 171: 5: PASSED. matchedRefRes = 12 171: 6: res= NULL,Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O=C(NCCO)[*:1] 171: 6: PASSED. matchedRefRes = 10 171: 7: res= O=C(N[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1] 171: 7: NOREF. Reference data NOT LISTED in test case. 171: 8: res= O=C(NC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1] 171: 8: NOREF. Reference data NOT LISTED in test case. 171: 9: res= O=C(NCC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1] 171: 9: NOREF. Reference data NOT LISTED in test case. 171: 10: res= NULL,Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:1] 171: 10: PASSED. matchedRefRes = 3 171: 11: res= C([*:1])[*:2],Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1] 171: 11: NOREF. Reference data NOT LISTED in test case. 171: 12: res= C(C[*:2])[*:1],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2] 171: 12: PASSED. matchedRefRes = 8 171: 13: res= NULL,Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:1] 171: 13: PASSED. matchedRefRes = 9 171: 14: res= C([*:1])[*:2],Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2] 171: 14: PASSED. matchedRefRes = 11 171: 15: res= NULL,Cc1c(C(=O)NCC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:1] 171: 15: PASSED. matchedRefRes = 2 171: 171: --- UNMATCHED Reference RESULTS: --- 171: 5: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,C([*:1])[*:2],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2] 171: 7: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(N[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:2] 171: 14: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NCC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O[*:2] 171: 15: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2] 171: ----------------------------------- 171: 171: TEST mol: Case1-SIMPLE CC(N1CC1)C(=O) Case1-SIMPLE 171: Time elapsed 0.000707 seconds 171: 1: res= NULL,C[*:1].O=CC(N1CC1)[*:1] 171: 1: PASSED. matchedRefRes = 2 171: 2: res= O=CC([*:1])[*:2],C1CN1[*:2].C[*:1] 171: 2: PASSED. matchedRefRes = 3 171: 3: res= C([*:1])([*:2])[*:3],C1CN1[*:3].C[*:1].O=C[*:2] 171: 3: NOREF. Reference data NOT LISTED in test case. 171: 4: res= C1CN1C([*:1])[*:2],C[*:1].O=C[*:2] 171: 4: PASSED. matchedRefRes = 4 171: 5: res= NULL,C1CN1[*:1].CC(C=O)[*:1] 171: 5: PASSED. matchedRefRes = 5 171: 6: res= CC([*:1])[*:2],C1CN1[*:2].O=C[*:1] 171: 6: NOREF. Reference data NOT LISTED in test case. 171: 7: res= NULL,CC(N1CC1)[*:1].O=C[*:1] 171: 7: PASSED. matchedRefRes = 7 171: 171: --- UNMATCHED Reference RESULTS: --- 171: 1: CC(N1CC1)C(=O),Case1-SIMPLE,C([*:1])([*:2])[*:3],C1CN1[*:2].C[*:1].O=C[*:3] 171: 6: CC(N1CC1)C(=O),Case1-SIMPLE,CC([*:1])[*:2],C1CN1[*:1].O=C[*:2] 171: ----------------------------------- 171: 171: TEST mol: Case1 Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1 Case1 171: Time elapsed 0.002522 seconds 171: 1: res= NULL,C[*:1].C[C:7](C(=O)Nc1ccccc1[*:1])[NH+]1CCCC1 171: 1: NOREF. Reference data NOT LISTED in test case. 171: 2: res= c1ccc([*:2])c([*:1])c1,C[*:1].C[C:7](C(=O)N[*:2])[NH+]1CCCC1 171: 2: NOREF. Reference data NOT LISTED in test case. 171: 3: res= O=C(Nc1ccccc1[*:1])[*:2],C[*:1].C[C:7]([NH+]1CCCC1)[*:2] 171: 3: NOREF. Reference data NOT LISTED in test case. 171: 4: res= O=C(Nc1ccccc1[*:1])[C:7]([NH+]1CCCC1)[*:2],C[*:1].C[*:2] 171: 4: NOREF. Reference data NOT LISTED in test case. 171: 5: res= O=C(Nc1ccccc1[*:1])[C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].C[*:2] 171: 5: NOREF. Reference data NOT LISTED in test case. 171: 6: res= C[C:7](C(=O)Nc1ccccc1[*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1] 171: 6: NOREF. Reference data NOT LISTED in test case. 171: 7: res= NULL,C[C:7](C(=O)N[*:1])[NH+]1CCCC1.Cc1ccccc1[*:1] 171: 7: NOREF. Reference data NOT LISTED in test case. 171: 8: res= O=C(N[*:2])[*:1],C[C:7]([NH+]1CCCC1)[*:1].Cc1ccccc1[*:2] 171: 8: NOREF. Reference data NOT LISTED in test case. 171: 9: res= O=C(N[*:2])[C:7]([NH+]1CCCC1)[*:1],C[*:1].Cc1ccccc1[*:2] 171: 9: NOREF. Reference data NOT LISTED in test case. 171: 10: res= O=C(N[*:3])[C:7]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1].Cc1ccccc1[*:3] 171: 10: NOREF. Reference data NOT LISTED in test case. 171: 11: res= C[C:7](C(=O)N[*:2])[*:1],C1CC[NH+]([*:1])C1.Cc1ccccc1[*:2] 171: 11: NOREF. Reference data NOT LISTED in test case. 171: 12: res= NULL,C[C:7]([NH+]1CCCC1)[*:1].Cc1ccccc1NC(=O)[*:1] 171: 12: NOREF. Reference data NOT LISTED in test case. 171: 13: res= C1CC[NH+]([C:7]([*:1])[*:2])C1,C[*:1].Cc1ccccc1NC(=O)[*:2] 171: 13: NOREF. Reference data NOT LISTED in test case. 171: 14: res= [*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].Cc1ccccc1NC(=O)[*:2] 171: 14: NOREF. Reference data NOT LISTED in test case. 171: 15: res= C[C:7]([*:1])[*:2],C1CC[NH+]([*:2])C1.Cc1ccccc1NC(=O)[*:1] 171: 15: NOREF. Reference data NOT LISTED in test case. 171: 16: res= NULL,C[*:1].Cc1ccccc1NC(=O)[C:7]([NH+]1CCCC1)[*:1] 171: 16: NOREF. Reference data NOT LISTED in test case. 171: 17: res= Cc1ccccc1NC(=O)[C:7]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1] 171: 17: NOREF. Reference data NOT LISTED in test case. 171: 18: res= NULL,C1CC[NH+]([*:1])C1.Cc1ccccc1NC(=O)[C:7](C)[*:1] 171: 18: NOREF. Reference data NOT LISTED in test case. 171: 171: --- UNMATCHED Reference RESULTS: --- 171: 1: Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1,Case1,[*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:2].Cc1ccccc1NC(=O)[*:1] 171: ----------------------------------- 171: 171: TEST mol: Case2 O=C(OCc1ccccc1)C(O)c1ccccc1 Case2 171: Time elapsed 0.007219 seconds 171: 1: res= NULL,O=C(O[*:1])C(O)c1ccccc1.c1ccc(C[*:1])cc1 171: 1: NOREF. Reference data NOT LISTED in test case. 171: 2: res= C([*:1])[*:2],O=C(O[*:1])C(O)c1ccccc1.c1ccc([*:2])cc1 171: 2: NOREF. Reference data NOT LISTED in test case. 171: 3: res= O=C(O[*:2])[*:1],OC(c1ccccc1)[*:1].c1ccc(C[*:2])cc1 171: 3: NOREF. Reference data NOT LISTED in test case. 171: 4: res= O=C(O[*:1])C(c1ccccc1)[*:2],O[*:2].c1ccc(C[*:1])cc1 171: 4: NOREF. Reference data NOT LISTED in test case. 171: 5: res= O=C(O[*:1])C([*:2])[*:3],O[*:2].c1ccc(C[*:1])cc1.c1ccc([*:3])cc1 171: 5: NOREF. Reference data NOT LISTED in test case. 171: 6: res= O=C(O[*:1])C(O)[*:2],c1ccc(C[*:1])cc1.c1ccc([*:2])cc1 171: 6: NOREF. Reference data NOT LISTED in test case. 171: 7: res= NULL,O=C(OC[*:1])C(O)c1ccccc1.c1ccc([*:1])cc1 171: 7: NOREF. Reference data NOT LISTED in test case. 171: 8: res= O=C(OC[*:2])[*:1],OC(c1ccccc1)[*:1].c1ccc([*:2])cc1 171: 8: NOREF. Reference data NOT LISTED in test case. 171: 9: res= O=C(OC[*:2])C(c1ccccc1)[*:1],O[*:1].c1ccc([*:2])cc1 171: 9: NOREF. Reference data NOT LISTED in test case. 171: 10: res= O=C(OC[*:2])C([*:1])[*:3],O[*:1].c1ccc([*:2])cc1.c1ccc([*:3])cc1 171: 10: NOREF. Reference data NOT LISTED in test case. 171: 11: res= O=C(OC[*:1])C(O)[*:2],c1ccc([*:1])cc1.c1ccc([*:2])cc1 171: 11: NOREF. Reference data NOT LISTED in test case. 171: 12: res= NULL,O=C(OCc1ccccc1)[*:1].OC(c1ccccc1)[*:1] 171: 12: NOREF. Reference data NOT LISTED in test case. 171: 13: res= c1ccc(C([*:1])[*:2])cc1,O=C(OCc1ccccc1)[*:1].O[*:2] 171: 13: NOREF. Reference data NOT LISTED in test case. 171: 14: res= C([*:1])([*:2])[*:3],O=C(OCc1ccccc1)[*:1].O[*:2].c1ccc([*:3])cc1 171: 14: PASSED. matchedRefRes = 1 171: 15: res= OC([*:1])[*:2],O=C(OCc1ccccc1)[*:1].c1ccc([*:2])cc1 171: 15: NOREF. Reference data NOT LISTED in test case. 171: 16: res= NULL,O=C(OCc1ccccc1)C(c1ccccc1)[*:1].O[*:1] 171: 16: NOREF. Reference data NOT LISTED in test case. 171: 17: res= O=C(OCc1ccccc1)C([*:1])[*:2],O[*:1].c1ccc([*:2])cc1 171: 17: NOREF. Reference data NOT LISTED in test case. 171: 18: res= NULL,O=C(OCc1ccccc1)C(O)[*:1].c1ccc([*:1])cc1 171: 18: NOREF. Reference data NOT LISTED in test case. 171: 171: --- ALL PASSED --- 171: ----------------------------------- 171: 5 TEST CASES FAILED 164/246 Test #171: testMMPA ............................... Passed 0.16 sec test 172 Start 172: pyMMPA 172: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MMPA/Wrap/testMMPA.py" 172: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MMPA/Wrap 172: Test timeout computed to be: 7200 33: [04:02:36] Finished 33: [04:02:36] ------------------------------------- 33: [04:02:36] Test github1843: RWMol.clear() should not destroy ring pointer. 33: [04:02:36] Finished 33: [04:02:36] ------------------------------------- 33: [04:02:36] Test Github 6370: non-physical radical counts being preserved 33: [04:02:36] Finished 165/246 Test #33: graphmolTest1 .......................... Passed 68.10 sec test 173 Start 173: testRascalMCES 173: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES/testRascalMCES 173: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES 173: Test timeout computed to be: 7200 151: .... 151: ---------------------------------------------------------------------- 151: Ran 23 tests in 43.049s 151: 151: OK 166/246 Test #151: pyDistGeomHelpers ...................... Passed 43.85 sec test 174 Start 174: testRascalCluster 174: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES/testRascalCluster 174: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES 174: Test timeout computed to be: 7200 172: ......... 172: ---------------------------------------------------------------------- 172: Ran 9 tests in 2.099s 172: 172: OK 167/246 Test #172: pyMMPA ................................. Passed 2.60 sec test 175 Start 175: pyRascalMCES 175: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/Wrap/testRascalMCES.py" 175: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RascalMCES/Wrap 175: Test timeout computed to be: 7200 175: ..........[04:02:39] Too many matching bond pairs (1032) so can't continue. 175: .... 175: ---------------------------------------------------------------------- 175: Ran 14 tests in 3.979s 175: 175: OK 168/246 Test #175: pyRascalMCES ........................... Passed 4.67 sec test 176 Start 176: testSynthonSpaceSubstructureSearch 176: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceSubstructureSearch 176: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch 176: Test timeout computed to be: 7200 176: Randomness seeded to: 891498114 176: [04:02:46] Writing the enumerated file may take quite some time and result in a large file. 176: [04:02:50] Building the fingerprints may take some time. 166: MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds 166: MCS MatchStereo true : [#6]-[#6]-[#6] 3 atoms, 2 bonds 166: MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds 166: MCS MatchStereo true : [#6]-[#6]-[#6] 3 atoms, 2 bonds 166: MCS MatchStereo false : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds 166: MCS MatchStereo true : [#6]-[#6]-[#6]=[#6]-[#6]-[#6] 6 atoms, 5 bonds 166: TOTAL Time elapsed 23.69 seconds 169/246 Test #166: testFMCS ............................... Passed 23.74 sec test 177 Start 177: testSynthonSpaceFingerprintSearch 177: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceFingerprintSearch 177: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch 177: Test timeout computed to be: 7200 177: Randomness seeded to: 1481256504 177: [04:02:51] Building the fingerprints may take some time. 176: [04:02:51] 176: 176: **** 176: Invariant Violation 176: molzip: bond info not properly setup for bgn atom with label:1 176: Violation occurred on line 1093 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 176: Failed Expression: bond.a 176: ---------- 176: Stacktrace: 176: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 176: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 176: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 176: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 176: 4# RDKit::molzip(RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 176: 5# RDKit::SynthonSpaceSearch::SynthonSet::makeSynthonSearchMols() in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSynthonSpaceSearch.so.1 176: 6# RDKit::SynthonSpaceSearch::SynthonSpace::readStream(std::istream&, bool&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSynthonSpaceSearch.so.1 176: 7# RDKit::SynthonSpaceSearch::SynthonSpace::readTextFile(std::__cxx11::basic_string, std::allocator > const&, bool&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSynthonSpaceSearch.so.1 176: 8# 0x000000011459F81C in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceSubstructureSearch 176: 9# 0x000000011460B7D4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceSubstructureSearch 176: 10# 0x00000001145FE710 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceSubstructureSearch 176: 11# 0x00000001145FF464 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceSubstructureSearch 176: 12# 0x00000001145FFAB0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceSubstructureSearch 176: 13# 0x00000001145C6B08 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceSubstructureSearch 176: 14# 0x00000001145C7120 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceSubstructureSearch 176: 15# 0x000000011459E0AC in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceSubstructureSearch 176: 16# 0x00007FFFB9C27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 176: 17# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 176: ---------- 176: **** 176: 176: [04:02:51] Error:: in reaction amide-1 :: building molecule from synthons : 1-1 (c1cc[1*]ccc1C(=O)[1*]) and 2-1 ([1*]N1CCCC1) 176: molzip: bond info not properly setup for bgn atom with label:1 176: [04:02:51] Explicit valence for atom # 4 C, 5, is greater than permitted 176: [04:02:51] Error:: in reaction error-1 :: building molecule from synthons : 1-1 (C(=[2*])=CC=[1*]) and 2-1 (ClC([2*])=CN=[1*]) 176: Explicit valence for atom # 4 C, 5, is greater than permitted 176: [04:02:51] Complex queries can be slow. 176: [04:02:51] Complex queries can be slow. 176: [04:02:51] Complex queries can be slow. 177: [04:02:51] Building the fingerprints may take some time. 176: [04:02:51] Complex queries can be slow. 176: [04:02:52] Complex queries can be slow. 176: [04:02:52] Complex queries can be slow. 176: [04:02:52] Complex queries can be slow. 176: [04:02:53] Complex queries can be slow. 176: [04:02:53] Complex queries can be slow. 177: [04:02:53] Building the fingerprints may take some time. 176: [04:02:53] Complex queries can be slow. 176: [04:02:54] Complex queries can be slow. 173: Randomness seeded to: 3177906837 173: =============================================================================== 173: All tests passed (1588 assertions in 35 test cases) 173: 170/246 Test #173: testRascalMCES ......................... Passed 17.73 sec test 178 Start 178: testSynthonSpaceRascalSearch 178: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/testSynthonSpaceRascalSearch 178: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch 178: Test timeout computed to be: 7200 178: Randomness seeded to: 1732904260 178: =============================================================================== 178: All tests passed (15 assertions in 1 test case) 178: 171/246 Test #178: testSynthonSpaceRascalSearch ........... Passed 2.81 sec test 179 Start 179: pySynthonSpaceSearch 179: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/SynthonSpaceSearch/Wrap/testSynthonSpaceSearch.py" 179: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SynthonSpaceSearch/Wrap 179: Test timeout computed to be: 7200 177: [04:02:59] Building the fingerprints may take some time. 179: [04:02:59] Complex queries can be slow. 179: [04:03:00] Complex queries can be slow. 153: --------------------------------- 153: test getO3AForProbeConfs 153: 153: *********************************************************** 172/246 Test #153: testO3AAlign ........................... Passed 66.15 sec test 180 Start 180: testEnumerateStereoisomers 180: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers/testEnumerateStereoisomers 180: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers 180: Test timeout computed to be: 7200 179: .[04:03:01] Writing the enumerated file may take quite some time and result in a large file. 179: .[04:03:01] Complex queries can be slow. 179: [04:03:01] Complex queries can be slow. 174: Randomness seeded to: 61237737 174: /build/reproducible-path/rdkit-202503.6/Code/GraphMol/RascalMCES/data/chembl_1907596.smi 150: [04:03:04] UFFTYPER: Unrecognized atom type: S_6+6 (0) 150: [04:03:04] UFFTYPER: Warning: hybridization set to SP3 for atom 0 150: [04:03:04] UFFTYPER: Unrecognized charge state for atom: 0 176: [04:03:07] Complex queries can be slow. 176: [04:03:08] Complex queries can be slow. 176: [04:03:08] Complex queries can be slow. 176: [04:03:08] Complex queries can be slow. 176: [04:03:08] Complex queries can be slow. 176: [04:03:09] Complex queries can be slow. 176: [04:03:09] Complex queries can be slow. 176: [04:03:09] Complex queries can be slow. 176: [04:03:10] Complex queries can be slow. 176: [04:03:10] Complex queries can be slow. 176: [04:03:10] Complex queries can be slow. 176: [04:03:11] Complex queries can be slow. 176: [04:03:11] Complex queries can be slow. 176: [04:03:11] Complex queries can be slow. 176: [04:03:11] Complex queries can be slow. 176: [04:03:12] Complex queries can be slow. 176: [04:03:12] Complex queries can be slow. 176: [04:03:13] Complex queries can be slow. 176: [04:03:13] Complex queries can be slow. 176: =============================================================================== 176: All tests passed (138 assertions in 21 test cases) 176: 173/246 Test #176: testSynthonSpaceSubstructureSearch ..... Passed 30.23 sec test 181 Start 181: pyNewEnumerateStereoisomers 181: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/EnumerateStereoisomers/Wrap/testEnumerateStereoisomers.py" 181: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/EnumerateStereoisomers/Wrap 181: Test timeout computed to be: 7200 181: .. 181: ---------------------------------------------------------------------- 181: Ran 2 tests in 1.087s 181: 181: OK 174/246 Test #181: pyNewEnumerateStereoisomers ............ Passed 1.54 sec test 182 Start 182: testCIPLabeler 182: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler/testCIPLabeler 182: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler 182: Test timeout computed to be: 7200 182: Randomness seeded to: 2537262880 182: [04:03:15] non kekulizable aromatic bond being treated as bond order 1 182: [04:03:15] non kekulizable aromatic bond being treated as bond order 1 182: [04:03:15] non kekulizable aromatic bond being treated as bond order 1 182: [04:03:15] non kekulizable aromatic bond being treated as bond order 1 182: [04:03:15] non kekulizable aromatic bond being treated as bond order 1 182: [04:03:15] non kekulizable aromatic bond being treated as bond order 1 182: [04:03:15] Interrupted, cancelling CIP label calculation 182: [04:03:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 182: [04:03:16] Warning: conflicting stereochemistry - bond wedging contradiction - at atom 7 ignored 182: =============================================================================== 182: All tests passed (6595 assertions in 20 test cases) 182: 175/246 Test #182: testCIPLabeler ......................... Passed 0.77 sec test 183 Start 183: pyCIPLabelsWrapTest 183: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelWrapTest.py" 183: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler/Wrap 183: Test timeout computed to be: 7200 183: .... 183: ---------------------------------------------------------------------- 183: Ran 4 tests in 0.036s 183: 183: OK 176/246 Test #183: pyCIPLabelsWrapTest .................... Passed 0.70 sec test 184 Start 184: pyCIPLabelsValidation 184: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/CIPLabeler/Wrap/pyCIPLabelsValidation.py" 184: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/CIPLabeler/Wrap 184: Test timeout computed to be: 7200 184: VS001: PASSED 184: VS002: PASSED 184: VS003: PASSED 184: VS004: PASSED 184: VS005: PASSED 184: VS006: PASSED 184: VS007: PASSED 184: VS008: PASSED 184: VS009: PASSED 184: VS010: PASSED 184: VS011: PASSED 184: VS012: PASSED 184: VS013: PASSED 184: VS014: PASSED 184: VS015: PASSED 184: VS016: PASSED 184: VS017: PASSED 184: VS018: PASSED 184: VS019: PASSED 184: VS020: PASSED 184: VS021: PASSED 184: VS022: PASSED 184: VS023: PASSED 184: VS024: PASSED 184: VS025: PASSED 184: VS026: PASSED 184: VS027: PASSED 184: VS028: PASSED 184: VS029: PASSED 184: VS030: PASSED 184: VS031: PASSED 184: VS032: PASSED 184: VS033: PASSED 184: VS034: PASSED 184: VS035: PASSED 184: VS036: PASSED 184: VS037: PASSED 184: VS038: PASSED 184: VS039: PASSED 184: VS040: PASSED 184: VS041: PASSED 184: VS042: PASSED 184: VS043: PASSED 184: VS044: PASSED 184: VS045: PASSED 184: VS046: PASSED 184: VS047: PASSED 184: VS048: PASSED 184: VS049: PASSED 184: VS050: PASSED 184: VS051: PASSED 184: VS052: PASSED 184: VS053: PASSED 184: VS054: PASSED 184: VS055: PASSED 184: VS056: PASSED 184: VS057: PASSED 184: VS058: PASSED 184: VS059: PASSED 184: VS060: PASSED 184: VS061: PASSED 184: VS062: PASSED 184: VS063: PASSED 184: VS064: PASSED 184: VS065: PASSED 184: VS066: PASSED 184: VS067: PASSED 184: VS068: PASSED 184: VS069: PASSED 184: VS070: PASSED 184: VS071: PASSED 184: VS072: PASSED 184: VS073: PASSED 184: VS074: PASSED 184: VS075: PASSED 184: VS076: PASSED 184: VS077: PASSED 184: VS078: PASSED 184: VS079: PASSED 184: VS080: PASSED 184: VS081: PASSED 184: VS082: PASSED 184: VS083: PASSED 184: VS084: PASSED 184: VS085: PASSED 184: VS086: PASSED 184: VS087: PASSED 184: VS088: PASSED 184: VS089: PASSED 184: VS090: PASSED 184: VS091: PASSED 184: VS092: PASSED 184: VS093: PASSED 184: VS094: PASSED 184: VS095: PASSED 184: VS096: PASSED 184: VS097: PASSED 184: VS098: PASSED 184: VS099: PASSED 184: VS100: PASSED 184: VS101: PASSED 184: VS102: PASSED 184: VS103: PASSED 184: VS104: PASSED 184: VS105: PASSED 184: VS106: PASSED 184: VS107: PASSED 184: VS108: PASSED 184: VS109: PASSED 184: VS110: PASSED 184: VS111: PASSED 184: VS112: PASSED 184: VS113: PASSED 184: VS114: PASSED 184: VS115: PASSED 184: VS116: PASSED 184: VS117: PASSED 184: VS118: PASSED 184: VS119: PASSED 184: VS120: PASSED 184: VS121: PASSED 184: VS122: PASSED 184: VS123: PASSED 184: VS124: PASSED 184: VS125: PASSED 184: VS126: PASSED 184: VS127: PASSED 184: VS128: PASSED 184: VS129: PASSED 184: VS130: PASSED 184: VS131: PASSED 184: VS132: PASSED 184: VS133: PASSED 184: VS134: PASSED 184: VS135: PASSED 184: VS136: PASSED 184: VS137: PASSED 184: VS138: PASSED 184: VS139: PASSED 184: VS140: PASSED 184: VS141: PASSED 184: VS142: PASSED 184: VS143: PASSED 184: VS144: PASSED 184: VS145: PASSED 184: VS146: PASSED 184: VS147: PASSED 184: VS148: PASSED 184: VS149: PASSED 184: VS150: PASSED 184: VS151: PASSED 184: VS152: PASSED 184: VS153: PASSED 184: VS154: PASSED 184: VS155: PASSED 184: VS156: PASSED 184: VS157: PASSED 184: VS158: PASSED 184: VS159: PASSED 184: VS160: PASSED 184: VS161: PASSED 184: VS162: PASSED 184: VS163: PASSED 184: VS164: PASSED 184: VS165: PASSED 184: VS166: PASSED 184: VS167: PASSED 184: VS168: PASSED 184: VS169: PASSED 184: VS170: PASSED 184: VS171: PASSED 184: VS172: PASSED 184: VS173: PASSED 184: VS174: PASSED 184: VS175: PASSED 184: VS176: PASSED 184: VS177: PASSED 184: VS178: PASSED 184: VS179: PASSED 184: VS180: PASSED 184: VS181: PASSED 184: VS182: PASSED 184: VS183: PASSED 184: VS184: PASSED 184: VS185: PASSED 184: VS186: PASSED 184: VS187: PASSED 184: VS188: PASSED 184: VS189: PASSED 184: VS190: PASSED 184: VS191: PASSED 184: VS192: PASSED 184: VS193: PASSED 184: VS194: PASSED 184: VS195: PASSED 184: VS196: PASSED 184: VS197: PASSED 184: VS198: PASSED 184: VS199: PASSED 184: VS200: PASSED 184: VS201: PASSED 184: VS202: PASSED 184: VS203: PASSED 184: VS204: PASSED 184: VS205: PASSED 184: VS206: PASSED 184: VS207: PASSED 184: VS208: PASSED 184: VS209: PASSED 184: VS210: PASSED 184: VS211: PASSED 184: VS212: PASSED 184: VS213: PASSED 184: VS214: PASSED 184: VS215: PASSED 184: VS216: PASSED 184: VS217: PASSED 184: VS218: PASSED 184: VS219: PASSED 184: VS220: PASSED 184: VS221: PASSED 184: VS222: PASSED 184: VS223: PASSED 184: VS224: PASSED 184: VS225: PASSED 184: VS226: PASSED 184: VS227: PASSED 184: VS228: PASSED 184: VS229: PASSED 184: VS230: PASSED 184: VS231: PASSED 184: VS232: PASSED 184: VS233: PASSED 184: VS234: PASSED 184: VS235: PASSED 184: VS236: PASSED 184: VS237: PASSED 184: VS238: PASSED 184: VS239: PASSED 184: VS240: PASSED 184: VS241: PASSED 184: VS242: PASSED 184: VS243: PASSED 184: VS244: PASSED 184: VS245: PASSED 184: VS246: PASSED 184: VS247: PASSED 184: VS248: PASSED 184: VS249: PASSED 184: VS250: PASSED 184: VS251: PASSED 184: VS252: PASSED 184: VS253: PASSED 184: VS254: PASSED 184: VS255: PASSED 184: VS256: PASSED 184: VS257: PASSED 184: VS258: PASSED 184: VS259: PASSED 184: VS260: PASSED 184: VS261: PASSED 184: VS262: PASSED 184: VS263: PASSED 184: VS264: PASSED 184: VS265: PASSED 184: VS266: PASSED 184: VS267: PASSED 184: VS268: PASSED 184: VS269: PASSED 184: VS270: PASSED 184: VS271: PASSED 184: VS272: PASSED 184: VS273: PASSED 184: VS274: PASSED 184: VS275: PASSED 184: VS276: PASSED 184: VS277: PASSED 184: VS278: PASSED 184: VS279: PASSED 184: VS280: PASSED 184: VS281: PASSED 184: VS282: PASSED 184: VS283: PASSED 184: VS284: PASSED 184: VS285: PASSED 184: VS286: PASSED 184: VS287: PASSED 184: VS288: PASSED 184: VS289: PASSED 184: VS290: PASSED 184: VS291: PASSED 184: VS292: PASSED 184: VS293: PASSED 184: VS294: PASSED 184: VS295: PASSED 184: VS296: PASSED 184: VS297: PASSED 184: VS298: PASSED 184: VS299: PASSED 184: VS300: PASSED 184: Check finished: 0 molecules failed. 184: Failed: 177/246 Test #184: pyCIPLabelsValidation .................. Passed 10.79 sec test 185 Start 185: deprotectTest 185: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect/deprotectTest 185: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect 185: Test timeout computed to be: 7200 185: Randomness seeded to: 2522741435 185: =============================================================================== 185: All tests passed (111 assertions in 3 test cases) 185: 178/246 Test #185: deprotectTest .......................... Passed 0.08 sec test 186 Start 186: pyDeprotect 186: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Deprotect/Wrap/rough_test.py" 186: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Deprotect/Wrap 186: Test timeout computed to be: 7200 149: [04:03:27] done 186: ..... 186: ---------------------------------------------------------------------- 186: Ran 5 tests in 0.059s 186: 186: OK 186: Testing tert-butyldimethylsilyl 186: Testing methoxytrityl 186: Testing tetrahydropyranyl 186: Testing methoxymethyl_ether 186: Testing beta-Methoxyethoxymethyl_ether 186: Testing benzyl 186: Testing trimethylsilyl 186: Testing benzoyl 186: Testing pivaloyl 186: Testing triisopropylsilyl 186: Testing acetyl 186: Testing para-methoxybenzyl_ether 186: Testing triphenylmethyl 186: Testing phthaloyl 186: Testing trimethylsilylethoxymethyl 186: Testing para-methoxyphenyl 186: Testing tosyl 186: Testing tert-butyloxycarbonyl 186: Testing trifluoroacetyl 186: Testing benzoyl 186: Testing 9-fluorenylmethyloxycarbonyl 186: Testing benzylamine 186: Testing acetamide 186: Testing carbobenzyloxy 186: Testing Acetal/Ketal 186: Testing tert-butyldimethylsilyl 186: Testing methoxytrityl 186: Testing tetrahydropyranyl 186: Testing methoxymethyl_ether 186: Testing beta-Methoxyethoxymethyl_ether 186: Testing benzyl 186: Testing trimethylsilyl 186: Testing benzoyl 186: Testing pivaloyl 186: Testing triisopropylsilyl 186: Testing acetyl 186: Testing para-methoxybenzyl_ether 186: Testing triphenylmethyl 186: Testing phthaloyl 186: Testing trimethylsilylethoxymethyl 186: Testing para-methoxyphenyl 186: Testing tosyl 186: Testing tert-butyloxycarbonyl 186: Testing trifluoroacetyl 186: Testing benzoyl 186: Testing 9-fluorenylmethyloxycarbonyl 186: Testing benzylamine 186: Testing acetamide 186: Testing carbobenzyloxy 186: Testing Acetal/Ketal 179/246 Test #186: pyDeprotect ............................ Passed 0.55 sec test 187 Start 187: testReducedGraphs 187: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs/testReducedGraphs 187: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs 187: Test timeout computed to be: 7200 187: Size: 315 [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ] 187: 187: Size: 315 [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0.3, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ] 187: 187: Size: 315 [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.6, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.6, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ] 187: 187: Size: 315 [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.6, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1.3, 1.3, 0.6, 1, 0.6, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ] 187: 187: Size: 315 [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.6, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1.3, 1.3, 0.6, 1, 0.6, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ] 187: 187: Size: 315 [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ] 187: 187: Size: 315 [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ] 187: 187: Size: 315 [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ] 187: 187: Size: 315 [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.3, 1, 0.3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, ] 187: 180/246 Test #187: testReducedGraphs ...................... Passed 0.05 sec test 188 Start 188: pyReducedGraphs 188: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py" 188: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap 188: Test timeout computed to be: 7200 188: ..... 188: ---------------------------------------------------------------------- 188: Ran 5 tests in 0.028s 188: 188: OK 181/246 Test #188: pyReducedGraphs ........................ Passed 0.58 sec test 189 Start 189: trajectoryTest 189: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory/trajectoryTest 189: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Trajectory 189: Test timeout computed to be: 7200 182/246 Test #189: trajectoryTest ......................... Passed 0.66 sec test 190 Start 190: substructLibraryTest 190: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/substructLibraryTest 190: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary 190: Test timeout computed to be: 7200 190: [04:03:29] ------------------------------------- 190: [04:03:29] Test1 190: [04:03:30] done 190: [04:03:30] ------------------------------------- 190: [04:03:30] Test2 190: [04:03:30] done 190: [04:03:30] ------------------------------------- 190: [04:03:30] Test3 (stereo options) 190: [04:03:30] Done (stereo options) 190: [04:03:30] ------------------------------------- 190: [04:03:30] Test4 (trusted smiles) 190: [04:03:30] Done (trusted smiles) 190: [04:03:30] ------------------------------------- 190: [04:03:30] Testing C++ docs 190: [04:03:30] Done (C++ doc tests) 190: [04:03:30] ------------------------------------- 190: [04:03:30] Testing C++ ring query: PatternHolder 190: [04:03:30] Done (C++ ring query tests) 190: [04:03:30] ------------------------------------- 190: [04:03:30] Testing C++ ring query: TautomerPatternHolder 190: [04:03:30] Done (C++ ring query tests) 190: [04:03:30] ------------------------------------- 190: [04:03:30] Add Patterns 177: =============================================================================== 177: All tests passed (53 assertions in 4 test cases) 177: 183/246 Test #177: testSynthonSpaceFingerprintSearch ...... Passed 40.17 sec test 191 Start 191: substructLibraryCatchTest 191: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/substructLibraryCatchTest 191: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary 191: Test timeout computed to be: 7200 191: Randomness seeded to: 676884424 191: =============================================================================== 191: All tests passed (171 assertions in 5 test cases) 191: 184/246 Test #191: substructLibraryCatchTest .............. Passed 0.32 sec test 192 Start 192: pySubstructLibrary 192: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/SubstructLibrary/Wrap/rough_test.py" 192: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap 192: Test timeout computed to be: 7200 190: [04:03:32] ------------------------------------- 190: [04:03:32] testing PatternHolder 190: [04:03:32] ------------------------------------- 190: [04:03:32] testing TautomerPatternHolder 190: [04:03:32] ------------------------------------- 190: [04:03:32] testSegFaultInHolder 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf[04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] SMILES Parse Error: syntax error while parsing: dsafsdf 190: [04:03:32] SMILES Parse Error: check for mistakes around position 1: 190: [04:03:32] dsafsdf 190: [04:03:32] ^ 190: [04:03:32] SMILES Parse Error: Failed parsing SMILES 'dsafsdf' for input: 'dsafsdf' 190: [04:03:32] ------------------------------------- 190: [04:03:32] Results do not depend on numThreads 149: [04:03:27] --------------------------------- 149: [04:03:27] test github issue 256: handling of zero-atom molecules 149: 149: [04:03:27] --------------------------------- 149: [04:03:27] test embedder callback function 149: [04:03:27] --------------------------------- 149: [04:03:27] test multi-threaded multi-conf embedding 149: 149: [04:03:36] --------------------------------- 149: [04:03:36] test github issue 563: Incorrect ring stereochemistry after embedding 149: 149: CNC[C@H]1CC[C@H](C[NH3+])CC1 190: [04:03:36] ------------------------------------- 190: [04:03:36] Results do not depend on numThreads (all same) 190: [04:03:36] ------------------------------------- 190: [04:03:36] testTautomerQueries 190: [04:03:36] Pattern fingerprints for tautomersearch aren't tautomer fingerprints, ignoring... 190: [04:03:36] ------------------------------------- 190: [04:03:36] github3881 recursive smarts with rings 185/246 Test #190: substructLibraryTest ................... Passed 7.25 sec test 193 Start 193: testRGroupDecomp 193: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/testRGroupDecomp 193: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition 193: Test timeout computed to be: 7200 193: [04:03:37] Non terminal R group defined. To allow set allowNonTerminalRGroups in RGroupDecompositionParameters 193: [04:03:37] WARNING: not removing hydrogen atom with dummy atom neighbors 192: ......[04:03:37] 192: 192: **** 192: Pre-condition Violation 192: RingInfo not initialized 192: Violation occurred on line 52 in file ./Code/GraphMol/RingInfo.cpp 192: Failed Expression: df_init 192: ---------- 192: Stacktrace: 192: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 192: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 192: 2# RDKit::RingInfo::numAtomRings(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 192: 3# 0x00007FFF95FA6050 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSmilesParse.so.1 192: 4# 0x00007FFF95FA5C58 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSmilesParse.so.1 192: 5# RDKit::AtomRingQuery::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSmilesParse.so.1 192: 6# Queries::AndQuery::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 192: 7# RDKit::QueryAtom::Match(RDKit::Atom const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 192: 8# RDKit::atomCompat(RDKit::Atom const*, RDKit::Atom const*, RDKit::SubstructMatchParameters const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 9# boost::detail::VF2SubState const, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor>::IsFeasiblePair(unsigned int, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 10# bool boost::detail::VF2SubState const, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor>::MatchAll, std::allocator > >, std::allocator, std::allocator > > > > >(unsigned int*, unsigned int*, std::vector, std::allocator > >, std::allocator, std::allocator > > > >&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 11# bool boost::vf2_all, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >(boost::adjacency_list const&, boost::adjacency_list const&, RDKit::detail::AtomLabelFunctor&, RDKit::detail::BondLabelFunctor&, RDKit::MolMatchFinalCheckFunctor&, std::vector, std::allocator > >, std::allocator, std::allocator > > > >&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 12# RDKit::SubstructMatch(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::SubstructMatchParameters const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 13# bool RDKit::SubstructMatch(RDKit::ROMol const&, RDKit::ROMol const&, std::vector, std::allocator > >&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 14# bool RDKit::HasSubstructMatch(RDKit::ROMol const&, RDKit::ROMol const&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 15# 0x00007FFF9627CE94 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 16# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 17# 0x00007FFF986CAD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 19# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 192: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 21# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 192: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 23# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 192: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 27# 0x00007FFF961A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 29# 0x00007FFF961A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 31# 0x00007FFF961A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 32# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 33# 0x00007FFF961A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 34# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 35# 0x00007FFF961A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 36# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 37# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 192: 38# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 39# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 192: 40# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 41# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 192: 42# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 43# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 192: 44# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 45# 0x00007FFF986C6264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 46# _PyObject_MakeTpCall in /usr/bin/python3 192: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 48# 0x0000000010162EE0 in /usr/bin/python3 192: 49# 0x00000000101B9704 in /usr/bin/python3 192: 50# 0x0000000010181FB4 in /usr/bin/python3 192: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 52# 0x000000001030064C in /usr/bin/python3 192: 53# 0x0000000010258FE4 in /usr/bin/python3 192: 54# _PyObject_MakeTpCall in /usr/bin/python3 192: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 56# 0x0000000010162EE0 in /usr/bin/python3 192: 57# 0x00000000101B9704 in /usr/bin/python3 192: 58# 0x0000000010181FB4 in /usr/bin/python3 192: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 60# 0x000000001030064C in /usr/bin/python3 192: 61# 0x0000000010258FE4 in /usr/bin/python3 192: 62# _PyObject_MakeTpCall in /usr/bin/python3 192: 63# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 64# 0x0000000010162EE0 in /usr/bin/python3 192: 65# 0x00000000101B9704 in /usr/bin/python3 192: 66# 0x0000000010181FB4 in /usr/bin/python3 192: 67# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 68# 0x000000001030064C in /usr/bin/python3 192: 69# 0x0000000010258FE4 in /usr/bin/python3 192: 70# _PyObject_MakeTpCall in /usr/bin/python3 192: 71# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 72# 0x000000001016F888 in /usr/bin/python3 192: 73# _PyObject_MakeTpCall in /usr/bin/python3 192: 74# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 75# PyEval_EvalCode in /usr/bin/python3 192: 76# 0x000000001032E06C in /usr/bin/python3 192: 77# 0x000000001032844C in /usr/bin/python3 192: 78# 0x00000000103689CC in /usr/bin/python3 192: 79# 0x00000000103680D0 in /usr/bin/python3 192: 80# 0x0000000010367DA4 in /usr/bin/python3 192: 81# Py_RunMain in /usr/bin/python3 192: 82# 0x00000000102E95E8 in /usr/bin/python3 192: 83# Py_BytesMain in /usr/bin/python3 192: 84# 0x00007FFF99027224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 192: 85# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 192: ---------- 192: **** 192: 192: [04:03:37] 192: 192: **** 149: [04:03:37] --------------------------------- 149: [04:03:37] test github issue 568: Incorrect stereochemistry after embedding 149: 149: C1=NC[C@]2(CN3CC[C@@H]2C3)O1 192: Pre-condition Violation 192: RingInfo not initialized 192: Violation occurred on line 129 in file ./Code/GraphMol/RingInfo.cpp 192: Failed Expression: df_init 192: ---------- 192: Stacktrace: 192: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 192: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 192: 2# RDKit::RingInfo::numBondRings(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 192: 3# 0x00007FFF95CF1D00 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 192: 4# Queries::EqualityQuery::Match(RDKit::Bond const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 192: 5# RDKit::QueryBond::Match(RDKit::Bond const*) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 192: 6# RDKit::bondCompat(RDKit::Bond const*, RDKit::Bond const*, RDKit::SubstructMatchParameters const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 7# boost::detail::VF2SubState const, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor>::IsFeasiblePair(unsigned int, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 8# bool boost::detail::VF2SubState const, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor>::MatchAll, std::allocator > >, std::allocator, std::allocator > > > > >(unsigned int*, unsigned int*, std::vector, std::allocator > >, std::allocator, std::allocator > > > >&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 9# bool boost::detail::VF2SubState const, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor>::MatchAll, std::allocator > >, std::allocator, std::allocator > > > > >(unsigned int*, unsigned int*, std::vector, std::allocator > >, std::allocator, std::allocator > > > >&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 10# bool boost::vf2_all, RDKit::detail::AtomLabelFunctor, RDKit::detail::BondLabelFunctor, RDKit::MolMatchFinalCheckFunctor, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >(boost::adjacency_list const&, boost::adjacency_list const&, RDKit::detail::AtomLabelFunctor&, RDKit::detail::BondLabelFunctor&, RDKit::MolMatchFinalCheckFunctor&, std::vector, std::allocator > >, std::allocator, std::allocator > > > >&, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 11# RDKit::SubstructMatch(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::SubstructMatchParameters const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSubstructMatch.so.1 192: 12# bool RDKit::SubstructMatch(RDKit::ROMol const&, RDKit::ROMol const&, std::vector, std::allocator > >&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 13# bool RDKit::HasSubstructMatch(RDKit::ROMol const&, RDKit::ROMol const&, bool, bool, bool) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 14# 0x00007FFF9627CE94 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 15# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 16# 0x00007FFF986CAD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 17# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 18# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 192: 19# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 20# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 192: 21# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 22# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 192: 23# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 24# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 25# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 26# 0x00007FFF961A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 27# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 28# 0x00007FFF961A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 30# 0x00007FFF961A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 32# 0x00007FFF961A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 33# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 34# 0x00007FFF961A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 192: 35# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 36# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 192: 37# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 38# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 192: 39# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 40# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 192: 41# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 42# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 192: 43# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 44# 0x00007FFF986C6264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 192: 45# _PyObject_MakeTpCall in /usr/bin/python3 192: 46# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 47# 0x0000000010162EE0 in /usr/bin/python3 192: 48# 0x00000000101B9704 in /usr/bin/python3 192: 49# 0x0000000010181FB4 in /usr/bin/python3 192: 50# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 51# 0x000000001030064C in /usr/bin/python3 192: 52# 0x0000000010258FE4 in /usr/bin/python3 192: 53# _PyObject_MakeTpCall in /usr/bin/python3 192: 54# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 55# 0x0000000010162EE0 in /usr/bin/python3 192: 56# 0x00000000101B9704 in /usr/bin/python3 192: 57# 0x0000000010181FB4 in /usr/bin/python3 192: 58# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 59# 0x000000001030064C in /usr/bin/python3 192: 60# 0x0000000010258FE4 in /usr/bin/python3 192: 61# _PyObject_MakeTpCall in /usr/bin/python3 192: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 63# 0x0000000010162EE0 in /usr/bin/python3 192: 64# 0x00000000101B9704 in /usr/bin/python3 192: 65# 0x0000000010181FB4 in /usr/bin/python3 192: 66# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 67# 0x000000001030064C in /usr/bin/python3 192: 68# 0x0000000010258FE4 in /usr/bin/python3 192: 69# _PyObject_MakeTpCall in /usr/bin/python3 192: 70# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 71# 0x000000001016F888 in /usr/bin/python3 192: 72# _PyObject_MakeTpCall in /usr/bin/python3 192: 73# _PyEval_EvalFrameDefault in /usr/bin/python3 192: 74# PyEval_EvalCode in /usr/bin/python3 192: 75# 0x000000001032E06C in /usr/bin/python3 192: 76# 0x000000001032844C in /usr/bin/python3 192: 77# 0x00000000103689CC in /usr/bin/python3 192: 78# 0x00000000103680D0 in /usr/bin/python3 192: 79# 0x0000000010367DA4 in /usr/bin/python3 192: 80# Py_RunMain in /usr/bin/python3 192: 81# 0x00000000102E95E8 in /usr/bin/python3 192: 82# Py_BytesMain in /usr/bin/python3 192: 83# 0x00007FFF99027224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 192: 84# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 192: ---------- 192: **** 192: 149: O=C(O)[C@@H]1[C@H](C(=O)O)[C@H]2CC[C@@H]1O2 149: O=C(CCc1ccccc1)OC[C@H]1C[C@@H]2O[C@H]1[C@H]1C(=O)OC(=O)[C@H]12 193: iterative 149: Cn1cc(C2=NC[C@]3(CN4CC[C@@H]3C4)O2)c2ccccc21 193: bulk 149: Nc1ncnc2c1ncn2[C@@H]1C=C(CO)[C@@H](O)[C@H]1O 149: CO[C@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O 149: CO[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O 149: CCS[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O 149: CCCCC[C@H](O)/C=C/[C@@]1(F)[C@H](O)C[C@H](O)[C@@H]1C/C=C\CCCC(=O)OC 193: bulk, no symmetry 193: [04:03:41] Relabelling existing label 193: Best mapping 192: ............. 192: ---------------------------------------------------------------------- 192: Ran 19 tests in 9.606s 192: 192: OK 192: Testing atom rings 192: testing bond rings 192: searching atom rings 192: searching bond rings 192: done 186/246 Test #193: testRGroupDecomp ....................... Passed 4.78 sec test 194 Start 194: testRGroupDecompInternals 194: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/testRGroupDecompInternals 194: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition 194: Test timeout computed to be: 7200 187/246 Test #192: pySubstructLibrary ..................... Passed 10.15 sec test 195 Start 195: rgroupCatchTests 195: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/rgroupCatchTests 195: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition 195: Test timeout computed to be: 7200 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 194: [04:03:41] WARNING: not removing hydrogen atom with dummy atom neighbors 188/246 Test #194: testRGroupDecompInternals .............. Passed 0.05 sec test 196 Start 196: pyRGroupDecomposition 196: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py" 196: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap 196: Test timeout computed to be: 7200 149: CCCCC[C@@H](O)/C=C/[C@@]1(F)[C@H](C/C=C\CCCC(=O)OC)[C@H](O)C[C@@H]1O 195: Randomness seeded to: 1146167897 195: =============================================================================== 195: All tests passed (1479 assertions in 14 test cases) 195: 189/246 Test #195: rgroupCatchTests ....................... Passed 0.38 sec test 197 Start 197: determineBondsCatchTest 197: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds/determineBondsCatchTest 197: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds 197: Test timeout computed to be: 7200 149: CNC(=O)Oc1cccc2c1OC[C@@H]1CCN(C)[C@H]21 197: Randomness seeded to: 2362643150 197: [04:03:43] Interrupted, cancelling determine Bond Orders 197: =============================================================================== 197: All tests passed (5184 assertions in 10 test cases) 197: 190/246 Test #197: determineBondsCatchTest ................ Passed 1.24 sec test 198 Start 198: pyDetermineBonds 198: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/DetermineBonds/Wrap/testDetermineBonds.py" 198: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/DetermineBonds/Wrap 198: Test timeout computed to be: 7200 149: CNC(=O)Oc1ccc2c(c1)[C@@H]1[C@@H](CCN1C)CO2 149: CN1CC[C@H]2COc3c(O)cccc3[C@H]21 149: CC(=O)C[C@@]12CCC[C@H]1[C@@H]1CCC3=CC(=O)CC[C@@H]3[C@H]1CC2 196: .................... 196: ---------------------------------------------------------------------- 196: Ran 20 tests in 1.958s 196: 196: OK 198: .s... 198: ---------------------------------------------------------------------- 198: Ran 5 tests in 0.348s 198: 198: OK (skipped=1) 191/246 Test #196: pyRGroupDecomposition .................. Passed 2.24 sec test 199 Start 199: molInterchangeTest1 199: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange/molInterchangeTest1 199: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange 199: Test timeout computed to be: 7200 199: [04:03:43] test1: basics 199: [04:03:44] done 199: [04:03:44] test2: basic writing 199: {"rdkitjson":{"version":12},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"mol1 name","atoms":[{"impHs":3},{"impHs":3}],"bonds":[{"atoms":[0,1]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2025.03.6","cipRanks":[0,0]}]}]} 199: {"rdkitjson":{"version":12},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"test mol","atoms":[{"z":9},{"stereo":"cw"},{"z":17},{"z":8,"impHs":1},{"impHs":3}],"bonds":[{"atoms":[0,1]},{"atoms":[1,2]},{"atoms":[1,3]},{"atoms":[1,4]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2025.03.6","cipRanks":[3,1,4,2,0],"cipCodes":[[1,"S"]]}]}]} 199: {"rdkitjson":{"version":12},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"test mol","atoms":[{"impHs":1},{"impHs":1},{"impHs":1},{"impHs":1},{"impHs":1},{"impHs":1}],"bonds":[{"bo":2,"atoms":[0,1]},{"atoms":[1,2]},{"bo":2,"atoms":[2,3]},{"atoms":[3,4]},{"bo":2,"atoms":[4,5]},{"atoms":[5,0]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2025.03.6","aromaticAtoms":[0,1,2,3,4,5],"aromaticBonds":[0,1,2,3,4,5],"cipRanks":[0,0,0,0,0,0],"atomRings":[[0,5,4,3,2,1]]}]}]} 199: {"rdkitjson":{"version":12},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"test mol","atoms":[{"impHs":3},{"impHs":2},{},{},{"z":7,"impHs":2},{"impHs":1},{},{"impHs":3},{"z":7},{"impHs":1}],"bonds":[{"atoms":[0,1]},{"atoms":[1,2]},{"bo":2,"atoms":[2,3]},{"atoms":[3,4]},{"atoms":[3,5]},{"bo":2,"atoms":[5,6]},{"atoms":[6,7]},{"atoms":[6,8]},{"bo":2,"atoms":[8,9]},{"atoms":[9,2]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2025.03.6","aromaticAtoms":[2,3,5,6,8,9],"aromaticBonds":[2,4,5,7,8,9],"cipRanks":[0,2,4,5,8,3,7,1,9,6],"atomRings":[[2,9,8,6,5,3]]}]}]} 199: [04:03:44] done 199: [04:03:44] test3: writing conformers 199: {"rdkitjson":{"version":12},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"example 2","atoms":[{"z":8},{"stereo":"cw"},{"z":17,"isotope":35},{"z":9},{"z":1},{"z":1}],"bonds":[{"atoms":[0,1]},{"atoms":[1,2]},{"atoms":[1,3]},{"atoms":[0,4]},{"atoms":[1,5]}],"conformers":[{"dim":2,"coords":[[-1.1988,-0.0452],[-0.3332,0.4556],[0.166,1.322],[0.5332,-0.0438],[-2.0652,0.4542],[-0.834,1.3212]]},{"dim":3,"coords":[[0.9554,-0.3743,-0.4679],[-0.3616,-0.1311,-0.0795],[-0.5097,1.6256,0.1706],[-0.5779,-0.792,1.1042],[1.5277,0.1064,0.1628],[-1.0339,-0.4346,-0.8902]]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2025.03.6","cipCodes":[[1,"S"]]},{"name":"partialCharges","generator":"RDKit","formatVersion":10,"generatorVersion":"2025.03.6","values":[-0.352,0.273,-0.055,-0.198,0.215,0.117]}]}]} 199: [04:03:44] done 199: [04:03:44] test4: writing properties 199: {"rdkitjson":{"version":12},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"atoms":[{"impHs":3},{"impHs":3}],"bonds":[{"atoms":[0,1]}],"properties":{"foo_string":"bar","foo_int":1,"foo_double":1.2},"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2025.03.6","cipRanks":[0,0]}]}]} 199: [04:03:44] done 199: [04:03:44] test5: writing partial charges 199: {"rdkitjson":{"version":12},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"atoms":[{"impHs":3},{"z":8,"impHs":1}],"bonds":[{"atoms":[0,1]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2025.03.6","cipRanks":[0,1]},{"name":"partialCharges","generator":"RDKit","formatVersion":10,"generatorVersion":"2025.03.6","values":[0.5,-0.5]}]}]} 199: [04:03:44] testing parse options 199: [04:03:44] done 199: [04:03:44] testing github #2046: CIPRank values from JSONDataToMols are not unsigned 199: {"rdkitjson":{"version":12},"defaults":{"atom":{"z":6,"impHs":0,"chg":0,"nRad":0,"isotope":0,"stereo":"unspecified"},"bond":{"bo":1,"stereo":"unspecified"}},"molecules":[{"name":"test mol","atoms":[{"impHs":2},{"impHs":2},{"impHs":2},{"z":8},{"impHs":1,"stereo":"cw"},{"z":9}],"bonds":[{"atoms":[0,1]},{"atoms":[1,2]},{"atoms":[2,3]},{"atoms":[3,4]},{"atoms":[4,5]},{"atoms":[4,0]}],"extensions":[{"name":"rdkitRepresentation","formatVersion":2,"toolkitVersion":"2025.03.6","cipRanks":[1,0,2,4,3,5],"cipCodes":[[4,"S"]],"atomRings":[[0,1,2,3,4]]}]}]} 199: [04:03:44] done 199: [04:03:44] testing 'either' stereochemistry 199: [04:03:44] done 192/246 Test #199: molInterchangeTest1 .................... Passed 0.05 sec test 200 Start 200: molInterchangeCatchTest 200: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange/molInterchangeCatchTest 200: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange 200: Test timeout computed to be: 7200 193/246 Test #198: pyDetermineBonds ....................... Passed 0.73 sec test 201 Start 201: pyMolInterchange 201: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInterchange/Wrap/testMolInterchange.py" 201: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInterchange/Wrap 201: Test timeout computed to be: 7200 200: Randomness seeded to: 2804394366 200: [04:03:44] unrecognized bond type 12 set to zero while writing 200: [04:03:44] unrecognized bond type 0 set to zero while writing 200: =============================================================================== 200: All tests passed (148 assertions in 8 test cases) 200: 194/246 Test #200: molInterchangeCatchTest ................ Passed 0.06 sec test 202 Start 202: testSLNParse 202: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse/testSLNParse 202: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse 202: Test timeout computed to be: 7200 202: Atoms: 202: 0 6 C chg: 1 deg: 5 exp: N/A imp: 0 hyb: 202: 1 1 H chg: 0 deg: 1 exp: N/A imp: N/A hyb: 202: 2 1 H chg: 0 deg: 1 exp: N/A imp: N/A hyb: 202: 3 1 H chg: 0 deg: 1 exp: N/A imp: N/A hyb: 202: 4 1 H chg: 0 deg: 1 exp: N/A imp: N/A hyb: 202: 5 1 H chg: 0 deg: 1 exp: N/A imp: N/A hyb: 202: Bonds: 202: 0 0->1 order: 1 202: 1 0->2 order: 1 202: 2 0->3 order: 1 202: 3 0->4 order: 1 202: 4 0->5 order: 1 202: [04:03:44] SLN Parse Error: syntax error while parsing: CH4[I=13] 202: [04:03:44] Failed parsing SLN 'CH4[I=13]' 202: [04:03:44] SLN Parser error: Atom ID 1 appears *after* its ring closure. 202: [04:03:44] SLN Parser error: Ring closure 1 does not have a corresponding opener. 202: [04:03:44] SLN Parse Error: syntax error while parsing: CH2(C@1H2)CH2(CH2CH2C[1]H2) 202: [04:03:44] Failed parsing SLN 'CH2(C@1H2)CH2(CH2CH2C[1]H2)' 202: [04:03:44] SLN Parse Error: syntax error while parsing: CH2(CH2[1])CH2(CH2CH2CH2@1) 202: [04:03:44] Failed parsing SLN 'CH2(CH2[1])CH2(CH2CH2CH2@1)' 202: [04:03:44] SLN Parse Error: syntax error while parsing: CH4 fff 202: [04:03:44] Failed parsing SLN 'CH4 fff' 202: [04:03:44] SLN Parse Error: syntax error while parsing: C[charge=+1] foo 202: [04:03:44] Failed parsing SLN 'C[charge=+1] foo' 202: [04:03:44] Query property 'is' ignored on non-query atom 202: [04:03:44] Query property 'is' ignored on non-query atom 195/246 Test #202: testSLNParse ........................... Passed 0.05 sec test 203 Start 203: pySLNParse 203: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/SLNParse/Wrap/testSLN.py" 203: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/SLNParse/Wrap 203: Test timeout computed to be: 7200 180: Randomness seeded to: 3643765286 180: =============================================================================== 180: All tests passed (90 assertions in 16 test cases) 180: 196/246 Test #180: testEnumerateStereoisomers ............. Passed 42.86 sec test 204 Start 204: pyGraphMolWrap 204: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/rough_test.py" 204: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap 204: Test timeout computed to be: 7200 201: .. 201: ---------------------------------------------------------------------- 201: Ran 2 tests in 0.007s 201: 201: OK 197/246 Test #201: pyMolInterchange ....................... Passed 0.31 sec test 205 Start 205: pyTestConformerWrap 205: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/testConformer.py" 205: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap 205: Test timeout computed to be: 7200 203: .. 203: ---------------------------------------------------------------------- 203: Ran 2 tests in 0.008s 203: 203: OK 198/246 Test #203: pySLNParse ............................. Passed 0.33 sec test 206 Start 206: pyTestTrajectory 206: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/testTrajectory.py" 206: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap 206: Test timeout computed to be: 7200 205: ...... 205: ---------------------------------------------------------------------- 205: Ran 6 tests in 0.021s 205: 205: OK 206: [04:03:44] 206: 206: **** 206: Pre-condition Violation 206: from must be < size() 206: Violation occurred on line 91 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: from < static_cast(size()) 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::Trajectory::addConformersToMol(RDKit::ROMol&, int, int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 5# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 15# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 17# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 19# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 21# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 23# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 27# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 29# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 31# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 32# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 33# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# _PyObject_MakeTpCall in /usr/bin/python3 206: 35# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 36# 0x0000000010162EE0 in /usr/bin/python3 206: 37# 0x00000000101B9704 in /usr/bin/python3 206: 38# 0x0000000010181FB4 in /usr/bin/python3 206: 39# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 40# 0x000000001030064C in /usr/bin/python3 206: 41# 0x0000000010258FE4 in /usr/bin/python3 206: 42# _PyObject_MakeTpCall in /usr/bin/python3 206: 43# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 44# 0x0000000010162EE0 in /usr/bin/python3 206: 45# 0x00000000101B9704 in /usr/bin/python3 206: 46# 0x0000000010181FB4 in /usr/bin/python3 206: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 48# 0x000000001030064C in /usr/bin/python3 206: 49# 0x0000000010258FE4 in /usr/bin/python3 206: 50# _PyObject_MakeTpCall in /usr/bin/python3 206: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 52# 0x0000000010162EE0 in /usr/bin/python3 206: 53# 0x00000000101B9704 in /usr/bin/python3 206: 54# 0x0000000010181FB4 in /usr/bin/python3 206: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 56# 0x000000001030064C in /usr/bin/python3 206: 57# 0x0000000010258FE4 in /usr/bin/python3 206: 58# _PyObject_MakeTpCall in /usr/bin/python3 206: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 60# 0x000000001016F888 in /usr/bin/python3 206: 61# _PyObject_MakeTpCall in /usr/bin/python3 206: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 63# PyEval_EvalCode in /usr/bin/python3 206: 64# 0x000000001032E06C in /usr/bin/python3 206: 65# 0x000000001032844C in /usr/bin/python3 206: 66# 0x00000000103689CC in /usr/bin/python3 206: 67# 0x00000000103680D0 in /usr/bin/python3 206: 68# 0x0000000010367DA4 in /usr/bin/python3 206: 69# Py_RunMain in /usr/bin/python3 206: 70# 0x00000000102E95E8 in /usr/bin/python3 206: 71# Py_BytesMain in /usr/bin/python3 206: 72# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 73# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: .[04:03:44] 206: 206: **** 206: Pre-condition Violation 206: from must be < size() 206: Violation occurred on line 91 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: from < static_cast(size()) 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::Trajectory::addConformersToMol(RDKit::ROMol&, int, int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 5# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 15# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 17# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 19# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 21# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 23# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 27# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 29# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 31# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 32# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 33# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# _PyObject_MakeTpCall in /usr/bin/python3 206: 35# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 36# 0x0000000010162EE0 in /usr/bin/python3 206: 37# 0x00000000101B9704 in /usr/bin/python3 206: 38# 0x0000000010181FB4 in /usr/bin/python3 206: 39# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 40# 0x000000001030064C in /usr/bin/python3 206: 41# 0x0000000010258FE4 in /usr/bin/python3 206: 42# _PyObject_MakeTpCall in /usr/bin/python3 206: 43# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 44# 0x0000000010162EE0 in /usr/bin/python3 206: 45# 0x00000000101B9704 in /usr/bin/python3 206: 46# 0x0000000010181FB4 in /usr/bin/python3 206: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 48# 0x000000001030064C in /usr/bin/python3 206: 49# 0x0000000010258FE4 in /usr/bin/python3 206: 50# _PyObject_MakeTpCall in /usr/bin/python3 206: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 52# 0x0000000010162EE0 in /usr/bin/python3 206: 53# 0x00000000101B9704 in /usr/bin/python3 206: 54# 0x0000000010181FB4 in /usr/bin/python3 206: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 56# 0x000000001030064C in /usr/bin/python3 206: 57# 0x0000000010258FE4 in /usr/bin/python3 206: 58# _PyObject_MakeTpCall in /usr/bin/python3 206: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 60# 0x000000001016F888 in /usr/bin/python3 206: 61# _PyObject_MakeTpCall in /usr/bin/python3 206: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 63# PyEval_EvalCode in /usr/bin/python3 206: 64# 0x000000001032E06C in /usr/bin/python3 206: 65# 0x000000001032844C in /usr/bin/python3 206: 66# 0x00000000103689CC in /usr/bin/python3 206: 67# 0x00000000103680D0 in /usr/bin/python3 206: 68# 0x0000000010367DA4 in /usr/bin/python3 206: 69# Py_RunMain in /usr/bin/python3 206: 70# 0x00000000102E95E8 in /usr/bin/python3 206: 71# Py_BytesMain in /usr/bin/python3 206: 72# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 73# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 199/246 Test #205: pyTestConformerWrap .................... Passed 0.32 sec test 207 Start 207: pyTestSGroups 207: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/testSGroups.py" 207: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap 207: Test timeout computed to be: 7200 204: ..............[04:03:44] SMARTS Parse Error: syntax error while parsing: fiib 204: [04:03:44] SMARTS Parse Error: check for mistakes around position 1: 204: [04:03:44] fiib 204: [04:03:44] ^ 204: [04:03:44] SMARTS Parse Error: Failed parsing SMARTS 'fiib' for input: 'fiib' 204: ....[04:03:44] ERROR: Problems encountered parsing data fields 204: [04:03:44] ERROR: moving to the beginning of the next molecule 204: [04:03:44] ERROR: Problems encountered parsing data fields 204: [04:03:44] ERROR: moving to the beginning of the next molecule 204: [04:03:44] Spurious data before the first property will be ignored 204: [04:03:44] Property will be truncated after the first blank line 204: [04:03:44] Property will be truncated after the first blank line 204: [04:03:44] Property will be truncated after the first blank line 204: [04:03:44] ERROR: Problems encountered parsing data fields 204: [04:03:44] ERROR: moving to the beginning of the next molecule 204: [04:03:44] ERROR: Problems encountered parsing data fields 204: [04:03:44] ERROR: moving to the beginning of the next molecule 204: [04:03:44] Spurious data before the first property will be ignored 204: [04:03:44] Property will be truncated after the first blank line 204: [04:03:44] Property will be truncated after the first blank line 204: [04:03:44] Property will be truncated after the first blank line 204: [04:03:44] ERROR: Problems encountered parsing data fields 204: [04:03:44] ERROR: moving to the beginning of the next molecule 204: [04:03:44] Property will be truncated after the first blank line 204: [04:03:44] ERROR: Problems encountered parsing data fields 204: [04:03:44] ERROR: moving to the beginning of the next molecule 204: [04:03:44] Property will be truncated after the first blank line 204: .[04:03:44] SMILES Parse Error: syntax error while parsing: fail 204: [04:03:44] SMILES Parse Error: check for mistakes around position 1: 204: [04:03:44] fail 204: [04:03:44] ^ 204: [04:03:44] SMILES Parse Error: Failed parsing SMILES 'fail' for input: 'fail' 204: [04:03:44] ERROR: Smiles parse error on line 2 204: [04:03:44] ERROR: Cannot create molecule from : 'fail' 204: >>> This may result in an infinite loop. It should finish almost instantly 204: <<< OK, it finished. 204: ............[04:03:44] Explicit valence for atom # 1 C, 5, is greater than permitted 206: .[04:03:44] 206: 206: **** 206: Range Error 206: snapshotNum 206: Violation occurred on line 71 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: 0 < 0 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::Trajectory::getSnapshot(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# RDKit::getSnapshot_wrap(RDKit::Trajectory*, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::caller_py_function_impl, boost::mpl::vector3 > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 5# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 8# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 9# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 10# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 11# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 12# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 13# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 14# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 15# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 16# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 17# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 18# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 19# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 20# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 21# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 22# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 23# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 24# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 25# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 26# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 27# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 28# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 30# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 32# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 33# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 35# _PyObject_MakeTpCall in /usr/bin/python3 206: 36# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 37# 0x0000000010162EE0 in /usr/bin/python3 206: 38# 0x00000000101B9704 in /usr/bin/python3 206: 39# 0x0000000010181FB4 in /usr/bin/python3 206: 40# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 41# 0x000000001030064C in /usr/bin/python3 206: 42# 0x0000000010258FE4 in /usr/bin/python3 206: 43# _PyObject_MakeTpCall in /usr/bin/python3 206: 44# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 45# 0x0000000010162EE0 in /usr/bin/python3 206: 46# 0x00000000101B9704 in /usr/bin/python3 206: 47# 0x0000000010181FB4 in /usr/bin/python3 206: 48# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 49# 0x000000001030064C in /usr/bin/python3 206: 50# 0x0000000010258FE4 in /usr/bin/python3 206: 51# _PyObject_MakeTpCall in /usr/bin/python3 206: 52# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 53# 0x0000000010162EE0 in /usr/bin/python3 206: 54# 0x00000000101B9704 in /usr/bin/python3 206: 55# 0x0000000010181FB4 in /usr/bin/python3 206: 56# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 57# 0x000000001030064C in /usr/bin/python3 206: 58# 0x0000000010258FE4 in /usr/bin/python3 206: 59# _PyObject_MakeTpCall in /usr/bin/python3 206: 60# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 61# 0x000000001016F888 in /usr/bin/python3 206: 62# _PyObject_MakeTpCall in /usr/bin/python3 206: 63# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 64# PyEval_EvalCode in /usr/bin/python3 206: 65# 0x000000001032E06C in /usr/bin/python3 206: 66# 0x000000001032844C in /usr/bin/python3 206: 67# 0x00000000103689CC in /usr/bin/python3 206: 68# 0x00000000103680D0 in /usr/bin/python3 206: 69# 0x0000000010367DA4 in /usr/bin/python3 206: 70# Py_RunMain in /usr/bin/python3 206: 71# 0x00000000102E95E8 in /usr/bin/python3 206: 72# Py_BytesMain in /usr/bin/python3 206: 73# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 74# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: .[04:03:44] 206: 206: **** 206: Pre-condition Violation 206: The trajectory must have dimension == 3 206: Violation occurred on line 113 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: traj.dimension() == 3 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::readAmberTrajectory(std::__cxx11::basic_string, std::allocator > const&, RDKit::Trajectory&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# boost::python::objects::caller_py_function_impl, std::allocator > const&, RDKit::Trajectory&), boost::python::default_call_policies, boost::mpl::vector3, std::allocator > const&, RDKit::Trajectory&> > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 5# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 15# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 17# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 19# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 21# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 23# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 27# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 29# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 31# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 32# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 33# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# _PyObject_MakeTpCall in /usr/bin/python3 206: 35# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 36# 0x0000000010162EE0 in /usr/bin/python3 206: 37# 0x00000000101B9704 in /usr/bin/python3 206: 38# 0x0000000010181FB4 in /usr/bin/python3 206: 39# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 40# 0x000000001030064C in /usr/bin/python3 206: 41# 0x0000000010258FE4 in /usr/bin/python3 206: 42# _PyObject_MakeTpCall in /usr/bin/python3 206: 43# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 44# 0x0000000010162EE0 in /usr/bin/python3 206: 45# 0x00000000101B9704 in /usr/bin/python3 206: 46# 0x0000000010181FB4 in /usr/bin/python3 206: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 48# 0x000000001030064C in /usr/bin/python3 206: 49# 0x0000000010258FE4 in /usr/bin/python3 206: 50# _PyObject_MakeTpCall in /usr/bin/python3 206: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 52# 0x0000000010162EE0 in /usr/bin/python3 206: 53# 0x00000000101B9704 in /usr/bin/python3 206: 54# 0x0000000010181FB4 in /usr/bin/python3 206: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 56# 0x000000001030064C in /usr/bin/python3 206: 57# 0x0000000010258FE4 in /usr/bin/python3 206: 58# _PyObject_MakeTpCall in /usr/bin/python3 206: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 60# 0x000000001016F888 in /usr/bin/python3 206: 61# _PyObject_MakeTpCall in /usr/bin/python3 206: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 63# PyEval_EvalCode in /usr/bin/python3 206: 64# 0x000000001032E06C in /usr/bin/python3 206: 65# 0x000000001032844C in /usr/bin/python3 206: 66# 0x00000000103689CC in /usr/bin/python3 206: 67# 0x00000000103680D0 in /usr/bin/python3 206: 68# 0x0000000010367DA4 in /usr/bin/python3 206: 69# Py_RunMain in /usr/bin/python3 206: 70# 0x00000000102E95E8 in /usr/bin/python3 206: 71# Py_BytesMain in /usr/bin/python3 206: 72# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 73# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: ..[04:03:44] 206: 206: **** 204: ......[04:03:44] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 204: [04:03:44] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 204: [04:03:44] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 204: [04:03:44] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 206: Pre-condition Violation 206: The trajectory must have dimension == 3 206: Violation occurred on line 154 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: traj.dimension() == 3 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::readGromosTrajectory(std::__cxx11::basic_string, std::allocator > const&, RDKit::Trajectory&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# boost::python::objects::caller_py_function_impl, std::allocator > const&, RDKit::Trajectory&), boost::python::default_call_policies, boost::mpl::vector3, std::allocator > const&, RDKit::Trajectory&> > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 5# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 15# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 17# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 19# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 21# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 23# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 27# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 29# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 31# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 32# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 33# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# _PyObject_MakeTpCall in /usr/bin/python3 206: 35# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 36# 0x0000000010162EE0 in /usr/bin/python3 206: 37# 0x00000000101B9704 in /usr/bin/python3 206: 38# 0x0000000010181FB4 in /usr/bin/python3 206: 39# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 40# 0x000000001030064C in /usr/bin/python3 206: 41# 0x0000000010258FE4 in /usr/bin/python3 206: 42# _PyObject_MakeTpCall in /usr/bin/python3 206: 43# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 44# 0x0000000010162EE0 in /usr/bin/python3 206: 45# 0x00000000101B9704 in /usr/bin/python3 206: 46# 0x0000000010181FB4 in /usr/bin/python3 206: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 48# 0x000000001030064C in /usr/bin/python3 206: 49# 0x0000000010258FE4 in /usr/bin/python3 206: 50# _PyObject_MakeTpCall in /usr/bin/python3 206: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 52# 0x0000000010162EE0 in /usr/bin/python3 206: 53# 0x00000000101B9704 in /usr/bin/python3 206: 54# 0x0000000010181FB4 in /usr/bin/python3 206: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 56# 0x000000001030064C in /usr/bin/python3 206: 57# 0x0000000010258FE4 in /usr/bin/python3 206: 58# _PyObject_MakeTpCall in /usr/bin/python3 206: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 60# 0x000000001016F888 in /usr/bin/python3 206: 61# _PyObject_MakeTpCall in /usr/bin/python3 206: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 63# PyEval_EvalCode in /usr/bin/python3 206: 64# 0x000000001032E06C in /usr/bin/python3 206: 65# 0x000000001032844C in /usr/bin/python3 206: 66# 0x00000000103689CC in /usr/bin/python3 206: 67# 0x00000000103680D0 in /usr/bin/python3 206: 68# 0x0000000010367DA4 in /usr/bin/python3 206: 69# Py_RunMain in /usr/bin/python3 206: 70# 0x00000000102E95E8 in /usr/bin/python3 206: 71# Py_BytesMain in /usr/bin/python3 206: 72# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 73# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: .[04:03:44] 206: 206: **** 206: Pre-condition Violation 206: d_pos must not be NULL 206: Violation occurred on line 23 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: d_pos 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::Snapshot::getPoint2D(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 5# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 15# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 17# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 19# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 21# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 23# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 27# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 29# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 31# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 32# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 33# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# _PyObject_MakeTpCall in /usr/bin/python3 206: 35# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 36# 0x0000000010162EE0 in /usr/bin/python3 206: 37# 0x00000000101B9704 in /usr/bin/python3 206: 38# 0x0000000010181FB4 in /usr/bin/python3 206: 39# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 40# 0x000000001030064C in /usr/bin/python3 206: 41# 0x0000000010258FE4 in /usr/bin/python3 206: 42# _PyObject_MakeTpCall in /usr/bin/python3 206: 43# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 44# 0x0000000010162EE0 in /usr/bin/python3 206: 45# 0x00000000101B9704 in /usr/bin/python3 206: 46# 0x0000000010181FB4 in /usr/bin/python3 206: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 48# 0x000000001030064C in /usr/bin/python3 206: 49# 0x0000000010258FE4 in /usr/bin/python3 206: 50# _PyObject_MakeTpCall in /usr/bin/python3 206: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 52# 0x0000000010162EE0 in /usr/bin/python3 206: 53# 0x00000000101B9704 in /usr/bin/python3 206: 54# 0x0000000010181FB4 in /usr/bin/python3 206: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 56# 0x000000001030064C in /usr/bin/python3 206: 57# 0x0000000010258FE4 in /usr/bin/python3 206: 58# _PyObject_MakeTpCall in /usr/bin/python3 206: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 60# 0x000000001016F888 in /usr/bin/python3 206: 61# _PyObject_MakeTpCall in /usr/bin/python3 206: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 63# PyEval_EvalCode in /usr/bin/python3 206: 64# 0x000000001032E06C in /usr/bin/python3 206: 65# 0x000000001032844C in /usr/bin/python3 206: 66# 0x00000000103689CC in /usr/bin/python3 206: 67# 0x00000000103680D0 in /usr/bin/python3 206: 68# 0x0000000010367DA4 in /usr/bin/python3 206: 69# Py_RunMain in /usr/bin/python3 206: 70# 0x00000000102E95E8 in /usr/bin/python3 206: 71# Py_BytesMain in /usr/bin/python3 206: 72# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 73# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: [04:03:44] 206: 206: **** 206: Pre-condition Violation 206: d_trajectory must not be NULL 206: Violation occurred on line 24 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: d_trajectory 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::Snapshot::getPoint2D(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 5# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 15# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 17# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 19# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 21# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 23# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 27# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 29# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 31# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 32# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 33# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# _PyObject_MakeTpCall in /usr/bin/python3 206: 35# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 36# 0x0000000010162EE0 in /usr/bin/python3 206: 37# 0x00000000101B9704 in /usr/bin/python3 206: 38# 0x0000000010181FB4 in /usr/bin/python3 206: 39# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 40# 0x000000001030064C in /usr/bin/python3 206: 41# 0x0000000010258FE4 in /usr/bin/python3 206: 42# _PyObject_MakeTpCall in /usr/bin/python3 206: 43# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 44# 0x0000000010162EE0 in /usr/bin/python3 206: 45# 0x00000000101B9704 in /usr/bin/python3 206: 46# 0x0000000010181FB4 in /usr/bin/python3 206: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 48# 0x000000001030064C in /usr/bin/python3 206: 49# 0x0000000010258FE4 in /usr/bin/python3 206: 50# _PyObject_MakeTpCall in /usr/bin/python3 206: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 52# 0x0000000010162EE0 in /usr/bin/python3 206: 53# 0x00000000101B9704 in /usr/bin/python3 206: 54# 0x0000000010181FB4 in /usr/bin/python3 206: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 56# 0x000000001030064C in /usr/bin/python3 206: 57# 0x0000000010258FE4 in /usr/bin/python3 206: 58# _PyObject_MakeTpCall in /usr/bin/python3 206: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 60# 0x000000001016F888 in /usr/bin/python3 206: 61# _PyObject_MakeTpCall in /usr/bin/python3 206: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 63# PyEval_EvalCode in /usr/bin/python3 206: 64# 0x000000001032E06C in /usr/bin/python3 206: 65# 0x000000001032844C in /usr/bin/python3 206: 66# 0x00000000103689CC in /usr/bin/python3 206: 67# 0x00000000103680D0 in /usr/bin/python3 206: 68# 0x0000000010367DA4 in /usr/bin/python3 206: 69# Py_RunMain in /usr/bin/python3 206: 70# 0x00000000102E95E8 in /usr/bin/python3 206: 71# Py_BytesMain in /usr/bin/python3 206: 72# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 73# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: .[04:03:44] 206: 206: **** 206: Range Error 206: snapshotNum 206: Violation occurred on line 71 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: 5 < 5 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::Trajectory::getSnapshot(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# RDKit::getSnapshot_wrap(RDKit::Trajectory*, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::caller_py_function_impl, boost::mpl::vector3 > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 5# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 8# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 9# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 10# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 11# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 12# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 13# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 14# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 15# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 16# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 17# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 18# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 19# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 20# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 21# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 22# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 23# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 24# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 25# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 26# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 27# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 28# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 30# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 32# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 33# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 35# _PyObject_MakeTpCall in /usr/bin/python3 206: 36# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 37# 0x0000000010162EE0 in /usr/bin/python3 206: 38# 0x00000000101B9704 in /usr/bin/python3 206: 39# 0x0000000010181FB4 in /usr/bin/python3 206: 40# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 41# 0x000000001030064C in /usr/bin/python3 206: 42# 0x0000000010258FE4 in /usr/bin/python3 206: 43# _PyObject_MakeTpCall in /usr/bin/python3 206: 44# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 45# 0x0000000010162EE0 in /usr/bin/python3 206: 46# 0x00000000101B9704 in /usr/bin/python3 206: 47# 0x0000000010181FB4 in /usr/bin/python3 206: 48# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 49# 0x000000001030064C in /usr/bin/python3 206: 50# 0x0000000010258FE4 in /usr/bin/python3 206: 51# _PyObject_MakeTpCall in /usr/bin/python3 206: 52# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 53# 0x0000000010162EE0 in /usr/bin/python3 206: 54# 0x00000000101B9704 in /usr/bin/python3 206: 55# 0x0000000010181FB4 in /usr/bin/python3 206: 56# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 57# 0x000000001030064C in /usr/bin/python3 206: 58# 0x0000000010258FE4 in /usr/bin/python3 206: 59# _PyObject_MakeTpCall in /usr/bin/python3 206: 60# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 61# 0x000000001016F888 in /usr/bin/python3 206: 62# _PyObject_MakeTpCall in /usr/bin/python3 206: 63# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 64# PyEval_EvalCode in /usr/bin/python3 206: 65# 0x000000001032E06C in /usr/bin/python3 206: 66# 0x000000001032844C in /usr/bin/python3 206: 67# 0x00000000103689CC in /usr/bin/python3 206: 68# 0x00000000103680D0 in /usr/bin/python3 206: 69# 0x0000000010367DA4 in /usr/bin/python3 206: 70# Py_RunMain in /usr/bin/python3 206: 71# 0x00000000102E95E8 in /usr/bin/python3 206: 72# Py_BytesMain in /usr/bin/python3 206: 73# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 74# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: [04:03:44] 206: 206: **** 204: .........[04:03:44] non-ring atom 0 marked aromatic 204: [04:03:44] non-ring atom 0 marked aromatic 204: [04:03:44] 204: 204: **** 206: Range Error 206: pointNum 206: Violation occurred on line 27 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: 10 < 10 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::Snapshot::getPoint2D(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 5# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 15# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 17# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 19# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 21# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 23# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 27# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 29# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 31# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 32# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 33# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# _PyObject_MakeTpCall in /usr/bin/python3 206: 35# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 36# 0x0000000010162EE0 in /usr/bin/python3 206: 37# 0x00000000101B9704 in /usr/bin/python3 206: 38# 0x0000000010181FB4 in /usr/bin/python3 206: 39# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 40# 0x000000001030064C in /usr/bin/python3 206: 41# 0x0000000010258FE4 in /usr/bin/python3 206: 42# _PyObject_MakeTpCall in /usr/bin/python3 206: 43# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 44# 0x0000000010162EE0 in /usr/bin/python3 206: 45# 0x00000000101B9704 in /usr/bin/python3 206: 46# 0x0000000010181FB4 in /usr/bin/python3 206: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 48# 0x000000001030064C in /usr/bin/python3 206: 49# 0x0000000010258FE4 in /usr/bin/python3 206: 50# _PyObject_MakeTpCall in /usr/bin/python3 206: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 52# 0x0000000010162EE0 in /usr/bin/python3 206: 53# 0x00000000101B9704 in /usr/bin/python3 206: 54# 0x0000000010181FB4 in /usr/bin/python3 206: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 56# 0x000000001030064C in /usr/bin/python3 206: 57# 0x0000000010258FE4 in /usr/bin/python3 206: 58# _PyObject_MakeTpCall in /usr/bin/python3 206: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 60# 0x000000001016F888 in /usr/bin/python3 206: 61# _PyObject_MakeTpCall in /usr/bin/python3 206: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 63# PyEval_EvalCode in /usr/bin/python3 206: 64# 0x000000001032E06C in /usr/bin/python3 206: 65# 0x000000001032844C in /usr/bin/python3 206: 66# 0x00000000103689CC in /usr/bin/python3 206: 67# 0x00000000103680D0 in /usr/bin/python3 206: 68# 0x0000000010367DA4 in /usr/bin/python3 206: 69# Py_RunMain in /usr/bin/python3 206: 70# 0x00000000102E95E8 in /usr/bin/python3 206: 71# Py_BytesMain in /usr/bin/python3 206: 72# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 73# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: .[04:03:44] 206: 206: **** 206: Range Error 206: snapshotNum 206: Violation occurred on line 71 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: 5 < 5 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::Trajectory::getSnapshot(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# RDKit::getSnapshot_wrap(RDKit::Trajectory*, unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::caller_py_function_impl, boost::mpl::vector3 > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 5# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 8# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 9# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 10# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 11# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 12# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 13# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 14# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 15# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 16# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 17# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 18# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 19# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 20# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 21# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 22# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 23# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 24# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 25# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 26# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 27# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 28# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 30# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 32# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 33# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 35# _PyObject_MakeTpCall in /usr/bin/python3 206: 36# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 37# 0x0000000010162EE0 in /usr/bin/python3 206: 38# 0x00000000101B9704 in /usr/bin/python3 206: 39# 0x0000000010181FB4 in /usr/bin/python3 206: 40# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 41# 0x000000001030064C in /usr/bin/python3 206: 42# 0x0000000010258FE4 in /usr/bin/python3 206: 43# _PyObject_MakeTpCall in /usr/bin/python3 206: 44# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 45# 0x0000000010162EE0 in /usr/bin/python3 206: 46# 0x00000000101B9704 in /usr/bin/python3 206: 47# 0x0000000010181FB4 in /usr/bin/python3 206: 48# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 49# 0x000000001030064C in /usr/bin/python3 206: 50# 0x0000000010258FE4 in /usr/bin/python3 206: 51# _PyObject_MakeTpCall in /usr/bin/python3 206: 52# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 53# 0x0000000010162EE0 in /usr/bin/python3 206: 54# 0x00000000101B9704 in /usr/bin/python3 206: 55# 0x0000000010181FB4 in /usr/bin/python3 206: 56# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 57# 0x000000001030064C in /usr/bin/python3 206: 58# 0x0000000010258FE4 in /usr/bin/python3 206: 59# _PyObject_MakeTpCall in /usr/bin/python3 206: 60# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 61# 0x000000001016F888 in /usr/bin/python3 206: 62# _PyObject_MakeTpCall in /usr/bin/python3 206: 63# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 64# PyEval_EvalCode in /usr/bin/python3 206: 65# 0x000000001032E06C in /usr/bin/python3 206: 66# 0x000000001032844C in /usr/bin/python3 206: 67# 0x00000000103689CC in /usr/bin/python3 206: 68# 0x00000000103680D0 in /usr/bin/python3 206: 69# 0x0000000010367DA4 in /usr/bin/python3 206: 70# Py_RunMain in /usr/bin/python3 206: 71# 0x00000000102E95E8 in /usr/bin/python3 206: 72# Py_BytesMain in /usr/bin/python3 206: 73# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 74# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: [04:03:44] 206: 206: **** 204: Range Error 204: idx 204: Violation occurred on line 209 in file ./Code/GraphMol/ROMol.cpp 204: Failed Expression: 12 < 6 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::ROMol::getAtomWithIdx(unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 204: 3# RDKit::RWMol::removeAtom(unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 204: 4# 0x00007FFFA02AF5D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 5# 0x00007FFFA02ACEC4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 6# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 15# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 17# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 19# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 21# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 23# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 27# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 29# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 31# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 32# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 33# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 34# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 35# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 36# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 37# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 38# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 39# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 40# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 41# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 42# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 43# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 44# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 45# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 46# _PyObject_MakeTpCall in /usr/bin/python3 204: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 48# 0x0000000010162EE0 in /usr/bin/python3 204: 49# 0x00000000101B9704 in /usr/bin/python3 204: 50# 0x0000000010181FB4 in /usr/bin/python3 204: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 52# 0x000000001030064C in /usr/bin/python3 204: 53# 0x0000000010258FE4 in /usr/bin/python3 204: 54# _PyObject_MakeTpCall in /usr/bin/python3 204: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 56# 0x0000000010162EE0 in /usr/bin/python3 204: 57# 0x00000000101B9704 in /usr/bin/python3 204: 58# 0x0000000010181FB4 in /usr/bin/python3 204: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 60# 0x000000001030064C in /usr/bin/python3 204: 61# 0x0000000010258FE4 in /usr/bin/python3 204: 62# _PyObject_MakeTpCall in /usr/bin/python3 204: 63# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 64# 0x0000000010162EE0 in /usr/bin/python3 204: 65# 0x00000000101B9704 in /usr/bin/python3 204: 66# 0x0000000010181FB4 in /usr/bin/python3 204: 67# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 68# 0x000000001030064C in /usr/bin/python3 204: 69# 0x0000000010258FE4 in /usr/bin/python3 204: 70# _PyObject_MakeTpCall in /usr/bin/python3 204: 71# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 72# 0x000000001016F888 in /usr/bin/python3 204: 73# _PyObject_MakeTpCall in /usr/bin/python3 204: 74# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 75# PyEval_EvalCode in /usr/bin/python3 204: 76# 0x000000001032E06C in /usr/bin/python3 204: 77# 0x000000001032844C in /usr/bin/python3 204: 78# 0x00000000103689CC in /usr/bin/python3 204: 79# 0x00000000103680D0 in /usr/bin/python3 204: 80# 0x0000000010367DA4 in /usr/bin/python3 204: 81# Py_RunMain in /usr/bin/python3 204: 82# 0x00000000102E95E8 in /usr/bin/python3 204: 83# Py_BytesMain in /usr/bin/python3 204: 84# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 85# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 204: [04:03:45] non-ring atom 0 marked aromatic 204: [04:03:45] non-ring atom 0 marked aromatic 204: [04:03:45] 204: 204: **** 206: Pre-condition Violation 206: d_dimension must be == 2 206: Violation occurred on line 25 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: d_trajectory->dimension() == 2 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::Snapshot::getPoint2D(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 5# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 15# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 17# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 19# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 21# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 23# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 27# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 29# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 31# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 32# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 33# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# _PyObject_MakeTpCall in /usr/bin/python3 206: 35# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 36# 0x0000000010162EE0 in /usr/bin/python3 206: 37# 0x00000000101B9704 in /usr/bin/python3 206: 38# 0x0000000010181FB4 in /usr/bin/python3 206: 39# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 40# 0x000000001030064C in /usr/bin/python3 206: 41# 0x0000000010258FE4 in /usr/bin/python3 206: 42# _PyObject_MakeTpCall in /usr/bin/python3 206: 43# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 44# 0x0000000010162EE0 in /usr/bin/python3 206: 45# 0x00000000101B9704 in /usr/bin/python3 206: 46# 0x0000000010181FB4 in /usr/bin/python3 206: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 48# 0x000000001030064C in /usr/bin/python3 206: 49# 0x0000000010258FE4 in /usr/bin/python3 206: 50# _PyObject_MakeTpCall in /usr/bin/python3 206: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 52# 0x0000000010162EE0 in /usr/bin/python3 206: 53# 0x00000000101B9704 in /usr/bin/python3 206: 54# 0x0000000010181FB4 in /usr/bin/python3 206: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 56# 0x000000001030064C in /usr/bin/python3 206: 57# 0x0000000010258FE4 in /usr/bin/python3 206: 58# _PyObject_MakeTpCall in /usr/bin/python3 206: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 60# 0x000000001016F888 in /usr/bin/python3 206: 61# _PyObject_MakeTpCall in /usr/bin/python3 206: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 63# PyEval_EvalCode in /usr/bin/python3 206: 64# 0x000000001032E06C in /usr/bin/python3 206: 65# 0x000000001032844C in /usr/bin/python3 206: 66# 0x00000000103689CC in /usr/bin/python3 206: 67# 0x00000000103680D0 in /usr/bin/python3 206: 68# 0x0000000010367DA4 in /usr/bin/python3 206: 69# Py_RunMain in /usr/bin/python3 206: 70# 0x00000000102E95E8 in /usr/bin/python3 206: 71# Py_BytesMain in /usr/bin/python3 206: 72# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 73# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: [04:03:45] 206: 206: **** 204: Range Error 204: idx 204: Violation occurred on line 209 in file ./Code/GraphMol/ROMol.cpp 204: Failed Expression: 12 < 6 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::ROMol::getAtomWithIdx(unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 204: 3# RDKit::RWMol::removeAtom(unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 204: 4# 0x00007FFFA02AF5D8 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 5# 0x00007FFFA02ACEC4 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 6# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 15# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 17# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 19# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 21# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 23# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 27# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 29# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 31# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 32# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 33# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 34# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 35# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 36# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 37# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 38# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 39# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 40# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 41# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 42# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 43# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 44# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 45# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 46# _PyObject_MakeTpCall in /usr/bin/python3 204: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 48# 0x0000000010162EE0 in /usr/bin/python3 204: 49# 0x00000000101B9704 in /usr/bin/python3 204: 50# 0x0000000010181FB4 in /usr/bin/python3 204: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 52# 0x000000001030064C in /usr/bin/python3 204: 53# 0x0000000010258FE4 in /usr/bin/python3 204: 54# _PyObject_MakeTpCall in /usr/bin/python3 204: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 56# 0x0000000010162EE0 in /usr/bin/python3 204: 57# 0x00000000101B9704 in /usr/bin/python3 204: 58# 0x0000000010181FB4 in /usr/bin/python3 204: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 60# 0x000000001030064C in /usr/bin/python3 204: 61# 0x0000000010258FE4 in /usr/bin/python3 204: 62# _PyObject_MakeTpCall in /usr/bin/python3 204: 63# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 64# 0x0000000010162EE0 in /usr/bin/python3 204: 65# 0x00000000101B9704 in /usr/bin/python3 204: 66# 0x0000000010181FB4 in /usr/bin/python3 204: 67# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 68# 0x000000001030064C in /usr/bin/python3 204: 69# 0x0000000010258FE4 in /usr/bin/python3 204: 70# _PyObject_MakeTpCall in /usr/bin/python3 204: 71# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 72# 0x000000001016F888 in /usr/bin/python3 204: 73# _PyObject_MakeTpCall in /usr/bin/python3 204: 74# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 75# PyEval_EvalCode in /usr/bin/python3 204: 76# 0x000000001032E06C in /usr/bin/python3 204: 77# 0x000000001032844C in /usr/bin/python3 204: 78# 0x00000000103689CC in /usr/bin/python3 204: 79# 0x00000000103680D0 in /usr/bin/python3 204: 80# 0x0000000010367DA4 in /usr/bin/python3 204: 81# Py_RunMain in /usr/bin/python3 204: 82# 0x00000000102E95E8 in /usr/bin/python3 204: 83# Py_BytesMain in /usr/bin/python3 204: 84# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 85# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 206: Pre-condition Violation 206: d_dimension must be == 2 206: Violation occurred on line 25 in file ./Code/GraphMol/Trajectory/Trajectory.cpp 206: Failed Expression: d_trajectory->dimension() == 2 206: ---------- 206: Stacktrace: 206: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 206: 2# RDKit::Snapshot::getPoint2D(unsigned int) const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitTrajectory.so.1 206: 3# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdtrajectory.so 206: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 5# 0x00007FFFBB39AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 206: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 206: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 15# 0x00007FFFB8DA7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 17# 0x00007FFFB8DA71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 19# 0x00007FFFB8DA7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 21# 0x00007FFFB8DA70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 23# 0x00007FFFB8DA7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 206: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 27# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 29# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 31# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 206: 32# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 33# 0x00007FFFBB396264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 206: 34# _PyObject_MakeTpCall in /usr/bin/python3 206: 35# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 36# 0x0000000010162EE0 in /usr/bin/python3 206: 37# 0x00000000101B9704 in /usr/bin/python3 206: 38# 0x0000000010181FB4 in /usr/bin/python3 206: 39# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 40# 0x000000001030064C in /usr/bin/python3 206: 41# 0x0000000010258FE4 in /usr/bin/python3 206: 42# _PyObject_MakeTpCall in /usr/bin/python3 206: 43# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 44# 0x0000000010162EE0 in /usr/bin/python3 206: 45# 0x00000000101B9704 in /usr/bin/python3 206: 46# 0x0000000010181FB4 in /usr/bin/python3 206: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 48# 0x000000001030064C in /usr/bin/python3 206: 49# 0x0000000010258FE4 in /usr/bin/python3 206: 50# _PyObject_MakeTpCall in /usr/bin/python3 206: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 52# 0x0000000010162EE0 in /usr/bin/python3 206: 53# 0x00000000101B9704 in /usr/bin/python3 206: 54# 0x0000000010181FB4 in /usr/bin/python3 206: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 56# 0x000000001030064C in /usr/bin/python3 206: 57# 0x0000000010258FE4 in /usr/bin/python3 206: 58# _PyObject_MakeTpCall in /usr/bin/python3 206: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 60# 0x000000001016F888 in /usr/bin/python3 206: 61# _PyObject_MakeTpCall in /usr/bin/python3 206: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 206: 63# PyEval_EvalCode in /usr/bin/python3 206: 64# 0x000000001032E06C in /usr/bin/python3 206: 65# 0x000000001032844C in /usr/bin/python3 206: 66# 0x00000000103689CC in /usr/bin/python3 206: 67# 0x00000000103680D0 in /usr/bin/python3 206: 68# 0x0000000010367DA4 in /usr/bin/python3 206: 69# Py_RunMain in /usr/bin/python3 206: 70# 0x00000000102E95E8 in /usr/bin/python3 206: 71# Py_BytesMain in /usr/bin/python3 206: 72# 0x00007FFFBBC27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: 73# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 206: ---------- 206: **** 206: 206: . 206: ---------------------------------------------------------------------- 206: Ran 9 tests in 0.404s 206: 206: OK 206: Testing Trajectory wrapper 204: ...............[04:03:45] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count. 204: [04:03:45] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count. 207: ............. 207: ---------------------------------------------------------------------- 207: Ran 13 tests in 0.046s 207: 207: OK 207: Testing SubstanceGroups wrapper 149: O=C(O)[C@@H]1C[C@H]2C[C@@H](CCc3nn[nH]n3)CC[C@H]2CN1 200/246 Test #206: pyTestTrajectory ....................... Passed 0.68 sec test 208 Start 208: pyTestSCSR 208: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/testSCSR.py" 208: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap 208: Test timeout computed to be: 7200 204: ..............[04:03:45] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 204: [04:03:45] Explicit valence for atom # 1 C, 5, is greater than permitted 201/246 Test #207: pyTestSGroups .......................... Passed 0.51 sec test 209 Start 209: pyTestThreads 209: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/testThreads.py" 209: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap 209: Test timeout computed to be: 7200 149: COc1ccc2c(c1)OC[C@@H](N1CCC(O)(c3ccc(F)cc3)CC1)[C@H]2O 208: ... 208: ---------------------------------------------------------------------- 208: Ran 3 tests in 0.031s 208: 208: OK 202/246 Test #208: pyTestSCSR ............................. Passed 0.38 sec test 210 Start 210: pyTestMultithreadedMolSupplier 210: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/testMultithreadedMolSupplier.py" 210: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap 210: Test timeout computed to be: 7200 210: .s... 210: ---------------------------------------------------------------------- 210: Ran 5 tests in 0.124s 210: 210: OK (skipped=1) 204: ............................[04:03:46] unable to set wavy bonds for double bonds: 3 203/246 Test #210: pyTestMultithreadedMolSupplier ......... Passed 0.51 sec test 211 Start 211: pyTestPropertyLists 211: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/testPropertyLists.py" 211: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap 211: Test timeout computed to be: 7200 204: .............[04:03:46] 204: 204: **** 204: Range Error 204: idx 204: Violation occurred on line 209 in file ./Code/GraphMol/ROMol.cpp 204: Failed Expression: 6 < 5 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::ROMol::getAtomWithIdx(unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 204: 3# RDKit::RWMol::removeAtom(unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 204: 4# RDKit::ReadWriteMol::RemoveAtom(unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 5# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 6# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 15# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 17# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 19# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 21# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 23# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 25# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 27# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 29# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 31# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 32# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 33# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 34# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 35# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 36# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 37# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 38# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 39# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 40# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 41# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 42# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 43# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 44# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 45# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 46# _PyObject_MakeTpCall in /usr/bin/python3 204: 47# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 48# 0x0000000010162EE0 in /usr/bin/python3 204: 49# 0x00000000101B9704 in /usr/bin/python3 204: 50# 0x0000000010181FB4 in /usr/bin/python3 204: 51# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 52# 0x000000001030064C in /usr/bin/python3 204: 53# 0x0000000010258FE4 in /usr/bin/python3 204: 54# _PyObject_MakeTpCall in /usr/bin/python3 204: 55# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 56# 0x0000000010162EE0 in /usr/bin/python3 204: 57# 0x00000000101B9704 in /usr/bin/python3 204: 58# 0x0000000010181FB4 in /usr/bin/python3 204: 59# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 60# 0x000000001030064C in /usr/bin/python3 204: 61# 0x0000000010258FE4 in /usr/bin/python3 204: 62# _PyObject_MakeTpCall in /usr/bin/python3 204: 63# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 64# 0x0000000010162EE0 in /usr/bin/python3 204: 65# 0x00000000101B9704 in /usr/bin/python3 204: 66# 0x0000000010181FB4 in /usr/bin/python3 204: 67# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 68# 0x000000001030064C in /usr/bin/python3 204: 69# 0x0000000010258FE4 in /usr/bin/python3 204: 70# _PyObject_MakeTpCall in /usr/bin/python3 204: 71# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 72# 0x000000001016F888 in /usr/bin/python3 204: 73# _PyObject_MakeTpCall in /usr/bin/python3 204: 74# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 75# PyEval_EvalCode in /usr/bin/python3 204: 76# 0x000000001032E06C in /usr/bin/python3 204: 77# 0x000000001032844C in /usr/bin/python3 204: 78# 0x00000000103689CC in /usr/bin/python3 204: 79# 0x00000000103680D0 in /usr/bin/python3 204: 80# 0x0000000010367DA4 in /usr/bin/python3 204: 81# Py_RunMain in /usr/bin/python3 204: 82# 0x00000000102E95E8 in /usr/bin/python3 204: 83# Py_BytesMain in /usr/bin/python3 204: 84# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 85# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 149: Oc1ccc2c(c1)OC[C@@H](N1CCC(Cc3ccccc3)CC1)[C@H]2O 204/246 Test #209: pyTestThreads .......................... Passed 1.00 sec test 212 Start 212: pyCDXMLTest 212: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Wrap/test_cdxml.py" 212: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Wrap 212: Test timeout computed to be: 7200 211: [04:03:46] Value [?] for property atom.iprop.PartiallyMissingInt of atom 0 can not be parsed. Ignoring it. 211: [04:03:46] Value ? for property atom.iprop.PartiallyMissingInt of atom 3 can not be parsed. Ignoring it. 211: [04:03:46] Value $$$$ for property atom.iprop.PartiallyMissingInt of atom 4 can not be parsed. Ignoring it. 211: .[04:03:46] Value [?] for property atom.iprop.PartiallyMissingInt of atom 0 can not be parsed. Ignoring it. 211: [04:03:46] Value ? for property atom.iprop.PartiallyMissingInt of atom 3 can not be parsed. Ignoring it. 211: [04:03:46] Value $$$$ for property atom.iprop.PartiallyMissingInt of atom 4 can not be parsed. Ignoring it. 211: ...[04:03:46] Value [?] for property atom.iprop.PartiallyMissingInt of atom 0 can not be parsed. Ignoring it. 211: [04:03:46] Value ? for property atom.iprop.PartiallyMissingInt of atom 3 can not be parsed. Ignoring it. 211: [04:03:46] Value $$$$ for property atom.iprop.PartiallyMissingInt of atom 4 can not be parsed. Ignoring it. 211: . 211: ---------------------------------------------------------------------- 211: Ran 5 tests in 0.016s 211: 211: OK 205/246 Test #211: pyTestPropertyLists .................... Passed 0.35 sec test 213 Start 213: molStandardizeTest 213: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/molStandardizeTest 213: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize 213: Test timeout computed to be: 7200 212: .. 212: ---------------------------------------------------------------------- 212: Ran 2 tests in 0.003s 212: 212: OK 206/246 Test #212: pyCDXMLTest ............................ Passed 0.42 sec test 214 Start 214: molNormalizeTest 214: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/molNormalizeTest 214: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize 214: Test timeout computed to be: 7200 214: [04:03:46] Can't kekulize mol. Unkekulized atoms: 3 7 8 9 214: [04:03:46] Initializing Normalizer 214: [04:03:46] Running Normalizer 214: [04:03:46] Rule applied: BrokenazidetoN=N+=N- 214: [04:03:46] Initializing Normalizer 214: [04:03:46] Running Normalizer 214: [04:03:46] Initializing Normalizer 214: [04:03:46] Running Normalizer 207/246 Test #214: molNormalizeTest ....................... Passed 0.18 sec test 215 Start 215: molValidateTest 215: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/molValidateTest 215: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize 215: Test timeout computed to be: 7200 215: ERROR: [FeaturesValidation] Query atom 0 is not allowed 215: ERROR: [FeaturesValidation] Dummy atom 0 is not allowed 215: ERROR: [FeaturesValidation] Query bond 0 is not allowed 215: ERROR: [FeaturesValidation] Bond 0 of aromatic type is not allowed 215: ERROR: [FeaturesValidation] Bond 1 of aromatic type is not allowed 215: ERROR: [FeaturesValidation] Bond 2 of aromatic type is not allowed 215: ERROR: [FeaturesValidation] Bond 3 of aromatic type is not allowed 215: ERROR: [FeaturesValidation] Bond 5 of aromatic type is not allowed 215: ERROR: [FeaturesValidation] Bond 6 of aromatic type is not allowed 215: ERROR: [FeaturesValidation] Bond 2 of dative type is not allowed 215: ERROR: [FeaturesValidation] Bond 3 of dative type is not allowed 215: ERROR: [FeaturesValidation] Atom 2 with alias 'CF3' is not allowed 215: ERROR: [FeaturesValidation] Enhanced stereochemistry features are not allowed 215: ERROR: [StereoValidation] Atom 3 has both unknown and wedged/dashed stereo bonds. 215: here 215: ERROR: [StereoValidation] Bond 3 has assigned stereo type, but unexpected bond order. 215: there 215: ERROR: [StereoValidation] Atom 0 has stereo bonds, but less than 3 explicit substituents. 208/246 Test #215: molValidateTest ........................ Passed 0.07 sec test 216 Start 216: molChargeTest 216: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/molChargeTest 216: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize 216: Test timeout computed to be: 7200 209/246 Test #216: molChargeTest .......................... Passed 0.12 sec test 217 Start 217: molTautomerTest 217: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/molTautomerTest 217: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize 217: Test timeout computed to be: 7200 149: Oc1ccc2c(c1)OC[C@H](N1CCC(O)(c3ccccc3)CC1)[C@@H]2O 210/246 Test #213: molStandardizeTest ..................... Passed 0.89 sec test 218 Start 218: molStandardizeSmallTest 218: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/molStandardizeSmallTest 218: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize 218: Test timeout computed to be: 7200 211/246 Test #218: molStandardizeSmallTest ................ Passed 0.05 sec test 219 Start 219: molFragmentTest 219: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/molFragmentTest 219: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize 219: Test timeout computed to be: 7200 219: [04:03:47] SMARTS Parse Error: syntax error while parsing: [Cl 219: [04:03:47] SMARTS Parse Error: check for mistakes around position 3: 219: [04:03:47] [Cl 219: [04:03:47] ~~^ 219: [04:03:47] SMARTS Parse Error: Failed parsing SMARTS '[Cl' for input: '[Cl' 212/246 Test #219: molFragmentTest ........................ Passed 0.07 sec test 220 Start 220: molStandardizeCatchTest 220: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/molStandardizeCatchTest 220: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize 220: Test timeout computed to be: 7200 217: [04:03:47] Tautomer enumeration stopped at 292 tautomers: max transforms reached 204: .....................[04:03:47] Explicit valence for atom # 1 F, 2, is greater than permitted 204: [04:03:47] Explicit valence for atom # 6 F, 2, is greater than permitted 204: [04:03:47] Can't kekulize mol. Unkekulized atoms: 3 4 5 220: Randomness seeded to: 968264902 220: * - * - * - * m1 204: ..smi: CC1=C(n2cccc2[C@H](C)Cl)C(C)CCC1 |(2.679,0.4142,;1.3509,1.181,;0.0229,0.4141,;0.0229,-1.1195,;1.2645,-2.0302,;0.7901,-3.4813,;-0.7446,-3.4813,;-1.219,-2.0302,;-2.679,-1.5609,;-3.0039,-0.0556,;-3.8202,-2.595,;-1.3054,1.1809,;-2.6335,0.4141,;-1.3054,2.7145,;0.0229,3.4813,;1.3509,2.7146,),wD:8.9,2.11,a:2,&1:8| 204: CC/C=C/C(/C=C/CC)=C(CC)CO 204: CC/C=C\C(/C=C/CC)=C(CC)CO 204: CC/C=C\C(/C=C/CC)=C(CC)CO 204: CC/C=C\C(/C=C\CC)=C(CC)CO 204: CC/C=C\C(/C=C/CC)=C(CC)CO 204: 2 STEREOZ 204: 5 STEREOE 204: 8 STEREOANY 204: CC/C=C/C(/C=C/CC)=C(CC)CO 204: 2 STEREOE 204: 5 STEREOE 204: CC/C=C\C(/C=C\CC)=C(CC)CO 204: 2 STEREOZ 204: 5 STEREOZ 220: * - * - * - * m2 220: * - * - * - * m1 220: * - * - * - * m2 220: [04:03:47] Can't kekulize mol. Unkekulized atoms: 3 7 220: [04:03:47] Can't kekulize mol. Unkekulized atoms: 3 8 220: [04:03:47] Can't kekulize mol. Unkekulized atoms: 2 3 4 217: [04:03:48] Tautomer enumeration stopped at 292 tautomers: max transforms reached 217: [04:03:48] Tautomer enumeration stopped at 50 tautomers: max tautomers reached 149: CC(=O)c1ccc2c(c1)[C@@]13CCCC[C@H]1[C@@H](C2)N(CC1CC1)CC3 217: [04:03:48] Tautomer enumeration stopped at 72 tautomers: canceled 217: Enumeration was canceled due to timeout (50 ms) 217: 375 217: Enumeration has completed 217: [04:03:49] Tautomer enumeration stopped at 67 tautomers: canceled 149: CC(=O)O[C@@H]1CC[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C1)OCO5 217: CN=c1cc[nH]cn1 217: CN=c1ccnc[nH]1 217: CNc1ccncn1 217: res: CNc1ccncn1 217: CN=c1cccc[nH]1 217: CNc1ccccn1 217: res: CNc1ccccn1 204: ..................[04:03:50] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 149: COc1cc2c(cc1OC)[C@@H]1C[C@@H]3C[C@H](O)CC[C@@H]3CN1CC2 213/246 Test #217: molTautomerTest ........................ Passed 3.77 sec test 221 Start 221: molStandardizePipelineTest 221: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/molStandardizePipelineTest 221: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize 221: Test timeout computed to be: 7200 221: Randomness seeded to: 1934435253 221: 1 Counts line too short: '' on line4 221: 1 Could not instantiate a valid molecule from input 221: 8 Molecule has no atoms 221: [04:03:50] Explicit valence for atom # 1 N, 4, is greater than permitted 221: [04:03:50] Explicit valence for atom # 1 N, 4, is greater than permitted 221: 8 Explicit valence for atom # 1 N, 4, is greater than permitted 221: 128 An error occurred while preparing the molecule for standardization. 221: 8 The molecule contains an unknown isotope: 3C 221: 4 Query atom 0 is not allowed 221: 4 Bond 0 of aromatic type is not allowed 221: 4 Bond 1 of aromatic type is not allowed 221: 4 Bond 2 of aromatic type is not allowed 221: 4 Bond 3 of aromatic type is not allowed 221: 4 Bond 5 of aromatic type is not allowed 221: 4 Bond 6 of aromatic type is not allowed 221: 4 Bond 2 of dative type is not allowed 221: 4 Bond 3 of dative type is not allowed 221: 4 Enhanced stereochemistry features are not allowed 221: 8 The radical at atom 0 is not allowed 221: [04:03:50] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 221: 16 The molecule includes non-null Z coordinates 221: 32 Atom 0 too close to bond 2 221: 32 The length of bond 3 between atoms 0 and 3 exceeds a configured limit 221: 64 Atom 0 has 3 explicit substituents and multiple stereo bonds 221: 64 Atom 0 has adjacent stereo bonds with like orientation 221: [04:03:50] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 221: 16 The molecule includes non-null Z coordinates 221: 64 Atom 0 has adjacent stereo bonds with like orientation 221: 32 The length of bond 16 between atoms 16 and 1 exceeds a configured limit 221: 8388608 One or more metal atoms were disconnected. 221: 33554432 One or more disconnected fragments (e.g., counterions) were removed. 221: 67108864 The protonation state was adjusted. 221: 16777216 The representation of some functional groups was adjusted. 221: 67108864 The protonation state was adjusted. 221: 16777216 The representation of some functional groups was adjusted. 221: 67108864 The protonation state was adjusted. 221: 16777216 The representation of some functional groups was adjusted. 221: 16777216 The representation of some functional groups was adjusted. 221: 67108864 The protonation state was adjusted. 221: 16777216 The representation of some functional groups was adjusted. 221: 67108864 The protonation state was adjusted. 221: 16777216 The representation of some functional groups was adjusted. 221: 67108864 The protonation state was adjusted. 221: 16777216 The representation of some functional groups was adjusted. 221: 67108864 The protonation state was adjusted. 221: 8388608 One or more metal atoms were disconnected. 221: 33554432 One or more disconnected fragments (e.g., counterions) were removed. 221: 67108864 The protonation state was adjusted. 221: 8388608 One or more metal atoms were disconnected. 221: 33554432 One or more disconnected fragments (e.g., counterions) were removed. 221: 67108864 The protonation state was adjusted. 221: 8388608 One or more metal atoms were disconnected. 221: 33554432 One or more disconnected fragments (e.g., counterions) were removed. 221: 67108864 The protonation state was adjusted. 221: 8388608 One or more metal atoms were disconnected. 221: 33554432 One or more disconnected fragments (e.g., counterions) were removed. 221: 67108864 The protonation state was adjusted. 221: 8388608 One or more metal atoms were disconnected. 221: 33554432 One or more disconnected fragments (e.g., counterions) were removed. 221: 67108864 The protonation state was adjusted. 221: 16777216 The "wavy" style of bond 4 was removed 221: 16777216 Double bond 1 was assigned an undefined/unknown stereochemical configuration 221: 16777216 The "wavy" style of bond 2 was removed 221: 16777216 Double bond 2 was assigned an undefined/unknown stereochemical configuration 221: 16777216 The "wavy" style of bond 1 was removed 221: 16777216 Double bond 2 was assigned an undefined/unknown stereochemical configuration 221: 16777216 The "wavy" style of bond 1 was removed 221: 16777216 The "wavy" style of bond 4 was removed 221: 16777216 Double bond 2 was assigned an undefined/unknown stereochemical configuration 221: 16777216 The "wavy" style of bond 3 was removed 221: 16777216 Double bond 1 was assigned an undefined/unknown stereochemical configuration 221: 16777216 The "wavy" style of bond 2 was removed 221: 16777216 Double bond 2 was assigned an undefined/unknown stereochemical configuration 221: 16777216 The "wavy" style of bond 1 was removed 221: 16777216 Double bond 2 was assigned an undefined/unknown stereochemical configuration 221: 16777216 The "wavy" style of bond 1 was removed 221: 16777216 The "wavy" style of bond 4 was removed 221: 16777216 The "wavy" style of bond 3 was removed 221: 16777216 The representation of some functional groups was adjusted. 221: [04:03:51] Can't kekulize mol. Unkekulized atoms: 2 3 5 221: =============================================================================== 221: All tests passed (318 assertions in 5 test cases) 221: 214/246 Test #221: molStandardizePipelineTest ............. Passed 0.31 sec test 222 Start 222: pyMolStandardize 222: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolStandardize/Wrap/testMolStandardize.py" 222: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolStandardize/Wrap 222: Test timeout computed to be: 7200 222: .....[04:03:51] Tautomer enumeration stopped at 292 tautomers: max transforms reached 222: [04:03:51] Tautomer enumeration stopped at 50 tautomers: max tautomers reached 222: .[04:03:51] Tautomer enumeration stopped at 85 tautomers: canceled 222: Enumeration was canceled due to timeout (50 ms) 149: N#C[C@@H]1C[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C[C@@H]1O)OCO5 149: COC(=O)[C@@H]1C[C@](C)(C(=O)O)NC(=O)N1 222: Enumeration has completed 222: [04:03:53] Tautomer enumeration stopped at 43 tautomers: canceled 149: CC(=O)OC1=C(Sc2ccccc2)C[C@H]2Cc3cc4cccc(O)c4c(O)c3C(=O)[C@H]2C1 222: ..........[04:03:53] Explicit valence for atom # 1 N, 4, is greater than permitted 222: [04:03:53] Explicit valence for atom # 1 N, 4, is greater than permitted 222: [04:03:53] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 222: [04:03:53] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 179: ......[04:03:54] 179: 179: **** 179: Invariant Violation 179: molzip: bond info not properly setup for bgn atom with label:1 179: Violation occurred on line 1093 in file ./Code/GraphMol/ChemTransforms/MolFragmenter.cpp 179: Failed Expression: bond.a 179: ---------- 179: Stacktrace: 179: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 179: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 179: 2# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&, std::optional, std::allocator > > >&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 179: 3# RDKit::molzip(RDKit::ROMol const&, RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 179: 4# RDKit::molzip(RDKit::ROMol const&, RDKit::MolzipParams const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitChemTransforms.so.1 179: 5# RDKit::SynthonSpaceSearch::SynthonSet::makeSynthonSearchMols() in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSynthonSpaceSearch.so.1 179: 6# RDKit::SynthonSpaceSearch::SynthonSpace::readStream(std::istream&, bool&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSynthonSpaceSearch.so.1 179: 7# RDKit::SynthonSpaceSearch::SynthonSpace::readTextFile(std::__cxx11::basic_string, std::allocator > const&, bool&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitSynthonSpaceSearch.so.1 179: 8# RDKit::readTextFile_helper(RDKit::SynthonSpaceSearch::SynthonSpace&, std::__cxx11::basic_string, std::allocator > const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSynthonSpaceSearch.so 179: 9# boost::python::objects::caller_py_function_impl, std::allocator > const&), boost::python::default_call_policies, boost::mpl::vector3, std::allocator > const&> > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSynthonSpaceSearch.so 179: 10# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 11# 0x00007FFF86D7AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 179: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 15# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 179: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 17# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 179: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 19# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 179: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 21# 0x00007FFF847A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 179: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 23# 0x00007FFF847A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 179: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 25# 0x00007FFF847A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 179: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 27# 0x00007FFF847A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 179: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 29# 0x00007FFF847A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 179: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 31# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 179: 32# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 33# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 179: 34# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 35# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 179: 36# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 37# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 179: 38# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 39# 0x00007FFF86D76264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 179: 40# _PyObject_MakeTpCall in /usr/bin/python3 179: 41# 0x00000000102FDCFC in /usr/bin/python3 179: 42# 0x00000000101B990C in /usr/bin/python3 179: 43# 0x0000000010181FB4 in /usr/bin/python3 179: 44# _PyEval_EvalFrameDefault in /usr/bin/python3 179: 45# 0x0000000010162EE0 in /usr/bin/python3 179: 46# 0x00000000101B9704 in /usr/bin/python3 179: 47# 0x0000000010181FB4 in /usr/bin/python3 179: 48# _PyEval_EvalFrameDefault in /usr/bin/python3 179: 49# 0x000000001030064C in /usr/bin/python3 179: 50# 0x0000000010258FE4 in /usr/bin/python3 179: 51# _PyObject_MakeTpCall in /usr/bin/python3 179: 52# _PyEval_EvalFrameDefault in /usr/bin/python3 179: 53# 0x0000000010162EE0 in /usr/bin/python3 179: 54# 0x00000000101B9704 in /usr/bin/python3 179: 55# 0x0000000010181FB4 in /usr/bin/python3 179: 56# _PyEval_EvalFrameDefault in /usr/bin/python3 179: 57# 0x000000001030064C in /usr/bin/python3 179: 58# 0x0000000010258FE4 in /usr/bin/python3 179: 59# _PyObject_MakeTpCall in /usr/bin/python3 179: 60# _PyEval_EvalFrameDefault in /usr/bin/python3 179: 61# 0x0000000010162EE0 in /usr/bin/python3 179: 62# 0x00000000101B9704 in /usr/bin/python3 179: 63# 0x0000000010181FB4 in /usr/bin/python3 179: 64# _PyEval_EvalFrameDefault in /usr/bin/python3 179: 65# 0x000000001030064C in /usr/bin/python3 179: 66# 0x0000000010258FE4 in /usr/bin/python3 179: 67# _PyObject_MakeTpCall in /usr/bin/python3 179: 68# _PyEval_EvalFrameDefault in /usr/bin/python3 179: 69# 0x000000001016F888 in /usr/bin/python3 179: 70# _PyObject_MakeTpCall in /usr/bin/python3 179: 71# _PyEval_EvalFrameDefault in /usr/bin/python3 179: 72# PyEval_EvalCode in /usr/bin/python3 179: 73# 0x000000001032E06C in /usr/bin/python3 179: 74# 0x000000001032844C in /usr/bin/python3 179: 75# 0x00000000103689CC in /usr/bin/python3 179: 76# 0x00000000103680D0 in /usr/bin/python3 179: 77# 0x0000000010367DA4 in /usr/bin/python3 179: 78# Py_RunMain in /usr/bin/python3 179: 79# 0x00000000102E95E8 in /usr/bin/python3 179: 80# Py_BytesMain in /usr/bin/python3 179: 81# 0x00007FFF87827224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 179: 82# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 179: ---------- 179: **** 179: 179: [04:03:54] Error:: in reaction amide-1 :: building molecule from synthons : 1-1 (c1cc[1*]ccc1C(=O)[1*]) and 2-1 ([1*]N1CCCC1) 179: molzip: bond info not properly setup for bgn atom with label:1 179: [04:03:54] Explicit valence for atom # 4 C, 5, is greater than permitted 179: [04:03:54] Error:: in reaction error-1 :: building molecule from synthons : 1-1 (C(=[2*])=CC=[1*]) and 2-1 (ClC([2*])=CN=[1*]) 179: Explicit valence for atom # 4 C, 5, is greater than permitted 149: Nc1ncnc2c1ncn2[C@@H]1C[C@H](CO)[C@@H](O)C1 222: ............[04:03:54] Warning: molecule is tagged as 2D, but at least one Z coordinate is not zero. Marking the mol as 3D. 222: [04:03:54] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 1 ignored. 222: [04:03:54] Warning: ambiguous stereochemistry - opposing bonds have opposite wedging - at atom 1 ignored. 222: ........[04:03:55] Explicit valence for atom # 1 O, 3, is greater than permitted 149: C[C@H](C(N)=O)N1CC[C@@]23CCCC[C@@H]2[C@@H]1Cc1ccc(OCc2cccc(F)c2)cc13 222: .. 222: ---------------------------------------------------------------------- 222: Ran 38 tests in 3.971s 222: 222: OK 222: done 215/246 Test #222: pyMolStandardize ....................... Passed 4.24 sec test 223 Start 223: testScaffoldNetwork 223: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork/testScaffoldNetwork 223: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork 223: Test timeout computed to be: 7200 223: Randomness seeded to: 3940873203 223: =============================================================================== 223: All tests passed (273 assertions in 19 test cases) 223: 216/246 Test #223: testScaffoldNetwork .................... Passed 1.39 sec test 224 Start 224: pyScaffoldNetwork 224: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork/Wrap/testScaffoldNetwork.py" 224: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork/Wrap 224: Test timeout computed to be: 7200 224: ....... 224: ---------------------------------------------------------------------- 224: Ran 7 tests in 0.163s 224: 224: OK 217/246 Test #224: pyScaffoldNetwork ...................... Passed 1.04 sec test 225 Start 225: pyScaffoldNetworkPickling 225: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/ScaffoldNetwork/Wrap/testPickleScaffoldNetwork.py" 225: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/ScaffoldNetwork/Wrap 225: Test timeout computed to be: 7200 150: [04:03:57] Interrupted, cancelling conformer generation 204: ..[04:03:57] 204: 204: **** 204: Pre-condition Violation 204: no owner 204: Violation occurred on line 153 in file ./Code/GraphMol/Atom.h 204: Failed Expression: dp_mol 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::Atom::getOwningMol() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 3# boost::python::objects::caller_py_function_impl, boost::mpl::vector2 > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 5# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 15# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 17# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 19# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 21# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 23# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 25# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 27# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 29# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 31# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 32# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 33# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 34# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 35# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 36# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 37# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 38# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 39# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 40# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 41# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 42# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 43# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 44# _PyObject_MakeTpCall in /usr/bin/python3 204: 45# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 46# 0x0000000010162EE0 in /usr/bin/python3 204: 47# 0x00000000101B9704 in /usr/bin/python3 204: 48# 0x0000000010181FB4 in /usr/bin/python3 204: 49# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 50# 0x000000001030064C in /usr/bin/python3 204: 51# 0x0000000010258FE4 in /usr/bin/python3 204: 52# _PyObject_MakeTpCall in /usr/bin/python3 204: 53# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 54# 0x0000000010162EE0 in /usr/bin/python3 204: 55# 0x00000000101B9704 in /usr/bin/python3 204: 56# 0x0000000010181FB4 in /usr/bin/python3 204: 57# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 58# 0x000000001030064C in /usr/bin/python3 204: 59# 0x0000000010258FE4 in /usr/bin/python3 204: 60# _PyObject_MakeTpCall in /usr/bin/python3 204: 61# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 62# 0x0000000010162EE0 in /usr/bin/python3 204: 63# 0x00000000101B9704 in /usr/bin/python3 204: 64# 0x0000000010181FB4 in /usr/bin/python3 204: 65# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 66# 0x000000001030064C in /usr/bin/python3 204: 67# 0x0000000010258FE4 in /usr/bin/python3 204: 68# _PyObject_MakeTpCall in /usr/bin/python3 204: 69# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 70# 0x000000001016F888 in /usr/bin/python3 204: 71# _PyObject_MakeTpCall in /usr/bin/python3 204: 72# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 73# PyEval_EvalCode in /usr/bin/python3 204: 74# 0x000000001032E06C in /usr/bin/python3 204: 75# 0x000000001032844C in /usr/bin/python3 204: 76# 0x00000000103689CC in /usr/bin/python3 204: 77# 0x00000000103680D0 in /usr/bin/python3 204: 78# 0x0000000010367DA4 in /usr/bin/python3 204: 79# Py_RunMain in /usr/bin/python3 204: 80# 0x00000000102E95E8 in /usr/bin/python3 204: 81# Py_BytesMain in /usr/bin/python3 204: 82# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 83# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 204: [04:03:57] 204: 204: **** 204: Pre-condition Violation 204: no owner 204: Violation occurred on line 153 in file ./Code/GraphMol/Atom.h 204: Failed Expression: dp_mol 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::Atom::getOwningMol() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 3# RDKit::AtomGetNeighbors(RDKit::Atom*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 4# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 5# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 6# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 8# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 9# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 10# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 11# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 12# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 13# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 14# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 15# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 16# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 17# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 18# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 19# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 20# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 21# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 22# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 23# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 24# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 25# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 26# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 27# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 28# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 30# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 32# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 33# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 34# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 35# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 36# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 37# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 38# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 39# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 40# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 41# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 42# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 43# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 44# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 45# _PyObject_MakeTpCall in /usr/bin/python3 204: 46# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 47# 0x0000000010162EE0 in /usr/bin/python3 204: 48# 0x00000000101B9704 in /usr/bin/python3 204: 49# 0x0000000010181FB4 in /usr/bin/python3 204: 50# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 51# 0x000000001030064C in /usr/bin/python3 204: 52# 0x0000000010258FE4 in /usr/bin/python3 204: 53# _PyObject_MakeTpCall in /usr/bin/python3 204: 54# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 55# 0x0000000010162EE0 in /usr/bin/python3 204: 56# 0x00000000101B9704 in /usr/bin/python3 204: 57# 0x0000000010181FB4 in /usr/bin/python3 204: 58# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 59# 0x000000001030064C in /usr/bin/python3 204: 60# 0x0000000010258FE4 in /usr/bin/python3 204: 61# _PyObject_MakeTpCall in /usr/bin/python3 204: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 63# 0x0000000010162EE0 in /usr/bin/python3 204: 64# 0x00000000101B9704 in /usr/bin/python3 204: 65# 0x0000000010181FB4 in /usr/bin/python3 204: 66# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 67# 0x000000001030064C in /usr/bin/python3 204: 68# 0x0000000010258FE4 in /usr/bin/python3 204: 69# _PyObject_MakeTpCall in /usr/bin/python3 204: 70# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 71# 0x000000001016F888 in /usr/bin/python3 204: 72# _PyObject_MakeTpCall in /usr/bin/python3 204: 73# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 74# PyEval_EvalCode in /usr/bin/python3 204: 75# 0x000000001032E06C in /usr/bin/python3 204: 76# 0x000000001032844C in /usr/bin/python3 204: 77# 0x00000000103689CC in /usr/bin/python3 204: 78# 0x00000000103680D0 in /usr/bin/python3 204: 79# 0x0000000010367DA4 in /usr/bin/python3 204: 80# Py_RunMain in /usr/bin/python3 204: 81# 0x00000000102E95E8 in /usr/bin/python3 204: 82# Py_BytesMain in /usr/bin/python3 204: 83# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 84# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 204: [04:03:57] 204: 204: **** 204: Pre-condition Violation 204: no owner 204: Violation occurred on line 153 in file ./Code/GraphMol/Atom.h 204: Failed Expression: dp_mol 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::Atom::getOwningMol() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 3# RDKit::AtomGetBonds(RDKit::Atom*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 4# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 5# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 6# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 8# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 9# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 10# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 11# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 12# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 13# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 14# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 15# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 16# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 17# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 18# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 19# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 20# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 21# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 22# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 23# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 24# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 25# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 26# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 27# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 28# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 30# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 32# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 33# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 34# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 35# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 36# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 37# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 38# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 39# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 40# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 41# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 42# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 43# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 44# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 45# _PyObject_MakeTpCall in /usr/bin/python3 204: 46# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 47# 0x0000000010162EE0 in /usr/bin/python3 204: 48# 0x00000000101B9704 in /usr/bin/python3 204: 49# 0x0000000010181FB4 in /usr/bin/python3 204: 50# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 51# 0x000000001030064C in /usr/bin/python3 204: 52# 0x0000000010258FE4 in /usr/bin/python3 204: 53# _PyObject_MakeTpCall in /usr/bin/python3 204: 54# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 55# 0x0000000010162EE0 in /usr/bin/python3 204: 56# 0x00000000101B9704 in /usr/bin/python3 204: 57# 0x0000000010181FB4 in /usr/bin/python3 204: 58# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 59# 0x000000001030064C in /usr/bin/python3 204: 60# 0x0000000010258FE4 in /usr/bin/python3 204: 61# _PyObject_MakeTpCall in /usr/bin/python3 204: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 63# 0x0000000010162EE0 in /usr/bin/python3 204: 64# 0x00000000101B9704 in /usr/bin/python3 204: 65# 0x0000000010181FB4 in /usr/bin/python3 204: 66# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 67# 0x000000001030064C in /usr/bin/python3 204: 68# 0x0000000010258FE4 in /usr/bin/python3 204: 69# _PyObject_MakeTpCall in /usr/bin/python3 204: 70# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 71# 0x000000001016F888 in /usr/bin/python3 204: 72# _PyObject_MakeTpCall in /usr/bin/python3 204: 73# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 74# PyEval_EvalCode in /usr/bin/python3 204: 75# 0x000000001032E06C in /usr/bin/python3 204: 76# 0x000000001032844C in /usr/bin/python3 204: 77# 0x00000000103689CC in /usr/bin/python3 204: 78# 0x00000000103680D0 in /usr/bin/python3 204: 79# 0x0000000010367DA4 in /usr/bin/python3 204: 80# Py_RunMain in /usr/bin/python3 204: 81# 0x00000000102E95E8 in /usr/bin/python3 204: 82# Py_BytesMain in /usr/bin/python3 204: 83# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 84# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 204: [04:03:57] 204: 204: **** 204: Pre-condition Violation 204: no owner 204: Violation occurred on line 153 in file ./Code/GraphMol/Atom.h 204: Failed Expression: dp_mol 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::Atom::getOwningMol() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 3# RDKit::AtomIsInRing(RDKit::Atom const*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 4# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 5# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 6# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 8# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 9# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 10# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 11# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 12# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 13# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 14# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 15# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 16# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 17# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 18# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 19# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 20# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 21# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 22# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 23# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 24# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 25# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 26# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 27# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 28# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 30# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 32# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 33# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 34# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 35# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 36# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 37# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 38# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 39# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 40# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 41# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 42# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 43# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 44# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 45# _PyObject_MakeTpCall in /usr/bin/python3 204: 46# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 47# 0x0000000010162EE0 in /usr/bin/python3 204: 48# 0x00000000101B9704 in /usr/bin/python3 204: 49# 0x0000000010181FB4 in /usr/bin/python3 204: 50# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 51# 0x000000001030064C in /usr/bin/python3 204: 52# 0x0000000010258FE4 in /usr/bin/python3 204: 53# _PyObject_MakeTpCall in /usr/bin/python3 204: 54# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 55# 0x0000000010162EE0 in /usr/bin/python3 204: 56# 0x00000000101B9704 in /usr/bin/python3 204: 57# 0x0000000010181FB4 in /usr/bin/python3 204: 58# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 59# 0x000000001030064C in /usr/bin/python3 204: 60# 0x0000000010258FE4 in /usr/bin/python3 204: 61# _PyObject_MakeTpCall in /usr/bin/python3 204: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 63# 0x0000000010162EE0 in /usr/bin/python3 204: 64# 0x00000000101B9704 in /usr/bin/python3 204: 65# 0x0000000010181FB4 in /usr/bin/python3 204: 66# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 67# 0x000000001030064C in /usr/bin/python3 204: 68# 0x0000000010258FE4 in /usr/bin/python3 204: 69# _PyObject_MakeTpCall in /usr/bin/python3 204: 70# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 71# 0x000000001016F888 in /usr/bin/python3 204: 72# _PyObject_MakeTpCall in /usr/bin/python3 204: 73# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 74# PyEval_EvalCode in /usr/bin/python3 204: 75# 0x000000001032E06C in /usr/bin/python3 204: 76# 0x000000001032844C in /usr/bin/python3 204: 77# 0x00000000103689CC in /usr/bin/python3 204: 78# 0x00000000103680D0 in /usr/bin/python3 204: 79# 0x0000000010367DA4 in /usr/bin/python3 204: 80# Py_RunMain in /usr/bin/python3 204: 81# 0x00000000102E95E8 in /usr/bin/python3 204: 82# Py_BytesMain in /usr/bin/python3 204: 83# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 84# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 204: [04:03:57] 204: 204: **** 204: Pre-condition Violation 204: no owner 204: Violation occurred on line 153 in file ./Code/GraphMol/Atom.h 204: Failed Expression: dp_mol 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::Atom::getOwningMol() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 3# RDKit::AtomIsInRingSize(RDKit::Atom const*, int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 4# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 5# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 6# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 8# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 9# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 10# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 11# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 12# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 13# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 14# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 15# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 16# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 17# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 18# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 19# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 20# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 21# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 22# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 23# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 24# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 25# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 26# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 27# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 28# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 30# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 32# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 33# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 34# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 35# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 36# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 37# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 38# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 39# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 40# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 41# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 42# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 43# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 44# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 45# _PyObject_MakeTpCall in /usr/bin/python3 204: 46# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 47# 0x0000000010162EE0 in /usr/bin/python3 204: 48# 0x00000000101B9704 in /usr/bin/python3 204: 49# 0x0000000010181FB4 in /usr/bin/python3 204: 50# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 51# 0x000000001030064C in /usr/bin/python3 204: 52# 0x0000000010258FE4 in /usr/bin/python3 204: 53# _PyObject_MakeTpCall in /usr/bin/python3 204: 54# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 55# 0x0000000010162EE0 in /usr/bin/python3 204: 56# 0x00000000101B9704 in /usr/bin/python3 204: 57# 0x0000000010181FB4 in /usr/bin/python3 204: 58# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 59# 0x000000001030064C in /usr/bin/python3 204: 60# 0x0000000010258FE4 in /usr/bin/python3 204: 61# _PyObject_MakeTpCall in /usr/bin/python3 204: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 63# 0x0000000010162EE0 in /usr/bin/python3 204: 64# 0x00000000101B9704 in /usr/bin/python3 204: 65# 0x0000000010181FB4 in /usr/bin/python3 204: 66# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 67# 0x000000001030064C in /usr/bin/python3 204: 68# 0x0000000010258FE4 in /usr/bin/python3 204: 69# _PyObject_MakeTpCall in /usr/bin/python3 204: 70# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 71# 0x000000001016F888 in /usr/bin/python3 204: 72# _PyObject_MakeTpCall in /usr/bin/python3 204: 73# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 74# PyEval_EvalCode in /usr/bin/python3 204: 75# 0x000000001032E06C in /usr/bin/python3 204: 76# 0x000000001032844C in /usr/bin/python3 204: 77# 0x00000000103689CC in /usr/bin/python3 204: 78# 0x00000000103680D0 in /usr/bin/python3 204: 79# 0x0000000010367DA4 in /usr/bin/python3 204: 80# Py_RunMain in /usr/bin/python3 204: 81# 0x00000000102E95E8 in /usr/bin/python3 204: 82# Py_BytesMain in /usr/bin/python3 204: 83# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 84# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 204: .....[04:03:57] 204: 204: **** 204: Range Error 204: atomIdx1 204: Violation occurred on line 503 in file ./Code/GraphMol/RWMol.cpp 204: Failed Expression: 0 < 0 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::RWMol::addBond(unsigned int, unsigned int, RDKit::Bond::BondType) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 204: 3# RDKit::ReadWriteMol::AddBond(unsigned int, unsigned int, RDKit::Bond::BondType) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 4# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 5# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 6# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 8# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 9# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 10# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 11# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 12# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 13# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 14# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 15# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 16# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 17# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 18# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 19# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 20# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 21# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 22# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 23# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 24# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 25# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 26# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 27# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 28# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 29# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 30# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 31# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 32# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 33# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 34# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 35# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 36# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 37# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 38# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 39# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 40# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 41# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 42# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 43# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 44# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 45# _PyObject_MakeTpCall in /usr/bin/python3 204: 46# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 47# 0x0000000010162EE0 in /usr/bin/python3 204: 48# 0x00000000101B9704 in /usr/bin/python3 204: 49# 0x0000000010181FB4 in /usr/bin/python3 204: 50# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 51# 0x000000001030064C in /usr/bin/python3 204: 52# 0x0000000010258FE4 in /usr/bin/python3 204: 53# _PyObject_MakeTpCall in /usr/bin/python3 204: 54# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 55# 0x0000000010162EE0 in /usr/bin/python3 204: 56# 0x00000000101B9704 in /usr/bin/python3 204: 57# 0x0000000010181FB4 in /usr/bin/python3 204: 58# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 59# 0x000000001030064C in /usr/bin/python3 204: 60# 0x0000000010258FE4 in /usr/bin/python3 204: 61# _PyObject_MakeTpCall in /usr/bin/python3 204: 62# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 63# 0x0000000010162EE0 in /usr/bin/python3 204: 64# 0x00000000101B9704 in /usr/bin/python3 204: 65# 0x0000000010181FB4 in /usr/bin/python3 204: 66# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 67# 0x000000001030064C in /usr/bin/python3 204: 68# 0x0000000010258FE4 in /usr/bin/python3 204: 69# _PyObject_MakeTpCall in /usr/bin/python3 204: 70# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 71# 0x000000001016F888 in /usr/bin/python3 204: 72# _PyObject_MakeTpCall in /usr/bin/python3 204: 73# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 74# PyEval_EvalCode in /usr/bin/python3 204: 75# 0x000000001032E06C in /usr/bin/python3 204: 76# 0x000000001032844C in /usr/bin/python3 204: 77# 0x00000000103689CC in /usr/bin/python3 204: 78# 0x00000000103680D0 in /usr/bin/python3 204: 79# 0x0000000010367DA4 in /usr/bin/python3 204: 80# Py_RunMain in /usr/bin/python3 204: 81# 0x00000000102E95E8 in /usr/bin/python3 204: 82# Py_BytesMain in /usr/bin/python3 204: 83# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 84# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 204: ......[04:03:58] SMILES Parse Error: unclosed ring for input: 'c1ccccc' 204: [04:03:58] ERROR: Smiles parse error on line 0 204: [04:03:58] ERROR: Cannot create molecule from : 'c1ccccc' 204: [04:03:58] SMILES Parse Error: extra open parentheses while parsing: C(C 204: [04:03:58] SMILES Parse Error: check for mistakes around position 2: 204: [04:03:58] C(C 204: [04:03:58] ~^ 204: [04:03:58] SMILES Parse Error: Failed parsing SMILES 'C(C' for input: 'C(C' 204: [04:03:58] ERROR: Smiles parse error on line 3 204: [04:03:58] ERROR: Cannot create molecule from : 'C(C' 204: [04:03:58] Explicit valence for atom # 1 C, 5, is greater than permitted 204: [04:03:58] ERROR: Could not sanitize molecule on line 6 204: [04:03:58] ERROR: Explicit valence for atom # 1 C, 5, is greater than permitted 204: [04:03:58] SMILES Parse Error: unclosed ring for input: 'c1ccccc' 204: [04:03:58] ERROR: Smiles parse error on line 0 204: [04:03:58] ERROR: Cannot create molecule from : 'c1ccccc' 204: [04:03:58] SMILES Parse Error: extra open parentheses while parsing: C(C 204: [04:03:58] SMILES Parse Error: check for mistakes around position 2: 204: [04:03:58] C(C 204: [04:03:58] ~^ 204: [04:03:58] SMILES Parse Error: Failed parsing SMILES 'C(C' for input: 'C(C' 204: [04:03:58] ERROR: Smiles parse error on line 3 204: [04:03:58] ERROR: Cannot create molecule from : 'C(C' 204: [04:03:58] SMILES Parse Error: unclosed ring for input: 'C1C(Cl)CCCC' 204: [04:03:58] ERROR: Smiles parse error on line 6 204: [04:03:58] ERROR: Cannot create molecule from : 'C1C(Cl)CCCC' 204: [04:03:58] Explicit valence for atom # 1 F, 2, is greater than permitted 204: [04:03:58] ERROR: Could not sanitize molecule ending on line 21 204: [04:03:58] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted 204: [04:03:58] ERROR: EOF hit while reading atoms 204: [04:03:58] ERROR: moving to the beginning of the next molecule 204: [04:03:58] Explicit valence for atom # 1 F, 2, is greater than permitted 204: [04:03:58] ERROR: Could not sanitize molecule ending on line 21 204: [04:03:58] ERROR: Explicit valence for atom # 1 F, 2, is greater than permitted 204: [04:03:58] ERROR: EOF hit while reading atoms 204: [04:03:58] ERROR: moving to the beginning of the next molecule 204: ....[04:03:58] 204: 204: **** 204: Pre-condition Violation 204: RingInfo not initialized 204: Violation occurred on line 170 in file ./Code/GraphMol/RingInfo.cpp 204: Failed Expression: df_init 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::RingInfo::numRings() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 204: 3# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 5# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 15# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 17# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 19# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 21# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 23# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 25# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 27# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 29# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 31# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 32# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 33# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 34# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 35# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 36# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 37# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 38# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 39# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 40# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 41# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 42# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 43# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 44# _PyObject_MakeTpCall in /usr/bin/python3 204: 45# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 46# 0x0000000010162EE0 in /usr/bin/python3 204: 47# 0x00000000101B9704 in /usr/bin/python3 204: 48# 0x0000000010181FB4 in /usr/bin/python3 204: 49# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 50# 0x000000001030064C in /usr/bin/python3 204: 51# 0x0000000010258FE4 in /usr/bin/python3 204: 52# _PyObject_MakeTpCall in /usr/bin/python3 204: 53# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 54# 0x0000000010162EE0 in /usr/bin/python3 204: 55# 0x00000000101B9704 in /usr/bin/python3 204: 56# 0x0000000010181FB4 in /usr/bin/python3 204: 57# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 58# 0x000000001030064C in /usr/bin/python3 204: 59# 0x0000000010258FE4 in /usr/bin/python3 204: 60# _PyObject_MakeTpCall in /usr/bin/python3 204: 61# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 62# 0x0000000010162EE0 in /usr/bin/python3 204: 63# 0x00000000101B9704 in /usr/bin/python3 204: 64# 0x0000000010181FB4 in /usr/bin/python3 204: 65# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 66# 0x000000001030064C in /usr/bin/python3 204: 67# 0x0000000010258FE4 in /usr/bin/python3 204: 68# _PyObject_MakeTpCall in /usr/bin/python3 204: 69# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 70# 0x000000001016F888 in /usr/bin/python3 204: 71# _PyObject_MakeTpCall in /usr/bin/python3 204: 72# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 73# PyEval_EvalCode in /usr/bin/python3 204: 74# 0x000000001032E06C in /usr/bin/python3 204: 75# 0x000000001032844C in /usr/bin/python3 204: 76# 0x00000000103689CC in /usr/bin/python3 204: 77# 0x00000000103680D0 in /usr/bin/python3 204: 78# 0x0000000010367DA4 in /usr/bin/python3 204: 79# Py_RunMain in /usr/bin/python3 204: 80# 0x00000000102E95E8 in /usr/bin/python3 204: 81# Py_BytesMain in /usr/bin/python3 204: 82# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 83# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 204: ..............[04:03:58] 204: 204: **** 204: Range Error 204: idx 204: Violation occurred on line 209 in file ./Code/GraphMol/ROMol.cpp 204: Failed Expression: 3 < 1 204: ---------- 204: Stacktrace: 204: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 204: 2# RDKit::ROMol::getAtomWithIdx(unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitGraphMol.so.1 204: 3# boost::python::objects::caller_py_function_impl >, boost::mpl::vector3 > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 4# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 5# 0x00007FFFA269AD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 6# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 7# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdSLNParse.so 204: 8# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 9# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 10# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 11# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdChemReactions.so 204: 12# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 13# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdMolChemicalFeatures.so 204: 14# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 15# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdDepictor.so 204: 16# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 17# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 18# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 19# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdmolfiles.so 204: 20# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 21# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdCIPLabeler.so 204: 22# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 23# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 24# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 25# 0x00007FFFA01A7270 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 26# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 27# 0x00007FFFA01A71E0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 28# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 29# 0x00007FFFA01A7150 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 30# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 31# 0x00007FFFA01A70C0 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 32# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 33# 0x00007FFFA01A7030 in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/rdchem.so 204: 34# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 35# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 36# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 37# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 38# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 39# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 40# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 41# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 204: 42# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 43# 0x00007FFFA2696264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 204: 44# _PyObject_MakeTpCall in /usr/bin/python3 204: 45# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 46# 0x0000000010162EE0 in /usr/bin/python3 204: 47# 0x00000000101B9704 in /usr/bin/python3 204: 48# 0x0000000010181FB4 in /usr/bin/python3 204: 49# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 50# 0x000000001030064C in /usr/bin/python3 204: 51# 0x0000000010258FE4 in /usr/bin/python3 204: 52# _PyObject_MakeTpCall in /usr/bin/python3 204: 53# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 54# 0x0000000010162EE0 in /usr/bin/python3 204: 55# 0x00000000101B9704 in /usr/bin/python3 204: 56# 0x0000000010181FB4 in /usr/bin/python3 204: 57# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 58# 0x000000001030064C in /usr/bin/python3 204: 59# 0x0000000010258FE4 in /usr/bin/python3 204: 60# _PyObject_MakeTpCall in /usr/bin/python3 204: 61# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 62# 0x0000000010162EE0 in /usr/bin/python3 204: 63# 0x00000000101B9704 in /usr/bin/python3 204: 64# 0x0000000010181FB4 in /usr/bin/python3 204: 65# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 66# 0x000000001030064C in /usr/bin/python3 204: 67# 0x0000000010258FE4 in /usr/bin/python3 204: 68# _PyObject_MakeTpCall in /usr/bin/python3 204: 69# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 70# 0x000000001016F888 in /usr/bin/python3 204: 71# _PyObject_MakeTpCall in /usr/bin/python3 204: 72# _PyEval_EvalFrameDefault in /usr/bin/python3 204: 73# PyEval_EvalCode in /usr/bin/python3 204: 74# 0x000000001032E06C in /usr/bin/python3 204: 75# 0x000000001032844C in /usr/bin/python3 204: 76# 0x00000000103689CC in /usr/bin/python3 204: 77# 0x00000000103680D0 in /usr/bin/python3 204: 78# 0x0000000010367DA4 in /usr/bin/python3 204: 79# Py_RunMain in /usr/bin/python3 204: 80# 0x00000000102E95E8 in /usr/bin/python3 204: 81# Py_BytesMain in /usr/bin/python3 204: 82# 0x00007FFFA3427224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: 83# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 204: ---------- 204: **** 204: 204: ...[04:03:58] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 225: . 225: ---------------------------------------------------------------------- 225: Ran 1 test in 0.018s 225: 225: OK 149: CN1C(=O)CC[C@@]2(C)C1=CCc1cc(Cl)ccc12 218/246 Test #225: pyScaffoldNetworkPickling .............. Passed 0.50 sec test 226 Start 226: testMolEnumerator 226: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator/testMolEnumerator 226: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator 226: Test timeout computed to be: 7200 204: ............................[04:03:58] SMILES Parse Error: unclosed ring for input: 'C1CC' 204: ......491 204: ..[04:03:58] WARNING: not removing hydrogen atom without neighbors 204: [04:03:58] WARNING: not removing hydrogen atom with dummy atom neighbors 204: [04:03:58] WARNING: not removing hydrogen atom with wedged bond 204: [04:03:58] WARNING: not removing hydrogen atom without neighbors 204: [04:03:58] WARNING: not removing hydrogen atom with dummy atom neighbors 226: Randomness seeded to: 758850527 226: [04:03:58] can only enumerate SRUs with CONNECT=HT or CONNECT=HH 226: =============================================================================== 226: All tests passed (321 assertions in 16 test cases) 226: 219/246 Test #226: testMolEnumerator ...................... Passed 0.10 sec test 227 Start 227: pyMolEnumerator 227: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolEnumerator/Wrap/rough_test.py" 227: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolEnumerator/Wrap 227: Test timeout computed to be: 7200 204: ......[04:03:58] Explicit valence for atom # 1 F, 2, is greater than permitted 204: [04:03:58] Can't kekulize mol. Unkekulized atoms: 0 1 2 204: .[04:03:58] Explicit valence for atom # 1 F, 2, is greater than permitted 204: [04:03:58] Explicit valence for atom # 1 F, 2, is greater than permitted 204: [04:03:58] Explicit valence for atom # 1 F, 2, is greater than permitted 204: [04:03:58] Explicit valence for atom # 1 F, 2, is greater than permitted 204: [04:03:58] Can't kekulize mol. Unkekulized atoms: 0 1 2 204: [04:03:58] Can't kekulize mol. Unkekulized atoms: 0 1 2 204: [04:03:58] Can't kekulize mol. Unkekulized atoms: 0 1 2 227: ... 227: ---------------------------------------------------------------------- 227: Ran 3 tests in 0.009s 227: 227: OK 149: Cc1nc(COc2ccc3c(c2)[C@@H](O)[C@@H](Cc2cccnc2)CO3)ccc1[N+](=O)[O-] 220/246 Test #227: pyMolEnumerator ........................ Passed 0.20 sec test 228 Start 228: testAbbreviations 228: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations/testAbbreviations 228: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations 228: Test timeout computed to be: 7200 204: ..........[04:03:58] SMARTS Parse Error: syntax error while parsing: CCC |$foo;;bar$| ourname 204: [04:03:58] SMARTS Parse Error: check for mistakes around position 4: 204: [04:03:58] CCC |$foo;;bar$| ourname 204: [04:03:58] ~~~^ 204: [04:03:58] SMARTS Parse Error: Failed parsing SMARTS 'CCC |$foo;;bar$| ourname' for input: 'CCC |$foo;;bar$| ourname' 204: .[04:03:58] SMILES Parse Error: syntax error while parsing: CCC |$foo;;bar$| ourname 204: [04:03:58] SMILES Parse Error: check for mistakes around position 4: 204: [04:03:58] CCC |$foo;;bar$| ourname 204: [04:03:58] ~~~^ 204: [04:03:58] SMILES Parse Error: Failed parsing SMILES 'CCC |$foo;;bar$| ourname' for input: 'CCC |$foo;;bar$| ourname' 204: ..[04:03:58] SMILES Parse Error: syntax error while parsing: error 204: [04:03:58] SMILES Parse Error: check for mistakes around position 1: 204: [04:03:58] error 204: [04:03:58] ^ 204: [04:03:58] SMILES Parse Error: Failed parsing SMILES 'error' for input: 'error' 204: [04:03:58] SMILES Parse Error: Failed parsing SMILES 'd' for input: 'd' 204: [04:03:58] SMARTS Parse Error: Failed parsing SMARTS 'error' for input: 'error' 204: [04:03:58] SMARTS Parse Error: Failed parsing SMARTS 'd' for input: 'd' 228: Randomness seeded to: 2711175186 228: [04:03:58] SMARTS Parse Error: syntax error while parsing: *fail 228: [04:03:58] SMARTS Parse Error: check for mistakes around position 2: 228: [04:03:58] *fail 228: [04:03:58] ~^ 228: [04:03:58] SMARTS Parse Error: Failed parsing SMARTS '*fail' for input: '*fail' 228: [04:03:58] no suitable SubstanceGroups found 228: =============================================================================== 228: All tests passed (195 assertions in 12 test cases) 228: 221/246 Test #228: testAbbreviations ...................... Passed 0.03 sec test 229 Start 229: pyAbbreviations 229: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/Abbreviations/Wrap/testAbbreviations.py" 229: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/Abbreviations/Wrap 229: Test timeout computed to be: 7200 204: .........................[04:03:58] SMILES Parse Error: syntax error while parsing: garbage_0 204: [04:03:58] SMILES Parse Error: check for mistakes around position 1: 204: [04:03:58] garbage_0 204: [04:03:58] ^ 204: [04:03:58] SMILES Parse Error: Failed parsing SMILES 'garbage_0' for input: 'garbage_0' 204: [04:03:58] SMILES Parse Error: syntax error while parsing: garbage_2 204: [04:03:58] SMILES Parse Error: check for mistakes around position 1: 204: [04:03:58] garbage_2 204: [04:03:58] ^ 204: [04:03:58] SMILES Parse Error: Failed parsing SMILES 'garbage_2' for input: 'garbage_2' 204: [04:03:58] SMILES Parse Error: syntax error while parsing: garbage_4 204: [04:03:58] SMILES Parse Error: check for mistakes around position 1: 204: [04:03:58] garbage_4 204: [04:03:58] ^ 204: [04:03:58] SMILES Parse Error: Failed parsing SMILES 'garbage_4' for input: 'garbage_4' 204: ............ 204: ---------------------------------------------------------------------- 204: Ran 284 tests in 13.846s 204: 204: OK 204: supplier: 204: supplier: 204: supplier: 222/246 Test #204: pyGraphMolWrap ......................... Passed 14.49 sec test 230 Start 230: generalizedSubstructCatch 230: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct/generalizedSubstructCatch 230: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct 230: Test timeout computed to be: 7200 229: ....... 229: ---------------------------------------------------------------------- 229: Ran 7 tests in 0.025s 229: 229: OK 223/246 Test #229: pyAbbreviations ........................ Passed 0.40 sec test 231 Start 231: pyGeneralizedSubstruct 231: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/GeneralizedSubstruct/Wrap/testGeneralizedSubstruct.py" 231: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/GeneralizedSubstruct/Wrap 231: Test timeout computed to be: 7200 230: Randomness seeded to: 3994046548 230: =============================================================================== 230: All tests passed (486 assertions in 10 test cases) 230: 224/246 Test #230: generalizedSubstructCatch .............. Passed 0.33 sec test 232 Start 232: testMolProcessing 232: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing/testMolProcessing 232: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing 232: Test timeout computed to be: 7200 231: ....... 231: ---------------------------------------------------------------------- 231: Ran 7 tests in 0.427s 231: 231: OK 225/246 Test #231: pyGeneralizedSubstruct ................. Passed 0.94 sec test 233 Start 233: pyMolProcessing 233: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolProcessing/Wrap/testMolProcessing.py" 233: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolProcessing/Wrap 233: Test timeout computed to be: 7200 233: .. 233: ---------------------------------------------------------------------- 233: Ran 2 tests in 0.360s 233: 233: OK 226/246 Test #233: pyMolProcessing ........................ Passed 0.70 sec test 234 Start 234: testMIF 234: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields/testMIF 234: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields 234: Test timeout computed to be: 7200 234: Randomness seeded to: 930664799 234: =============================================================================== 234: All tests passed (27926 assertions in 8 test cases) 234: 227/246 Test #234: testMIF ................................ Passed 0.11 sec test 235 Start 235: pyMIF 235: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/GraphMol/MolInteractionFields/Wrap/testMIF.py" 235: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/GraphMol/MolInteractionFields/Wrap 235: Test timeout computed to be: 7200 179: .[04:04:00] Timed out. 179: [04:04:00] Timed out. 179: . 179: ---------------------------------------------------------------------- 179: Ran 10 tests in 63.026s 179: 179: OK 228/246 Test #179: pySynthonSpaceSearch ................... Passed 63.75 sec test 236 Start 236: testQuery 236: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Query/testQuery 236: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Query 236: Test timeout computed to be: 7200 236: Randomness seeded to: 3121234295 236: =============================================================================== 236: All tests passed (111 assertions in 16 test cases) 236: 229/246 Test #236: testQuery .............................. Passed 0.01 sec test 237 Start 237: testBaseFeatures 237: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Features/testBaseFeatures 237: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/Features 237: Test timeout computed to be: 7200 237: Randomness seeded to: 718379601 237: =============================================================================== 237: All tests passed (61 assertions in 3 test cases) 237: 230/246 Test #237: testBaseFeatures ....................... Passed 0.02 sec test 238 Start 238: testMatCalc 238: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc/testMatCalc 238: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc 238: Test timeout computed to be: 7200 238: 1.68022e+08 238: 1.73149e+08 238: 1.05549e+08 238: 7.20603e+07 238: 1.41535e+08 238: 1.08592e+08 238: 1.11334e+08 238: 2.05553e+08 238: 1.54962e+08 238: 8.08231e+07 238: 5.61421e+07 238: 1.28874e+08 238: 1.59011e+08 238: 8.69902e+07 238: 1.31367e+08 238: 2.27389e+08 238: 1.60289e+08 238: 7.79813e+07 238: 1.61001e+08 238: 2.07599e+08 238: 2.24432e+08 238: 1.39725e+08 238: 2.42614e+08 238: 1.77578e+08 238: 1.05908e+08 238: 9.06742e+07 238: 1.8087e+08 238: 1.98182e+08 238: 2.03052e+08 238: 1.7673e+08 238: 9.32798e+07 238: 1.37969e+08 238: 1.83778e+08 238: 2.1228e+08 238: 5.06157e+07 238: 1.566e+08 238: 2.37142e+08 238: 1.49345e+08 238: 7.05819e+07 238: 1.71633e+08 238: 1.96817e+08 238: 2.18246e+08 238: 9.49496e+07 238: 2.25618e+08 238: 1.30219e+08 231/246 Test #238: testMatCalc ............................ Passed 0.01 sec test 239 Start 239: pyMatCalc 239: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py" 239: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap 239: Test timeout computed to be: 7200 235: ....... 235: ---------------------------------------------------------------------- 235: Ran 7 tests in 0.161s 235: 235: OK 235: Testing MIF wrapper 232/246 Test #235: pyMIF .................................. Passed 0.71 sec test 240 Start 240: testSimDivPickers 240: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/testSimDivPickers 240: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers 240: Test timeout computed to be: 7200 240: Randomness seeded to: 1165373694 240: =============================================================================== 240: All tests passed (13 assertions in 2 test cases) 240: 233/246 Test #240: testSimDivPickers ...................... Passed 0.02 sec test 241 Start 241: pickersTestsCatch 241: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/pickersTestsCatch 241: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers 241: Test timeout computed to be: 7200 241: Randomness seeded to: 1286585804 241: =============================================================================== 241: All tests passed (21267 assertions in 1 test case) 241: 234/246 Test #241: pickersTestsCatch ...................... Passed 0.16 sec test 242 Start 242: pySimDivPickers 242: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/SimDivPickers/Wrap/testPickers.py" 242: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/SimDivPickers/Wrap 242: Test timeout computed to be: 7200 232: Randomness seeded to: 3916847879 232: =============================================================================== 232: All tests passed (203 assertions in 1 test case) 232: 235/246 Test #232: testMolProcessing ...................... Passed 2.73 sec test 243 Start 243: pyRanker 243: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/ML/InfoTheory/Wrap/testRanker.py" 243: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ML/InfoTheory/Wrap 243: Test timeout computed to be: 7200 239: ..... 239: ---------------------------------------------------------------------- 239: Ran 5 tests in 0.621s 239: 239: OK 242: [04:04:02] the useCache argument is deprecated and ignored 236/246 Test #239: pyMatCalc .............................. Passed 1.11 sec test 244 Start 244: testChemicalFeatures 244: Test command: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures/testChemicalFeatures 244: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures 244: Test timeout computed to be: 7200 244: Randomness seeded to: 438942595 244: =============================================================================== 244: All tests passed (24 assertions in 1 test case) 244: 237/246 Test #244: testChemicalFeatures ................... Passed 0.02 sec test 245 Start 245: pyFeatures 245: Test command: /usr/bin/python3 "/build/reproducible-path/rdkit-202503.6/Code/ChemicalFeatures/Wrap/testFeatures.py" 245: Working Directory: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/Code/ChemicalFeatures/Wrap 245: Test timeout computed to be: 7200 243: ..[04:04:02] 243: 243: **** 243: Invariant Violation 243: Can't rank more bits than the ensemble size 243: Violation occurred on line 156 in file ./Code/ML/InfoTheory/InfoBitRanker.cpp 243: Failed Expression: num <= dp_maskBits->getNumOnBits() 243: ---------- 243: Stacktrace: 243: 0# Invar::Invariant::toString[abi:cxx11]() const in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 243: 1# Invar::operator<<(std::ostream&, Invar::Invariant const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitRDGeneral.so.1 243: 2# RDInfoTheory::InfoBitRanker::getTopN(unsigned int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu//lib/libRDKitInfoTheory.so.1 243: 3# RDInfoTheory::getTopNbits(RDInfoTheory::InfoBitRanker*, int) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/ML/InfoTheory/rdInfoTheory.so 243: 4# boost::python::objects::caller_py_function_impl > >::operator()(_object*, _object*) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/ML/InfoTheory/rdInfoTheory.so 243: 5# boost::python::objects::function::call(_object*, _object*) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 243: 6# 0x00007FFF81BBAD20 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 243: 7# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 243: 8# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 243: 9# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 243: 10# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 243: 11# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 243: 12# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 243: 13# boost::python::detail::exception_handler::operator()(boost::function0 const&) const in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 243: 14# boost::detail::function::function_obj_invoker2, boost::_bi::list3, boost::arg<2>, boost::_bi::value > >, bool, boost::python::detail::exception_handler const&, boost::function0 const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0 const&) in /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/rdBase.so 243: 15# boost::python::handle_exception_impl(boost::function0) in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 243: 16# 0x00007FFF81BB6264 in /usr/lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0 243: 17# _PyObject_MakeTpCall in /usr/bin/python3 243: 18# _PyEval_EvalFrameDefault in /usr/bin/python3 243: 19# 0x0000000010162EE0 in /usr/bin/python3 243: 20# 0x00000000101B9704 in /usr/bin/python3 243: 21# 0x0000000010181FB4 in /usr/bin/python3 243: 22# _PyEval_EvalFrameDefault in /usr/bin/python3 243: 23# 0x000000001030064C in /usr/bin/python3 243: 24# 0x0000000010258FE4 in /usr/bin/python3 243: 25# _PyObject_MakeTpCall in /usr/bin/python3 243: 26# _PyEval_EvalFrameDefault in /usr/bin/python3 243: 27# 0x0000000010162EE0 in /usr/bin/python3 243: 28# 0x00000000101B9704 in /usr/bin/python3 243: 29# 0x0000000010181FB4 in /usr/bin/python3 243: 30# _PyEval_EvalFrameDefault in /usr/bin/python3 243: 31# 0x000000001030064C in /usr/bin/python3 243: 32# 0x0000000010258FE4 in /usr/bin/python3 243: 33# _PyObject_MakeTpCall in /usr/bin/python3 243: 34# _PyEval_EvalFrameDefault in /usr/bin/python3 243: 35# 0x0000000010162EE0 in /usr/bin/python3 243: 36# 0x00000000101B9704 in /usr/bin/python3 243: 37# 0x0000000010181FB4 in /usr/bin/python3 243: 38# _PyEval_EvalFrameDefault in /usr/bin/python3 243: 39# 0x000000001030064C in /usr/bin/python3 243: 40# 0x0000000010258FE4 in /usr/bin/python3 243: 41# _PyObject_MakeTpCall in /usr/bin/python3 243: 42# _PyEval_EvalFrameDefault in /usr/bin/python3 243: 43# 0x000000001016F888 in /usr/bin/python3 243: 44# _PyObject_MakeTpCall in /usr/bin/python3 243: 45# _PyEval_EvalFrameDefault in /usr/bin/python3 243: 46# PyEval_EvalCode in /usr/bin/python3 243: 47# 0x000000001032E06C in /usr/bin/python3 243: 48# 0x000000001032844C in /usr/bin/python3 243: 49# 0x00000000103689CC in /usr/bin/python3 243: 50# 0x00000000103680D0 in /usr/bin/python3 243: 51# 0x0000000010367DA4 in /usr/bin/python3 243: 52# Py_RunMain in /usr/bin/python3 243: 53# 0x00000000102E95E8 in /usr/bin/python3 243: 54# Py_BytesMain in /usr/bin/python3 243: 55# 0x00007FFF83E27224 in /usr/lib/powerpc64le-linux-gnu/libc.so.6 243: 56# __libc_start_main in /usr/lib/powerpc64le-linux-gnu/libc.so.6 243: ---------- 243: **** 243: 243: ... 243: ---------------------------------------------------------------------- 243: Ran 5 tests in 0.053s 243: 243: OK 238/246 Test #243: pyRanker ............................... Passed 0.40 sec test 246 Start 246: pythonProjectTests 246: Test command: /usr/bin/python3 "-m" "pytest" 246: Working Directory: /build/reproducible-path/rdkit-202503.6/Projects 246: Test timeout computed to be: 7200 242: ...[04:04:02] the useCache argument is deprecated and ignored 242: [04:04:02] the useCache argument is deprecated and ignored 242: .[04:04:02] the useCache argument is deprecated and ignored 245: .. 245: ---------------------------------------------------------------------- 245: Ran 2 tests in 0.003s 245: 245: OK 245: Testing ChemicalFeatures Wrapper code: 239/246 Test #245: pyFeatures ............................. Passed 0.43 sec 242: ....... 242: ---------------------------------------------------------------------- 242: Ran 11 tests in 1.182s 242: 242: OK 240/246 Test #242: pySimDivPickers ........................ Passed 1.59 sec 246: ============================= test session starts ============================== 246: platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 246: rootdir: /build/reproducible-path/rdkit-202503.6/Projects 246: configfile: pytest.ini 246: collected 12 items 246: 220: [04:04:05] Explicit valence for atom # 0 Br, 1, is greater than permitted 220: =============================================================================== 220: All tests passed (38344 assertions in 51 test cases) 220: 241/246 Test #220: molStandardizeCatchTest ................ Passed 18.13 sec 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 8 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 29 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 49 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 70 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 89 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 111 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 132 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 153 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 175 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 195 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 215 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 236 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 256 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 278 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 297 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 319 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 339 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 360 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 380 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 402 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 422 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 443 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 464 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 484 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 505 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 525 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 547 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 566 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 586 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 605 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 624 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 645 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 666 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 686 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 707 150: [04:04:06] UFFTYPER: Warning: hybridization set to SP3 for atom 729 150: =============================================================================== 150: All tests passed (12767 assertions in 24 test cases) 150: 242/246 Test #150: distGeomHelpersCatch ................... Passed 133.15 sec 149: [04:04:07] Molecule does not have explicit Hs. Consider calling AddHs() 149: [04:03:59] --------------------------------- 149: [04:03:59] test github issue 696: Bad 1-4 bounds matrix elements in highly constrained system 149: [04:03:59] --------------------------------- 149: [04:03:59] More ChEMBL molecules failing bounds smoothing. 149: [04:03:59] --------------------------------- 149: [04:03:59] ugly conformations can be generated for highly constrained ring systems. 149: [04:03:59] --------------------------------- 149: [04:03:59] test embed parameters structure. 149: [04:03:59] --------------------------------- 149: [04:03:59] test github 1227: Hs being used in RMSD filtering. 149: [04:03:59] --------------------------------- 149: [04:03:59] Failure to embed larger aromatic rings. 149: [04:04:02] --------------------------------- 149: [04:04:02] Deterministic with large random seeds 149: [04:04:05] --------------------------------- 149: [04:04:05] Github #1990: seg fault after RemoveHs 149: [04:04:05] --------------------------------- 149: [04:04:05] Github #2246: Use coordMap when starting embedding from random coords 149: [04:04:07] --------------------------------- 149: [04:04:07] Providing a distance bounds matrix. 149: [04:04:07] --------------------------------- 149: [04:04:07] Disabling fragmentation. 149: [04:04:07] --------------------------------- 149: [04:04:07] Using symmetry in conformation pruning. 149: [04:04:07] --------------------------------- 149: [04:04:07] Force trans amides. 149: [04:04:07] --------------------------------- 149: [04:04:07] test missing Hs warning. 149: [04:04:07] --------------------------------- 149: [04:04:07] basic H bond support. 149: [04:04:07] ******************************************************* 243/246 Test #149: testDistGeomHelpers .................... Passed 133.40 sec 174: =============================================================================== 174: All tests passed (93 assertions in 5 test cases) 174: 244/246 Test #174: testRascalCluster ...................... Passed 98.28 sec 246: DbCLI/UnitTestDbCLI.py ............ [100%] 246: 246: =============================== warnings summary =============================== 246: ../obj-powerpc64le-linux-gnu/rdkit/Chem/MolDb/Loader_sa.py:20 246: /build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu/rdkit/Chem/MolDb/Loader_sa.py:20: MovedIn20Warning: The ``declarative_base()`` function is now available as sqlalchemy.orm.declarative_base(). (deprecated since: 2.0) (Background on SQLAlchemy 2.0 at: https://sqlalche.me/e/b8d9) 246: decBase = declarative_base() 246: 246: -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 246: ======================== 12 passed, 1 warning in 17.13s ======================== 245/246 Test #246: pythonProjectTests ..................... Passed 17.93 sec 5: Randomness seeded to: 2314994494 5: =============================================================================== 5: All tests passed (120009 assertions in 2 test cases) 5: 246/246 Test #5: testConcurrentQueue .................... Passed 175.13 sec 100% tests passed, 0 tests failed out of 246 Total Test time (real) = 175.19 sec make[2]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/rdkit-202503.6' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/rdkit-202503.6' dh_auto_install cd obj-powerpc64le-linux-gnu && make -j8 install DESTDIR=/build/reproducible-path/rdkit-202503.6/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/rdkit-202503.6 -B/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataManip -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataManip/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataManip/Metric -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataManip/Metric/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/Node.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/Filter.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/Output.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/Supply.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/Transform.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib/SDSupply.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib/demo.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/RDRandom.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Descriptors.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Descriptors3D.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/fmcs -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/fmcs/fmcs -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/fmcs/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/fmcs/fmcs.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FragmentCatalog.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/EnumerateStereoisomers.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/BuildFragmentCatalog.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/PropertyMol.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/TorsionFingerprints.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/inchi.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/nbtests -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/nbtests/rdkit-structure-renderer.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/nbtests/ChEMBL_quinolones.tsv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/nbtests/github4823.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FunctionalGroups.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ReducedGraphs.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FeatMaps -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FeatMaps/FeatMapParser.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FeatMaps/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FeatMaps/FeatMaps.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FeatMaps/FeatMapPoint.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FeatMaps/FeatMapUtils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ChemicalForceFields.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/SimpleEnum -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/SimpleEnum/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/SimpleEnum/Enumerator.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FeatFinderCLI.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolSurf.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Features -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Features/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Features/ShowFeats.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Features/FeatDirUtilsRD.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/PyMol.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Randomize.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ChemUtils -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ChemUtils/DescriptorUtilities.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ChemUtils/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ChemUtils/SDFToCSV.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ChemUtils/TemplateExpand.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ChemUtils/BulkTester.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ChemUtils/AlignDepict.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolKey -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolKey/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolKey/MolKey.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolKey/InchiInfo.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ShowMols.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/TemplateAlign.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolStandardize -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolStandardize/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolCatalog.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fraggle -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fraggle/FraggleSim.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fraggle/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FilterCatalog.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/PandasPatcher.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FastSDMolSupplier.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/GraphDescriptors.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Lipinski.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/ChemicalFeatures.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/FragmentMatcher.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/SpacialScore.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/RegistrationHash.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolDb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolDb/Loader_orig.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolDb/Loader.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolDb/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolDb/Loader_sa.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolDb/FingerprintUtils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Graphs.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/SATIS.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/AtomPairs -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/AtomPairs/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/AtomPairs/Utils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/AtomPairs/Pairs.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/AtomPairs/Sheridan.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/AtomPairs/Torsions.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm2D -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm2D/LazyGenerator.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm2D/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm2D/Utils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm2D/Generate.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm2D/SigFactory.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm2D/Matcher.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Recap.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fragments.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MACCSkeys.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Subshape -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Subshape/BuilderUtils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Subshape/demoCombined.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Subshape/SubshapeAligner.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Subshape/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Subshape/SubshapeBuilder.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Subshape/SubshapeObjects.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MCS.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/AllChem.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/EnumerateHeterocycles.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Scaffolds -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Scaffolds/MurckoScaffold.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Scaffolds/ScaffoldNetwork.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Scaffolds/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/SaltRemover.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/QED.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Crippen.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/EState -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/EState/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/EState/Fingerprinter.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/EState/AtomTypes.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/EState/EState.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/EState/EState_VSA.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/PandasTools.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Suppliers -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Suppliers/DbMolSupplier.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Suppliers/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Suppliers/MolSupplier.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fingerprints -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fingerprints/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fingerprints/ClusterMols.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fingerprints/MolSimilarity.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Fingerprints/FingerprintMols.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm3D -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm3D/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm3D/Pharmacophore.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm3D/EmbedLib.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/DSViewer.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/BRICS.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Draw -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Draw/InteractiveRenderer.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Draw/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Draw/FreeSans.ttf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Draw/IPythonConsole.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Draw/MolDrawing.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Draw/SimilarityMaps.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/files.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/InfoTheory -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/InfoTheory/BitClusterer.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/InfoTheory/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/InfoTheory/BitRank.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/InfoTheory/entropy.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Scoring -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Scoring/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Scoring/Scoring.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Descriptors -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Descriptors/Descriptors.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Descriptors/Parser.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Descriptors/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Descriptors/CompoundDescriptors.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Data -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Data/MLData.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Data/Transforms.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Data/Quantize.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Data/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Data/Stats.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Data/SplitData.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Data/DataUtils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Data/FindQuantBounds.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster/Clusters.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster/Standardize.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster/Murtagh.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster/Resemblance.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster/murtagh_test.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster/Butina.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster/ClusterVis.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster/ClusterUtils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/SLT -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/SLT/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/SLT/Risk.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/MLUtils -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/MLUtils/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/MLUtils/VoteImg.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/MatOps.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ForceField -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ForceField/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/conftest.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/pytest.ini -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Dbase -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Dbase/DbUtils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Dbase/DbModule.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Dbase/DbInfo.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Dbase/DbResultSet.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Dbase/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Dbase/DbConnection.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Dbase/StorageUtils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataStructs -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataStructs/HierarchyVis.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataStructs/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataStructs/LazySignature.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataStructs/BitEnsemble.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataStructs/BitUtils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataStructs/VectCollection.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataStructs/BitEnsembleDb.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataStructs/TopNContainer.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Geometry -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Geometry/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Avalon -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Avalon/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/TestRunner.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/utils -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/utils/retest.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/utils/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/utils/chemdraw_qax.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/utils/chemutils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/utils/chemdraw.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/utils/fileutils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/utils/spiral.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/utils/cactvs.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/utils/listutils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Numerics -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Numerics/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/SimDivFilters -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/SimDivFilters/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/SimDivFilters/SimilarityPickers.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DistanceGeometry -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DistanceGeometry/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/RDConfig.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/pid.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/README -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/TK -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/TK/pidTK.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/TK/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/colors.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PS -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PS/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PS/pidPS.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PS/psmetrics.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PS/fontinfo.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PS/latin1MetricsCache.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/examples -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/examples/formatted-strings.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/util -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/util/HTMLPiddler.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/util/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/patches -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/patches/Imaging-1.1.1.diff -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/Qt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/Qt/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/Qt/pidQt.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/Qt/pidQt4.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/SVG -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/SVG/pidSVG.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/SVG/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PDF -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PDF/pdfmetrics.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PDF/pdfgeom.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PDF/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PDF/pdfgen.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PDF/pdfutils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PDF/pidPDF.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PDF/pdfdoc.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/ReportLab -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/ReportLab/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/ReportLab/pidReportLab.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/Pyart -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/Pyart/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/Pyart/Fontmapping.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/Pyart/pidPyart.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/stringformat.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pidPIL.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-10.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-12.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-24.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-10.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-24.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-12.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-14.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-18.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-24.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/metrics.dat -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-10.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-18.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-12.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-10.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-24.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-10.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-14.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-14.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-12.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-18.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/removemedium.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-8.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-14.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pil.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-14.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-24.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-10.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-8.pil -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/times-18.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pbm -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/tests -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/tests/pstests.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/tests/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/tests/pidtest.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/tests/testallps.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/WX -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/WX/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/WX/pidWX.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/WX/pidWxDc.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/utils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/sping/pagesizes.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/RDLogger.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/RDTests.sqlt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Functional_Group_Hierarchy.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Crippen.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/struchk -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.opt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.chk -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.trn -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/FragmentDescriptors.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Fonts -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Fonts/font_dumper.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Fonts/amadeus_font_license.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Fonts/roboto_regular_license.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Fonts/Telex-Regular.ttf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Fonts/telex_font_license.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Fonts/Amadeus.ttf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/RDData.sqlt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Salts.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/DTDs -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/DTDs/RD_Model.dtd -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/DTDs/RD_Dataset.dtd -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/DTDs/validate.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/BaseFeatures.fdef -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Pains -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Pains/test_data -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Pains/test_data/wehi_mols.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Pains/test_data/run_tests.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Pains/test_data/test_set3.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Pains/wehi_pains.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/Pains/README.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/NCI -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/NCI/first_200.tpsa.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/NCI/first_200.props.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/NCI/first_5k.tpsa.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/NCI/first_5K.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/SmartsLib -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/SmartsLib/patty_rules.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/fps.1000.counts.pkl.gz -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/mols.1000.pkl.gz -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/bench2.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/SmartsLib/RLewis_smarts.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/FunctionalGroups.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Data/rddata.sql -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/RD.css -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GA.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-StereoChemTest.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-DummyCores.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-Tests.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/MolStandardize.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GenericCores.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Notebooks/compounds.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/EnhancedStereo.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/Chem -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_expand.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_trans_base.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_expand.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_expand.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_base.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/SGroups.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/gsocGeneralFileReader.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Code/CIPLabeling.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/terminology_jp.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/The_RDKit_Book_jp.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/Makefile -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/Supplementary_Text_jp.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/Backwards_incompatible_changes_jp.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/index.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/introduction_jp.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/Getting_Started_with_RDKit_in_Python_jp.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_43.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_36.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_31.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_53.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_40.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_52.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_11.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_12.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_49.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_5.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_19.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_48.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_57.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_37.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_44.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_33.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_29.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_55.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_18.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_20.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_56.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_22.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_7.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_61.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_14.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_4.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_32.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_21.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_45.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_41.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_23.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_62.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_35.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_25.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_59.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_39.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_17.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_8.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_51.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_54.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_34.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_58.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_24.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_15.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_42.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_50.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_13.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_38.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_6.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_46.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_27.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_9.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_28.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_60.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_30.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_10.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_26.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_16.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_47.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/The_RDKit_database_cartridge_jp.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/Installation_jp.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/An_overview_of_the_RDKit_jp.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/RDKit_cookbook_jp.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book_jp/conf.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Images -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Images/wiki -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Images/logo.inkscape.svg -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Images/logo.lrg.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Images/logo.ai -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Images/logo.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/RDKit_Book.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/Makefile -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.test.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/DnaTest3.mol -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/README.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/CrossLink.mol -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/input.mol -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/s1p_chembldoc89753.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/chiral.mol -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/invalid.mol -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf.gz -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/test_multi_colours.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.train.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/AmideBond.rxn -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/MinimalFeatures.fdef -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/5ht3ligs.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/data/cdk2.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_17_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_30_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/parastereo_1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/pull_req1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/reaction1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/rdk_bit1553.svg -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_2_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_37_im2.svg -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_crippen.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molG.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im6.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_17_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_3_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_20_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_39_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_34_im2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_representation2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_7.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/query_bonds.2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_23_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/mfp2_bit872.svg -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_rf.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_0_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_11.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im4.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/pull_req2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example4.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_36_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_40_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/query_bonds.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_6_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_37_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_6_im2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im5.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_32_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_labels_2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_tb2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_oh2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_30_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_36_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_23_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/WobbleRna.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_0_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_15_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molE.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_6_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/stereo_annotation.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_8_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_5.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_2_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_35_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_13_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_ex1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_29_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_40_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_example5.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_6.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_13_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_33_im2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_4.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_19_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_33_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_34_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/indole1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_highlights_1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_12.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/rdk_bit1553_2.svg -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molB.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molC.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_oh1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/rdkit_fork_clone.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_tb1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/substruct_search_parameters1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_missing1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_highlights_2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_28_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molF.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_5.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_6.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_labels_3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_34_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_ex2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_22_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_28_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_0_im2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_33_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/mol_metadata1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_4.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/query_atoms.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molA.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/style.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im5.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molD.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_highlights_3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/mcs_example_3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp4.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_9.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_38_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_8.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_labels_1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/reaction1_highlight.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/nontetstereo_sp1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/ary_group.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/DnaDoubleStrand.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_22_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.jpg -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/Cc1ccccc1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_1_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_20_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atom_annotation_1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im3.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_7_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_37_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_32_im1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_charges.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/atrop_representation1.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_21_im4.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/PeptideConversion.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/parastereo_2.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/images/RDKitCB_15_im0.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example7.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example16.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example17.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example2.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example5.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example10.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example13.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example12.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example4.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example1.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example11.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example8.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example14.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/CMakeLists.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example9.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example6.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example3.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example15.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/FindMyRDKit.cmake -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.ClusterMols.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Node.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdReducedGraphs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Output.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.MolDrawing.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MatOps.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCIPLabeler.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.SimilarityMaps.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdinchi.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.inchi.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolops.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.TopNContainer.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clusters.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdEHTTools.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Graphs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.entropy.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.SplitData.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.chemutils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Transforms.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.TemplateExpand.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdchem.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Resemblance.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.FingerprintUtils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.spiral.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MACCSkeys.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsemble.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapParser.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.MurckoScaffold.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.MolSupplier.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsMolFilter.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FastSDMolSupplier.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapUtils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.MolKey.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDistGeom.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.BulkTester.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Supply.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsRemover.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.DataUtils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FunctionalGroups.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Stats.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitRank.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SpacialScore.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Murtagh.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeAligner.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PropertyMol.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PyMol.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.SimilarityScreener.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.EmbedLib.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.BuilderUtils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Lipinski.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolProcessing.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitUtils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsembleDb.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Crippen.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDConfig.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2D.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Sheridan.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PandasTools.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolfiles.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.DbFpSupplier.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors3D.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfragcatalog.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.IPythonConsole.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalForceFields.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbInfo.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolCatalog.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFingerprintGenerator.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFreeSASA.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Standardize.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterUtils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.files.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdRascalMCES.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCoordGen.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.cDataStructs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolTransforms.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.GraphDescriptors.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rdMetricMatrixCalc.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDeprotect.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.RegistrationHash.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.InchiInfo.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rdScaffoldNetwork.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.FraggleSim.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.rdBase.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.SDFToCSV.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbPickleSupplier.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolEnumerator.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.MLData.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.ExcludedVolume.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSynthonSpaceSearch.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.FindQuantBounds.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.MolSimilarity.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDRandom.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fragments.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Generate.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemReactions.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.QED.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.VectCollection.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_sa.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.ShowFeats.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2DQt.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.DbMolSupplier.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentCatalog.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ReducedGraphs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolHash.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdGeneralizedSubstruct.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMMPA.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rdSimDivPickers.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfiltercatalog.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clustering.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState_VSA.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.DistGeom.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.LazySignature.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Recap.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Torsions.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.AlignDepict.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbConnection.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rdGeometry.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Avalon.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rdForceField.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeAlign.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDepictor.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.SimilarityPickers.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolCatalog.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.cQuantize.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.fileutils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMIF.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Quantize.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterVis.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SATIS.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeBuilder.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SDSupply.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.TestRunner.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Randomize.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Transform.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SaltRemover.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateStereoisomers.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdTautomerQuery.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateHeterocycles.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.DescriptorUtilities.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDetermineBonds.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeHelpers.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapPoint.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDPaths.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesDupeFilter.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdtrajectory.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeObjects.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.Pharmacophore.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.Enumerator.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.fmcs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Butina.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.TemplateAlign.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolAlign.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdEnumerateStereoisomers.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentMatcher.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbModule.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Parser.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PeriodicTable.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.AtomTypes.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.TorsionFingerprints.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Pairs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rdAlignment.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Matcher.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rdInfoTheory.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbResultSet.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Utils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Avalon.pyAvalonTools.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.MoleculeDescriptors.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AllChem.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdAbbreviations.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.StorageUtils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Filter.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_orig.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.listutils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatFinderCLI.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdqueries.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbUtils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.BRICS.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.Fingerprinter.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FilterCatalog.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalFeatures.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMaps.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rdMolStandardize.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ShowMols.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSLNParse.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.FeatDirUtilsRD.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.SigFactory.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.FingerprintMols.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.VoteImg.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.BuildFragmentCatalog.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDLogger.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolSurf.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitClusterer.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFMCS.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Descriptors.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMHFPFingerprint.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Utils.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.CompoundDescriptors.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/exts -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/exts/extapi.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/Cartridge.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/GettingStartedInC++.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/Install.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/BackwardsIncompatibleChanges.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/Overview.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/api-docs.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/index.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/Cookbook.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/GettingStartedInPython.rst -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/GettingStartedWithContributing.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Docs/Book/conf.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/identifyReactants.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/README.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/utils.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/M_Kossner -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/Frames.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/README -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/LEF -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/LEF/ClusterFps.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/LEF/CreateFps.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePlot.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/LEF/README.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/LEF/AddLabels.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePredict.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/README.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/examples -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/examples/chembl24_structs_randomtestSample_100_out.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/examples/chembl24_structs_randomtestSample_100.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/FilterSet_NIBR2019_wPubChemExamples.html -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/filterExamples.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NIBRSubstructureFilters/SubstructureFilter_HitTriaging_wPubChemExamples.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ConformerParser -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/rdConformerParser.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/CMakeLists.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/testConformerParser.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/CMakeLists.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/AtomAtomSimilarity -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/data -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/final_fraggle_results.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/ChEMBL_11265_actives.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/atomcontrib.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/fraggle.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/rdkit_tversky.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/cxn_tversky.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/fraggle/readme.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Glare -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Glare/README.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Glare/glare.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ChiralPairs -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ChiralPairs/README.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/ChiralPairs/ChiralDescriptors.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/pzc -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.html -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/pzc/readme.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/mol_transform.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/test_rfrag.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_smart_output.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans_smarts.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/simple.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym_maxheavy.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxratio.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mol_trans_output.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_cansmirks.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_transfroms.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_output.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxheavy.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_output.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs_smarts.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_smi.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smiles_mol_trans.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_default.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/create_mmp_db.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/README.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/cansmirk.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/rfrag.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/indexing.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/mmpa/search_mmp_db.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/MolVS -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/MolVS/molvs_cli.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/fastcluster.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/sdf2smi.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/converted.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/cdk2.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/clustered.tsv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/clustered_parse.tsv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/centroid.tsv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/README.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/fp.tsv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/cdk2.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/N15.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/1C9.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/AKI.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/5dpv_complex.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/JVE.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/6c83_complex.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/figures/BEG.png -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/README.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/SKE_renamed.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_3w2p_1C9_pH74_netcharge1.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/3m11_AKI.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/4i23_1C9.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/4i24_1C9.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/4uzh_JVE.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/AKI_renamed.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/1d4i_BEG.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/6c83.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/SKE_crystal_aligned_1.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/lig_crystal_aligned.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/N15_renamed.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/5dt0.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_AKI_pH74_netcharge1.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/aurka_protein_2c6e.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/1C9_renamed.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_ACP_pH74_netcharge1.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_N15_pH74_netcharge1.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/ACP_crystal_aligned_1.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_JVE_pH74_netcharge1.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/5dpv.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/JVE_renamed.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_SKE_pH74_netcharge1.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/crystal_aligned.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/BEG_test.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/ACP_crystal_aligned_2.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/3w2c_N15.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/data/ACP_renamed.pdb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/Examples_CalcLigRMSD.ipynb -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CalcLigRMSD/CalcLigRMSD.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/CMakeLists.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/PBF -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/PBF/README -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/PBF/PBFRDKit.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/PBF/Makefile -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/PBF/demo.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/PBF/testData -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.out -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/PBF/pbf.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/PBF/PBFRDKit.cpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NP_Score -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NP_Score/publicnp.model.gz -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NP_Score/README -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/NP_Score/npscorer.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/efgs -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/efgs/ch33query.sql -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/efgs/README.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/efgs/efgs.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/efgs/try_efgs.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/IFG -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/IFG/README -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/IFG/ifg.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/README.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810_act.csv -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810_scaffold.mol -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/pytest.ini -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/freewilson.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/requirements.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/setup.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/test -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/FreeWilson/test/test_freewilson.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/SA_Score -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/SA_Score/README -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/SA_Score/UnitTestSAScore.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data/zim.100.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/SA_Score/build_sascore_db.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Contrib/SA_Score/sascorer.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/pytest.ini -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/README -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.2.smi -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/loadErrors.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/AtomPairs.sqlt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Fingerprints.sqlt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Descriptors.sqlt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Compounds.sqlt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/pubchem.200.sdf -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/CreateDb.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/moe_like.dsc -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/UnitTestDbCLI.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/SearchDb.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/__pycache__ -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/__pycache__/SearchDb.cpython-313.pyc -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/__pycache__/CreateDb.cpython-313.pyc -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/__pycache__/UnitTestDbCLI.cpython-313-pytest-9.0.2.pyc -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/.pytest_cache -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/.pytest_cache/README.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/.pytest_cache/CACHEDIR.TAG -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/.pytest_cache/v -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/.pytest_cache/v/cache -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/.pytest_cache/v/cache/nodeids -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/.pytest_cache/.gitignore -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/create_deb_packages.sh -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/FeatFinderCLI.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/README.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/patch_rdkit_docstrings -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/patch_rdkit_docstrings/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/patch_rdkit_docstrings/__main__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/patch_rdkit_docstrings/clang_worker.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/PythonFormat.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/gen_rdkit_stubs -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/gen_rdkit_stubs/__init__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/gen_rdkit_stubs/__main__.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/gen_rdkit_stubs/worker.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Scripts/test.sh -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/README.md -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/license.txt -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDInchiLib.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDInchiLib.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDInchiLib.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/inchi.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdinchi.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/CoordGen.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdCoordGen.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitga.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitga.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitga.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDGeneral.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDGeneral.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDGeneral.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/Exceptions.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/BadFileException.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/BoostStartInclude.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/BoostEndInclude.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/ControlCHandler.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/Dict.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/FileParseException.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/Invariant.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/RDAny.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/RDValue.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/RDValue-doublemagic.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/RDValue-taggedunion.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/RDLog.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/RDProps.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/RDThreads.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/StreamOps.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/types.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/utils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/versions.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/RDConfig.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/LocaleSwitcher.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/Ranking.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/hanoiSort.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/RDExportMacros.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/export.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/test.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/ConcurrentQueue.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/BetterEnums.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/enum.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/hash -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash.hpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/hash/detail -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/hash/detail/hash_float.hpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/hash/detail/float_functions.hpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/hash/extensions.hpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash_fwd.hpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDBoost.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDBoost.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDBoost.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDBoost/Wrap.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDBoost/PySequenceHolder.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDBoost/list_indexing_suite.hpp -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDBoost/python.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDBoost/boost_numpy.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDBoost/python_streambuf.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDBoost/pyint_api.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/rdBase.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDStreams.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDStreams.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDStreams.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/RDStreams/streams.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDataStructs.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDataStructs.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDataStructs.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/base64.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/BitOps.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/BitVect.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/BitVects.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/BitVectUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/DatastructsException.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/DatastructsStreamOps.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/DiscreteDistMat.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/DiscreteValueVect.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/RealValueVect.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/ExplicitBitVect.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/SparseBitVect.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/SparseIntVect.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/FPBReader.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataStructs/MultiFPBReader.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataStructs/cDataStructs.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDGeometryLib.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDGeometryLib.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRDGeometryLib.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Geometry/Grid3D.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Geometry/GridUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Geometry/point.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Geometry/Transform2D.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Geometry/Transform3D.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Geometry/Transform.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Geometry/UniformGrid3D.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Geometry/UniformRealValueGrid3D.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Geometry/Utils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Geometry/rdGeometry.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitAlignment.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitAlignment.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitAlignment.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Numerics/Alignment/AlignPoints.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Numerics/rdAlignment.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitEigenSolvers.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitEigenSolvers.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitEigenSolvers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitOptimizer.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitOptimizer.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitOptimizer.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Numerics/Matrix.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Numerics/SquareMatrix.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Numerics/SymmMatrix.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Numerics/Vector.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Numerics/Conrec.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitForceField.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitForceField.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitForceField.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/Contrib.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/ForceField.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/AngleConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/AngleConstraints.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/DistanceConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/DistanceConstraints.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/PositionConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/TorsionConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleBend.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/BondStretch.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/Contribs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/Params.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/Utils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/Inversions.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ForceField/MMFF/Params.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ForceField/rdForceField.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDistGeometry.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDistGeometry.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDistGeometry.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DistGeom/ChiralSet.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DistGeom/ChiralViolationContribs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DistGeom/DistViolationContribs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DistGeom/FourthDimContribs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DistanceGeometry/DistGeom.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitCatalogs.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitCatalogs.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitCatalogs.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Catalogs/Catalog.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Catalogs/CatalogParams.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitGraphMol.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitGraphMol.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitGraphMol.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Atom.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/atomic_data.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/AtomIterators.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Atropisomers.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Bond.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/BondIterators.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Canon.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Chirality.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Conformer.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/details.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/GraphMol.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolOps.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolPickler.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/PeriodicTable.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/QueryAtom.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/QueryBond.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/QueryOps.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RDKitBase.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RDKitQueries.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Resonance.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RingInfo.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Rings.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ROMol.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RWMol.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SanitException.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SubstanceGroup.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/StereoGroup.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MonomerInfo.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/new_canon.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolBundle.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSmilesParse.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSmilesParse.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSmilesParse.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/CanonicalizeStereoGroups.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesJSONParsers.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDepictor.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDepictor.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDepictor.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdDepictor.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMarvinParser.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMarvinParser.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMarvinParser.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MarvinParse/MarvinParser.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFileParsers.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFileParsers.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFileParsers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/CDXMLParser.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileWriters.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.v1API.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/GeneralFileReader.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MultithreadedMolSupplier.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MultithreadedSDMolSupplier.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/PNGParser.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSubstructMatch.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSubstructMatch.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSubstructMatch.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitGenericGroups.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitGenericGroups.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitGenericGroups.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/GenericGroups/GenericGroups.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitChemReactions.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitChemReactions.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitChemReactions.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Enumerate/Enumerate.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateBase.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Enumerate/CartesianProduct.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSample.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdChemReactions.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitChemTransforms.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitChemTransforms.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitChemTransforms.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenterJSONParser.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitTautomerQuery.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitTautomerQuery.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitTautomerQuery.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/TautomerQuery/TautomerQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdTautomerQuery.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSubgraphs.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSubgraphs.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSubgraphs.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFilterCatalog.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFilterCatalog.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFilterCatalog.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdfiltercatalog.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFragCatalog.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFragCatalog.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFragCatalog.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdfragcatalog.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDescriptors.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDescriptors.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDescriptors.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Crippen.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/BCUT.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MQN.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Property.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/AtomFeat.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/OxidationNumbers.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/DCLV.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors3D.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/EEM.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/PBF.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/PMI.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR3D.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/RDF.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MORSE.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/GETAWAY.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/WHIM.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/CoulombMat.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMolDescriptors.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFingerprints.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFingerprints.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFingerprints.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MHFP.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdFingerprintGenerator.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMHFPFingerprint.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitPartialCharges.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitPartialCharges.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitPartialCharges.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdPartialCharges.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolTransforms.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolTransforms.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolTransforms.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMolTransforms.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/FFConvenience.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleContribs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdForceFieldHelpers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDistGeomHelpers.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDistGeomHelpers.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDistGeomHelpers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdDistGeom.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolAlign.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolAlign.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolAlign.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitO3AAlign.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitO3AAlign.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitO3AAlign.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMolAlign.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitShapeHelpers.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitShapeHelpers.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitShapeHelpers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdShapeHelpers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolCatalog.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolCatalog.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolCatalog.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMolCatalog.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DJS.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DHelpers.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolDraw2D.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolDraw2D.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolDraw2D.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFMCS.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFMCS.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitFMCS.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdFMCS.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolHash.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolHash.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolHash.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolHash/nmmolhash.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMolHash.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMMPA.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMMPA.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMMPA.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMMPA.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRascalMCES.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRascalMCES.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRascalMCES.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RascalMCES/RascalMCES.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RascalMCES/RascalOptions.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RascalMCES/RascalClusterOptions.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RascalMCES/RascalResult.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdRascalMCES.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSynthonSpaceSearch.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSynthonSpaceSearch.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSynthonSpaceSearch.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpace.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSet.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SynthonSpaceSearch/Synthon.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SynthonSpaceSearch/SearchResults.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceSearcher.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceSubstructureSearcher.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceFingerprintSearcher.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceRascalSearcher.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdSynthonSpaceSearch.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitEnumerateStereoisomers.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitEnumerateStereoisomers.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitEnumerateStereoisomers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/EnumerateStereoisomers/EnumerateStereoisomers.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/EnumerateStereoisomers/Flippers.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdEnumerateStereoisomers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitCIPLabeler.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitCIPLabeler.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitCIPLabeler.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/CIPLabeler/CIPLabeler.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/CIPLabeler/TooManyNodesException.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdCIPLabeler.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDeprotect.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDeprotect.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDeprotect.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Deprotect/Deprotect.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdDeprotect.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitReducedGraphs.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitReducedGraphs.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitReducedGraphs.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdReducedGraphs.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitTrajectory.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitTrajectory.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitTrajectory.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSubstructLibrary.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSubstructLibrary.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSubstructLibrary.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SubstructLibrary/PatternFactory.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdSubstructLibrary.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRGroupDecomposition.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRGroupDecomposition.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitRGroupDecomposition.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompParams.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompJSONParsers.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDetermineBonds.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDetermineBonds.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitDetermineBonds.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/DetermineBonds/DetermineBonds.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdDetermineBonds.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolInterchange.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolInterchange.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolInterchange.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolInterchange/MolInterchange.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolInterchange/details.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMolInterchange.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSLNParse.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSLNParse.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSLNParse.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdSLNParse.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdchem.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdmolops.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdqueries.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdmolfiles.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdtrajectory.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolStandardize.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolStandardize.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolStandardize.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Pipeline.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitScaffoldNetwork.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitScaffoldNetwork.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitScaffoldNetwork.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolEnumerator.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolEnumerator.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolEnumerator.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolEnumerator/MolEnumerator.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolEnumerator/LinkNode.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMolEnumerator.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitAbbreviations.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitAbbreviations.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitAbbreviations.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/Abbreviations/Abbreviations.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdAbbreviations.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitGeneralizedSubstruct.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitGeneralizedSubstruct.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/GeneralizedSubstruct/XQMol.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdGeneralizedSubstruct.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolProcessing.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolProcessing.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolProcessing.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolProcessing/MolProcessing.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMolProcessing.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolInteractionFields.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolInteractionFields.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitMolInteractionFields.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/GraphMol/MolInteractionFields/MIFDescriptors.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdMIF.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/AndQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/EqualityQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/GreaterQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/LessEqualQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/LessQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/NullQueryAlgebra.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/OrQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/Query.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/QueryObjects.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/RangeQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/SetQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Query/XOrQuery.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/Features/Feature.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSimDivPickers.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSimDivPickers.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitSimDivPickers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/SimDivPickers/LeaderPicker.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/SimDivPickers/MaxMinPicker.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKithc.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKithc.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKithc.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Cluster/Clustering.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitInfoTheory.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitInfoTheory.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitInfoTheory.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/ML/Data/cQuantize.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitChemicalFeatures.so.1.2025.03.6 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitChemicalFeatures.so.1 -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/libRDKitChemicalFeatures.so -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/Chem/rdChemicalFeatures.so ===================================================================== PostgreSQL cartridge installation succeeded. ===================================================================== Restart the PostgreSQL service before using the PostgreSQL RDKit cartridge. ===================================================================== -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages/rdkit/RDPaths.py -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/cmake/rdkit/rdkit-targets.cmake -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/cmake/rdkit/rdkit-targets-none.cmake -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/cmake/rdkit/rdkit-config.cmake -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/cmake/rdkit/rdkit-config-version.cmake -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/cmake/rdkitpython/rdkitpython-targets.cmake -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/cmake/rdkitpython/rdkitpython-targets-none.cmake -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/cmake/rdkitpython/rdkitpython-config.cmake -- Installing: /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/cmake/rdkitpython/rdkitpython-config-version.cmake make[2]: Leaving directory '/build/reproducible-path/rdkit-202503.6/obj-powerpc64le-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/rdkit-202503.6' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/rdkit-202503.6' mkdir -p /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3 mv /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13/site-packages /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3/dist-packages rm -f -rf /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3.13 ln -sf /usr/share/fonts/truetype/freefont/FreeSans.ttf /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3/dist-packages/rdkit/Chem/Draw/FreeSans.ttf dh_install -ppython3-rdkit /usr/lib/python3 rm -f -rf /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/lib/python3/dist-packages/rdkit/docs/ rm -f -rf /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/__pycache__ rm -f -rf /build/reproducible-path/rdkit-202503.6/debian/tmp/usr/share/RDKit/Projects/DbCLI/__pycache__ dh_numpy3 Can't stat debian/librdkit1t64: No such file or directory at /usr/bin/dh_numpy3 line 86. Can't stat debian/librdkit-dev: No such file or directory at /usr/bin/dh_numpy3 line 86. Can't stat debian/postgresql-18-rdkit: No such file or directory at /usr/bin/dh_numpy3 line 86. dh_numpy3: skipping binary package librdkit1t64 which does not depend on the NumPy C ABI dh_numpy3: skipping binary package librdkit-dev which does not depend on the NumPy C ABI dh_numpy3: skipping binary package postgresql-18-rdkit which does not depend on the NumPy C ABI dh_install for v in $(pg_buildext supported-versions); do \ mkdir -p debian/postgresql-$v-rdkit/usr/lib/postgresql/$v/lib/ debian/postgresql-$v-rdkit/usr/share/postgresql/$v/extension/; \ cp Code/PgSQL/rdkit/build-$v/librdkit.so debian/postgresql-$v-rdkit/usr/lib/postgresql/$v/lib/rdkit.so; \ cp Code/PgSQL/rdkit/build-$v/rdkit*.sql debian/postgresql-$v-rdkit/usr/share/postgresql/$v/extension/; \ cp Code/PgSQL/rdkit/build-$v/update_sql/rdkit*.sql debian/postgresql-$v-rdkit/usr/share/postgresql/$v/extension/; \ cp Code/PgSQL/rdkit/rdkit.control debian/postgresql-$v-rdkit/usr/share/postgresql/$v/extension/; \ done mkdir -p /build/reproducible-path/rdkit-202503.6/debian/rdkit-doc/usr/share/doc/rdkit/ # cp /build/reproducible-path/rdkit-202503.6/Docs/Book/_build/latex/RDKit.pdf /build/reproducible-path/rdkit-202503.6/debian/rdkit-doc/usr/share/doc/rdkit/ cp -a /build/reproducible-path/rdkit-202503.6/Docs/Book/_build/html /build/reproducible-path/rdkit-202503.6/debian/rdkit-doc/usr/share/doc/rdkit/ ln -sf /usr/share/javascript/jquery/jquery.js /build/reproducible-path/rdkit-202503.6/debian/rdkit-doc/usr/share/doc/rdkit//html/cppapi/jquery.js ln -sf /usr/share/javascript/jquery/jquery.js /build/reproducible-path/rdkit-202503.6/debian/rdkit-doc/usr/share/doc/rdkit//html/_static/jquery.js ln -sf /usr/share/javascript/underscore/underscore.js /build/reproducible-path/rdkit-202503.6/debian/rdkit-doc/usr/share/doc/rdkit//html/_static/underscore.js make[1]: Leaving directory '/build/reproducible-path/rdkit-202503.6' dh_installdocs -a -O--buildsystem=cmake debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/rdkit-202503.6' dh_installchangelogs ReleaseNotes.md make[1]: Leaving directory '/build/reproducible-path/rdkit-202503.6' debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/rdkit-202503.6' dh_python3 -ppython3-rdkit I: dh_python3 fs:521: renaming rdBase.so to rdBase.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMetricMatrixCalc.so to rdMetricMatrixCalc.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdAbbreviations.so to rdAbbreviations.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdCIPLabeler.so to rdCIPLabeler.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdChemReactions.so to rdChemReactions.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdChemicalFeatures.so to rdChemicalFeatures.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdCoordGen.so to rdCoordGen.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdDepictor.so to rdDepictor.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdDeprotect.so to rdDeprotect.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdDetermineBonds.so to rdDetermineBonds.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdDistGeom.so to rdDistGeom.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdEnumerateStereoisomers.so to rdEnumerateStereoisomers.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdFMCS.so to rdFMCS.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdFingerprintGenerator.so to rdFingerprintGenerator.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdForceFieldHelpers.so to rdForceFieldHelpers.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdGeneralizedSubstruct.so to rdGeneralizedSubstruct.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMHFPFingerprint.so to rdMHFPFingerprint.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMIF.so to rdMIF.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMMPA.so to rdMMPA.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolAlign.so to rdMolAlign.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolCatalog.so to rdMolCatalog.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolChemicalFeatures.so to rdMolChemicalFeatures.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolDescriptors.so to rdMolDescriptors.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolEnumerator.so to rdMolEnumerator.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolHash.so to rdMolHash.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolInterchange.so to rdMolInterchange.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolProcessing.so to rdMolProcessing.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolTransforms.so to rdMolTransforms.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdPartialCharges.so to rdPartialCharges.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdRGroupDecomposition.so to rdRGroupDecomposition.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdRascalMCES.so to rdRascalMCES.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdReducedGraphs.so to rdReducedGraphs.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdSLNParse.so to rdSLNParse.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdShapeHelpers.so to rdShapeHelpers.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdSubstructLibrary.so to rdSubstructLibrary.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdSynthonSpaceSearch.so to rdSynthonSpaceSearch.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdTautomerQuery.so to rdTautomerQuery.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdchem.so to rdchem.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdfiltercatalog.so to rdfiltercatalog.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdfragcatalog.so to rdfragcatalog.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdinchi.so to rdinchi.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdmolfiles.so to rdmolfiles.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdmolops.so to rdmolops.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdqueries.so to rdqueries.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdtrajectory.so to rdtrajectory.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolStandardize.so to rdMolStandardize.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdScaffoldNetwork.so to rdScaffoldNetwork.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdMolDraw2D.so to rdMolDraw2D.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdInfoTheory.so to rdInfoTheory.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming cQuantize.so to cQuantize.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming Clustering.so to Clustering.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdForceField.so to rdForceField.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming cDataStructs.so to cDataStructs.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdGeometry.so to rdGeometry.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdAlignment.so to rdAlignment.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming rdSimDivPickers.so to rdSimDivPickers.cpython-313-powerpc64le-linux-gnu.so I: dh_python3 fs:521: renaming DistGeom.so to DistGeom.cpython-313-powerpc64le-linux-gnu.so dh_numpy3 -ppython3-rdkit make[1]: Leaving directory '/build/reproducible-path/rdkit-202503.6' dh_installsystemduser -a -O--buildsystem=cmake dh_lintian -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/rdkit-202503.6' dh_missing --list-missing dh_missing: warning: usr/lib/postgresql/18/lib/rdkit.so exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/BackwardsIncompatibleChanges.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/CMakeLists.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/FindMyRDKit.cmake exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example1.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example10.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example11.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example12.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example13.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example14.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example15.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example16.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example17.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example2.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example3.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example4.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example5.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example6.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example7.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example8.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/C++Examples/example9.cpp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/Cartridge.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/Cookbook.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/GettingStartedInC++.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/GettingStartedInPython.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/GettingStartedWithContributing.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/Install.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/Makefile exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/Overview.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/RDKit_Book.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/api-docs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/conf.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/5ht3ligs.sdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/AmideBond.rxn exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/CrossLink.mol exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/DnaTest3.mol exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/MinimalFeatures.fdef exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/README.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf.gz exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/bzr.sdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/bzr.smi exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/cdk2.sdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/chiral.mol exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/input.mol exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/invalid.mol exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/s1p_chembldoc89753.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/solubility.test.sdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/solubility.train.sdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/data/test_multi_colours.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/exts/extapi.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/Cc1ccccc1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/DnaDoubleStrand.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molA.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molB.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molC.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molD.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molE.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molF.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/EnhancedStereoSSS_molG.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/PeptideConversion.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_0_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_0_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_0_im2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_13_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_13_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_15_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_15_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_17_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_17_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_19_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_1_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_1_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_1_im2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_1_im3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_20_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_20_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_21_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_21_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_21_im2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_21_im3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_21_im4.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_21_im5.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_22_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_22_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_23_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_23_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_28_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_28_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_29_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_2_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_2_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_30_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_30_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_32_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_32_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_33_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_33_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_33_im2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_34_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_34_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_34_im2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_35_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_36_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_36_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_37_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_37_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_37_im2.svg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_38_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_39_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_3_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_40_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_40_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_6_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_6_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_6_im2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_7_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_7_im1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_7_im2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_7_im3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_7_im4.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_7_im5.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_7_im6.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/RDKitCB_8_im0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/WobbleRna.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/ary_group.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atom_annotation_1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atom_highlights_1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atom_highlights_2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atom_highlights_3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atom_labels_1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atom_labels_2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atom_labels_3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atrop_example1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atrop_example2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atrop_example3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atrop_example4.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atrop_example5.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atrop_representation1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/atrop_representation2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/cdk2_mol1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/cdk2_mol2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/indole1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/mcs_example_1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/mcs_example_2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/mcs_example_3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/mcs_example_4.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/mcs_example_5.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/mcs_example_6.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/mfp2_bit872.svg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/mol_metadata1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_ex1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_ex2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_missing1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_oh1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_oh2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_sp1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_sp2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_sp3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_sp4.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_tb1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/nontetstereo_tb2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/parastereo_1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/parastereo_2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_0.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_10.jpg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_10.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_11.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_12.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_4.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_5.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_6.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_7.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_8.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/picture_9.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/potential_stereo_double_bond3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/pull_req1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/pull_req2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/query_atoms.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/query_bonds.2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/query_bonds.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/rdk_bit1553.svg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/rdk_bit1553_2.svg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/rdkit_fork_clone.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/reaction1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/reaction1_highlight.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/similarity_map_charges.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/similarity_map_crippen.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/similarity_map_fp1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/similarity_map_fp2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/similarity_map_fp3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/similarity_map_rf.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/stereo_annotation.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/style.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/images/substruct_search_parameters1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/index.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Avalon.pyAvalonTools.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Avalon.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AllChem.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Pairs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Sheridan.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Torsions.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Utils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.BRICS.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.BuildFragmentCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.AlignDepict.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.BulkTester.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.DescriptorUtilities.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.SDFToCSV.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.TemplateExpand.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalFeatures.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalForceFields.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Crippen.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors3D.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.IPythonConsole.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.MolDrawing.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.SimilarityMaps.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2D.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2DQt.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.AtomTypes.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState_VSA.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.Fingerprinter.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateHeterocycles.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateStereoisomers.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FastSDMolSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatFinderCLI.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapParser.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapPoint.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMaps.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.FeatDirUtilsRD.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.ShowFeats.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FilterCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.ClusterMols.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.DbFpSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.FingerprintMols.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.MolSimilarity.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.SimilarityScreener.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.FraggleSim.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentMatcher.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fragments.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FunctionalGroups.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.GraphDescriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Graphs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Lipinski.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MACCSkeys.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.FingerprintUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_orig.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_sa.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.InchiInfo.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.MolKey.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rdMolStandardize.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolSurf.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.PandasTools.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.PeriodicTable.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Generate.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Matcher.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.SigFactory.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Utils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.EmbedLib.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.ExcludedVolume.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.Pharmacophore.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.PropertyMol.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.PyMol.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.QED.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Randomize.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Recap.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ReducedGraphs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.RegistrationHash.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.SATIS.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.SaltRemover.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.MurckoScaffold.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rdScaffoldNetwork.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ShowMols.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.Enumerator.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.SpacialScore.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.BuilderUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeAligner.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeBuilder.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeObjects.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.DbMolSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.MolSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.TemplateAlign.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.TorsionFingerprints.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.fmcs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.inchi.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdAbbreviations.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCIPLabeler.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemReactions.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCoordGen.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDepictor.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDeprotect.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDetermineBonds.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDistGeom.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdEHTTools.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdEnumerateStereoisomers.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFMCS.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFingerprintGenerator.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFreeSASA.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdGeneralizedSubstruct.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMHFPFingerprint.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMIF.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMMPA.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolAlign.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolEnumerator.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolHash.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolProcessing.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolTransforms.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdRascalMCES.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdReducedGraphs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSLNParse.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeAlign.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeHelpers.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSynthonSpaceSearch.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdTautomerQuery.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdchem.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfiltercatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfragcatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdinchi.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolfiles.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolops.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdqueries.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdtrajectory.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rdMetricMatrixCalc.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataManip.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsemble.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsembleDb.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.LazySignature.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.TopNContainer.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.VectCollection.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.cDataStructs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbConnection.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbInfo.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbModule.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbResultSet.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.StorageUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.DistGeom.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rdForceField.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rdGeometry.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Butina.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterVis.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clustering.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clusters.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Murtagh.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Resemblance.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Standardize.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.DataUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.FindQuantBounds.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.MLData.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Quantize.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.SplitData.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Stats.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Transforms.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.cQuantize.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.CompoundDescriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Descriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.MoleculeDescriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Parser.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitClusterer.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitRank.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.entropy.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rdInfoTheory.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.VoteImg.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.MatOps.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.files.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.ML.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rdAlignment.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.RDConfig.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.RDLogger.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.RDPaths.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.RDRandom.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.SimilarityPickers.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rdSimDivPickers.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.TestRunner.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Filter.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Node.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbPickleSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SDSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsMolFilter.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsRemover.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesDupeFilter.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Output.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Supply.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Transform.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.VLib.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.rdBase.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.utils.chemutils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.utils.fileutils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.utils.listutils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.utils.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book/source/rdkit.utils.spiral.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/An_overview_of_the_RDKit_jp.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/Backwards_incompatible_changes_jp.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/Getting_Started_with_RDKit_in_Python_jp.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/Installation_jp.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/Makefile exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/RDKit_cookbook_jp.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/Supplementary_Text_jp.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/The_RDKit_Book_jp.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/The_RDKit_database_cartridge_jp.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/conf.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/index.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/introduction_jp.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_10.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_11.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_12.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_13.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_14.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_15.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_16.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_17.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_18.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_19.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_2.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_20.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_21.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_22.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_23.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_24.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_25.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_26.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_27.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_28.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_29.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_3.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_30.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_31.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_32.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_33.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_34.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_35.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_36.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_37.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_38.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_39.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_4.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_40.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_41.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_42.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_43.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_44.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_45.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_46.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_47.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_48.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_49.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_5.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_50.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_51.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_52.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_53.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_54.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_55.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_56.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_57.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_58.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_59.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_6.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_60.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_61.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_62.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_7.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_8.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/supple_images/jp_supple_9.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Book_jp/terminology_jp.rst exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/CIPLabeling.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/EnhancedStereo.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/SGroups.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/gsocGeneralFileReader.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_base.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_trans_base.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Images/logo.ai exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Images/logo.inkscape.svg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Images/logo.lrg.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Images/logo.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Images/logo_plain.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/MolStandardize.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-DummyCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GA.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GenericCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-StereoChemTest.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-Tests.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/Notebooks/compounds.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Docs/RD.css exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/README.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/FeatFinderCLI.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/PythonFormat.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/README.md exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/create_deb_packages.sh exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/gen_rdkit_stubs/__init__.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/gen_rdkit_stubs/__main__.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/gen_rdkit_stubs/worker.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/patch_rdkit_docstrings/__init__.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/patch_rdkit_docstrings/__main__.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/patch_rdkit_docstrings/clang_worker.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/Scripts/test.sh exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/RDKit/license.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--3.8--4.0.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.0--4.0.1.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.0.1--4.1.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.1--4.1.1.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.1.1--4.2.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.2--4.3.0.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.3.0--4.4.0.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.4.0--4.5.0.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.5.0--4.6.0.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.6.0--4.6.1.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.6.1--4.7.0.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit--4.7.0.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/postgresql/18/extension/rdkit.control exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: librdkit-dev (66), librdkit1t64 (128), postgresql-18-rdkit (0), python3-rdkit (1), rdkit-data (3), rdkit-doc (0) * dh_installdocs: librdkit-dev (0), librdkit1t64 (0), postgresql-18-rdkit (0), python3-rdkit (0), rdkit-data (0), rdkit-doc (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.md.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. make[1]: Leaving directory '/build/reproducible-path/rdkit-202503.6' dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld64.so.2.usr-is-merged dpkg-shlibdeps: warning: debian/postgresql-18-rdkit/usr/lib/postgresql/18/lib/rdkit.so contains an unresolvable reference to symbol cstring_to_text: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyErr_SetObject used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2025.03.6 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2025.03.6 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_ValueError used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2025.03.6 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2025.03.6 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2025.03.6 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2025.03.6 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_AttributeError used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2025.03.6 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_KeyError used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2025.03.6 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2025.03.6 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/librdkit1t64/usr/lib/libRDKitRDBoost.so.1.2025.03.6 found in none of the libraries dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld64.so.2.usr-is-merged dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dpkg-gencontrol: warning: Breaks field of package postgresql-18-rdkit: substitution variable ${postgresql:Breaks} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-rdkit: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Depends field of package librdkit-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Breaks field of package postgresql-18-rdkit: substitution variable ${postgresql:Breaks} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-rdkit: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'librdkit1t64' in '../librdkit1t64_202503.6-3_ppc64el.deb'. dpkg-deb: building package 'python3-rdkit-dbgsym' in '../python3-rdkit-dbgsym_202503.6-3_ppc64el.deb'. dpkg-deb: building package 'librdkit1t64-dbgsym' in '../librdkit1t64-dbgsym_202503.6-3_ppc64el.deb'. dpkg-deb: building package 'python3-rdkit' in '../python3-rdkit_202503.6-3_ppc64el.deb'. dpkg-deb: building package 'librdkit-dev' in '../librdkit-dev_202503.6-3_ppc64el.deb'. dpkg-deb: building package 'postgresql-18-rdkit-dbgsym' in '../postgresql-18-rdkit-dbgsym_202503.6-3_ppc64el.deb'. dpkg-deb: building package 'postgresql-18-rdkit' in '../postgresql-18-rdkit_202503.6-3_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../rdkit_202503.6-3_ppc64el.buildinfo dpkg-genchanges --build=any -O../rdkit_202503.6-3_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-01-15T04:06:36Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 15 Jan 2026 04:06:37 +0000 | +------------------------------------------------------------------------------+ rdkit_202503.6-3_ppc64el.changes: --------------------------------- Format: 1.8 Date: Tue, 21 Oct 2025 06:00:34 -0400 Source: rdkit Binary: librdkit-dev librdkit1t64 librdkit1t64-dbgsym postgresql-18-rdkit postgresql-18-rdkit-dbgsym python3-rdkit python3-rdkit-dbgsym Architecture: ppc64el Version: 202503.6-3 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: librdkit-dev - Collection of cheminformatics and machine-learning software (deve librdkit1t64 - Collection of cheminformatics and machine-learning software (shar postgresql-18-rdkit - Cheminformatics and machine-learning software (PostgreSQL Cartrid python3-rdkit - Collection of cheminformatics and machine-learning software Closes: 1117731 Changes: rdkit (202503.6-3) unstable; urgency=medium . * Increase ctest timeout to 7200 (Closes: #1117731). Thanks Adrian Bunk. Checksums-Sha1: cc9c44eb96a4ef1d3ae2968c67c35af24535d41f 494460 librdkit-dev_202503.6-3_ppc64el.deb 87f21d18e3ebccbfe696bca2d1dc55a530f1394c 127028316 librdkit1t64-dbgsym_202503.6-3_ppc64el.deb ff90f08b83c9b30c3ca939bba39abbea6a461c38 6075044 librdkit1t64_202503.6-3_ppc64el.deb 423d4ca11d307304885d84c2936bcb4c211d2c0f 1184912 postgresql-18-rdkit-dbgsym_202503.6-3_ppc64el.deb ec14afaa67f3776474922066d7484f306738b44d 262444 postgresql-18-rdkit_202503.6-3_ppc64el.deb df12ad5737562a41ba856132b84167dec5dc1b84 63520952 python3-rdkit-dbgsym_202503.6-3_ppc64el.deb 77fcfb1df87bcc1798c232580865267467ba2fca 4607180 python3-rdkit_202503.6-3_ppc64el.deb e77d6e1865b9e960dafe915ce21e93baf24f6a78 17926 rdkit_202503.6-3_ppc64el.buildinfo Checksums-Sha256: cd4581529824331cb3e369b03d676d742286a55d4725cd0a76138fc820c28ab3 494460 librdkit-dev_202503.6-3_ppc64el.deb d9321452c3d154d8fbbadcf3ce205148403c20bb27d0a6b452e1d470e5f2dde1 127028316 librdkit1t64-dbgsym_202503.6-3_ppc64el.deb 3af8271a51deb6a5b87979597bd5dfacdf72098e226d42de4f4d8a2eb970605f 6075044 librdkit1t64_202503.6-3_ppc64el.deb 5316d8821663c1d7c6a415cf2c77eaa5ec899c831170d92f22a7d1c09e021bc7 1184912 postgresql-18-rdkit-dbgsym_202503.6-3_ppc64el.deb c988329d98e7780f920bacae2a15fdf05ee92963e9fad85ffb9fef003c407e61 262444 postgresql-18-rdkit_202503.6-3_ppc64el.deb 11a5c73eedd7341bb52666116f35860c0b313b3652f695ecc83a09170ae2a538 63520952 python3-rdkit-dbgsym_202503.6-3_ppc64el.deb a219108b30adafe8d6aa83b402b1cd33b9098ba77c855f64a242ba0dde2a7a7b 4607180 python3-rdkit_202503.6-3_ppc64el.deb e6ba5e0691dd7d0724dbb03849a6a4658c141e1dcce7f1fc49791ae916acde21 17926 rdkit_202503.6-3_ppc64el.buildinfo Files: 05e3589abbfd32ebe93e1d029191d558 494460 libdevel optional librdkit-dev_202503.6-3_ppc64el.deb fa73a0ce9c78f65749f604311abe8f09 127028316 debug optional librdkit1t64-dbgsym_202503.6-3_ppc64el.deb 71ff370c04ab2fac545485c73137b503 6075044 libs optional librdkit1t64_202503.6-3_ppc64el.deb b66100a1b0c2520909692a77496ec493 1184912 debug optional postgresql-18-rdkit-dbgsym_202503.6-3_ppc64el.deb e3bd0d90f4d5d3bca5fa67aff46a7c43 262444 database optional postgresql-18-rdkit_202503.6-3_ppc64el.deb 64b710f29b878048c79b6effd351d064 63520952 debug optional python3-rdkit-dbgsym_202503.6-3_ppc64el.deb 92629a441db95acb3ca97b68b51c1e9a 4607180 python optional python3-rdkit_202503.6-3_ppc64el.deb faa247b53080b5e937c77544d7b2b7fd 17926 science optional rdkit_202503.6-3_ppc64el.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Thu, 15 Jan 2026 04:06:38 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: rdkit Binary: librdkit-dev librdkit1t64 librdkit1t64-dbgsym postgresql-18-rdkit postgresql-18-rdkit-dbgsym python3-rdkit python3-rdkit-dbgsym Architecture: ppc64el Version: 202503.6-3 Checksums-Md5: 05e3589abbfd32ebe93e1d029191d558 494460 librdkit-dev_202503.6-3_ppc64el.deb fa73a0ce9c78f65749f604311abe8f09 127028316 librdkit1t64-dbgsym_202503.6-3_ppc64el.deb 71ff370c04ab2fac545485c73137b503 6075044 librdkit1t64_202503.6-3_ppc64el.deb b66100a1b0c2520909692a77496ec493 1184912 postgresql-18-rdkit-dbgsym_202503.6-3_ppc64el.deb e3bd0d90f4d5d3bca5fa67aff46a7c43 262444 postgresql-18-rdkit_202503.6-3_ppc64el.deb 64b710f29b878048c79b6effd351d064 63520952 python3-rdkit-dbgsym_202503.6-3_ppc64el.deb 92629a441db95acb3ca97b68b51c1e9a 4607180 python3-rdkit_202503.6-3_ppc64el.deb Checksums-Sha1: cc9c44eb96a4ef1d3ae2968c67c35af24535d41f 494460 librdkit-dev_202503.6-3_ppc64el.deb 87f21d18e3ebccbfe696bca2d1dc55a530f1394c 127028316 librdkit1t64-dbgsym_202503.6-3_ppc64el.deb ff90f08b83c9b30c3ca939bba39abbea6a461c38 6075044 librdkit1t64_202503.6-3_ppc64el.deb 423d4ca11d307304885d84c2936bcb4c211d2c0f 1184912 postgresql-18-rdkit-dbgsym_202503.6-3_ppc64el.deb ec14afaa67f3776474922066d7484f306738b44d 262444 postgresql-18-rdkit_202503.6-3_ppc64el.deb df12ad5737562a41ba856132b84167dec5dc1b84 63520952 python3-rdkit-dbgsym_202503.6-3_ppc64el.deb 77fcfb1df87bcc1798c232580865267467ba2fca 4607180 python3-rdkit_202503.6-3_ppc64el.deb Checksums-Sha256: cd4581529824331cb3e369b03d676d742286a55d4725cd0a76138fc820c28ab3 494460 librdkit-dev_202503.6-3_ppc64el.deb d9321452c3d154d8fbbadcf3ce205148403c20bb27d0a6b452e1d470e5f2dde1 127028316 librdkit1t64-dbgsym_202503.6-3_ppc64el.deb 3af8271a51deb6a5b87979597bd5dfacdf72098e226d42de4f4d8a2eb970605f 6075044 librdkit1t64_202503.6-3_ppc64el.deb 5316d8821663c1d7c6a415cf2c77eaa5ec899c831170d92f22a7d1c09e021bc7 1184912 postgresql-18-rdkit-dbgsym_202503.6-3_ppc64el.deb c988329d98e7780f920bacae2a15fdf05ee92963e9fad85ffb9fef003c407e61 262444 postgresql-18-rdkit_202503.6-3_ppc64el.deb 11a5c73eedd7341bb52666116f35860c0b313b3652f695ecc83a09170ae2a538 63520952 python3-rdkit-dbgsym_202503.6-3_ppc64el.deb a219108b30adafe8d6aa83b402b1cd33b9098ba77c855f64a242ba0dde2a7a7b 4607180 python3-rdkit_202503.6-3_ppc64el.deb Build-Origin: Debian Build-Architecture: ppc64el Build-Date: Thu, 15 Jan 2026 04:06:33 +0000 Build-Path: /build/reproducible-path/rdkit-202503.6 Installed-Build-Depends: adduser (= 3.154), architecture-properties (= 0.2.6), autoconf (= 2.72-3.1), automake (= 1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), binutils (= 2.45.50.20251209-1), binutils-common (= 2.45.50.20251209-1), binutils-powerpc64le-linux-gnu (= 2.45.50.20251209-1), bison (= 2:3.8.2+dfsg-1+b2), bsdextrautils (= 2.41.3-3), build-essential (= 12.12), bzip2 (= 1.0.8-6), ca-certificates (= 20250419), catch2 (= 3.7.1-0.6), clang-21 (= 1:21.1.8-1+b1), cmake (= 4.2.1-2), cmake-data (= 4.2.1-2), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-12), cpp-15-powerpc64le-linux-gnu (= 15.2.0-12), cpp-powerpc64le-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.29), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-python (= 7.20251231), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), docutils-common (= 0.22.4+dfsg-1), doxygen (= 1.15.0+ds1-1+b1), dpkg (= 1.23.3), dpkg-dev (= 1.23.3), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), flex (= 2.6.4-8.2+b4), fontconfig (= 2.17.1-3), fontconfig-config (= 2.17.1-3), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-lmodern (= 2.005-1), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-12), g++-15-powerpc64le-linux-gnu (= 15.2.0-12), g++-powerpc64le-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-12), gcc-15-base (= 15.2.0-12), gcc-15-powerpc64le-linux-gnu (= 15.2.0-12), gcc-powerpc64le-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), girepository-tools (= 2.86.3-4), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), hicolor-icon-theme (= 0.18-2), hostname (= 3.25), icu-devtools (= 76.1-4), imagemagick (= 8:7.1.2.12+dfsg1-1), imagemagick-7-common (= 8:7.1.2.12+dfsg1-1), imagemagick-7.q16 (= 8:7.1.2.12+dfsg1-1), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), latexmk (= 1:4.87~ds-1), libabsl20240722 (= 20240722.0-4), libacl1 (= 2.3.2-2+b1), libaom3 (= 3.13.1-2), libapache-pom-java (= 33-2), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.8.5-1), libasan8 (= 15.2.0-12), libatomic1 (= 15.2.0-12), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libavif16 (= 1.3.0-1+b2), libbinutils (= 2.45.50.20251209-1), libblas3 (= 3.12.1-7), libblkid-dev (= 2.41.3-3), libblkid1 (= 2.41.3-3), libboost-atomic1.83-dev (= 1.83.0-5+b1), libboost-atomic1.83.0 (= 1.83.0-5+b1), libboost-chrono1.83-dev (= 1.83.0-5+b1), libboost-chrono1.83.0t64 (= 1.83.0-5+b1), libboost-date-time1.83-dev (= 1.83.0-5+b1), libboost-date-time1.83.0 (= 1.83.0-5+b1), libboost-dev (= 1.83.0.2+b2), libboost-iostreams-dev (= 1.83.0.2+b2), libboost-iostreams1.83-dev (= 1.83.0-5+b1), libboost-iostreams1.83.0 (= 1.83.0-5+b1), libboost-numpy-dev (= 1.83.0.2+b2), libboost-numpy1.83-dev (= 1.83.0-5+b1), libboost-numpy1.83.0 (= 1.83.0-5+b1), libboost-program-options-dev (= 1.83.0.2+b2), libboost-program-options1.83-dev (= 1.83.0-5+b1), libboost-program-options1.83.0 (= 1.83.0-5+b1), libboost-python-dev (= 1.83.0.2+b2), libboost-python1.83-dev (= 1.83.0-5+b1), libboost-python1.83.0 (= 1.83.0-5+b1), libboost-regex-dev (= 1.83.0.2+b2), libboost-regex1.83-dev (= 1.83.0-5+b1), libboost-regex1.83.0 (= 1.83.0-5+b1), libboost-serialization1.83-dev (= 1.83.0-5+b1), libboost-serialization1.83.0 (= 1.83.0-5+b1), libboost-system-dev (= 1.83.0.2+b2), libboost-system1.83-dev (= 1.83.0-5+b1), libboost-system1.83.0 (= 1.83.0-5+b1), libboost-thread-dev (= 1.83.0.2+b2), libboost-thread1.83-dev (= 1.83.0-5+b1), libboost-thread1.83.0 (= 1.83.0-5+b1), libboost1.83-dev (= 1.83.0-5+b1), libbrotli-dev (= 1.1.0-2+b9), libbrotli1 (= 1.1.0-2+b9), libbsd0 (= 0.12.2-2), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.42-7), libc-dev-bin (= 2.42-7), libc-gconv-modules-extra (= 2.42-7), libc6 (= 2.42-7), libc6-dev (= 2.42-7), libcairo-gobject2 (= 1.18.4-3), libcairo-script-interpreter2 (= 1.18.4-3), libcairo2 (= 1.18.4-3), libcairo2-dev (= 1.18.4-3), libcap-ng0 (= 0.8.5-4+b2), libcap2 (= 1:2.75-10+b5), libcatch2-dev (= 3.7.1-0.6), libcc1-0 (= 15.2.0-12), libclang-common-21-dev (= 1:21.1.8-1+b1), libclang-cpp21 (= 1:21.1.8-1+b1), libclang1-21 (= 1:21.1.8-1+b1), libcom-err2 (= 1.47.2-3+b8), libcommons-logging-java (= 1.3.0-2), libcommons-parent-java (= 56-1), libcoordgen-dev (= 3.0.2-3), libcoordgen3 (= 3.0.2-3), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45.50.20251209-1), libctf0 (= 2.45.50.20251209-1), libcurl4t64 (= 8.18.0-1), libdatrie1 (= 0.2.14-1), libdav1d7 (= 1.5.3-1), libdb5.3t64 (= 5.3.28+dfsg2-11), libde265-0 (= 1.0.16-1+b1), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.29), libdeflate0 (= 1.23-2), libdpkg-perl (= 1.23.3), libedit2 (= 3.1-20251016-1), libeigen3-dev (= 3.4.0-5), libelf1t64 (= 0.194-1), libexpat1 (= 2.7.3-1), libexpat1-dev (= 2.7.3-1), libffi-dev (= 3.5.2-3), libffi8 (= 3.5.2-3), libfftw3-double3 (= 3.3.10-2+b1), libfile-stripnondeterminism-perl (= 1.15.0-1), libfmt10 (= 10.1.1+ds1-4), libfontbox-java (= 1:1.8.16-5), libfontconfig-dev (= 2.17.1-3), libfontconfig1 (= 2.17.1-3), libfontenc1 (= 1:1.1.8-1+b2), libfreetype-dev (= 2.14.1+dfsg-2), libfreetype6 (= 2.14.1+dfsg-2), libfribidi0 (= 1.0.16-5), libgav1-2 (= 0.20.0-2), libgc1 (= 1:8.2.10-1), libgcc-15-dev (= 15.2.0-12), libgcc-s1 (= 15.2.0-12), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgdk-pixbuf-2.0-0 (= 2.44.4+dfsg-1), libgdk-pixbuf2.0-common (= 2.44.4+dfsg-1), libgfortran5 (= 15.2.0-12), libgio-2.0-dev (= 2.86.3-4), libgio-2.0-dev-bin (= 2.86.3-4), libgirepository-2.0-0 (= 2.86.3-4), libglib2.0-0t64 (= 2.86.3-4), libglib2.0-bin (= 2.86.3-4), libglib2.0-data (= 2.86.3-4), libglib2.0-dev (= 2.86.3-4), libglib2.0-dev-bin (= 2.86.3-4), libgmp10 (= 2:6.3.0+dfsg-5), libgnutls30t64 (= 3.8.11-3), libgomp1 (= 15.2.0-12), libgraphite2-3 (= 1.3.14-11), libgssapi-krb5-2 (= 1.22.1-2), libharfbuzz0b (= 12.3.0-4), libheif-plugin-dav1d (= 1.20.2-2+b4), libheif-plugin-libde265 (= 1.20.2-2+b4), libheif1 (= 1.20.2-2+b4), libhogweed6t64 (= 3.10.2-1), libice-dev (= 2:1.1.1-1), libice6 (= 2:1.1.1-1), libicu-dev (= 76.1-4), libicu76 (= 76.1-4), libidn2-0 (= 2.3.8-4), libimagequant0 (= 4.4.1-1), libinchi-dev (= 1.07.3+dfsg-1), libinchi1.07 (= 1.07.3+dfsg-1), libio-pty-perl (= 1:1.20-1+b2), libipc-run-perl (= 20250809.0-1), libisl23 (= 0.27-1), libitm1 (= 15.2.0-12), libjansson4 (= 2.14-2+b4), libjbig0 (= 2.1-6.1+b2), libjpeg62-turbo (= 1:2.1.5-4), libjs-sphinxdoc (= 8.2.3-12), libjson-perl (= 4.10000-1), libjsoncpp26 (= 1.9.6-5), libk5crypto3 (= 1.22.1-2), libkeyutils1 (= 1.6.3-6), libkpathsea6 (= 2025.20250727.75242+ds-5), libkrb5-3 (= 1.22.1-2), libkrb5support0 (= 1.22.1-2), liblapack3 (= 3.12.1-7), liblcms2-2 (= 2.17-1), libldap2 (= 2.6.10+dfsg-1), liblerc4 (= 4.0.0+ds-5), libllvm21 (= 1:21.1.8-1+b1), liblqr-1-0 (= 0.4.2-2.2), liblsan0 (= 15.2.0-12), libltdl7 (= 2.5.4-9), liblua5.4-0 (= 5.4.8-1), liblz4-1 (= 1.10.0-6), liblzma-dev (= 5.8.2-1), liblzma5 (= 5.8.2-1), liblzo2-2 (= 2.10-3+b1), libmaeparser-dev (= 1.3.3-3), libmaeparser1 (= 1.3.3-3), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmagickcore-7.q16-10 (= 8:7.1.2.12+dfsg1-1), libmagickwand-7.q16-10 (= 8:7.1.2.12+dfsg1-1), libmd0 (= 1.1.0-2+b1), libmount-dev (= 2.41.3-3), libmount1 (= 2.41.3-3), libmpc3 (= 1.3.1-2), libmpfi0 (= 1.5.4+ds-4), libmpfr6 (= 4.2.2-2), libncurses-dev (= 6.6+20251231-1), libncurses6 (= 6.6+20251231-1), libncursesw6 (= 6.6+20251231-1), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-ossl0 (= 1.16.0-1), libnuma1 (= 2.0.19-1), libobjc-15-dev (= 15.2.0-12), libobjc4 (= 15.2.0-12), libopenjp2-7 (= 2.5.4-1), libp11-kit0 (= 0.25.10-1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpango-1.0-0 (= 1.57.0-1), libpangocairo-1.0-0 (= 1.57.0-1), libpangoft2-1.0-0 (= 1.57.0-1), libpaper-utils (= 2.2.5-0.3+b3), libpaper2 (= 2.2.5-0.3+b3), libpcre2-16-0 (= 10.46-1), libpcre2-32-0 (= 10.46-1), libpcre2-8-0 (= 10.46-1), libpcre2-dev (= 10.46-1), libpcre2-posix3 (= 10.46-1), libpdfbox-java (= 1:1.8.16-5), libperl5.40 (= 5.40.1-7), libpfm4 (= 4.13.0+git106-g3e4031b-1), libpipeline1 (= 1.5.8-2), libpixman-1-0 (= 0.46.4-1), libpixman-1-dev (= 0.46.4-1), libpkgconf3 (= 1.8.1-4), libpng-dev (= 1.6.53-1), libpng16-16t64 (= 1.6.53-1), libpotrace0 (= 1.16-2+b2), libpq-dev (= 18.1-2), libpq5 (= 18.1-2), libproc2-0 (= 2:4.0.4-9), libpsl5t64 (= 0.21.2-1.1+b1), libptexenc1 (= 2025.20250727.75242+ds-5), libpython3-dev (= 3.13.9-3), libpython3-stdlib (= 3.13.9-3), libpython3.13 (= 3.13.11-1+b1), libpython3.13-dev (= 3.13.11-1+b1), libpython3.13-minimal (= 3.13.11-1+b1), libpython3.13-stdlib (= 3.13.11-1+b1), libquadmath0 (= 15.2.0-12), libraqm0 (= 0.10.3-1), librav1e0.8 (= 0.8.1-7), libraw23t64 (= 0.21.5b-1), libreadline8t64 (= 8.3-3), librhash1 (= 1.4.6-1.1), librsvg2-2 (= 2.61.3+dfsg-3), librsvg2-bin (= 2.61.3+dfsg-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2+b1), libselinux-dev (= 3.9-4+b1), libselinux1 (= 3.9-4+b1), libsemanage-common (= 3.9-1), libsemanage2 (= 3.9-1+b1), libsepol-dev (= 3.9-2), libsepol2 (= 3.9-2), libsframe2 (= 2.45.50.20251209-1), libsharpyuv0 (= 1.5.0-0.1), libsm-dev (= 2:1.2.6-1), libsm6 (= 2:1.2.6-1), libsmartcols1 (= 2.41.3-3), libspdlog1.15 (= 1:1.15.3+ds-1), libsqlite3-0 (= 3.46.1-8), libsqlite3-dev (= 3.46.1-8), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.4-1), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-12), libstdc++6 (= 15.2.0-12), libsvtav1enc2 (= 2.3.0+dfsg-1), libsynctex2 (= 2025.20250727.75242+ds-5), libsysprof-capture-4-dev (= 49.0-5), libsystemd0 (= 259-1), libtasn1-6 (= 4.20.0-2), libteckit0 (= 2.5.13+ds-1), libtexlua53-5 (= 2025.20250727.75242+ds-5), libtext-charwidth-perl (= 0.04-11+b4), libtext-wrapi18n-perl (= 0.06-10), libthai-data (= 0.1.30-1), libthai0 (= 0.1.30-1), libtiff6 (= 4.7.1-1), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-9), libtsan2 (= 15.2.0-12), libubsan1 (= 15.2.0-12), libuchardet0 (= 0.0.8-2), libudev1 (= 259-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41.3-3), libuv1t64 (= 1.51.0-2), libwebp7 (= 1.5.0-0.1), libwebpdemux2 (= 1.5.0-0.1), libwebpmux3 (= 1.5.0-0.1), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libx11-dev (= 2:1.8.12-1), libxapian30 (= 1.4.29-3), libxau-dev (= 1:1.0.11-1), libxau6 (= 1:1.0.11-1), libxaw7 (= 2:1.0.16-1), libxcb-render0 (= 1.17.0-2+b1), libxcb-render0-dev (= 1.17.0-2+b1), libxcb-shm0 (= 1.17.0-2+b1), libxcb-shm0-dev (= 1.17.0-2+b1), libxcb1 (= 1.17.0-2+b1), libxcb1-dev (= 1.17.0-2+b1), libxdmcp-dev (= 1:1.1.5-2), libxdmcp6 (= 1:1.1.5-2), libxext-dev (= 2:1.3.4-1+b3), libxext6 (= 2:1.3.4-1+b3), libxi6 (= 2:1.8.2-2), libxml2-16 (= 2.15.1+dfsg-2+b1), libxml2-dev (= 2.15.1+dfsg-2+b1), libxmu6 (= 2:1.1.3-4), libxpm4 (= 1:3.5.17-1+b3), libxrender-dev (= 1:0.9.12-1), libxrender1 (= 1:0.9.12-1), libxt6t64 (= 1:1.2.1-1.3), libxxhash0 (= 0.8.3-2), libyaml-0-2 (= 0.2.5-2+b1), libyuv0 (= 0.0.1922.20260106-1), libz3-4 (= 4.13.3-1), libz3-dev (= 4.13.3-1), libzstd1 (= 1.5.7+dfsg-3), libzzip-0-13t64 (= 0.13.78+dfsg.1-0.2), linux-libc-dev (= 6.18.3-1), llvm-21 (= 1:21.1.8-1+b1), llvm-21-dev (= 1:21.1.8-1+b1), llvm-21-linker-tools (= 1:21.1.8-1+b1), llvm-21-runtime (= 1:21.1.8-1+b1), llvm-21-tools (= 1:21.1.8-1+b1), lmodern (= 2.005-1), login.defs (= 1:4.19.0-4), m4 (= 1.4.20-2), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-2), media-types (= 14.0.0), native-architecture (= 0.2.6), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), netbase (= 6.5), openssl (= 3.5.4-1), openssl-provider-legacy (= 3.5.4-1), pandoc (= 3.1.11.1+ds-4), pandoc-data (= 3.1.11.1-3), passwd (= 1:4.19.0-4), patch (= 2.8-2), perl (= 5.40.1-7), perl-base (= 5.40.1-7), perl-modules-5.40 (= 5.40.1-7), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.22), postgresql-client-18 (= 18.1-2), postgresql-client-common (= 287), postgresql-common (= 287), postgresql-common-dev (= 287), postgresql-server-dev-18 (= 18.1-2), postgresql-server-dev-all (= 287), preview-latex-style (= 13.2-1.1), procps (= 2:4.0.4-9), python-babel-localedata (= 2.17.0-2), python3 (= 3.13.9-3), python3-alabaster (= 0.7.16-0.1), python3-babel (= 2.17.0-2), python3-certifi (= 2026.1.4+ds-1), python3-chardet (= 5.2.0+dfsg-2), python3-charset-normalizer (= 3.4.4-2), python3-commonmark (= 0.9.1-8), python3-dateutil (= 2.9.0-4), python3-defusedxml (= 0.7.1-3), python3-dev (= 3.13.9-3), python3-docutils (= 0.22.4+dfsg-1), python3-greenlet (= 3.2.4-3), python3-idna (= 3.10-1), python3-imagesize (= 1.4.1-1), python3-iniconfig (= 2.1.0-2), python3-jinja2 (= 3.1.6-1), python3-linkify-it (= 2.0.3-1), python3-markdown-it (= 3.0.0-3), python3-markupsafe (= 3.0.3-1+b1), python3-mdit-py-plugins (= 0.5.0-1), python3-mdurl (= 0.1.2-1), python3-minimal (= 3.13.9-3), python3-myst-parser (= 4.0.1-1), python3-numpy (= 1:2.3.5+ds-3), python3-numpy-dev (= 1:2.3.5+ds-3), python3-packaging (= 25.0-2), python3-pandas (= 2.3.3+dfsg-3), python3-pandas-lib (= 2.3.3+dfsg-3), python3-pil (= 12.0.0-1+b1), python3-pluggy (= 1.6.0-2), python3-pygments (= 2.19.2+dfsg-1), python3-pytest (= 9.0.2-2), python3-pytz (= 2025.2-5), python3-recommonmark (= 0.7.1+ds-8), python3-requests (= 2.32.5+dfsg-1), python3-roman-numerals (= 4.1.0-1), python3-snowballstemmer (= 3.0.1-1), python3-sphinx (= 8.2.3-12), python3-sqlalchemy (= 2.0.45+ds1-1), python3-typing-extensions (= 4.15.0-2), python3-uc-micro (= 1.0.3-1), python3-urllib3 (= 2.5.0-1.1), python3-yaml (= 6.0.3-1), python3.13 (= 3.13.11-1+b1), python3.13-dev (= 3.13.11-1+b1), python3.13-minimal (= 3.13.11-1+b1), rapidjson-dev (= 1.1.0+dfsg2-7.6), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sgml-base (= 1.31+nmu1), shared-mime-info (= 2.4-5+b3), sphinx-common (= 8.2.3-12), ssl-cert (= 1.1.3), sysvinit-utils (= 3.15-6), t1utils (= 1.41-4), tar (= 1.35+dfsg-3.1), tex-common (= 6.20), tex-gyre (= 20180621-7), texlive-base (= 2025.20251127-1), texlive-binaries (= 2025.20250727.75242+ds-5), texlive-fonts-recommended (= 2025.20251127-1), texlive-latex-base (= 2025.20251127-1), texlive-latex-extra (= 2025.20251127-2), texlive-latex-recommended (= 2025.20251127-1), texlive-luatex (= 2025.20251127-1), texlive-pictures (= 2025.20251127-1), tzdata (= 2025c-3), ucf (= 3.0052), util-linux (= 2.41.3-3), uuid-dev (= 2.41.3-3), x11-common (= 1:7.7+26), x11proto-dev (= 2024.1-1), xdg-utils (= 1.2.1-2), xfonts-encodings (= 1:1.0.4-2.2), xfonts-utils (= 1:7.7+7), xml-core (= 0.19), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.6.0-1), xz-utils (= 5.8.2-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b2), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b2) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1761040834" +------------------------------------------------------------------------------+ | Package contents Thu, 15 Jan 2026 04:06:38 +0000 | +------------------------------------------------------------------------------+ librdkit-dev_202503.6-3_ppc64el.deb ----------------------------------- new Debian package, version 2.0. size 494460 bytes: control archive=10916 bytes. 1507 bytes, 37 lines control 32095 bytes, 376 lines md5sums Package: librdkit-dev Source: rdkit Version: 202503.6-3 Architecture: ppc64el Maintainer: Debichem Team Installed-Size: 2785 Depends: librdkit1t64 (= 202503.6-3) Section: libdevel Priority: optional Homepage: http://www.rdkit.org Description: Collection of cheminformatics and machine-learning software (development files) RDKit is a Python/C++ based cheminformatics and machine-learning software environment. Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan algorithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. . This package contains the header files. drwxr-xr-x root/root 0 2025-10-21 10:00 ./ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/Catalogs/ -rw-r--r-- root/root 15921 2025-08-29 13:10 ./usr/include/rdkit/Catalogs/Catalog.h -rw-r--r-- root/root 1384 2025-08-29 13:10 ./usr/include/rdkit/Catalogs/CatalogEntry.h -rw-r--r-- root/root 1243 2025-08-29 13:10 ./usr/include/rdkit/Catalogs/CatalogParams.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/ChemicalFeatures/ -rw-r--r-- root/root 1052 2025-08-29 13:10 ./usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -rw-r--r-- root/root 2936 2025-08-29 13:10 ./usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/DataManip/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/DataManip/MetricMatrixCalc/ -rw-r--r-- root/root 1867 2025-08-29 13:10 ./usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -rw-r--r-- root/root 3532 2025-08-29 13:10 ./usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/DataStructs/ -rw-r--r-- root/root 11731 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/BitOps.h -rw-r--r-- root/root 2509 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/BitVect.h -rw-r--r-- root/root 1120 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/BitVectUtils.h -rw-r--r-- root/root 584 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/BitVects.h -rw-r--r-- root/root 897 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/DatastructsException.h -rw-r--r-- root/root 2775 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/DatastructsStreamOps.h -rw-r--r-- root/root 872 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/DiscreteDistMat.h -rw-r--r-- root/root 4395 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/DiscreteValueVect.h -rw-r--r-- root/root 3480 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/ExplicitBitVect.h -rw-r--r-- root/root 9536 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/FPBReader.h -rw-r--r-- root/root 7562 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/MultiFPBReader.h -rw-r--r-- root/root 4117 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/RealValueVect.h -rw-r--r-- root/root 3477 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/SparseBitVect.h -rw-r--r-- root/root 16947 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/SparseIntVect.h -rw-r--r-- root/root 1296 2025-08-29 13:10 ./usr/include/rdkit/DataStructs/base64.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/DistGeom/ -rw-r--r-- root/root 3225 2025-08-29 13:10 ./usr/include/rdkit/DistGeom/BoundsMatrix.h -rw-r--r-- root/root 2001 2025-08-29 13:10 ./usr/include/rdkit/DistGeom/ChiralSet.h -rw-r--r-- root/root 2964 2025-08-29 13:10 ./usr/include/rdkit/DistGeom/ChiralViolationContribs.h -rw-r--r-- root/root 8447 2025-08-29 13:10 ./usr/include/rdkit/DistGeom/DistGeomUtils.h -rw-r--r-- root/root 2194 2025-08-29 13:10 ./usr/include/rdkit/DistGeom/DistViolationContribs.h -rw-r--r-- root/root 2507 2025-08-29 13:10 ./usr/include/rdkit/DistGeom/FourthDimContribs.h -rw-r--r-- root/root 1310 2025-08-29 13:10 ./usr/include/rdkit/DistGeom/TriangleSmooth.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/Features/ -rw-r--r-- root/root 2898 2025-08-29 13:10 ./usr/include/rdkit/Features/Feature.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/ForceField/ -rw-r--r-- root/root 2174 2025-08-29 13:10 ./usr/include/rdkit/ForceField/AngleConstraint.h -rw-r--r-- root/root 3923 2025-08-29 13:10 ./usr/include/rdkit/ForceField/AngleConstraints.h -rw-r--r-- root/root 1116 2025-08-29 13:10 ./usr/include/rdkit/ForceField/Contrib.h -rw-r--r-- root/root 1917 2025-08-29 13:10 ./usr/include/rdkit/ForceField/DistanceConstraint.h -rw-r--r-- root/root 3519 2025-08-29 13:10 ./usr/include/rdkit/ForceField/DistanceConstraints.h -rw-r--r-- root/root 9291 2025-08-29 13:10 ./usr/include/rdkit/ForceField/ForceField.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/ForceField/MMFF/ -rw-r--r-- root/root 2958 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/AngleBend.h -rw-r--r-- root/root 603 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/AngleConstraint.h -rw-r--r-- root/root 2312 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/BondStretch.h -rw-r--r-- root/root 663 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/Contribs.h -rw-r--r-- root/root 618 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h -rw-r--r-- root/root 5271 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/Nonbonded.h -rw-r--r-- root/root 2448 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/OopBend.h -rw-r--r-- root/root 35334 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/Params.h -rw-r--r-- root/root 618 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/PositionConstraint.h -rw-r--r-- root/root 2490 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/StretchBend.h -rw-r--r-- root/root 3143 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/TorsionAngle.h -rw-r--r-- root/root 613 2025-08-29 13:10 ./usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h -rw-r--r-- root/root 1614 2025-08-29 13:10 ./usr/include/rdkit/ForceField/PositionConstraint.h -rw-r--r-- root/root 2630 2025-08-29 13:10 ./usr/include/rdkit/ForceField/TorsionConstraint.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/ForceField/UFF/ -rw-r--r-- root/root 3539 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/AngleBend.h -rw-r--r-- root/root 599 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/AngleConstraint.h -rw-r--r-- root/root 2573 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/BondStretch.h -rw-r--r-- root/root 623 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/Contribs.h -rw-r--r-- root/root 614 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/DistanceConstraint.h -rw-r--r-- root/root 1810 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/Inversion.h -rw-r--r-- root/root 3791 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/Inversions.h -rw-r--r-- root/root 2875 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/Nonbonded.h -rw-r--r-- root/root 4421 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/Params.h -rw-r--r-- root/root 614 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/PositionConstraint.h -rw-r--r-- root/root 4577 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/TorsionAngle.h -rw-r--r-- root/root 609 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/TorsionConstraint.h -rw-r--r-- root/root 1368 2025-08-29 13:10 ./usr/include/rdkit/ForceField/UFF/Utils.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/Geometry/ -rw-r--r-- root/root 1672 2025-08-29 13:10 ./usr/include/rdkit/Geometry/Grid3D.h -rw-r--r-- root/root 2027 2025-08-29 13:10 ./usr/include/rdkit/Geometry/GridUtils.h -rw-r--r-- root/root 449 2025-08-29 13:10 ./usr/include/rdkit/Geometry/Transform.h -rw-r--r-- root/root 2599 2025-08-29 13:10 ./usr/include/rdkit/Geometry/Transform2D.h -rw-r--r-- root/root 2915 2025-08-29 13:10 ./usr/include/rdkit/Geometry/Transform3D.h -rw-r--r-- root/root 8637 2025-08-29 13:10 ./usr/include/rdkit/Geometry/UniformGrid3D.h -rw-r--r-- root/root 8108 2025-08-29 13:10 ./usr/include/rdkit/Geometry/UniformRealValueGrid3D.h -rw-r--r-- root/root 3338 2025-08-29 13:10 ./usr/include/rdkit/Geometry/Utils.h -rw-r--r-- root/root 15628 2025-08-29 13:10 ./usr/include/rdkit/Geometry/point.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/Abbreviations/ -rw-r--r-- root/root 5462 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Abbreviations/Abbreviations.h -rw-r--r-- root/root 15694 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Atom.h -rw-r--r-- root/root 5673 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/AtomIterators.h -rw-r--r-- root/root 1513 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Atropisomers.h -rw-r--r-- root/root 12919 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Bond.h -rw-r--r-- root/root 2354 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/BondIterators.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/CIPLabeler/ -rw-r--r-- root/root 2836 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/CIPLabeler/CIPLabeler.h -rw-r--r-- root/root 628 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/CIPLabeler/TooManyNodesException.h -rw-r--r-- root/root 4425 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Canon.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ChemReactions/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ChemReactions/Enumerate/ -rw-r--r-- root/root 4684 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/Enumerate/CartesianProduct.h -rw-r--r-- root/root 6461 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/Enumerate/Enumerate.h -rw-r--r-- root/root 7015 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateBase.h -rw-r--r-- root/root 2599 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h -rw-r--r-- root/root 2728 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h -rw-r--r-- root/root 8572 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h -rw-r--r-- root/root 5284 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSample.h -rw-r--r-- root/root 5940 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h -rw-r--r-- root/root 2874 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h -rw-r--r-- root/root 19670 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/Reaction.h -rw-r--r-- root/root 5858 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -rw-r--r-- root/root 18153 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -rw-r--r-- root/root 4353 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -rw-r--r-- root/root 4944 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -rw-r--r-- root/root 3151 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -rw-r--r-- root/root 6887 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ChemTransforms/ -rw-r--r-- root/root 12019 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -rw-r--r-- root/root 6212 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -rw-r--r-- root/root 721 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenterJSONParser.h -rw-r--r-- root/root 16239 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Chirality.h -rw-r--r-- root/root 5274 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Conformer.h -rw-r--r-- root/root 7003 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/CoordGen.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/Depictor/ -rw-r--r-- root/root 13357 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Depictor/DepictUtils.h -rw-r--r-- root/root 19471 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -rw-r--r-- root/root 21009 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Depictor/RDDepictor.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/Deprotect/ -rw-r--r-- root/root 3471 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Deprotect/Deprotect.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/Descriptors/ -rw-r--r-- root/root 2073 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -rw-r--r-- root/root 2128 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/AUTOCORR3D.h -rw-r--r-- root/root 1607 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/AtomFeat.h -rw-r--r-- root/root 2369 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/BCUT.h -rw-r--r-- root/root 8540 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -rw-r--r-- root/root 1864 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/CoulombMat.h -rw-r--r-- root/root 4679 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/Crippen.h -rw-r--r-- root/root 3027 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/DCLV.h -rw-r--r-- root/root 2116 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -rw-r--r-- root/root 2138 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/EEM.h -rw-r--r-- root/root 2194 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/GETAWAY.h -rw-r--r-- root/root 6919 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/Lipinski.h -rw-r--r-- root/root 2170 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/MORSE.h -rw-r--r-- root/root 1141 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/MQN.h -rw-r--r-- root/root 2852 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -rw-r--r-- root/root 2814 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -rw-r--r-- root/root 749 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/MolDescriptors3D.h -rw-r--r-- root/root 4788 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/MolSurf.h -rw-r--r-- root/root 1297 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/OxidationNumbers.h -rw-r--r-- root/root 2572 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/PBF.h -rw-r--r-- root/root 5266 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/PMI.h -rw-r--r-- root/root 4874 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/Property.h -rw-r--r-- root/root 2159 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/RDF.h -rw-r--r-- root/root 3035 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -rw-r--r-- root/root 4874 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -rw-r--r-- root/root 2178 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Descriptors/WHIM.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/DetermineBonds/ -rw-r--r-- root/root 5211 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/DetermineBonds/DetermineBonds.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/DistGeomHelpers/ -rw-r--r-- root/root 3267 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -rw-r--r-- root/root 24564 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/EnumerateStereoisomers/ -rw-r--r-- root/root 4870 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/EnumerateStereoisomers/EnumerateStereoisomers.h -rw-r--r-- root/root 3566 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/EnumerateStereoisomers/Flippers.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/FMCS/ -rw-r--r-- root/root 9796 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FMCS/FMCS.h -rw-r--r-- root/root 1343 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FMCS/Graph.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/FileParsers/ -rw-r--r-- root/root 6676 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/CDXMLParser.h -rw-r--r-- root/root 10790 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -rw-r--r-- root/root 21493 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/FileParsers.h -rw-r--r-- root/root 10856 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/FileWriters.h -rw-r--r-- root/root 6504 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/GeneralFileReader.h -rw-r--r-- root/root 4613 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -rw-r--r-- root/root 16139 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h -rw-r--r-- root/root 18434 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/MolSupplier.v1API.h -rw-r--r-- root/root 14218 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/MolWriters.h -rw-r--r-- root/root 6921 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/MultithreadedMolSupplier.h -rw-r--r-- root/root 5531 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/MultithreadedSDMolSupplier.h -rw-r--r-- root/root 5418 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.h -rw-r--r-- root/root 9773 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/PNGParser.h -rw-r--r-- root/root 4093 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -rw-r--r-- root/root 1360 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/FilterCatalog/ -rw-r--r-- root/root 9486 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -rw-r--r-- root/root 9023 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -rw-r--r-- root/root 5334 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -rw-r--r-- root/root 20279 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -rw-r--r-- root/root 2474 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/Fingerprints/ -rw-r--r-- root/root 7309 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h -rw-r--r-- root/root 12649 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -rw-r--r-- root/root 19504 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h -rw-r--r-- root/root 5558 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -rw-r--r-- root/root 6919 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -rw-r--r-- root/root 774 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/MACCS.h -rw-r--r-- root/root 11133 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/MHFP.h -rw-r--r-- root/root 9725 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -rw-r--r-- root/root 12594 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h -rw-r--r-- root/root 6670 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h -rw-r--r-- root/root 5304 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/ -rw-r--r-- root/root 3685 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleContribs.h -rw-r--r-- root/root 2258 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -rw-r--r-- root/root 2177 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -rw-r--r-- root/root 5229 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/FFConvenience.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/ -rw-r--r-- root/root 10191 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -rw-r--r-- root/root 5376 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -rw-r--r-- root/root 4305 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/ -rw-r--r-- root/root 2111 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -rw-r--r-- root/root 5050 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -rw-r--r-- root/root 3360 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/FragCatalog/ -rw-r--r-- root/root 817 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -rw-r--r-- root/root 3094 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -rw-r--r-- root/root 3602 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -rw-r--r-- root/root 2605 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -rw-r--r-- root/root 1018 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/GeneralizedSubstruct/ -rw-r--r-- root/root 4309 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/GeneralizedSubstruct/XQMol.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/GenericGroups/ -rw-r--r-- root/root 19934 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/GenericGroups/GenericGroups.h -rw-r--r-- root/root 479 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/GraphMol.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MMPA/ -rw-r--r-- root/root 3391 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MMPA/MMPA.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MarvinParse/ -rw-r--r-- root/root 8338 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MarvinParse/MarvinParser.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolAlign/ -rw-r--r-- root/root 14747 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -rw-r--r-- root/root 13596 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -rw-r--r-- root/root 5903 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolBundle.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolCatalog/ -rw-r--r-- root/root 449 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -rw-r--r-- root/root 2926 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -rw-r--r-- root/root 1120 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolChemicalFeatures/ -rw-r--r-- root/root 2126 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -rw-r--r-- root/root 3290 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -rw-r--r-- root/root 2142 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -rw-r--r-- root/root 2783 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolDraw2D/ -rw-r--r-- root/root 26533 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h -rw-r--r-- root/root 3415 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h -rw-r--r-- root/root 16793 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DHelpers.h -rw-r--r-- root/root 2332 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DJS.h -rw-r--r-- root/root 3210 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h -rw-r--r-- root/root 11361 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -rw-r--r-- root/root 3347 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolEnumerator/ -rw-r--r-- root/root 4981 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolEnumerator/LinkNode.h -rw-r--r-- root/root 9311 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolEnumerator/MolEnumerator.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolHash/ -rw-r--r-- root/root 363 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolHash/MolHash.h -rw-r--r-- root/root 2031 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolHash/nmmolhash.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolInteractionFields/ -rw-r--r-- root/root 22324 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolInteractionFields/MIFDescriptors.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolInterchange/ -rw-r--r-- root/root 3291 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolInterchange/MolInterchange.h -rw-r--r-- root/root 2724 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolInterchange/details.h -rw-r--r-- root/root 53997 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolOps.h -rw-r--r-- root/root 11390 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolPickler.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolProcessing/ -rw-r--r-- root/root 1275 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolProcessing/MolProcessing.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolStandardize/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/ -rw-r--r-- root/root 1488 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h -rw-r--r-- root/root 1796 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h -rw-r--r-- root/root 1141 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h -rw-r--r-- root/root 5681 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/Charge.h -rw-r--r-- root/root 3627 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/Fragment.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/ -rw-r--r-- root/root 1584 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h -rw-r--r-- root/root 1750 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h -rw-r--r-- root/root 1074 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h -rw-r--r-- root/root 2981 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/Metal.h -rw-r--r-- root/root 12579 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -rw-r--r-- root/root 3528 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/Normalize.h -rw-r--r-- root/root 10588 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/Pipeline.h -rw-r--r-- root/root 17988 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/Tautomer.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/ -rw-r--r-- root/root 1568 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h -rw-r--r-- root/root 2736 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h -rw-r--r-- root/root 1530 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/ -rw-r--r-- root/root 1525 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h -rw-r--r-- root/root 2131 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h -rw-r--r-- root/root 1161 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h -rw-r--r-- root/root 11341 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolStandardize/Validate.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/MolTransforms/ -rw-r--r-- root/root 9519 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -rw-r--r-- root/root 4996 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/MonomerInfo.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/PartialCharges/ -rw-r--r-- root/root 883 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -rw-r--r-- root/root 2612 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -rw-r--r-- root/root 12217 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/PeriodicTable.h -rw-r--r-- root/root 5042 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/QueryAtom.h -rw-r--r-- root/root 4454 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/QueryBond.h -rw-r--r-- root/root 40822 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/QueryOps.h -rw-r--r-- root/root 852 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RDKitBase.h -rw-r--r-- root/root 581 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RDKitQueries.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/RGroupDecomposition/ -rw-r--r-- root/root 5130 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -rw-r--r-- root/root 720 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompJSONParsers.h -rw-r--r-- root/root 4322 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompParams.h -rw-r--r-- root/root 27834 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ROMol.h -rw-r--r-- root/root 6808 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RWMol.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/RascalMCES/ -rw-r--r-- root/root 2593 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RascalMCES/RascalClusterOptions.h -rw-r--r-- root/root 2682 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RascalMCES/RascalMCES.h -rw-r--r-- root/root 4740 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RascalMCES/RascalOptions.h -rw-r--r-- root/root 5458 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RascalMCES/RascalResult.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ReducedGraphs/ -rw-r--r-- root/root 2712 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -rw-r--r-- root/root 9598 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Resonance.h -rw-r--r-- root/root 10706 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/RingInfo.h -rw-r--r-- root/root 3460 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Rings.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/SLNParse/ -rw-r--r-- root/root 3418 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -rw-r--r-- root/root 2796 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SLNParse/SLNParse.h -rw-r--r-- root/root 11545 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -rw-r--r-- root/root 4232 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SanitException.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ScaffoldNetwork/ -rw-r--r-- root/root 6670 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/ShapeHelpers/ -rw-r--r-- root/root 2928 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -rw-r--r-- root/root 11879 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/SmilesParse/ -rw-r--r-- root/root 1569 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SmilesParse/CanonicalizeStereoGroups.h -rw-r--r-- root/root 3223 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -rw-r--r-- root/root 970 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SmilesParse/SmilesJSONParsers.h -rw-r--r-- root/root 9142 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -rw-r--r-- root/root 3395 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -rw-r--r-- root/root 15383 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -rw-r--r-- root/root 4019 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/StereoGroup.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/Subgraphs/ -rw-r--r-- root/root 2306 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -rw-r--r-- root/root 6682 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -rw-r--r-- root/root 10541 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SubstanceGroup.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/Substruct/ -rw-r--r-- root/root 10828 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h -rw-r--r-- root/root 2171 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/SubstructLibrary/ -rw-r--r-- root/root 1458 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SubstructLibrary/PatternFactory.h -rw-r--r-- root/root 36428 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h -rw-r--r-- root/root 8146 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/SynthonSpaceSearch/ -rw-r--r-- root/root 2612 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SynthonSpaceSearch/SearchResults.h -rw-r--r-- root/root 3532 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SynthonSpaceSearch/Synthon.h -rw-r--r-- root/root 6134 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSet.h -rw-r--r-- root/root 17007 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpace.h -rw-r--r-- root/root 2199 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceFingerprintSearcher.h -rw-r--r-- root/root 1721 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceRascalSearcher.h -rw-r--r-- root/root 5481 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceSearcher.h -rw-r--r-- root/root 2904 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceSubstructureSearcher.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/TautomerQuery/ -rw-r--r-- root/root 5443 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/TautomerQuery/TautomerQuery.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/GraphMol/Trajectory/ -rw-r--r-- root/root 2259 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Trajectory/Snapshot.h -rw-r--r-- root/root 4447 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/Trajectory/Trajectory.h -rw-r--r-- root/root 2464 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/atomic_data.h -rw-r--r-- root/root 373 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/details.h -rw-r--r-- root/root 5797 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/inchi.h -rw-r--r-- root/root 29273 2025-08-29 13:10 ./usr/include/rdkit/GraphMol/new_canon.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/Numerics/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/Numerics/Alignment/ -rw-r--r-- root/root 1605 2025-08-29 13:10 ./usr/include/rdkit/Numerics/Alignment/AlignPoints.h -rw-r--r-- root/root 10355 2025-08-29 13:10 ./usr/include/rdkit/Numerics/Conrec.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/Numerics/EigenSolvers/ -rw-r--r-- root/root 2106 2025-08-29 13:10 ./usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -rw-r--r-- root/root 10819 2025-08-29 13:10 ./usr/include/rdkit/Numerics/Matrix.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/Numerics/Optimizer/ -rw-r--r-- root/root 12364 2025-08-29 13:10 ./usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h -rw-r--r-- root/root 2445 2025-08-29 13:10 ./usr/include/rdkit/Numerics/SquareMatrix.h -rw-r--r-- root/root 10168 2025-08-29 13:10 ./usr/include/rdkit/Numerics/SymmMatrix.h -rw-r--r-- root/root 8593 2025-08-29 13:10 ./usr/include/rdkit/Numerics/Vector.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/Query/ -rw-r--r-- root/root 1804 2025-08-29 13:10 ./usr/include/rdkit/Query/AndQuery.h -rw-r--r-- root/root 2666 2025-08-29 13:10 ./usr/include/rdkit/Query/EqualityQuery.h -rw-r--r-- root/root 2342 2025-08-29 13:10 ./usr/include/rdkit/Query/GreaterEqualQuery.h -rw-r--r-- root/root 2263 2025-08-29 13:10 ./usr/include/rdkit/Query/GreaterQuery.h -rw-r--r-- root/root 2316 2025-08-29 13:10 ./usr/include/rdkit/Query/LessEqualQuery.h -rw-r--r-- root/root 2239 2025-08-29 13:10 ./usr/include/rdkit/Query/LessQuery.h -rw-r--r-- root/root 2556 2025-08-29 13:10 ./usr/include/rdkit/Query/NullQueryAlgebra.h -rw-r--r-- root/root 1795 2025-08-29 13:10 ./usr/include/rdkit/Query/OrQuery.h -rw-r--r-- root/root 6855 2025-08-29 13:10 ./usr/include/rdkit/Query/Query.h -rw-r--r-- root/root 839 2025-08-29 13:10 ./usr/include/rdkit/Query/QueryObjects.h -rw-r--r-- root/root 3765 2025-08-29 13:10 ./usr/include/rdkit/Query/RangeQuery.h -rw-r--r-- root/root 2690 2025-08-29 13:10 ./usr/include/rdkit/Query/SetQuery.h -rw-r--r-- root/root 1883 2025-08-29 13:10 ./usr/include/rdkit/Query/XOrQuery.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/RDBoost/ -rw-r--r-- root/root 2236 2025-08-29 13:10 ./usr/include/rdkit/RDBoost/PySequenceHolder.h -rw-r--r-- root/root 13476 2025-08-29 13:10 ./usr/include/rdkit/RDBoost/Wrap.h -rw-r--r-- root/root 342 2025-08-29 13:10 ./usr/include/rdkit/RDBoost/boost_numpy.h -rw-r--r-- root/root 5719 2025-08-29 13:10 ./usr/include/rdkit/RDBoost/list_indexing_suite.hpp -rw-r--r-- root/root 212 2025-08-29 13:10 ./usr/include/rdkit/RDBoost/pyint_api.h -rw-r--r-- root/root 329 2025-08-29 13:10 ./usr/include/rdkit/RDBoost/python.h -rw-r--r-- root/root 18871 2025-08-29 13:10 ./usr/include/rdkit/RDBoost/python_streambuf.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/RDGeneral/ -rw-r--r-- root/root 1144 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/BadFileException.h -rw-r--r-- root/root 597 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/BetterEnums.h -rw-r--r-- root/root 3026 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/BoostEndInclude.h -rw-r--r-- root/root 4116 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/BoostStartInclude.h -rw-r--r-- root/root 3457 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/ConcurrentQueue.h -rw-r--r-- root/root 2290 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/ControlCHandler.h -rw-r--r-- root/root 10321 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/Dict.h -rw-r--r-- root/root 2155 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/Exceptions.h -rw-r--r-- root/root 1101 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/FileParseException.h -rw-r--r-- root/root 7330 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/Invariant.h -rw-r--r-- root/root 2199 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/LocaleSwitcher.h -rw-r--r-- root/root 6109 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/RDAny.h -rw-r--r-- root/root 1028 2025-10-21 10:00 ./usr/include/rdkit/RDGeneral/RDConfig.h -rw-r--r-- root/root 1335 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/RDExportMacros.h -rw-r--r-- root/root 4320 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/RDLog.h -rw-r--r-- root/root 5229 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/RDProps.h -rw-r--r-- root/root 917 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/RDThreads.h -rw-r--r-- root/root 15850 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/RDValue-doublemagic.h -rw-r--r-- root/root 15367 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/RDValue-taggedunion.h -rw-r--r-- root/root 9048 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/RDValue.h -rw-r--r-- root/root 1728 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/Ranking.h -rw-r--r-- root/root 17835 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/StreamOps.h -rw-r--r-- root/root 67566 2025-10-21 10:00 ./usr/include/rdkit/RDGeneral/enum.h -rw-r--r-- root/root 19273 2025-10-21 10:00 ./usr/include/rdkit/RDGeneral/export.h -rw-r--r-- root/root 3779 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/hanoiSort.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/RDGeneral/hash/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/RDGeneral/hash/detail/ -rw-r--r-- root/root 4451 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/hash/detail/float_functions.hpp -rw-r--r-- root/root 4929 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/hash/detail/hash_float.hpp -rw-r--r-- root/root 4138 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/hash/extensions.hpp -rw-r--r-- root/root 15699 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/hash/hash.hpp -rw-r--r-- root/root 1240 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/hash/hash_fwd.hpp -rw-r--r-- root/root 5844 2025-10-21 10:00 ./usr/include/rdkit/RDGeneral/test.h -rw-r--r-- root/root 17122 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/types.h -rw-r--r-- root/root 3081 2025-08-29 13:10 ./usr/include/rdkit/RDGeneral/utils.h -rw-r--r-- root/root 946 2025-10-21 10:00 ./usr/include/rdkit/RDGeneral/versions.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/RDStreams/ -rw-r--r-- root/root 430 2025-08-29 13:10 ./usr/include/rdkit/RDStreams/streams.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/include/rdkit/SimDivPickers/ -rw-r--r-- root/root 2720 2025-08-29 13:10 ./usr/include/rdkit/SimDivPickers/DistPicker.h -rw-r--r-- root/root 3695 2025-08-29 13:10 ./usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -rw-r--r-- root/root 14014 2025-08-29 13:10 ./usr/include/rdkit/SimDivPickers/LeaderPicker.h -rw-r--r-- root/root 10132 2025-08-29 13:10 ./usr/include/rdkit/SimDivPickers/MaxMinPicker.h drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/cmake/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/cmake/rdkit/ -rw-r--r-- root/root 1865 2025-10-21 10:00 ./usr/lib/cmake/rdkit/rdkit-config-version.cmake -rw-r--r-- root/root 1560 2025-10-21 10:00 ./usr/lib/cmake/rdkit/rdkit-config.cmake -rw-r--r-- root/root 33629 2025-10-21 10:00 ./usr/lib/cmake/rdkit/rdkit-targets-none.cmake -rw-r--r-- root/root 23564 2025-10-21 10:00 ./usr/lib/cmake/rdkit/rdkit-targets.cmake drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/cmake/rdkitpython/ -rw-r--r-- root/root 1865 2025-10-21 10:00 ./usr/lib/cmake/rdkitpython/rdkitpython-config-version.cmake -rw-r--r-- root/root 336 2025-10-21 10:00 ./usr/lib/cmake/rdkitpython/rdkitpython-config.cmake -rw-r--r-- root/root 865 2025-10-21 10:00 ./usr/lib/cmake/rdkitpython/rdkitpython-targets-none.cmake -rw-r--r-- root/root 5685 2025-10-21 10:00 ./usr/lib/cmake/rdkitpython/rdkitpython-targets.cmake lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitAbbreviations.so -> libRDKitAbbreviations.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitAlignment.so -> libRDKitAlignment.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitCIPLabeler.so -> libRDKitCIPLabeler.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitCatalogs.so -> libRDKitCatalogs.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitChemReactions.so -> libRDKitChemReactions.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitChemTransforms.so -> libRDKitChemTransforms.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitChemicalFeatures.so -> libRDKitChemicalFeatures.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDataStructs.so -> libRDKitDataStructs.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDepictor.so -> libRDKitDepictor.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDeprotect.so -> libRDKitDeprotect.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDescriptors.so -> libRDKitDescriptors.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDetermineBonds.so -> libRDKitDetermineBonds.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDistGeomHelpers.so -> libRDKitDistGeomHelpers.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDistGeometry.so -> libRDKitDistGeometry.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitEigenSolvers.so -> libRDKitEigenSolvers.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitEnumerateStereoisomers.so -> libRDKitEnumerateStereoisomers.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitFMCS.so -> libRDKitFMCS.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitFileParsers.so -> libRDKitFileParsers.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitFilterCatalog.so -> libRDKitFilterCatalog.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitFingerprints.so -> libRDKitFingerprints.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitForceField.so -> libRDKitForceField.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitForceFieldHelpers.so -> libRDKitForceFieldHelpers.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitFragCatalog.so -> libRDKitFragCatalog.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitGeneralizedSubstruct.so -> libRDKitGeneralizedSubstruct.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitGenericGroups.so -> libRDKitGenericGroups.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitGraphMol.so -> libRDKitGraphMol.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitInfoTheory.so -> libRDKitInfoTheory.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMMPA.so -> libRDKitMMPA.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMarvinParser.so -> libRDKitMarvinParser.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolAlign.so -> libRDKitMolAlign.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolCatalog.so -> libRDKitMolCatalog.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolChemicalFeatures.so -> libRDKitMolChemicalFeatures.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolDraw2D.so -> libRDKitMolDraw2D.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolEnumerator.so -> libRDKitMolEnumerator.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolHash.so -> libRDKitMolHash.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolInteractionFields.so -> libRDKitMolInteractionFields.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolInterchange.so -> libRDKitMolInterchange.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolProcessing.so -> libRDKitMolProcessing.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolStandardize.so -> libRDKitMolStandardize.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolTransforms.so -> libRDKitMolTransforms.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitO3AAlign.so -> libRDKitO3AAlign.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitOptimizer.so -> libRDKitOptimizer.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitPartialCharges.so -> libRDKitPartialCharges.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRDBoost.so -> libRDKitRDBoost.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRDGeneral.so -> libRDKitRDGeneral.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRDGeometryLib.so -> libRDKitRDGeometryLib.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRDInchiLib.so -> libRDKitRDInchiLib.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRDStreams.so -> libRDKitRDStreams.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRGroupDecomposition.so -> libRDKitRGroupDecomposition.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRascalMCES.so -> libRDKitRascalMCES.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitReducedGraphs.so -> libRDKitReducedGraphs.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSLNParse.so -> libRDKitSLNParse.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitScaffoldNetwork.so -> libRDKitScaffoldNetwork.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitShapeHelpers.so -> libRDKitShapeHelpers.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSimDivPickers.so -> libRDKitSimDivPickers.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSmilesParse.so -> libRDKitSmilesParse.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSubgraphs.so -> libRDKitSubgraphs.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSubstructLibrary.so -> libRDKitSubstructLibrary.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSubstructMatch.so -> libRDKitSubstructMatch.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSynthonSpaceSearch.so -> libRDKitSynthonSpaceSearch.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitTautomerQuery.so -> libRDKitTautomerQuery.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitTrajectory.so -> libRDKitTrajectory.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitga.so -> libRDKitga.so.1 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKithc.so -> libRDKithc.so.1 drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/librdkit-dev/ -rw-r--r-- root/root 4808 2025-10-21 10:00 ./usr/share/doc/librdkit-dev/changelog.Debian.gz -rw-r--r-- root/root 132390 2025-08-29 13:10 ./usr/share/doc/librdkit-dev/changelog.gz -rw-r--r-- root/root 64692 2025-10-21 09:54 ./usr/share/doc/librdkit-dev/copyright librdkit1t64-dbgsym_202503.6-3_ppc64el.deb ------------------------------------------ new Debian package, version 2.0. size 127028316 bytes: control archive=3480 bytes. 2959 bytes, 12 lines control 6878 bytes, 65 lines md5sums Package: librdkit1t64-dbgsym Source: rdkit Version: 202503.6-3 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debichem Team Installed-Size: 129738 Depends: librdkit1t64 (= 202503.6-3) Section: debug Priority: optional Description: debug symbols for librdkit1t64 Build-Ids: 002ff9c019448c87fa4a05054e8c645193201c41 01d4c4c6fed59d714c3a503404d404b2d729a5f5 03565d933e3be8af56a949a1ae7f0f3fa4e53c66 0a0b25f9a01db5f95b573d2d58a4396885a39ba0 0a4e077563be14a621ee0f0ff74e9e0884a7f0ba 1134192df2e5e012a7adefac33d985c17bcb4c1f 1150287d633072b710a9bfa8029f6a8689baab9b 1461ef13bc5802b08fffe0a9853002d2d1294b38 191013fe0cc6ff790a0ac8f16aa11f65438c3e61 1d2760e683a2a820d7fa4735ddf9af389116a887 2283d973c7793e3e00268568613394cf66b18bf3 2395b64139938a5092e4887ff8912d4583ec1c8d 2ae2ae78b0e6cea06038a9576e7fb34a886c5f98 32b107e74395dfe8511a2039b6f6e8e13902cb52 397cf69e07ef36122b0460e44019a65f93f9677b 41281c9dc2e68dd363f9031384c249e9284f02f5 41733d911137212ab8199a4e677fffcdfde05d44 42e8015ffcfe74210f1ed3db8c27179f0f71c890 456d450471274da3b8770fc330f598713f789c7b 4620c05f23ab538a2dcc4bc9119162684edb89cc 476b5b31a10034b0711d9f2dda1856f31c405500 4a4852931f2d9e4453215c56f6a590395610636a 4c3cf313682d69b6b50269dffa98fce84e822093 4cdb4ca54e21bda58016834874de60e01ed3c8bd 4d9b356fe652ce467593710b00c9c784ab99fd4c 5345716cc0349a431c69ec63b3d12c18211c34a7 5a255253fbaae09a292f6f5a2e7153278261f8b0 5b8fde3e4792af30e389855241950f332cdfb8d1 5fd44f8c1b7029fa0d56b53da67524c8d55be8af 615be7a84a05125616321de41e8613402ff34cab 63c2fd875a8a7e7e562d10cb52b35c58f2ad5495 6bd30e9eda85e06cc08c64eee651f7ff44595f6c 7459ebd00e26f02046390a9cf36bee935c2abcf1 7d7ebeb98e0ab69eed58985e04a524ba020d9a87 7e67b65f4058c944b0ec81645c1051d59a56d43a 7f668896bdcd6a8b1ee386c698aac0068194f79f 886592616a29db6b3081d81141b508e26c17f4b2 8a816f953d742289a47036fddbe345464c01c7b7 8b00e0d76c1c724dff5553ef8088d593d24e58b5 8dbf4b8471ab4ec15db33bb2d400669f48e0e408 902a477d5773443c48f5af4cec48d0538c4fa8cc 91e1265bdad57eb2d3c14aff21191e74ddca7ff7 9876932ef75066b3c9b8acf77b59b80bc045c4cb a5769117f41a5db26e086131ae4930b4a4076e38 abf4d67720a7675be8d5fc014733e185873b1ed3 ac5ca8bc35ebbda7c9e37e17eda5d30a4e3335b2 add6e99645a913c07df4797038e1414b83ac06c0 b298bc9d1ee48d7688db5cbd583ff2db843a90aa b462f612e437697b1b2c900057cfa8817036e212 b59e9e2e8472ad5629f817bc63bce666b0ce9eb6 b7098a54b37435bfafee8eedfa0f0ff88be148f6 b8f2878699bdf5f2d3d204b3150b838c8fb690b0 ba90744d2646c1e90704478e42de830af5f8a8df bc2259a8337e71b85f304891be133a995f0204c3 c62e2c89f0f29b1b87dff25c22cd1872f7dcc53b c70c63394d0bed8376c445990037795e35dcdeb6 da81c2907cb06e36a28e6ceb5ae41d5ebeeed405 db45d8965fd2384433163deea65ae781c64d7dc1 e59b9d61934c65a5f8ee7814e1a6111773ae1cfe e9342724897c5dfa855819e547b34dcf37057839 ebd8d9c6d5a6a59385967e1f9896d010edeb9de5 ec569bed426492771499faf1cfa9fe177d4bc888 f0fe4c21c358ba55482e305ea1c496bc983a07a9 fa903d0b9206821aef90e774026dd8e4cb287a3a drwxr-xr-x root/root 0 2025-10-21 10:00 ./ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/00/ -rw-r--r-- root/root 2342472 2025-10-21 10:00 ./usr/lib/debug/.build-id/00/2ff9c019448c87fa4a05054e8c645193201c41.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/01/ -rw-r--r-- root/root 585640 2025-10-21 10:00 ./usr/lib/debug/.build-id/01/d4c4c6fed59d714c3a503404d404b2d729a5f5.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/03/ -rw-r--r-- root/root 2285712 2025-10-21 10:00 ./usr/lib/debug/.build-id/03/565d933e3be8af56a949a1ae7f0f3fa4e53c66.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/0a/ -rw-r--r-- root/root 109992 2025-10-21 10:00 ./usr/lib/debug/.build-id/0a/0b25f9a01db5f95b573d2d58a4396885a39ba0.debug -rw-r--r-- root/root 76424 2025-10-21 10:00 ./usr/lib/debug/.build-id/0a/4e077563be14a621ee0f0ff74e9e0884a7f0ba.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/11/ -rw-r--r-- root/root 166056 2025-10-21 10:00 ./usr/lib/debug/.build-id/11/34192df2e5e012a7adefac33d985c17bcb4c1f.debug -rw-r--r-- root/root 160640 2025-10-21 10:00 ./usr/lib/debug/.build-id/11/50287d633072b710a9bfa8029f6a8689baab9b.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/14/ -rw-r--r-- root/root 7314952 2025-10-21 10:00 ./usr/lib/debug/.build-id/14/61ef13bc5802b08fffe0a9853002d2d1294b38.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/19/ -rw-r--r-- root/root 486744 2025-10-21 10:00 ./usr/lib/debug/.build-id/19/1013fe0cc6ff790a0ac8f16aa11f65438c3e61.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/1d/ -rw-r--r-- root/root 637408 2025-10-21 10:00 ./usr/lib/debug/.build-id/1d/2760e683a2a820d7fa4735ddf9af389116a887.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/22/ -rw-r--r-- root/root 2077176 2025-10-21 10:00 ./usr/lib/debug/.build-id/22/83d973c7793e3e00268568613394cf66b18bf3.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/23/ -rw-r--r-- root/root 12898400 2025-10-21 10:00 ./usr/lib/debug/.build-id/23/95b64139938a5092e4887ff8912d4583ec1c8d.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/2a/ -rw-r--r-- root/root 617776 2025-10-21 10:00 ./usr/lib/debug/.build-id/2a/e2ae78b0e6cea06038a9576e7fb34a886c5f98.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/32/ -rw-r--r-- root/root 5786736 2025-10-21 10:00 ./usr/lib/debug/.build-id/32/b107e74395dfe8511a2039b6f6e8e13902cb52.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/39/ -rw-r--r-- root/root 2107560 2025-10-21 10:00 ./usr/lib/debug/.build-id/39/7cf69e07ef36122b0460e44019a65f93f9677b.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/41/ -rw-r--r-- root/root 3129248 2025-10-21 10:00 ./usr/lib/debug/.build-id/41/281c9dc2e68dd363f9031384c249e9284f02f5.debug -rw-r--r-- root/root 230920 2025-10-21 10:00 ./usr/lib/debug/.build-id/41/733d911137212ab8199a4e677fffcdfde05d44.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/42/ -rw-r--r-- root/root 2620848 2025-10-21 10:00 ./usr/lib/debug/.build-id/42/e8015ffcfe74210f1ed3db8c27179f0f71c890.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/45/ -rw-r--r-- root/root 12600 2025-10-21 10:00 ./usr/lib/debug/.build-id/45/6d450471274da3b8770fc330f598713f789c7b.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/46/ -rw-r--r-- root/root 1948096 2025-10-21 10:00 ./usr/lib/debug/.build-id/46/20c05f23ab538a2dcc4bc9119162684edb89cc.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/47/ -rw-r--r-- root/root 18472 2025-10-21 10:00 ./usr/lib/debug/.build-id/47/6b5b31a10034b0711d9f2dda1856f31c405500.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/4a/ -rw-r--r-- root/root 597608 2025-10-21 10:00 ./usr/lib/debug/.build-id/4a/4852931f2d9e4453215c56f6a590395610636a.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/4c/ -rw-r--r-- root/root 62008 2025-10-21 10:00 ./usr/lib/debug/.build-id/4c/3cf313682d69b6b50269dffa98fce84e822093.debug -rw-r--r-- root/root 9352 2025-10-21 10:00 ./usr/lib/debug/.build-id/4c/db4ca54e21bda58016834874de60e01ed3c8bd.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/4d/ -rw-r--r-- root/root 216752 2025-10-21 10:00 ./usr/lib/debug/.build-id/4d/9b356fe652ce467593710b00c9c784ab99fd4c.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/53/ -rw-r--r-- root/root 599456 2025-10-21 10:00 ./usr/lib/debug/.build-id/53/45716cc0349a431c69ec63b3d12c18211c34a7.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/5a/ -rw-r--r-- root/root 136064 2025-10-21 10:00 ./usr/lib/debug/.build-id/5a/255253fbaae09a292f6f5a2e7153278261f8b0.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/5b/ -rw-r--r-- root/root 2002920 2025-10-21 10:00 ./usr/lib/debug/.build-id/5b/8fde3e4792af30e389855241950f332cdfb8d1.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/5f/ -rw-r--r-- root/root 1511640 2025-10-21 10:00 ./usr/lib/debug/.build-id/5f/d44f8c1b7029fa0d56b53da67524c8d55be8af.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/61/ -rw-r--r-- root/root 54128 2025-10-21 10:00 ./usr/lib/debug/.build-id/61/5be7a84a05125616321de41e8613402ff34cab.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/63/ -rw-r--r-- root/root 433848 2025-10-21 10:00 ./usr/lib/debug/.build-id/63/c2fd875a8a7e7e562d10cb52b35c58f2ad5495.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/6b/ -rw-r--r-- root/root 2003776 2025-10-21 10:00 ./usr/lib/debug/.build-id/6b/d30e9eda85e06cc08c64eee651f7ff44595f6c.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/74/ -rw-r--r-- root/root 44480 2025-10-21 10:00 ./usr/lib/debug/.build-id/74/59ebd00e26f02046390a9cf36bee935c2abcf1.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/7d/ -rw-r--r-- root/root 364896 2025-10-21 10:00 ./usr/lib/debug/.build-id/7d/7ebeb98e0ab69eed58985e04a524ba020d9a87.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/7e/ -rw-r--r-- root/root 593136 2025-10-21 10:00 ./usr/lib/debug/.build-id/7e/67b65f4058c944b0ec81645c1051d59a56d43a.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/7f/ -rw-r--r-- root/root 1801984 2025-10-21 10:00 ./usr/lib/debug/.build-id/7f/668896bdcd6a8b1ee386c698aac0068194f79f.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/88/ -rw-r--r-- root/root 406800 2025-10-21 10:00 ./usr/lib/debug/.build-id/88/6592616a29db6b3081d81141b508e26c17f4b2.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 244120 2025-10-21 10:00 ./usr/lib/debug/.build-id/8a/816f953d742289a47036fddbe345464c01c7b7.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/8b/ -rw-r--r-- root/root 449136 2025-10-21 10:00 ./usr/lib/debug/.build-id/8b/00e0d76c1c724dff5553ef8088d593d24e58b5.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/8d/ -rw-r--r-- root/root 3983240 2025-10-21 10:00 ./usr/lib/debug/.build-id/8d/bf4b8471ab4ec15db33bb2d400669f48e0e408.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/90/ -rw-r--r-- root/root 2175072 2025-10-21 10:00 ./usr/lib/debug/.build-id/90/2a477d5773443c48f5af4cec48d0538c4fa8cc.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/91/ -rw-r--r-- root/root 1643264 2025-10-21 10:00 ./usr/lib/debug/.build-id/91/e1265bdad57eb2d3c14aff21191e74ddca7ff7.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/98/ -rw-r--r-- root/root 1416008 2025-10-21 10:00 ./usr/lib/debug/.build-id/98/76932ef75066b3c9b8acf77b59b80bc045c4cb.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/a5/ -rw-r--r-- root/root 641352 2025-10-21 10:00 ./usr/lib/debug/.build-id/a5/769117f41a5db26e086131ae4930b4a4076e38.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/ab/ -rw-r--r-- root/root 3212320 2025-10-21 10:00 ./usr/lib/debug/.build-id/ab/f4d67720a7675be8d5fc014733e185873b1ed3.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/ac/ -rw-r--r-- root/root 1078368 2025-10-21 10:00 ./usr/lib/debug/.build-id/ac/5ca8bc35ebbda7c9e37e17eda5d30a4e3335b2.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/ad/ -rw-r--r-- root/root 15637328 2025-10-21 10:00 ./usr/lib/debug/.build-id/ad/d6e99645a913c07df4797038e1414b83ac06c0.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/b2/ -rw-r--r-- root/root 5494584 2025-10-21 10:00 ./usr/lib/debug/.build-id/b2/98bc9d1ee48d7688db5cbd583ff2db843a90aa.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/b4/ -rw-r--r-- root/root 603872 2025-10-21 10:00 ./usr/lib/debug/.build-id/b4/62f612e437697b1b2c900057cfa8817036e212.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/b5/ -rw-r--r-- root/root 6624088 2025-10-21 10:00 ./usr/lib/debug/.build-id/b5/9e9e2e8472ad5629f817bc63bce666b0ce9eb6.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/b7/ -rw-r--r-- root/root 1144392 2025-10-21 10:00 ./usr/lib/debug/.build-id/b7/098a54b37435bfafee8eedfa0f0ff88be148f6.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/b8/ -rw-r--r-- root/root 584576 2025-10-21 10:00 ./usr/lib/debug/.build-id/b8/f2878699bdf5f2d3d204b3150b838c8fb690b0.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/ba/ -rw-r--r-- root/root 629544 2025-10-21 10:00 ./usr/lib/debug/.build-id/ba/90744d2646c1e90704478e42de830af5f8a8df.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/bc/ -rw-r--r-- root/root 320928 2025-10-21 10:00 ./usr/lib/debug/.build-id/bc/2259a8337e71b85f304891be133a995f0204c3.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/c6/ -rw-r--r-- root/root 10502984 2025-10-21 10:00 ./usr/lib/debug/.build-id/c6/2e2c89f0f29b1b87dff25c22cd1872f7dcc53b.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/c7/ -rw-r--r-- root/root 352528 2025-10-21 10:00 ./usr/lib/debug/.build-id/c7/0c63394d0bed8376c445990037795e35dcdeb6.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/da/ -rw-r--r-- root/root 755592 2025-10-21 10:00 ./usr/lib/debug/.build-id/da/81c2907cb06e36a28e6ceb5ae41d5ebeeed405.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/db/ -rw-r--r-- root/root 528776 2025-10-21 10:00 ./usr/lib/debug/.build-id/db/45d8965fd2384433163deea65ae781c64d7dc1.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/e5/ -rw-r--r-- root/root 1567976 2025-10-21 10:00 ./usr/lib/debug/.build-id/e5/9b9d61934c65a5f8ee7814e1a6111773ae1cfe.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/e9/ -rw-r--r-- root/root 5460200 2025-10-21 10:00 ./usr/lib/debug/.build-id/e9/342724897c5dfa855819e547b34dcf37057839.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/eb/ -rw-r--r-- root/root 851936 2025-10-21 10:00 ./usr/lib/debug/.build-id/eb/d8d9c6d5a6a59385967e1f9896d010edeb9de5.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/ec/ -rw-r--r-- root/root 585976 2025-10-21 10:00 ./usr/lib/debug/.build-id/ec/569bed426492771499faf1cfa9fe177d4bc888.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/f0/ -rw-r--r-- root/root 6667312 2025-10-21 10:00 ./usr/lib/debug/.build-id/f0/fe4c21c358ba55482e305ea1c496bc983a07a9.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/fa/ -rw-r--r-- root/root 545192 2025-10-21 10:00 ./usr/lib/debug/.build-id/fa/903d0b9206821aef90e774026dd8e4cb287a3a.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/ -rw-r--r-- root/root 2592544 2025-10-21 10:00 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/librdkit1t64.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/share/doc/librdkit1t64-dbgsym -> librdkit1t64 librdkit1t64_202503.6-3_ppc64el.deb ----------------------------------- new Debian package, version 2.0. size 6075044 bytes: control archive=3556 bytes. 1923 bytes, 40 lines control 5271 bytes, 68 lines md5sums 3178 bytes, 64 lines shlibs 66 bytes, 2 lines triggers Package: librdkit1t64 Source: rdkit Version: 202503.6-3 Architecture: ppc64el Maintainer: Debichem Team Installed-Size: 30193 Depends: libboost-iostreams1.83.0 (>= 1.83.0), libboost-python1.83.0 (>= 1.83.0), libboost-python1.83.0-py313, libboost-serialization1.83.0 (>= 1.83.0), libc6 (>= 2.38), libcairo2 (>= 1.4.10), libcoordgen3 (>= 3.0.2), libfreetype6 (>= 2.2.1), libgcc-s1 (>= 3.3), libinchi1.07 (>= 1.07.3+dfsg), libmaeparser1 (>= 1.3.3), libstdc++6 (>= 14) Breaks: coot (<< 1.1.15+dfsg-1), librdkit1 (<< 202503.6-3) Replaces: librdkit1 Provides: librdkit1 (= 202503.6-3) Section: libs Priority: optional Homepage: http://www.rdkit.org Description: Collection of cheminformatics and machine-learning software (shared libraries) RDKit is a Python/C++ based cheminformatics and machine-learning software environment. Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan algorithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. . This package contains the shared libraries. drwxr-xr-x root/root 0 2025-10-21 10:00 ./ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/ lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitAbbreviations.so.1 -> libRDKitAbbreviations.so.1.2025.03.6 -rw-r--r-- root/root 198896 2025-10-21 10:00 ./usr/lib/libRDKitAbbreviations.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitAlignment.so.1 -> libRDKitAlignment.so.1.2025.03.6 -rw-r--r-- root/root 67784 2025-10-21 10:00 ./usr/lib/libRDKitAlignment.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitCIPLabeler.so.1 -> libRDKitCIPLabeler.so.1.2025.03.6 -rw-r--r-- root/root 265144 2025-10-21 10:00 ./usr/lib/libRDKitCIPLabeler.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitCatalogs.so.1 -> libRDKitCatalogs.so.1.2025.03.6 -rw-r--r-- root/root 67448 2025-10-21 10:00 ./usr/lib/libRDKitCatalogs.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitChemReactions.so.1 -> libRDKitChemReactions.so.1.2025.03.6 -rw-r--r-- root/root 1378960 2025-10-21 10:00 ./usr/lib/libRDKitChemReactions.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitChemTransforms.so.1 -> libRDKitChemTransforms.so.1.2025.03.6 -rw-r--r-- root/root 526672 2025-10-21 10:00 ./usr/lib/libRDKitChemTransforms.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitChemicalFeatures.so.1 -> libRDKitChemicalFeatures.so.1.2025.03.6 -rw-r--r-- root/root 67608 2025-10-21 10:00 ./usr/lib/libRDKitChemicalFeatures.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDataStructs.so.1 -> libRDKitDataStructs.so.1.2025.03.6 -rw-r--r-- root/root 395512 2025-10-21 10:00 ./usr/lib/libRDKitDataStructs.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDepictor.so.1 -> libRDKitDepictor.so.1.2025.03.6 -rw-r--r-- root/root 526608 2025-10-21 10:00 ./usr/lib/libRDKitDepictor.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDeprotect.so.1 -> libRDKitDeprotect.so.1.2025.03.6 -rw-r--r-- root/root 133232 2025-10-21 10:00 ./usr/lib/libRDKitDeprotect.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDescriptors.so.1 -> libRDKitDescriptors.so.1.2025.03.6 -rw-r--r-- root/root 1063624 2025-10-21 10:00 ./usr/lib/libRDKitDescriptors.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDetermineBonds.so.1 -> libRDKitDetermineBonds.so.1.2025.03.6 -rw-r--r-- root/root 198856 2025-10-21 10:00 ./usr/lib/libRDKitDetermineBonds.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDistGeomHelpers.so.1 -> libRDKitDistGeomHelpers.so.1.2025.03.6 -rw-r--r-- root/root 526552 2025-10-21 10:00 ./usr/lib/libRDKitDistGeomHelpers.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitDistGeometry.so.1 -> libRDKitDistGeometry.so.1.2025.03.6 -rw-r--r-- root/root 198856 2025-10-21 10:00 ./usr/lib/libRDKitDistGeometry.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitEigenSolvers.so.1 -> libRDKitEigenSolvers.so.1.2025.03.6 -rw-r--r-- root/root 67784 2025-10-21 10:00 ./usr/lib/libRDKitEigenSolvers.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitEnumerateStereoisomers.so.1 -> libRDKitEnumerateStereoisomers.so.1.2025.03.6 -rw-r--r-- root/root 133328 2025-10-21 10:00 ./usr/lib/libRDKitEnumerateStereoisomers.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitFMCS.so.1 -> libRDKitFMCS.so.1.2025.03.6 -rw-r--r-- root/root 461000 2025-10-21 10:00 ./usr/lib/libRDKitFMCS.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitFileParsers.so.1 -> libRDKitFileParsers.so.1.2025.03.6 -rw-r--r-- root/root 2823624 2025-10-21 10:00 ./usr/lib/libRDKitFileParsers.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitFilterCatalog.so.1 -> libRDKitFilterCatalog.so.1.2025.03.6 -rw-r--r-- root/root 1247504 2025-10-21 10:00 ./usr/lib/libRDKitFilterCatalog.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitFingerprints.so.1 -> libRDKitFingerprints.so.1.2025.03.6 -rw-r--r-- root/root 789744 2025-10-21 10:00 ./usr/lib/libRDKitFingerprints.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitForceField.so.1 -> libRDKitForceField.so.1.2025.03.6 -rw-r--r-- root/root 854224 2025-10-21 10:00 ./usr/lib/libRDKitForceField.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitForceFieldHelpers.so.1 -> libRDKitForceFieldHelpers.so.1.2025.03.6 -rw-r--r-- root/root 592096 2025-10-21 10:00 ./usr/lib/libRDKitForceFieldHelpers.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitFragCatalog.so.1 -> libRDKitFragCatalog.so.1.2025.03.6 -rw-r--r-- root/root 329936 2025-10-21 10:00 ./usr/lib/libRDKitFragCatalog.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitGeneralizedSubstruct.so.1 -> libRDKitGeneralizedSubstruct.so.1.2025.03.6 -rw-r--r-- root/root 330152 2025-10-21 10:00 ./usr/lib/libRDKitGeneralizedSubstruct.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitGenericGroups.so.1 -> libRDKitGenericGroups.so.1.2025.03.6 -rw-r--r-- root/root 198872 2025-10-21 10:00 ./usr/lib/libRDKitGenericGroups.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitGraphMol.so.1 -> libRDKitGraphMol.so.1.2025.03.6 -rw-r--r-- root/root 2820368 2025-10-21 10:00 ./usr/lib/libRDKitGraphMol.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitInfoTheory.so.1 -> libRDKitInfoTheory.so.1.2025.03.6 -rw-r--r-- root/root 67784 2025-10-21 10:00 ./usr/lib/libRDKitInfoTheory.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMMPA.so.1 -> libRDKitMMPA.so.1.2025.03.6 -rw-r--r-- root/root 133232 2025-10-21 10:00 ./usr/lib/libRDKitMMPA.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMarvinParser.so.1 -> libRDKitMarvinParser.so.1.2025.03.6 -rw-r--r-- root/root 854600 2025-10-21 10:00 ./usr/lib/libRDKitMarvinParser.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolAlign.so.1 -> libRDKitMolAlign.so.1.2025.03.6 -rw-r--r-- root/root 198888 2025-10-21 10:00 ./usr/lib/libRDKitMolAlign.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolCatalog.so.1 -> libRDKitMolCatalog.so.1.2025.03.6 -rw-r--r-- root/root 67688 2025-10-21 10:00 ./usr/lib/libRDKitMolCatalog.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolChemicalFeatures.so.1 -> libRDKitMolChemicalFeatures.so.1.2025.03.6 -rw-r--r-- root/root 198928 2025-10-21 10:00 ./usr/lib/libRDKitMolChemicalFeatures.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolDraw2D.so.1 -> libRDKitMolDraw2D.so.1.2025.03.6 -rw-r--r-- root/root 1444232 2025-10-21 10:00 ./usr/lib/libRDKitMolDraw2D.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolEnumerator.so.1 -> libRDKitMolEnumerator.so.1.2025.03.6 -rw-r--r-- root/root 461208 2025-10-21 10:00 ./usr/lib/libRDKitMolEnumerator.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolHash.so.1 -> libRDKitMolHash.so.1.2025.03.6 -rw-r--r-- root/root 133480 2025-10-21 10:00 ./usr/lib/libRDKitMolHash.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolInteractionFields.so.1 -> libRDKitMolInteractionFields.so.1.2025.03.6 -rw-r--r-- root/root 198872 2025-10-21 10:00 ./usr/lib/libRDKitMolInteractionFields.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolInterchange.so.1 -> libRDKitMolInterchange.so.1.2025.03.6 -rw-r--r-- root/root 592096 2025-10-21 10:00 ./usr/lib/libRDKitMolInterchange.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolProcessing.so.1 -> libRDKitMolProcessing.so.1.2025.03.6 -rw-r--r-- root/root 67792 2025-10-21 10:00 ./usr/lib/libRDKitMolProcessing.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolStandardize.so.1 -> libRDKitMolStandardize.so.1.2025.03.6 -rw-r--r-- root/root 1379640 2025-10-21 10:00 ./usr/lib/libRDKitMolStandardize.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitMolTransforms.so.1 -> libRDKitMolTransforms.so.1.2025.03.6 -rw-r--r-- root/root 198856 2025-10-21 10:00 ./usr/lib/libRDKitMolTransforms.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitO3AAlign.so.1 -> libRDKitO3AAlign.so.1.2025.03.6 -rw-r--r-- root/root 264408 2025-10-21 10:00 ./usr/lib/libRDKitO3AAlign.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitOptimizer.so.1 -> libRDKitOptimizer.so.1.2025.03.6 -rw-r--r-- root/root 67368 2025-10-21 10:00 ./usr/lib/libRDKitOptimizer.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitPartialCharges.so.1 -> libRDKitPartialCharges.so.1.2025.03.6 -rw-r--r-- root/root 133320 2025-10-21 10:00 ./usr/lib/libRDKitPartialCharges.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRDBoost.so.1 -> libRDKitRDBoost.so.1.2025.03.6 -rw-r--r-- root/root 67784 2025-10-21 10:00 ./usr/lib/libRDKitRDBoost.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRDGeneral.so.1 -> libRDKitRDGeneral.so.1.2025.03.6 -rw-r--r-- root/root 205544 2025-10-21 10:00 ./usr/lib/libRDKitRDGeneral.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRDGeometryLib.so.1 -> libRDKitRDGeometryLib.so.1.2025.03.6 -rw-r--r-- root/root 198864 2025-10-21 10:00 ./usr/lib/libRDKitRDGeometryLib.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRDInchiLib.so.1 -> libRDKitRDInchiLib.so.1.2025.03.6 -rw-r--r-- root/root 133328 2025-10-21 10:00 ./usr/lib/libRDKitRDInchiLib.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRDStreams.so.1 -> libRDKitRDStreams.so.1.2025.03.6 -rw-r--r-- root/root 133232 2025-10-21 10:00 ./usr/lib/libRDKitRDStreams.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRGroupDecomposition.so.1 -> libRDKitRGroupDecomposition.so.1.2025.03.6 -rw-r--r-- root/root 1184184 2025-10-21 10:00 ./usr/lib/libRDKitRGroupDecomposition.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitRascalMCES.so.1 -> libRDKitRascalMCES.so.1.2025.03.6 -rw-r--r-- root/root 658656 2025-10-21 10:00 ./usr/lib/libRDKitRascalMCES.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitReducedGraphs.so.1 -> libRDKitReducedGraphs.so.1.2025.03.6 -rw-r--r-- root/root 133360 2025-10-21 10:00 ./usr/lib/libRDKitReducedGraphs.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSLNParse.so.1 -> libRDKitSLNParse.so.1.2025.03.6 -rw-r--r-- root/root 527592 2025-10-21 10:00 ./usr/lib/libRDKitSLNParse.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitScaffoldNetwork.so.1 -> libRDKitScaffoldNetwork.so.1.2025.03.6 -rw-r--r-- root/root 264400 2025-10-21 10:00 ./usr/lib/libRDKitScaffoldNetwork.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitShapeHelpers.so.1 -> libRDKitShapeHelpers.so.1.2025.03.6 -rw-r--r-- root/root 67784 2025-10-21 10:00 ./usr/lib/libRDKitShapeHelpers.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSimDivPickers.so.1 -> libRDKitSimDivPickers.so.1.2025.03.6 -rw-r--r-- root/root 67784 2025-10-21 10:00 ./usr/lib/libRDKitSimDivPickers.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSmilesParse.so.1 -> libRDKitSmilesParse.so.1.2025.03.6 -rw-r--r-- root/root 1117064 2025-10-21 10:00 ./usr/lib/libRDKitSmilesParse.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSubgraphs.so.1 -> libRDKitSubgraphs.so.1.2025.03.6 -rw-r--r-- root/root 133320 2025-10-21 10:00 ./usr/lib/libRDKitSubgraphs.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSubstructLibrary.so.1 -> libRDKitSubstructLibrary.so.1.2025.03.6 -rw-r--r-- root/root 1051080 2025-10-21 10:00 ./usr/lib/libRDKitSubstructLibrary.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSubstructMatch.so.1 -> libRDKitSubstructMatch.so.1.2025.03.6 -rw-r--r-- root/root 461168 2025-10-21 10:00 ./usr/lib/libRDKitSubstructMatch.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitSynthonSpaceSearch.so.1 -> libRDKitSynthonSpaceSearch.so.1.2025.03.6 -rw-r--r-- root/root 922816 2025-10-21 10:00 ./usr/lib/libRDKitSynthonSpaceSearch.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitTautomerQuery.so.1 -> libRDKitTautomerQuery.so.1.2025.03.6 -rw-r--r-- root/root 264424 2025-10-21 10:00 ./usr/lib/libRDKitTautomerQuery.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitTrajectory.so.1 -> libRDKitTrajectory.so.1.2025.03.6 -rw-r--r-- root/root 133376 2025-10-21 10:00 ./usr/lib/libRDKitTrajectory.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKitga.so.1 -> libRDKitga.so.1.2025.03.6 -rw-r--r-- root/root 67784 2025-10-21 10:00 ./usr/lib/libRDKitga.so.1.2025.03.6 lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/libRDKithc.so.1 -> libRDKithc.so.1.2025.03.6 -rw-r--r-- root/root 67520 2025-10-21 10:00 ./usr/lib/libRDKithc.so.1.2025.03.6 drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/librdkit1t64/ -rw-r--r-- root/root 4809 2025-10-21 10:00 ./usr/share/doc/librdkit1t64/changelog.Debian.gz -rw-r--r-- root/root 132390 2025-08-29 13:10 ./usr/share/doc/librdkit1t64/changelog.gz -rw-r--r-- root/root 64692 2025-10-21 09:54 ./usr/share/doc/librdkit1t64/copyright drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/lintian/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 495 2025-10-21 09:54 ./usr/share/lintian/overrides/librdkit1t64 postgresql-18-rdkit-dbgsym_202503.6-3_ppc64el.deb ------------------------------------------------- new Debian package, version 2.0. size 1184912 bytes: control archive=544 bytes. 395 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: postgresql-18-rdkit-dbgsym Source: rdkit Version: 202503.6-3 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debichem Team Installed-Size: 1261 Depends: postgresql-18-rdkit (= 202503.6-3) Section: debug Priority: optional Description: debug symbols for postgresql-18-rdkit Build-Ids: 9b74ae82ec2c7fd092d8588285c6de9247be77c0 drwxr-xr-x root/root 0 2025-10-21 10:00 ./ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/9b/ -rw-r--r-- root/root 1280888 2025-10-21 10:00 ./usr/lib/debug/.build-id/9b/74ae82ec2c7fd092d8588285c6de9247be77c0.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/share/doc/postgresql-18-rdkit-dbgsym -> postgresql-18-rdkit postgresql-18-rdkit_202503.6-3_ppc64el.deb ------------------------------------------ new Debian package, version 2.0. size 262444 bytes: control archive=1588 bytes. 1583 bytes, 37 lines control 1481 bytes, 17 lines md5sums Package: postgresql-18-rdkit Source: rdkit Version: 202503.6-3 Architecture: ppc64el Maintainer: Debichem Team Installed-Size: 733 Depends: libc6 (>= 2.17), libgcc-s1 (>= 3.0), librdkit1t64 (>= 202503.6), libstdc++6 (>= 13.1), postgresql-18 Section: database Priority: optional Homepage: http://www.rdkit.org Description: Cheminformatics and machine-learning software (PostgreSQL Cartridge) RDKit is a Python/C++ based cheminformatics and machine-learning software environment. Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan algorithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. . This package contains the PostgreSQL extension. drwxr-xr-x root/root 0 2025-10-21 10:00 ./ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/postgresql/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/postgresql/18/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/postgresql/18/lib/ -rw-r--r-- root/root 462152 2025-10-21 10:00 ./usr/lib/postgresql/18/lib/rdkit.so drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/postgresql-18-rdkit/ -rw-r--r-- root/root 4811 2025-10-21 10:00 ./usr/share/doc/postgresql-18-rdkit/changelog.Debian.gz -rw-r--r-- root/root 132390 2025-08-29 13:10 ./usr/share/doc/postgresql-18-rdkit/changelog.gz -rw-r--r-- root/root 64692 2025-10-21 09:54 ./usr/share/doc/postgresql-18-rdkit/copyright drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/postgresql/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/postgresql/18/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/postgresql/18/extension/ -rw-r--r-- root/root 4542 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--3.8--4.0.sql -rw-r--r-- root/root 0 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.0--4.0.1.sql -rw-r--r-- root/root 40 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.0.1--4.1.sql -rw-r--r-- root/root 0 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.1--4.1.1.sql -rw-r--r-- root/root 326 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.1.1--4.2.sql -rw-r--r-- root/root 1266 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.2--4.3.0.sql -rw-r--r-- root/root 4934 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.3.0--4.4.0.sql -rw-r--r-- root/root 403 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.4.0--4.5.0.sql -rw-r--r-- root/root 544 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.5.0--4.6.0.sql -rw-r--r-- root/root 454 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.6.0--4.6.1.sql -rw-r--r-- root/root 527 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.6.1--4.7.0.sql -rw-r--r-- root/root 51167 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit--4.7.0.sql -rw-r--r-- root/root 137 2025-10-21 10:00 ./usr/share/postgresql/18/extension/rdkit.control python3-rdkit-dbgsym_202503.6-3_ppc64el.deb ------------------------------------------- new Debian package, version 2.0. size 63520952 bytes: control archive=3172 bytes. 2674 bytes, 12 lines control 6137 bytes, 58 lines md5sums Package: python3-rdkit-dbgsym Source: rdkit Version: 202503.6-3 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debichem Team Installed-Size: 72533 Depends: python3-rdkit (= 202503.6-3) Section: debug Priority: optional Description: debug symbols for python3-rdkit Build-Ids: 00465a616689b2b599bfc8c3162f088b17c7606c 025204bf2f4539a288576fdb396b903ae82d3fee 062608ddbe85331f81fe5647c0138b0d5034688c 07d1faf6cb7cd0e9bec09071cb71b4840191ca1f 0d6ab45bb21aa541c4c598b1ec30ee2252cf90c9 1244c366cd7c8a42dddfc04adab2b95df5c92a5a 1c1b6656ba11a5b6d80000af312cfbe33e48286d 1e0d68ddeabccc93e5509c3a713d47eea9c276ba 21f3b78b0d82ea54acbfd17362fb384abe8ba4e2 2275a8ea2c341568087c8ffe5e62da4527940c37 28f00df74ddef854240db2a8bd17687d30990b5c 2cfb914a10efd5904cfe957df2a468bd22add3d9 31e27078be0e2a3a7863295df6594c38eafab1a8 34f39385ec2b5ffe9d3946f8ebf23a3fa2abd886 382e380930ebb0d1ecef0e295a59ef6289ea59ac 38544ee299637adb43b731bbf754b4bb8681c876 39ee59b74cfa9040e69615bb3b98de19a779f284 3a5c6ffed7997cc25a0d11bbda175e328e1be95f 3f6a29edb7c6b5c1565cd628cab978bb70adc3e0 42899df9d6c4a573f6143010e34036280928a393 4447a0ee4a1dc569bb85921e900dbed77449bb82 46047c057de6f359a0cce073c426c2e4082104bf 5bc4f3834473a59d153d61d3c52a97f9d06050e2 5c52ec857e97e7281a93c31f359adbcd998113d7 5dd6cea19006e08e51bd93cc3f52d93b48e09c52 5f872e3c29bc24714aa7366596bdd412fd2a59b7 5fdf8c5500933e21966f01e53cdc8bd696089f35 6dcb58c8ea14a70c2a2057a2df9409e85d91685d 6e35471e95b7b3230050619f27038ec1a734b4ad 709ff9f55a0b415560c9a2d25bd42a0342998bab 78063b80feba9bfc21b612609b4202718c806e43 78a1ce6ecd961ac1e78dd8c6b26ce30b7fee9ede 7ab371a687fa96b501bad542c9c4921d4ae670bf 7f73f8fa8f91e02b38f80d5d324a0a02aa0d882d 87389133baad6ef974eef0e4200b6d58c0f563c7 8f69bfc21fdd134932d74c1aba0124afa11f76c5 9299ad8864ee145228e82a0775a3e2613d9d8b81 992e63ad4513bb3e288f276302b8075d0ccea9e0 9ad798a4bbc86183ac815f6eb04978aa7623185d 9b4414ae482551eca17c50796c88c5f17438a73d a8b1c24ee20d349981c1cc906db27568ffae9ffd aeb861ed0ba91ccef5e96ce4584e1a028bbed524 b469fdbf8cc1f8525c4268bd5d75867694a0a1e1 b4d6f35dcc7263e369e4c026c625dcdce003250d b5125ee6bf1d34b87c92b5d48d701c494ed153a5 b7e56423b0c72eb4633665ae050a1f9abf403c4b b832052acf723c4e294e8e7671e4926e93e8d648 bd421c2a7f92d55ae4478414007b70df4a60f88e bfc0fa2cc93927a0d33d3cbfc3ae33f028d9c326 c2edcd76567d7cd8dc1565413f65ae0bb88b07e8 c7f1368bf61a4bba1ff7d612cb03088cf09b6724 e49d6b802b6d2e914d65c393b33903d0d7dd7203 e49e9da559f2d93c87a0e887191da597ddeeac29 ef80341081fea2960abd9e8076627db22c235239 f6455dadb40bc04ebff5cccf45e8baae1c477963 f64c0e9948656c9ad157e9d6696f1880ecbdbec4 fe36c67d24551682b9e57bd05467602c45c7de24 drwxr-xr-x root/root 0 2025-10-21 10:00 ./ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/00/ -rw-r--r-- root/root 363232 2025-10-21 10:00 ./usr/lib/debug/.build-id/00/465a616689b2b599bfc8c3162f088b17c7606c.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/02/ -rw-r--r-- root/root 147464 2025-10-21 10:00 ./usr/lib/debug/.build-id/02/5204bf2f4539a288576fdb396b903ae82d3fee.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/06/ -rw-r--r-- root/root 853112 2025-10-21 10:00 ./usr/lib/debug/.build-id/06/2608ddbe85331f81fe5647c0138b0d5034688c.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/07/ -rw-r--r-- root/root 194704 2025-10-21 10:00 ./usr/lib/debug/.build-id/07/d1faf6cb7cd0e9bec09071cb71b4840191ca1f.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/0d/ -rw-r--r-- root/root 5227352 2025-10-21 10:00 ./usr/lib/debug/.build-id/0d/6ab45bb21aa541c4c598b1ec30ee2252cf90c9.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/12/ -rw-r--r-- root/root 194624 2025-10-21 10:00 ./usr/lib/debug/.build-id/12/44c366cd7c8a42dddfc04adab2b95df5c92a5a.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/1c/ -rw-r--r-- root/root 575688 2025-10-21 10:00 ./usr/lib/debug/.build-id/1c/1b6656ba11a5b6d80000af312cfbe33e48286d.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/1e/ -rw-r--r-- root/root 1504056 2025-10-21 10:00 ./usr/lib/debug/.build-id/1e/0d68ddeabccc93e5509c3a713d47eea9c276ba.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/21/ -rw-r--r-- root/root 541792 2025-10-21 10:00 ./usr/lib/debug/.build-id/21/f3b78b0d82ea54acbfd17362fb384abe8ba4e2.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/22/ -rw-r--r-- root/root 3909208 2025-10-21 10:00 ./usr/lib/debug/.build-id/22/75a8ea2c341568087c8ffe5e62da4527940c37.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/28/ -rw-r--r-- root/root 330600 2025-10-21 10:00 ./usr/lib/debug/.build-id/28/f00df74ddef854240db2a8bd17687d30990b5c.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/2c/ -rw-r--r-- root/root 704464 2025-10-21 10:00 ./usr/lib/debug/.build-id/2c/fb914a10efd5904cfe957df2a468bd22add3d9.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/31/ -rw-r--r-- root/root 253280 2025-10-21 10:00 ./usr/lib/debug/.build-id/31/e27078be0e2a3a7863295df6594c38eafab1a8.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/34/ -rw-r--r-- root/root 654112 2025-10-21 10:00 ./usr/lib/debug/.build-id/34/f39385ec2b5ffe9d3946f8ebf23a3fa2abd886.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/38/ -rw-r--r-- root/root 316512 2025-10-21 10:00 ./usr/lib/debug/.build-id/38/2e380930ebb0d1ecef0e295a59ef6289ea59ac.debug -rw-r--r-- root/root 560352 2025-10-21 10:00 ./usr/lib/debug/.build-id/38/544ee299637adb43b731bbf754b4bb8681c876.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/39/ -rw-r--r-- root/root 214704 2025-10-21 10:00 ./usr/lib/debug/.build-id/39/ee59b74cfa9040e69615bb3b98de19a779f284.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/3a/ -rw-r--r-- root/root 830176 2025-10-21 10:00 ./usr/lib/debug/.build-id/3a/5c6ffed7997cc25a0d11bbda175e328e1be95f.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/3f/ -rw-r--r-- root/root 420160 2025-10-21 10:00 ./usr/lib/debug/.build-id/3f/6a29edb7c6b5c1565cd628cab978bb70adc3e0.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/42/ -rw-r--r-- root/root 604920 2025-10-21 10:00 ./usr/lib/debug/.build-id/42/899df9d6c4a573f6143010e34036280928a393.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/44/ -rw-r--r-- root/root 730136 2025-10-21 10:00 ./usr/lib/debug/.build-id/44/47a0ee4a1dc569bb85921e900dbed77449bb82.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/46/ -rw-r--r-- root/root 851256 2025-10-21 10:00 ./usr/lib/debug/.build-id/46/047c057de6f359a0cce073c426c2e4082104bf.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/5b/ -rw-r--r-- root/root 1109184 2025-10-21 10:00 ./usr/lib/debug/.build-id/5b/c4f3834473a59d153d61d3c52a97f9d06050e2.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/5c/ -rw-r--r-- root/root 4061712 2025-10-21 10:00 ./usr/lib/debug/.build-id/5c/52ec857e97e7281a93c31f359adbcd998113d7.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/5d/ -rw-r--r-- root/root 998336 2025-10-21 10:00 ./usr/lib/debug/.build-id/5d/d6cea19006e08e51bd93cc3f52d93b48e09c52.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/5f/ -rw-r--r-- root/root 730104 2025-10-21 10:00 ./usr/lib/debug/.build-id/5f/872e3c29bc24714aa7366596bdd412fd2a59b7.debug -rw-r--r-- root/root 629584 2025-10-21 10:00 ./usr/lib/debug/.build-id/5f/df8c5500933e21966f01e53cdc8bd696089f35.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/6d/ -rw-r--r-- root/root 130976 2025-10-21 10:00 ./usr/lib/debug/.build-id/6d/cb58c8ea14a70c2a2057a2df9409e85d91685d.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/6e/ -rw-r--r-- root/root 1069976 2025-10-21 10:00 ./usr/lib/debug/.build-id/6e/35471e95b7b3230050619f27038ec1a734b4ad.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/70/ -rw-r--r-- root/root 146496 2025-10-21 10:00 ./usr/lib/debug/.build-id/70/9ff9f55a0b415560c9a2d25bd42a0342998bab.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/78/ -rw-r--r-- root/root 790456 2025-10-21 10:00 ./usr/lib/debug/.build-id/78/063b80feba9bfc21b612609b4202718c806e43.debug -rw-r--r-- root/root 908848 2025-10-21 10:00 ./usr/lib/debug/.build-id/78/a1ce6ecd961ac1e78dd8c6b26ce30b7fee9ede.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/7a/ -rw-r--r-- root/root 2288552 2025-10-21 10:00 ./usr/lib/debug/.build-id/7a/b371a687fa96b501bad542c9c4921d4ae670bf.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/7f/ -rw-r--r-- root/root 197288 2025-10-21 10:00 ./usr/lib/debug/.build-id/7f/73f8fa8f91e02b38f80d5d324a0a02aa0d882d.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/87/ -rw-r--r-- root/root 552264 2025-10-21 10:00 ./usr/lib/debug/.build-id/87/389133baad6ef974eef0e4200b6d58c0f563c7.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/8f/ -rw-r--r-- root/root 6411912 2025-10-21 10:00 ./usr/lib/debug/.build-id/8f/69bfc21fdd134932d74c1aba0124afa11f76c5.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/92/ -rw-r--r-- root/root 381240 2025-10-21 10:00 ./usr/lib/debug/.build-id/92/99ad8864ee145228e82a0775a3e2613d9d8b81.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/99/ -rw-r--r-- root/root 630576 2025-10-21 10:00 ./usr/lib/debug/.build-id/99/2e63ad4513bb3e288f276302b8075d0ccea9e0.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/9a/ -rw-r--r-- root/root 1055688 2025-10-21 10:00 ./usr/lib/debug/.build-id/9a/d798a4bbc86183ac815f6eb04978aa7623185d.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/9b/ -rw-r--r-- root/root 241248 2025-10-21 10:00 ./usr/lib/debug/.build-id/9b/4414ae482551eca17c50796c88c5f17438a73d.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/a8/ -rw-r--r-- root/root 174264 2025-10-21 10:00 ./usr/lib/debug/.build-id/a8/b1c24ee20d349981c1cc906db27568ffae9ffd.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/ae/ -rw-r--r-- root/root 1070512 2025-10-21 10:00 ./usr/lib/debug/.build-id/ae/b861ed0ba91ccef5e96ce4584e1a028bbed524.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/b4/ -rw-r--r-- root/root 3462792 2025-10-21 10:00 ./usr/lib/debug/.build-id/b4/69fdbf8cc1f8525c4268bd5d75867694a0a1e1.debug -rw-r--r-- root/root 578456 2025-10-21 10:00 ./usr/lib/debug/.build-id/b4/d6f35dcc7263e369e4c026c625dcdce003250d.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/b5/ -rw-r--r-- root/root 189648 2025-10-21 10:00 ./usr/lib/debug/.build-id/b5/125ee6bf1d34b87c92b5d48d701c494ed153a5.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/b7/ -rw-r--r-- root/root 338224 2025-10-21 10:00 ./usr/lib/debug/.build-id/b7/e56423b0c72eb4633665ae050a1f9abf403c4b.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/b8/ -rw-r--r-- root/root 1534128 2025-10-21 10:00 ./usr/lib/debug/.build-id/b8/32052acf723c4e294e8e7671e4926e93e8d648.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/bd/ -rw-r--r-- root/root 247544 2025-10-21 10:00 ./usr/lib/debug/.build-id/bd/421c2a7f92d55ae4478414007b70df4a60f88e.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/bf/ -rw-r--r-- root/root 10841336 2025-10-21 10:00 ./usr/lib/debug/.build-id/bf/c0fa2cc93927a0d33d3cbfc3ae33f028d9c326.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/c2/ -rw-r--r-- root/root 770928 2025-10-21 10:00 ./usr/lib/debug/.build-id/c2/edcd76567d7cd8dc1565413f65ae0bb88b07e8.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/c7/ -rw-r--r-- root/root 3022040 2025-10-21 10:00 ./usr/lib/debug/.build-id/c7/f1368bf61a4bba1ff7d612cb03088cf09b6724.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/e4/ -rw-r--r-- root/root 1825696 2025-10-21 10:00 ./usr/lib/debug/.build-id/e4/9d6b802b6d2e914d65c393b33903d0d7dd7203.debug -rw-r--r-- root/root 390944 2025-10-21 10:00 ./usr/lib/debug/.build-id/e4/9e9da559f2d93c87a0e887191da597ddeeac29.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/ef/ -rw-r--r-- root/root 109400 2025-10-21 10:00 ./usr/lib/debug/.build-id/ef/80341081fea2960abd9e8076627db22c235239.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/f6/ -rw-r--r-- root/root 770016 2025-10-21 10:00 ./usr/lib/debug/.build-id/f6/455dadb40bc04ebff5cccf45e8baae1c477963.debug -rw-r--r-- root/root 2260864 2025-10-21 10:00 ./usr/lib/debug/.build-id/f6/4c0e9948656c9ad157e9d6696f1880ecbdbec4.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.build-id/fe/ -rw-r--r-- root/root 2720168 2025-10-21 10:00 ./usr/lib/debug/.build-id/fe/36c67d24551682b9e57bd05467602c45c7de24.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/ -rw-r--r-- root/root 1559688 2025-10-21 10:00 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/python3-rdkit.debug drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/share/doc/python3-rdkit-dbgsym -> python3-rdkit python3-rdkit_202503.6-3_ppc64el.deb ------------------------------------ new Debian package, version 2.0. size 4607180 bytes: control archive=11568 bytes. 1861 bytes, 36 lines control 41013 bytes, 406 lines md5sums 277 bytes, 12 lines * postinst #!/bin/sh 423 bytes, 12 lines * prerm #!/bin/sh Package: python3-rdkit Source: rdkit Version: 202503.6-3 Architecture: ppc64el Maintainer: Debichem Team Installed-Size: 32073 Depends: fonts-freefont-ttf, rdkit-data, python3-numpy2-abi0 | python3-numpy-abi9, python3 (<< 3.14), python3 (>= 3.13~), python3:any, libboost-numpy1.83.0 (>= 1.83.0), libboost-numpy1.83.0-py313, libboost-python1.83.0 (>= 1.83.0), libboost-python1.83.0-py313, libboost-serialization1.83.0 (>= 1.83.0), libc6 (>= 2.34), libcairo2 (>= 1.4.10), libcoordgen3 (>= 3.0.2), libgcc-s1 (>= 3.0), librdkit1t64 (>= 202503.6), libstdc++6 (>= 14) Suggests: rdkit-doc Section: python Priority: optional Homepage: http://www.rdkit.org Description: Collection of cheminformatics and machine-learning software RDKit is a Python/C++ based cheminformatics and machine-learning software environment. Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan algorithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. drwxr-xr-x root/root 0 2025-10-21 10:00 ./ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Avalon/ -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Avalon/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/ -rw-r--r-- root/root 17005 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/AllChem.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/AtomPairs/ -rw-r--r-- root/root 5702 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/AtomPairs/Pairs.py -rw-r--r-- root/root 3721 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/AtomPairs/Sheridan.py -rw-r--r-- root/root 5446 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/AtomPairs/Torsions.py -rw-r--r-- root/root 7565 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/AtomPairs/Utils.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/AtomPairs/__init__.py -rw-r--r-- root/root 33343 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/BRICS.py -rw-r--r-- root/root 19000 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/BuildFragmentCatalog.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/ChemUtils/ -rw-r--r-- root/root 2923 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/ChemUtils/AlignDepict.py -rw-r--r-- root/root 1974 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/ChemUtils/BulkTester.py -rw-r--r-- root/root 1798 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/ChemUtils/DescriptorUtilities.py -rw-r--r-- root/root 2507 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/ChemUtils/SDFToCSV.py -rw-r--r-- root/root 14333 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/ChemUtils/TemplateExpand.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/ChemUtils/__init__.py -rw-r--r-- root/root 719 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/ChemicalFeatures.py -rw-r--r-- root/root 363 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/ChemicalForceFields.py -rw-r--r-- root/root 6097 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Crippen.py -rw-r--r-- root/root 12132 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/DSViewer.py -rw-r--r-- root/root 9068 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Descriptors.py -rw-r--r-- root/root 7194 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Descriptors3D.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Draw/ lrwxrwxrwx root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Draw/FreeSans.ttf -> ../../../../../../share/fonts/truetype/freefont/FreeSans.ttf -rw-r--r-- root/root 17158 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Draw/IPythonConsole.py -rw-r--r-- root/root 13666 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Draw/InteractiveRenderer.py -rw-r--r-- root/root 21996 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Draw/MolDrawing.py -rw-r--r-- root/root 16646 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Draw/SimilarityMaps.py -rw-r--r-- root/root 36229 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Draw/__init__.py -rw-r--r-- root/root 931232 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.cpython-313-powerpc64le-linux-gnu.so drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/EState/ -rw-r--r-- root/root 4036 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/EState/AtomTypes.py -rw-r--r-- root/root 2507 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/EState/EState.py -rw-r--r-- root/root 3567 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/EState/EState_VSA.py -rw-r--r-- root/root 2124 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/EState/Fingerprinter.py -rw-r--r-- root/root 386 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/EState/__init__.py -rw-r--r-- root/root 13108 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/EnumerateHeterocycles.py -rw-r--r-- root/root 14589 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/EnumerateStereoisomers.py -rw-r--r-- root/root 499 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FastSDMolSupplier.py -rw-r--r-- root/root 3310 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FeatFinderCLI.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/FeatMaps/ -rw-r--r-- root/root 5071 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FeatMaps/FeatMapParser.py -rw-r--r-- root/root 3283 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FeatMaps/FeatMapPoint.py -rw-r--r-- root/root 7335 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FeatMaps/FeatMapUtils.py -rw-r--r-- root/root 7487 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FeatMaps/FeatMaps.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FeatMaps/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Features/ -rw-r--r-- root/root 11964 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Features/FeatDirUtilsRD.py -rw-r--r-- root/root 11632 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Features/ShowFeats.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Features/__init__.py -rw-r--r-- root/root 2188 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FilterCatalog.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Fingerprints/ -rw-r--r-- root/root 5697 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Fingerprints/ClusterMols.py -rw-r--r-- root/root 4315 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py -rw-r--r-- root/root 16446 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Fingerprints/FingerprintMols.py -rw-r--r-- root/root 9568 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Fingerprints/MolSimilarity.py -rw-r--r-- root/root 4687 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py -rw-r--r-- root/root 67 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Fingerprints/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Fraggle/ -rw-r--r-- root/root 14344 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Fraggle/FraggleSim.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Fraggle/__init__.py -rw-r--r-- root/root 2420 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FragmentCatalog.py -rw-r--r-- root/root 2276 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FragmentMatcher.py -rw-r--r-- root/root 1618 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Fragments.py -rw-r--r-- root/root 5027 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/FunctionalGroups.py -rw-r--r-- root/root 20596 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/GraphDescriptors.py -rw-r--r-- root/root 1289 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Graphs.py -rw-r--r-- root/root 4359 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Lipinski.py -rw-r--r-- root/root 11744 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MACCSkeys.py -rw-r--r-- root/root 17304 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MCS.py -rw-r--r-- root/root 84 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolCatalog.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/MolDb/ -rw-r--r-- root/root 3434 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolDb/FingerprintUtils.py -rw-r--r-- root/root 408 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolDb/Loader.py -rw-r--r-- root/root 6570 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolDb/Loader_orig.py -rw-r--r-- root/root 5957 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolDb/Loader_sa.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolDb/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/MolKey/ -rw-r--r-- root/root 7077 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolKey/InchiInfo.py -rw-r--r-- root/root 15051 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolKey/MolKey.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolKey/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/MolStandardize/ -rw-r--r-- root/root 908 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolStandardize/__init__.py -rw-r--r-- root/root 1853424 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 14630 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/MolSurf.py -rw-r--r-- root/root 10127 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/PandasPatcher.py -rw-r--r-- root/root 26972 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/PandasTools.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm2D/ -rw-r--r-- root/root 4979 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm2D/Generate.py -rw-r--r-- root/root 1901 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py -rw-r--r-- root/root 4262 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm2D/LazyGenerator.py -rw-r--r-- root/root 4028 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm2D/Matcher.py -rw-r--r-- root/root 10231 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm2D/SigFactory.py -rw-r--r-- root/root 12973 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm2D/Utils.py -rw-r--r-- root/root 1021 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm2D/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm3D/ -rw-r--r-- root/root 41179 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm3D/EmbedLib.py -rw-r--r-- root/root 918 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py -rw-r--r-- root/root 5923 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm3D/Pharmacophore.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Pharm3D/__init__.py -rw-r--r-- root/root 3161 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/PropertyMol.py -rw-r--r-- root/root 8418 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/PyMol.py -rw-r--r-- root/root 11472 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/QED.py -rw-r--r-- root/root 1066 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Randomize.py -rw-r--r-- root/root 20662 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Recap.py -rw-r--r-- root/root 563 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/ReducedGraphs.py -rw-r--r-- root/root 13560 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/RegistrationHash.py -rw-r--r-- root/root 2806 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/SATIS.py -rw-r--r-- root/root 10192 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/SaltRemover.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Scaffolds/ -rw-r--r-- root/root 4187 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Scaffolds/MurckoScaffold.py -rw-r--r-- root/root 180941 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Scaffolds/ScaffoldNetwork.ipynb -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Scaffolds/__init__.py -rw-r--r-- root/root 529024 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 932 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/ShowMols.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/SimpleEnum/ -rw-r--r-- root/root 9120 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/SimpleEnum/Enumerator.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/SimpleEnum/__init__.py -rw-r--r-- root/root 7121 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/SpacialScore.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Subshape/ -rw-r--r-- root/root 10857 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Subshape/BuilderUtils.py -rw-r--r-- root/root 13356 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Subshape/SubshapeAligner.py -rw-r--r-- root/root 4205 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Subshape/SubshapeBuilder.py -rw-r--r-- root/root 2451 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Subshape/SubshapeObjects.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Subshape/__init__.py -rw-r--r-- root/root 1797 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Subshape/demoCombined.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/Suppliers/ -rw-r--r-- root/root 3994 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Suppliers/DbMolSupplier.py -rw-r--r-- root/root 851 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Suppliers/MolSupplier.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/Suppliers/__init__.py -rw-r--r-- root/root 3191 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/TemplateAlign.py -rw-r--r-- root/root 26572 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/TorsionFingerprints.py -rw-r--r-- root/root 9011 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/fmcs/ -rw-r--r-- root/root 141 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/fmcs/__init__.py -rw-r--r-- root/root 160 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/fmcs/fmcs -rw-r--r-- root/root 105526 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/fmcs/fmcs.py -rw-r--r-- root/root 8662 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/inchi.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/nbtests/ -rw-r--r-- root/root 13052 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/nbtests/ChEMBL_quinolones.tsv -rw-r--r-- root/root 8259 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/nbtests/github4823.ipynb -rw-r--r-- root/root 6471 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Chem/nbtests/rdkit-structure-renderer.ipynb -rw-r--r-- root/root 397776 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdAbbreviations.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 67944 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdCIPLabeler.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 1590368 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdChemReactions.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 200280 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdChemicalFeatures.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 200256 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdCoordGen.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 267456 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdDepictor.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 265984 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdDeprotect.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 134128 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdDetermineBonds.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 333296 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdDistGeom.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 134432 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdEnumerateStereoisomers.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 530488 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdFMCS.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 664616 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdFingerprintGenerator.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 266920 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdForceFieldHelpers.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 265528 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdGeneralizedSubstruct.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 535552 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMHFPFingerprint.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 399688 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMIF.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 133928 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMMPA.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 333728 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMolAlign.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 266392 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMolCatalog.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 266232 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMolChemicalFeatures.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 800328 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMolDescriptors.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 265480 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMolEnumerator.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 67960 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMolHash.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 134144 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMolInterchange.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 134120 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMolProcessing.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 200784 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdMolTransforms.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 67912 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdPartialCharges.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 398664 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdRGroupDecomposition.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 267016 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdRascalMCES.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 68200 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdReducedGraphs.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 67944 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdSLNParse.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 200472 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdShapeHelpers.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 1197480 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdSubstructLibrary.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 398456 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdSynthonSpaceSearch.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 266568 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdTautomerQuery.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 3910504 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdchem.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 1191648 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdfiltercatalog.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 332216 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdfragcatalog.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 134000 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdinchi.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 2191256 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdmolfiles.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 1326600 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdmolops.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 463120 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdqueries.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 200904 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Chem/rdtrajectory.cpython-313-powerpc64le-linux-gnu.so drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/DataManip/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/DataManip/Metric/ -rw-r--r-- root/root 363 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DataManip/Metric/__init__.py -rw-r--r-- root/root 133520 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 21 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DataManip/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/DataStructs/ -rw-r--r-- root/root 1192 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DataStructs/BitEnsemble.py -rw-r--r-- root/root 1569 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DataStructs/BitEnsembleDb.py -rw-r--r-- root/root 1132 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DataStructs/BitUtils.py -rw-r--r-- root/root 3876 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DataStructs/HierarchyVis.py -rw-r--r-- root/root 1472 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DataStructs/LazySignature.py -rw-r--r-- root/root 2037 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DataStructs/TopNContainer.py -rw-r--r-- root/root 6411 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DataStructs/VectCollection.py -rw-r--r-- root/root 1600 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DataStructs/__init__.py -rw-r--r-- root/root 1661896 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/DataStructs/cDataStructs.cpython-313-powerpc64le-linux-gnu.so drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Dbase/ -rw-r--r-- root/root 7972 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Dbase/DbConnection.py -rw-r--r-- root/root 5332 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Dbase/DbInfo.py -rw-r--r-- root/root 2069 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Dbase/DbModule.py -rw-r--r-- root/root 6093 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Dbase/DbResultSet.py -rw-r--r-- root/root 13531 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Dbase/DbUtils.py -rw-r--r-- root/root 7599 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Dbase/StorageUtils.py -rw-r--r-- root/root 340 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Dbase/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/DistanceGeometry/ -rw-r--r-- root/root 133760 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/DistanceGeometry/DistGeom.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 46 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/DistanceGeometry/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ForceField/ -rw-r--r-- root/root 44 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ForceField/__init__.py -rw-r--r-- root/root 333800 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ForceField/rdForceField.cpython-313-powerpc64le-linux-gnu.so drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Geometry/ -rw-r--r-- root/root 109 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Geometry/__init__.py -rw-r--r-- root/root 733640 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Geometry/rdGeometry.cpython-313-powerpc64le-linux-gnu.so drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/ -rw-r--r-- root/root 5547 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/Butina.py -rw-r--r-- root/root 4413 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/ClusterUtils.py -rw-r--r-- root/root 15378 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/ClusterVis.py -rw-r--r-- root/root 68104 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/Clustering.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 7805 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/Clusters.py -rw-r--r-- root/root 3099 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/Murtagh.py -rw-r--r-- root/root 3251 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/Resemblance.py -rw-r--r-- root/root 675 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/Standardize.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/__init__.py -rw-r--r-- root/root 882 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Cluster/murtagh_test.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/Data/ -rw-r--r-- root/root 17686 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Data/DataUtils.py -rw-r--r-- root/root 1653 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Data/FindQuantBounds.py -rw-r--r-- root/root 10430 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Data/MLData.py -rw-r--r-- root/root 10595 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Data/Quantize.py -rw-r--r-- root/root 8814 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Data/SplitData.py -rw-r--r-- root/root 7089 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Data/Stats.py -rw-r--r-- root/root 877 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Data/Transforms.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Data/__init__.py -rw-r--r-- root/root 68248 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/Data/cQuantize.cpython-313-powerpc64le-linux-gnu.so drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/Descriptors/ -rw-r--r-- root/root 14135 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Descriptors/CompoundDescriptors.py -rw-r--r-- root/root 1553 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Descriptors/Descriptors.py -rw-r--r-- root/root 3244 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py -rw-r--r-- root/root 12428 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Descriptors/Parser.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Descriptors/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/InfoTheory/ -rw-r--r-- root/root 2321 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/InfoTheory/BitClusterer.py -rw-r--r-- root/root 5481 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/InfoTheory/BitRank.py -rw-r--r-- root/root 89 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/InfoTheory/__init__.py -rw-r--r-- root/root 2820 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/InfoTheory/entropy.py -rw-r--r-- root/root 200016 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.cpython-313-powerpc64le-linux-gnu.so drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/MLUtils/ -rw-r--r-- root/root 6032 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/MLUtils/VoteImg.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/MLUtils/__init__.py -rw-r--r-- root/root 774 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/MatOps.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/SLT/ -rw-r--r-- root/root 3059 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/SLT/Risk.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/SLT/__init__.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/ML/Scoring/ -rw-r--r-- root/root 6387 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Scoring/Scoring.py -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/Scoring/__init__.py -rw-r--r-- root/root 340 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/__init__.py -rw-r--r-- root/root 2483 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/ML/files.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Numerics/ -rw-r--r-- root/root 91 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/Numerics/__init__.py -rw-r--r-- root/root 133616 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/Numerics/rdAlignment.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 2153 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/RDConfig.py -rw-r--r-- root/root 1612 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/RDLogger.py -rw-r--r-- root/root 439 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/RDPaths.py -rw-r--r-- root/root 1602 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/RDRandom.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/SimDivFilters/ -rw-r--r-- root/root 7305 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/SimDivFilters/SimilarityPickers.py -rw-r--r-- root/root 253 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/SimDivFilters/__init__.py -rw-r--r-- root/root 265936 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.cpython-313-powerpc64le-linux-gnu.so -rw-r--r-- root/root 3608 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/TestRunner.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/VLib/ -rw-r--r-- root/root 2728 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/Filter.py -rw-r--r-- root/root 4558 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/Node.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/ -rw-r--r-- root/root 1679 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/DbMolSupply.py -rw-r--r-- root/root 5746 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py -rw-r--r-- root/root 1397 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/SDSupply.py -rw-r--r-- root/root 2668 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py -rw-r--r-- root/root 3877 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/SmartsRemover.py -rw-r--r-- root/root 1497 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py -rw-r--r-- root/root 1995 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/SmilesOutput.py -rw-r--r-- root/root 1899 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/SmilesSupply.py -rw-r--r-- root/root 95 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/__init__.py -rw-r--r-- root/root 1986 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/NodeLib/demo.py -rw-r--r-- root/root 1651 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/Output.py -rw-r--r-- root/root 1501 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/Supply.py -rw-r--r-- root/root 2041 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/Transform.py -rw-r--r-- root/root 13 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/VLib/__init__.py -rw-r--r-- root/root 1838 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/__init__.py -rw-r--r-- root/root 582 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/conftest.py -rw-r--r-- root/root 627 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/pytest.ini -rw-r--r-- root/root 1586944 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/rdBase.cpython-313-powerpc64le-linux-gnu.so drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/PDF/ -rw-r--r-- root/root 22 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PDF/__init__.py -rw-r--r-- root/root 15549 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PDF/pdfdoc.py -rw-r--r-- root/root 38180 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PDF/pdfgen.py -rw-r--r-- root/root 2413 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PDF/pdfgeom.py -rw-r--r-- root/root 20538 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PDF/pdfmetrics.py -rw-r--r-- root/root 9789 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PDF/pdfutils.py -rw-r--r-- root/root 23117 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PDF/pidPDF.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/ -rw-r--r-- root/root 32 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/__init__.py -rw-r--r-- root/root 14301 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pidPIL.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/ -rw-r--r-- root/root 990 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-10.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-10.pil -rw-r--r-- root/root 1254 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-12.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-12.pil -rw-r--r-- root/root 1540 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-14.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-14.pil -rw-r--r-- root/root 1960 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-18.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-18.pil -rw-r--r-- root/root 2829 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-24.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-24.pil -rw-r--r-- root/root 731 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pbm -rw-r--r-- root/root 5142 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pil -rw-r--r-- root/root 5142 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pil.1 -rw-r--r-- root/root 1087 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pil -rw-r--r-- root/root 1370 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pil -rw-r--r-- root/root 1667 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pil -rw-r--r-- root/root 2336 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pil -rw-r--r-- root/root 3316 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pil -rw-r--r-- root/root 733 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm -rw-r--r-- root/root 5142 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pil -rw-r--r-- root/root 1060 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pil -rw-r--r-- root/root 1216 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pil -rw-r--r-- root/root 1566 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pil -rw-r--r-- root/root 2324 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pil -rw-r--r-- root/root 3465 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pil -rw-r--r-- root/root 800 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pbm -rw-r--r-- root/root 5142 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil -rw-r--r-- root/root 1141 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil -rw-r--r-- root/root 1399 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil -rw-r--r-- root/root 1698 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil -rw-r--r-- root/root 2504 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil -rw-r--r-- root/root 3575 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil -rw-r--r-- root/root 823 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm -rw-r--r-- root/root 5142 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil -rw-r--r-- root/root 41265 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/metrics.dat -rw-r--r-- root/root 212 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/removemedium.py -rw-r--r-- root/root 1075 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-10.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-10.pil -rw-r--r-- root/root 1386 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-12.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-12.pil -rw-r--r-- root/root 1641 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil -rw-r--r-- root/root 2361 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil -rw-r--r-- root/root 3404 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil -rw-r--r-- root/root 813 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil -rw-r--r-- root/root 1002 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pil -rw-r--r-- root/root 1325 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pil -rw-r--r-- root/root 1588 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-14.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-14.pil -rw-r--r-- root/root 2305 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-18.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-18.pil -rw-r--r-- root/root 3313 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pil -rw-r--r-- root/root 703 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-8.pbm -rw-r--r-- root/root 5142 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-8.pil -rw-r--r-- root/root 1101 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pil -rw-r--r-- root/root 1418 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pil -rw-r--r-- root/root 1740 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil -rw-r--r-- root/root 2495 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pil -rw-r--r-- root/root 3605 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm -rw-r--r-- root/root 5143 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pil -rw-r--r-- root/root 764 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pbm -rw-r--r-- root/root 5142 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/PS/ -rw-r--r-- root/root 31 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PS/__init__.py -rw-r--r-- root/root 334 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PS/fontinfo.py -rw-r--r-- root/root 19078 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PS/latin1MetricsCache.py -rw-r--r-- root/root 34776 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PS/pidPS.py -rw-r--r-- root/root 17626 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/PS/psmetrics.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/Pyart/ -rw-r--r-- root/root 3163 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/Pyart/Fontmapping.py -rw-r--r-- root/root 40 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/Pyart/__init__.py -rw-r--r-- root/root 8275 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/Pyart/pidPyart.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/Qt/ -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/Qt/__init__.py -rw-r--r-- root/root 11206 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/Qt/pidQt.py -rw-r--r-- root/root 10672 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/Qt/pidQt4.py -rw-r--r-- root/root 1939 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/README drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/ReportLab/ -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/ReportLab/__init__.py -rw-r--r-- root/root 10405 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/ReportLab/pidReportLab.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/SVG/ -rw-r--r-- root/root 44 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/SVG/__init__.py -rw-r--r-- root/root 23674 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/SVG/pidSVG.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/TK/ -rw-r--r-- root/root 20 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/TK/__init__.py -rw-r--r-- root/root 16409 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/TK/pidTK.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/WX/ -rw-r--r-- root/root 20 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/WX/__init__.py -rw-r--r-- root/root 12753 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/WX/pidWX.py -rw-r--r-- root/root 8750 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/WX/pidWxDc.py -rw-r--r-- root/root 154 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/__init__.py -rw-r--r-- root/root 6935 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/colors.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/examples/ -rw-r--r-- root/root 1270 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/examples/formatted-strings.py -rw-r--r-- root/root 2609 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py -rw-r--r-- root/root 2603 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py -rw-r--r-- root/root 600 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/pagesizes.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/patches/ -rw-r--r-- root/root 1197 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path -rw-r--r-- root/root 854 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/patches/Imaging-1.1.1.diff -rw-r--r-- root/root 21546 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/pid.py -rw-r--r-- root/root 17930 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/stringformat.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/tests/ -rw-r--r-- root/root 26 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/tests/__init__.py -rw-r--r-- root/root 14492 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/tests/pidtest.py -rw-r--r-- root/root 431 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/tests/pstests.py -rw-r--r-- root/root 972 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/tests/testallps.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/sping/util/ -rw-r--r-- root/root 12489 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/util/HTMLPiddler.py -rw-r--r-- root/root 16 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/util/__init__.py -rw-r--r-- root/root 318 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/sping/utils.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/lib/python3/dist-packages/rdkit/utils/ -rw-r--r-- root/root 0 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/utils/__init__.py -rw-r--r-- root/root 1788 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/utils/cactvs.py -rw-r--r-- root/root 11838 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/utils/chemdraw.py -rw-r--r-- root/root 2490 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/utils/chemdraw_qax.py -rw-r--r-- root/root 4633 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/utils/chemutils.py -rw-r--r-- root/root 1003 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/utils/fileutils.py -rw-r--r-- root/root 1189 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/utils/listutils.py -rw-r--r-- root/root 113 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/utils/retest.txt -rw-r--r-- root/root 1837 2025-08-29 13:10 ./usr/lib/python3/dist-packages/rdkit/utils/spiral.py drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-21 10:00 ./usr/share/doc/python3-rdkit/ -rw-r--r-- root/root 225 2025-10-21 09:54 ./usr/share/doc/python3-rdkit/TODO.Debian -rw-r--r-- root/root 4810 2025-10-21 10:00 ./usr/share/doc/python3-rdkit/changelog.Debian.gz -rw-r--r-- root/root 132390 2025-08-29 13:10 ./usr/share/doc/python3-rdkit/changelog.gz -rw-r--r-- root/root 64692 2025-10-21 09:54 ./usr/share/doc/python3-rdkit/copyright +------------------------------------------------------------------------------+ | Post Build Thu, 15 Jan 2026 04:06:45 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Thu, 15 Jan 2026 04:06:45 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 15 Jan 2026 04:06:50 +0000 | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 6320512 Build-Time: 1991 Distribution: unstable Host Architecture: ppc64el Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderdeLIy2J/inputs/rdkit_202503.6-3.dsc Machine Architecture: ppc64el Package: rdkit Package-Time: 2020 Source-Version: 202503.6-3 Space: 6320512 Status: successful Version: 202503.6-3 -------------------------------------------------------------------------------- Finished at 2026-01-15T04:06:36Z Build needed 00:33:40, 6320512k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdeLIy2J/out checking librdkit-dev_202503.6-3_ppc64el.deb: size... sha1... sha256... md5... all OK checking librdkit1t64-dbgsym_202503.6-3_ppc64el.deb: size differs for librdkit1t64-dbgsym_202503.6-3_ppc64el.deb