=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdjWrKcz/inputs/cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.buildinfo Source: cctbx Version: 2026.7+ds2+~3.30.0+ds1-3 rebuilderd-worker node: osuosl6-ppc64el +------------------------------------------------------------------------------+ | Downloading sources Sat, 12 Sep 2026 07:28:59 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [60.7 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [193 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [230 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [1,840 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [219 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,412 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [309 kB] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7,876 B] Get:18 https://deb.debian.org/debian forky/main Sources [11.2 MB] Get:19 https://deb.debian.org/debian sid/main Sources [11.9 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.6 kB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Get:22 https://deb.debian.org/debian experimental/main Sources [432 kB] Fetched 35.6 MB in 5s (6,784 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.7%2bds2%2b%7e3.30.0%2bds1-3.dsc' cctbx_2026.7+ds2+~3.30.0+ds1-3.dsc 4191 SHA256:dfc6f8eefdd1d4663ff7305be7857cb72ec26cc798fe0f7c0727706e7b9e7c46 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.7%2bds2%2b%7e3.30.0%2bds1.orig-dxtbx.tar.xz' cctbx_2026.7+ds2+~3.30.0+ds1.orig-dxtbx.tar.xz 402728 SHA256:20ef2429e1f97fb191cbcca969803c16cb1406e0bc4be613c3771ae44ac8c80d 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.7%2bds2%2b%7e3.30.0%2bds1.orig.tar.xz' cctbx_2026.7+ds2+~3.30.0+ds1.orig.tar.xz 105781860 SHA256:9822e86efe99bedec27b425ed7fcc38d09d0ee1eedf536e012521a43ac09d718 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.7%2bds2%2b%7e3.30.0%2bds1-3.debian.tar.xz' cctbx_2026.7+ds2+~3.30.0+ds1-3.debian.tar.xz 419828 SHA256:a982ca09b773e97fa3f94df396bffd196dd99a504c1bed0152ed1b7e31f9ef90 20ef2429e1f97fb191cbcca969803c16cb1406e0bc4be613c3771ae44ac8c80d cctbx_2026.7+ds2+~3.30.0+ds1.orig-dxtbx.tar.xz 9822e86efe99bedec27b425ed7fcc38d09d0ee1eedf536e012521a43ac09d718 cctbx_2026.7+ds2+~3.30.0+ds1.orig.tar.xz a982ca09b773e97fa3f94df396bffd196dd99a504c1bed0152ed1b7e31f9ef90 cctbx_2026.7+ds2+~3.30.0+ds1-3.debian.tar.xz dfc6f8eefdd1d4663ff7305be7857cb72ec26cc798fe0f7c0727706e7b9e7c46 cctbx_2026.7+ds2+~3.30.0+ds1-3.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sat, 12 Sep 2026 07:29:09 +0000 | +------------------------------------------------------------------------------+ Rebuilding cctbx=2026.7+ds2+~3.30.0+ds1-3 in /srv/rebuilderd/tmp/rebuilderdjWrKcz/inputs now. + /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdjWrKcz/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdjWrKcz/inputs/cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.buildinfo /srv/rebuilderd/tmp/rebuilderdjWrKcz/inputs/cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 I: verifying dsc... successful! WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/pool/main/h/haskell-texmath/libghc-texmath-dev_0.13.2.1-1_ppc64el.2724641.part Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable InRelease [193 kB] Get:3 http://deb.debian.org/debian unstable/main ppc64el Packages [10.5 MB] Get:4 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el Packages [10.5 MB] Fetched 21.4 MB in 3s (7291 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260902T022825Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main ppc64el libabsl20260526 ppc64el 20260526.0-2 [608 kB] Get:2 http://deb.debian.org/debian unstable/main ppc64el libacl1 ppc64el 2.4.0-1 [39.2 kB] Get:3 http://deb.debian.org/debian unstable/main ppc64el adwaita-icon-theme all 50.0-2 [506 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el libasound2-data all 1.2.16.1-1 [19.4 kB] Get:5 http://deb.debian.org/debian unstable/main ppc64el libasound2t64 ppc64el 1.2.16.1-1 [428 kB] Get:6 http://deb.debian.org/debian unstable/main ppc64el libann-cctbx-dev ppc64el 1.1.2+doc-9+b1 [48.8 kB] Get:7 http://deb.debian.org/debian unstable/main ppc64el libann-cctbx0 ppc64el 1.1.2+doc-9+b1 [34.6 kB] Get:8 http://deb.debian.org/debian unstable/main ppc64el libaom3 ppc64el 3.14.1-1 [1417 kB] Get:9 http://deb.debian.org/debian unstable/main ppc64el libapparmor1 ppc64el 4.1.8-2 [39.2 kB] Get:10 http://deb.debian.org/debian unstable/main ppc64el architecture-properties ppc64el 0.2.6+b2 [2636 B] Get:11 http://deb.debian.org/debian unstable/main ppc64el at-spi2-common all 2.61.90-1 [171 kB] Get:12 http://deb.debian.org/debian unstable/main ppc64el autoconf all 2.73-2 [516 kB] Get:13 http://deb.debian.org/debian unstable/main ppc64el automake all 1:1.18.1-4 [877 kB] Get:14 http://deb.debian.org/debian unstable/main ppc64el autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://deb.debian.org/debian unstable/main ppc64el base-files ppc64el 14.2 [88.0 kB] Get:16 http://deb.debian.org/debian unstable/main ppc64el base-passwd ppc64el 3.6.8 [55.8 kB] Get:17 http://deb.debian.org/debian unstable/main ppc64el bubblewrap ppc64el 0.12.0-1 [55.0 kB] Get:18 http://deb.debian.org/debian unstable/main ppc64el build-essential ppc64el 12.12 [4628 B] Get:19 http://deb.debian.org/debian unstable/main ppc64el bzip2 ppc64el 1.0.8-6+b2 [41.0 kB] Get:20 http://deb.debian.org/debian unstable/main ppc64el ca-certificates all 20260816 [134 kB] Get:21 http://deb.debian.org/debian unstable/main ppc64el coreutils ppc64el 9.10-1 [3186 kB] Get:22 http://deb.debian.org/debian unstable/main ppc64el dash ppc64el 0.5.12-12 [104 kB] Get:23 http://deb.debian.org/debian unstable/main ppc64el dbus ppc64el 1.16.2-5+b1 [70.6 kB] Get:24 http://deb.debian.org/debian unstable/main ppc64el dbus-bin ppc64el 1.16.2-5+b1 [79.7 kB] Get:25 http://deb.debian.org/debian unstable/main ppc64el dbus-daemon ppc64el 1.16.2-5+b1 [167 kB] Get:26 http://deb.debian.org/debian unstable/main ppc64el dbus-session-bus-common all 1.16.2-5 [48.7 kB] Get:27 http://deb.debian.org/debian unstable/main ppc64el dbus-system-bus-common all 1.16.2-5 [49.6 kB] Get:28 http://deb.debian.org/debian unstable/main ppc64el dbus-user-session ppc64el 1.16.2-5+b1 [48.8 kB] Get:29 http://deb.debian.org/debian unstable/main ppc64el dconf-gsettings-backend ppc64el 0.49.0-4+b1 [31.9 kB] Get:30 http://deb.debian.org/debian unstable/main ppc64el dconf-service ppc64el 0.49.0-4+b1 [35.1 kB] Get:31 http://deb.debian.org/debian unstable/main ppc64el debconf all 1.5.92 [123 kB] Get:32 http://deb.debian.org/debian unstable/main ppc64el debhelper all 14.3 [934 kB] Get:33 http://deb.debian.org/debian unstable/main ppc64el debianutils ppc64el 5.24 [94.2 kB] Get:34 http://deb.debian.org/debian unstable/main ppc64el dh-exec ppc64el 0.31 [26.7 kB] Get:35 http://deb.debian.org/debian unstable/main ppc64el dh-python all 7.20260623 [114 kB] Get:36 http://deb.debian.org/debian unstable/main ppc64el diffutils ppc64el 1:3.12-1 [413 kB] Get:37 http://deb.debian.org/debian unstable/main ppc64el dwz ppc64el 0.17-1 [114 kB] Get:38 http://deb.debian.org/debian unstable/main ppc64el comerr-dev ppc64el 2.1-1.47.4-1+b1 [51.8 kB] Get:39 http://deb.debian.org/debian unstable/main ppc64el fftw-dev ppc64el 2.1.5-8 [273 kB] Get:40 http://deb.debian.org/debian unstable/main ppc64el fftw2 ppc64el 2.1.5-8 [229 kB] Get:41 http://deb.debian.org/debian unstable/main ppc64el file ppc64el 1:5.47-4 [44.0 kB] Get:42 http://deb.debian.org/debian unstable/main ppc64el findutils ppc64el 4.11.0-2 [812 kB] Get:43 http://deb.debian.org/debian unstable/main ppc64el fontconfig ppc64el 2.17.1-5 [193 kB] Get:44 http://deb.debian.org/debian unstable/main ppc64el fontconfig-config ppc64el 2.17.1-5 [56.0 kB] Get:45 http://deb.debian.org/debian unstable/main ppc64el fonts-dejavu-core all 2.37-9 [840 kB] Get:46 http://deb.debian.org/debian unstable/main ppc64el fonts-dejavu-extra all 2.37-9 [1791 kB] Get:47 http://deb.debian.org/debian unstable/main ppc64el fonts-dejavu-mono all 2.37-9 [488 kB] Get:48 http://deb.debian.org/debian unstable/main ppc64el fonts-font-awesome all 7.3.0+dfsg-1 [677 kB] Get:49 http://deb.debian.org/debian unstable/main ppc64el fonts-font-awesome-legacy all 6-3 [1547 kB] Get:50 http://deb.debian.org/debian unstable/main ppc64el fonts-lato all 2.015-1 [2780 kB] Get:51 http://deb.debian.org/debian unstable/main ppc64el fonts-urw-base35 all 20200910-9 [10.8 MB] Get:52 http://deb.debian.org/debian unstable/main ppc64el cpp ppc64el 4:16.1.0-3 [1580 B] Get:53 http://deb.debian.org/debian unstable/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:16.1.0-3 [4476 B] Get:54 http://deb.debian.org/debian unstable/main ppc64el g++ ppc64el 4:16.1.0-3 [1336 B] Get:55 http://deb.debian.org/debian unstable/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:16.1.0-3 [1204 B] Get:56 http://deb.debian.org/debian unstable/main ppc64el gcc ppc64el 4:16.1.0-3 [5152 B] Get:57 http://deb.debian.org/debian unstable/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:16.1.0-3 [1444 B] Get:58 http://deb.debian.org/debian unstable/main ppc64el glycin-loaders ppc64el 2.1.5+ds-2 [3608 kB] Get:59 http://deb.debian.org/debian unstable/main ppc64el glycin-thumbnailers ppc64el 2.1.5+ds-2 [299 kB] Get:60 http://deb.debian.org/debian unstable/main ppc64el grep ppc64el 3.12-1 [455 kB] Get:61 http://deb.debian.org/debian unstable/main ppc64el groff-base ppc64el 1.24.1-1 [1336 kB] Get:62 http://deb.debian.org/debian unstable/main ppc64el gzip ppc64el 1.14-1 [147 kB] Get:63 http://deb.debian.org/debian unstable/main ppc64el hdf5-helpers ppc64el 2.2.0+repack-4 [27.6 kB] Get:64 http://deb.debian.org/debian unstable/main ppc64el hicolor-icon-theme all 0.18-2 [11.8 kB] Get:65 http://deb.debian.org/debian unstable/main ppc64el hostname ppc64el 3.25 [11.3 kB] Get:66 http://deb.debian.org/debian unstable/main ppc64el init-system-helpers all 1.69+nmu1 [37.1 kB] Get:67 http://deb.debian.org/debian unstable/main ppc64el intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:68 http://deb.debian.org/debian unstable/main ppc64el jq ppc64el 1.8.2-1 [88.8 kB] Get:69 http://deb.debian.org/debian unstable/main ppc64el krb5-multidev ppc64el 1.22.1-3 [125 kB] Get:70 http://deb.debian.org/debian unstable/main ppc64el libaec-dev ppc64el 1.1.7-1 [28.5 kB] Get:71 http://deb.debian.org/debian unstable/main ppc64el libaec0 ppc64el 1.1.7-1 [24.6 kB] Get:72 http://deb.debian.org/debian unstable/main ppc64el libantlr3c-3.4-0 ppc64el 3.4+dfsg-4+b3 [56.5 kB] Get:73 http://deb.debian.org/debian unstable/main ppc64el libantlr3c-dev ppc64el 3.4+dfsg-4+b3 [141 kB] Get:74 http://deb.debian.org/debian unstable/main ppc64el libarchive-zip-perl all 1.68-1 [104 kB] Get:75 http://deb.debian.org/debian unstable/main ppc64el libasyncns0 ppc64el 0.8-8 [13.2 kB] Get:76 http://deb.debian.org/debian unstable/main ppc64el fonts-lyx all 2.5.2-1 [190 kB] Get:77 http://deb.debian.org/debian unstable/main ppc64el ibverbs-providers ppc64el 64.0-1 [421 kB] Get:78 http://deb.debian.org/debian unstable/main ppc64el libamdhip64-6 ppc64el 6.4.3-5 [8993 kB] Get:79 http://deb.debian.org/debian unstable/main ppc64el libamd-comgr3 ppc64el 7.0.2+dfsg-3 [13.8 MB] Get:80 http://deb.debian.org/debian unstable/main ppc64el dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:81 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el bash ppc64el 5.3-3+b1 [1606 kB] Get:82 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el binutils ppc64el 2.47-2 [70.2 kB] Get:83 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el binutils-common ppc64el 2.47-2 [2685 kB] Get:84 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.47-2 [912 kB] Get:85 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el dh-autoreconf all 22 [12.2 kB] Get:86 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el dpkg ppc64el 1.23.7 [1545 kB] Get:87 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el dpkg-dev all 1.23.7 [1318 kB] Get:88 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el cpp-16 ppc64el 16.2.0-1 [1288 B] Get:89 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el cpp-16-powerpc64le-linux-gnu ppc64el 16.2.0-1 [68.8 MB] Get:90 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el g++-16 ppc64el 16.2.0-1 [33.9 kB] Get:91 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el g++-16-powerpc64le-linux-gnu ppc64el 16.2.0-1 [74.4 MB] Get:92 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el gcc-16 ppc64el 16.2.0-1 [532 kB] Get:93 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el gcc-16-base ppc64el 16.2.0-1 [38.0 kB] Get:94 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el gcc-16-powerpc64le-linux-gnu ppc64el 16.2.0-1 [77.6 MB] Get:95 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libasan8 ppc64el 16.2.0-1 [2794 kB] Get:96 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el autopoint all 1.0-3 [820 kB] Get:97 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el gettext ppc64el 1.0-3 [2722 kB] Get:98 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el gettext-base ppc64el 1.0-3 [353 kB] Get:99 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el gtk-update-icon-cache ppc64el 4.22.4+ds-1 [42.0 kB] Get:100 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el bsdextrautils ppc64el 2.42.2-4 [128 kB] Fetched 298 MB in 2s (177 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/g++-16_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/comerr-dev_2.1-1.47.4-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/coreutils_9.10-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fonts-dejavu-core_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dh-autoreconf_22_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libasound2-data_1.2.16.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/ibverbs-providers_64.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libamdhip64-6_6.4.3-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/autopoint_1.0-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libann-cctbx0_1.1.2+doc-9+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fonts-font-awesome-legacy_6-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/adwaita-icon-theme_50.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/bsdextrautils_2.42.2-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fonts-dejavu-mono_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dbus-daemon_1.16.2-5+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fonts-lato_2.015-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dconf-gsettings-backend_0.49.0-4+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dbus-user-session_1.16.2-5+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/jq_1.8.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/autoconf_2.73-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libacl1_2.4.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libaec0_1.1.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/gettext-base_1.0-3_ppc64el.deb' dpkg-name: info: moved 'file_1%3a5.47-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpjd2d3wir/file_5.47-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/groff-base_1.24.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/autotools-dev_20240727.1+nmu1_all.deb' dpkg-name: info: moved 'g++_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpjd2d3wir/g++_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fontconfig_2.17.1-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/gcc-16-base_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dconf-service_0.49.0-4+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/krb5-multidev_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fftw2_2.1.5-8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fonts-dejavu-extra_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dh-strip-nondeterminism_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libasound2t64_1.2.16.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libamd-comgr3_7.0.2+dfsg-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/glycin-thumbnailers_2.1.5+ds-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/glycin-loaders_2.1.5+ds-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/base-passwd_3.6.8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libasyncns0_0.8-8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/gcc-16_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/debconf_1.5.92_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/architecture-properties_0.2.6+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/hicolor-icon-theme_0.18-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libantlr3c-dev_3.4+dfsg-4+b3_ppc64el.deb' dpkg-name: info: moved 'cpp-powerpc64le-linux-gnu_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpjd2d3wir/cpp-powerpc64le-linux-gnu_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libaec-dev_1.1.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/cpp-16_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/gtk-update-icon-cache_4.22.4+ds-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fonts-lyx_2.5.2-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dpkg-dev_1.23.7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dh-exec_0.31_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fonts-urw-base35_20200910-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/findutils_4.11.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/build-essential_12.12_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/grep_3.12-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libasan8_16.2.0-1_ppc64el.deb' dpkg-name: info: moved 'g++-powerpc64le-linux-gnu_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpjd2d3wir/g++-powerpc64le-linux-gnu_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dh-python_7.20260623_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/ca-certificates_20260816_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fontconfig-config_2.17.1-5_ppc64el.deb' dpkg-name: info: moved 'gcc_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpjd2d3wir/gcc_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/init-system-helpers_1.69+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dbus_1.16.2-5+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/binutils-common_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/at-spi2-common_2.61.90-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dbus-session-bus-common_1.16.2-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/gzip_1.14-1_ppc64el.deb' dpkg-name: info: moved 'gcc-powerpc64le-linux-gnu_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpjd2d3wir/gcc-powerpc64le-linux-gnu_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/bzip2_1.0.8-6+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/gettext_1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/debianutils_5.24_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/bash_5.3-3+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libapparmor1_4.1.8-2_ppc64el.deb' dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmpjd2d3wir/automake_1.18.1-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/gcc-16-powerpc64le-linux-gnu_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dash_0.5.12-12_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dbus-bin_1.16.2-5+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/hdf5-helpers_2.2.0+repack-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/bubblewrap_0.12.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libarchive-zip-perl_1.68-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fftw-dev_2.1.5-8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dwz_0.17-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libabsl20260526_20260526.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libantlr3c-3.4-0_3.4+dfsg-4+b3_ppc64el.deb' dpkg-name: info: moved 'diffutils_1%3a3.12-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpjd2d3wir/diffutils_3.12-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/binutils_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libann-cctbx-dev_1.1.2+doc-9+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/debhelper_14.3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dbus-system-bus-common_1.16.2-5_all.deb' dpkg-name: info: moved 'cpp_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpjd2d3wir/cpp_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/hostname_3.25_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/base-files_14.2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/intltool-debian_0.35.0+20060710.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/cpp-16-powerpc64le-linux-gnu_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/fonts-font-awesome_7.3.0+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/binutils-powerpc64le-linux-gnu_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/libaom3_3.14.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/dpkg_1.23.7_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd2d3wir/g++-16-powerpc64le-linux-gnu_16.2.0-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libatk-bridge2.0-0t64 ppc64el 2.61.90-1 [70.3 kB] Get:2 http://deb.debian.org/debian unstable/main ppc64el libatk1.0-0t64 ppc64el 2.61.90-1 [53.3 kB] Get:3 http://deb.debian.org/debian unstable/main ppc64el libatspi2.0-0t64 ppc64el 2.61.90-1 [88.5 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el libattr1 ppc64el 1:2.6.0-1 [25.5 kB] Get:5 http://deb.debian.org/debian unstable/main ppc64el libaudit-common all 1:4.1.2-1 [14.3 kB] Get:6 http://deb.debian.org/debian unstable/main ppc64el libavahi-client3 ppc64el 0.8-18 [51.3 kB] Get:7 http://deb.debian.org/debian unstable/main ppc64el libavahi-common-data ppc64el 0.8-18 [113 kB] Get:8 http://deb.debian.org/debian unstable/main ppc64el libavahi-common3 ppc64el 0.8-18 [46.2 kB] Get:9 http://deb.debian.org/debian unstable/main ppc64el libboost-dev ppc64el 1.90.0.2+nmu1 [3200 B] Get:10 http://deb.debian.org/debian unstable/main ppc64el libboost-numpy-dev ppc64el 1.90.0.2+nmu1 [3032 B] Get:11 http://deb.debian.org/debian unstable/main ppc64el libboost-python-dev ppc64el 1.90.0.2+nmu1 [3292 B] Get:12 http://deb.debian.org/debian unstable/main ppc64el libboost-thread-dev ppc64el 1.90.0.2+nmu1 [3020 B] Get:13 http://deb.debian.org/debian unstable/main ppc64el libboost-timer-dev ppc64el 1.90.0.2+nmu1 [3120 B] Get:14 http://deb.debian.org/debian unstable/main ppc64el libbz2-1.0 ppc64el 1.0.8-6+b2 [44.2 kB] Get:15 http://deb.debian.org/debian unstable/main ppc64el libcairo-gobject2 ppc64el 1.18.4-3+b1 [129 kB] Get:16 http://deb.debian.org/debian unstable/main ppc64el libcairo2 ppc64el 1.18.4-3+b1 [583 kB] Get:17 http://deb.debian.org/debian unstable/main ppc64el libdebconfclient0 ppc64el 0.283 [7608 B] Get:18 http://deb.debian.org/debian unstable/main ppc64el libclipper-dev ppc64el 2.1.20201109-2+b4 [82.4 kB] Get:19 http://deb.debian.org/debian unstable/main ppc64el libclipper2 ppc64el 2.1.20201109-2+b4 [1157 kB] Get:20 http://deb.debian.org/debian unstable/main ppc64el libcolord2 ppc64el 1.4.8-3 [143 kB] Get:21 http://deb.debian.org/debian unstable/main ppc64el libcups2t64 ppc64el 2.4.18-1 [289 kB] Get:22 http://deb.debian.org/debian unstable/main ppc64el libdav1d7 ppc64el 1.5.4-1 [412 kB] Get:23 http://deb.debian.org/debian unstable/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-11+b1 [750 kB] Get:24 http://deb.debian.org/debian unstable/main ppc64el libdbus-1-3 ppc64el 1.16.2-5+b1 [190 kB] Get:25 http://deb.debian.org/debian unstable/main ppc64el libdconf1 ppc64el 0.49.0-4+b1 [45.7 kB] Get:26 http://deb.debian.org/debian unstable/main ppc64el libdebhelper-perl all 14.3 [77.3 kB] Get:27 http://deb.debian.org/debian unstable/main ppc64el libdouble-conversion3 ppc64el 3.4.0-1+b1 [43.3 kB] Get:28 http://deb.debian.org/debian unstable/main ppc64el libcom-err2 ppc64el 1.47.4-1+b1 [19.8 kB] Get:29 http://deb.debian.org/debian unstable/main ppc64el libelf1t64 ppc64el 0.196-1 [68.0 kB] Get:30 http://deb.debian.org/debian unstable/main ppc64el libblas3 ppc64el 3.12.1-8 [168 kB] Get:31 http://deb.debian.org/debian unstable/main ppc64el libavif16 ppc64el 1.4.2-1 [161 kB] Get:32 http://deb.debian.org/debian unstable/main ppc64el libbsd0 ppc64el 0.12.2-3 [136 kB] Get:33 http://deb.debian.org/debian unstable/main ppc64el libcap2 ppc64el 1:2.78-1+b1 [30.4 kB] Get:34 http://deb.debian.org/debian unstable/main ppc64el libccp4-data all 8.0.0-5 [62.5 kB] Get:35 http://deb.debian.org/debian unstable/main ppc64el libccp4-dev ppc64el 8.0.0-5+b1 [42.7 kB] Get:36 http://deb.debian.org/debian unstable/main ppc64el libccp4c0t64 ppc64el 8.0.0-5+b1 [102 kB] Get:37 http://deb.debian.org/debian unstable/main ppc64el libccp4f0t64 ppc64el 8.0.0-5+b1 [186 kB] Get:38 http://deb.debian.org/debian unstable/main ppc64el libcloudproviders0 ppc64el 0.4.1-1 [29.8 kB] Get:39 http://deb.debian.org/debian unstable/main ppc64el libdatrie1 ppc64el 0.2.14-2 [41.1 kB] Get:40 http://deb.debian.org/debian unstable/main ppc64el libdecor-0-0 ppc64el 0.2.5-1+b1 [17.1 kB] Get:41 http://deb.debian.org/debian unstable/main ppc64el libdeflate-dev ppc64el 1.25-1 [52.2 kB] Get:42 http://deb.debian.org/debian unstable/main ppc64el libdeflate0 ppc64el 1.25-1 [44.0 kB] Get:43 http://deb.debian.org/debian unstable/main ppc64el libdrm-amdgpu1 ppc64el 2.4.134-3 [25.2 kB] Get:44 http://deb.debian.org/debian unstable/main ppc64el libdrm-common all 2.4.134-3 [7860 B] Get:45 http://deb.debian.org/debian unstable/main ppc64el libdrm2 ppc64el 2.4.134-3 [42.9 kB] Get:46 http://deb.debian.org/debian unstable/main ppc64el libedit2 ppc64el 3.1-20260512-1 [102 kB] Get:47 http://deb.debian.org/debian unstable/main ppc64el libepoxy0 ppc64el 1.5.10-2+b2 [205 kB] Get:48 http://deb.debian.org/debian unstable/main ppc64el libegl1 ppc64el 1.7.0-3+b1 [40.4 kB] Get:49 http://deb.debian.org/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.5.2+20251210-1 [104 kB] Get:50 http://deb.debian.org/debian unstable/main ppc64el libclang-common-21-dev ppc64el 1:21.1.8-10 [768 kB] Get:51 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libaudit1 ppc64el 1:4.1.2-1+b1 [62.6 kB] Get:52 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libbinutils ppc64el 2.47-2 [629 kB] Get:53 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libctf-nobfd0 ppc64el 2.47-2 [173 kB] Get:54 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libctf0 ppc64el 2.47-2 [104 kB] Get:55 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-atomic1.90-dev ppc64el 1.90.0-6.1 [228 kB] Get:56 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-atomic1.90.0 ppc64el 1.90.0-6.1 [227 kB] Get:57 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-chrono1.90-dev ppc64el 1.90.0-6.1 [246 kB] Get:58 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-chrono1.90.0 ppc64el 1.90.0-6.1 [239 kB] Get:59 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-container1.90-dev ppc64el 1.90.0-6.1 [263 kB] Get:60 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-container1.90.0 ppc64el 1.90.0-6.1 [255 kB] Get:61 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-date-time1.90-dev ppc64el 1.90.0-6.1 [231 kB] Get:62 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-date-time1.90.0 ppc64el 1.90.0-6.1 [222 kB] Get:63 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-exception1.90-dev ppc64el 1.90.0-6.1 [222 kB] Get:64 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-graph1.90-dev ppc64el 1.90.0-6.1 [386 kB] Get:65 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-graph1.90.0 ppc64el 1.90.0-6.1 [357 kB] Get:66 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-numpy1.90-dev ppc64el 1.90.0-6.1 [243 kB] Get:67 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-numpy1.90.0 ppc64el 1.90.0-6.1 [238 kB] Get:68 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-python1.90-dev ppc64el 1.90.0-6.1 [360 kB] Get:69 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-python1.90.0 ppc64el 1.90.0-6.1 [356 kB] Get:70 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-regex1.90-dev ppc64el 1.90.0-6.1 [351 kB] Get:71 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-regex1.90.0 ppc64el 1.90.0-6.1 [331 kB] Get:72 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-serialization1.90-dev ppc64el 1.90.0-6.1 [386 kB] Get:73 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-serialization1.90.0 ppc64el 1.90.0-6.1 [331 kB] Get:74 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-test1.90-dev ppc64el 1.90.0-6.1 [574 kB] Get:75 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-test1.90.0 ppc64el 1.90.0-6.1 [481 kB] Get:76 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-thread1.90-dev ppc64el 1.90.0-6.1 [269 kB] Get:77 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-thread1.90.0 ppc64el 1.90.0-6.1 [258 kB] Get:78 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-timer1.90-dev ppc64el 1.90.0-6.1 [229 kB] Get:79 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost-timer1.90.0 ppc64el 1.90.0-6.1 [244 kB] Get:80 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libboost1.90-dev ppc64el 1.90.0-6.1 [11.3 MB] Get:81 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libbrotli-dev ppc64el 1.2.0-4 [354 kB] Get:82 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libbrotli1 ppc64el 1.2.0-4 [337 kB] Get:83 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libcbf-dev ppc64el 0.9.7+dfsg1-5.1+b2 [511 kB] Get:84 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libcbf1t64 ppc64el 0.9.7+dfsg1-5.1+b2 [396 kB] Get:85 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libcurl4-gnutls ppc64el 8.22.0~rc3-1 [455 kB] Get:86 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libcurl4-openssl-dev ppc64el 8.22.0~rc3-1 [607 kB] Get:87 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libcurl4t64 ppc64el 8.22.0~rc3-1 [459 kB] Get:88 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libdpkg-perl all 1.23.7 [669 kB] Get:89 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libeigen3-dev all 3.4.0-5 [1034 kB] Get:90 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libatomic1 ppc64el 16.2.0-1 [10.2 kB] Get:91 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libcc1-0 ppc64el 16.2.0-1 [45.3 kB] Get:92 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libc-bin ppc64el 2.43-4 [655 kB] Get:93 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libc-dev-bin ppc64el 2.43-4 [39.3 kB] Get:94 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libc-gconv-modules-extra ppc64el 2.43-4 [1130 kB] Get:95 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libc6 ppc64el 2.43-4 [1746 kB] Get:96 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libc6-dev ppc64el 2.43-4 [1978 kB] Get:97 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libcap-ng0 ppc64el 0.9.5-1 [19.1 kB] Get:98 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libde265-0 ppc64el 1.1.1-1 [187 kB] Get:99 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libegl-mesa0 ppc64el 26.1.6-1 [136 kB] Get:100 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libblkid1 ppc64el 2.42.2-4 [208 kB] Fetched 37.6 MB in 0s (119 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libc-bin_2.43-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libc6_2.43-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libavahi-client3_0.8-18_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-timer1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdconf1_0.49.0-4+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdebconfclient0_0.283_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-serialization1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcloudproviders0_0.4.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-chrono1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libbinutils_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libccp4-data_8.0.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcc1-0_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libeigen3-dev_3.4.0-5_all.deb' dpkg-name: info: moved 'libattr1_1%3a2.6.0-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphrwup4kq/libattr1_2.6.0-1_ppc64el.deb' dpkg-name: 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'/srv/rebuilderd/tmp/tmphrwup4kq/libc-dev-bin_2.43-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcbf1t64_0.9.7+dfsg1-5.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcurl4-openssl-dev_8.22.0~rc3-1_ppc64el.deb' dpkg-name: info: moved 'libcap2_1%3a2.78-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphrwup4kq/libcap2_2.78-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-timer-dev_1.90.0.2+nmu1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-regex1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-test1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libelf1t64_0.196-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-atomic1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: info: moved 'libclang-common-21-dev_1%3a21.1.8-10_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphrwup4kq/libclang-common-21-dev_21.1.8-10_ppc64el.deb' dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphrwup4kq/libaudit1_4.1.2-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-python1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdpkg-perl_1.23.7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcap-ng0_0.9.5-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdebhelper-perl_14.3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcairo-gobject2_1.18.4-3+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libblas3_3.12.1-8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdrm-amdgpu1_2.4.134-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-thread-dev_1.90.0.2+nmu1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libavahi-common3_0.8-18_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdav1d7_1.5.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libblkid1_2.42.2-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdrm2_2.4.134-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdbus-1-3_1.16.2-5+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libccp4-dev_8.0.0-5+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-test1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libatomic1_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-python-dev_1.90.0.2+nmu1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libedit2_3.1-20260512-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libatk1.0-0t64_2.61.90-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-timer1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-regex1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libccp4c0t64_8.0.0-5+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libc6-dev_2.43-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-container1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-numpy-dev_1.90.0.2+nmu1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-atomic1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-date-time1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-python1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-graph1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libatspi2.0-0t64_2.61.90-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcom-err2_1.47.4-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-chrono1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libegl1_1.7.0-3+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdeflate0_1.25-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libavif16_1.4.2-1_ppc64el.deb' dpkg-name: info: moved 'libcrypt1_1%3a4.5.2+20251210-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphrwup4kq/libcrypt1_4.5.2+20251210-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libctf-nobfd0_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libbsd0_0.12.2-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libbz2-1.0_1.0.8-6+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-serialization1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libegl-mesa0_26.1.6-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libatk-bridge2.0-0t64_2.61.90-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdatrie1_0.2.14-2_ppc64el.deb' dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmphrwup4kq/libaudit-common_4.1.2-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libepoxy0_1.5.10-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-numpy1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libctf0_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdecor-0-0_0.2.5-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdeflate-dev_1.25-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libclipper-dev_2.1.20201109-2+b4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-thread1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcups2t64_2.4.18-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libde265-0_1.1.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libccp4f0t64_8.0.0-5+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libbrotli-dev_1.2.0-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcurl4-gnutls_8.22.0~rc3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-exception1.90-dev_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdouble-conversion3_3.4.0-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-numpy1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-thread1.90.0_1.90.0-6.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcairo2_1.18.4-3+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libdrm-common_2.4.134-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libc-gconv-modules-extra_2.43-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libcbf-dev_0.9.7+dfsg1-5.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwup4kq/libboost-date-time1.90-dev_1.90.0-6.1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libexpat1 ppc64el 2.8.4-1 [125 kB] Get:2 http://deb.debian.org/debian unstable/main ppc64el libexpat1-dev ppc64el 2.8.4-1 [182 kB] Get:3 http://deb.debian.org/debian unstable/main ppc64el libfftw3-bin ppc64el 3.3.11-1 [45.3 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el libfftw3-dev ppc64el 3.3.11-1 [1209 kB] Get:5 http://deb.debian.org/debian unstable/main ppc64el libfftw3-double3 ppc64el 3.3.11-1 [423 kB] Get:6 http://deb.debian.org/debian unstable/main ppc64el libfftw3-long3 ppc64el 3.3.11-1 [563 kB] Get:7 http://deb.debian.org/debian unstable/main ppc64el libfftw3-single3 ppc64el 3.3.11-1 [430 kB] Get:8 http://deb.debian.org/debian unstable/main ppc64el libflac14 ppc64el 1.5.0+ds-5+b1 [177 kB] Get:9 http://deb.debian.org/debian unstable/main ppc64el libfontconfig1 ppc64el 2.17.1-5 [165 kB] Get:10 http://deb.debian.org/debian unstable/main ppc64el libglut3.12 ppc64el 3.4.0-6+b2 [146 kB] Get:11 http://deb.debian.org/debian unstable/main ppc64el libfreetype6 ppc64el 2.14.3+dfsg-2 [534 kB] Get:12 http://deb.debian.org/debian unstable/main ppc64el libfribidi0 ppc64el 1.0.16-5+b1 [27.1 kB] Get:13 http://deb.debian.org/debian unstable/main ppc64el libfuse3-4 ppc64el 3.18.2-2 [106 kB] Get:14 http://deb.debian.org/debian unstable/main ppc64el libgdbm-compat4t64 ppc64el 1.26-1+b2 [52.4 kB] Get:15 http://deb.debian.org/debian unstable/main ppc64el libgdbm6t64 ppc64el 1.26-1+b2 [82.0 kB] Get:16 http://deb.debian.org/debian unstable/main ppc64el libgdk-pixbuf-2.0-0 ppc64el 2.44.7+dfsg-1 [103 kB] Get:17 http://deb.debian.org/debian unstable/main ppc64el libgdk-pixbuf2.0-common all 2.44.7+dfsg-1 [316 kB] Get:18 http://deb.debian.org/debian unstable/main ppc64el libglew2.3 ppc64el 2.3.1+dfsg2-5 [147 kB] Get:19 http://deb.debian.org/debian unstable/main ppc64el libglycin-2-0 ppc64el 2.1.5+ds-2 [1498 kB] Get:20 http://deb.debian.org/debian unstable/main ppc64el libgmp-dev ppc64el 2:6.3.0+dfsg-5+b2 [667 kB] Get:21 http://deb.debian.org/debian unstable/main ppc64el libgmp10 ppc64el 2:6.3.0+dfsg-5+b2 [580 kB] Get:22 http://deb.debian.org/debian unstable/main ppc64el libgmpxx4ldbl ppc64el 2:6.3.0+dfsg-5+b2 [328 kB] Get:23 http://deb.debian.org/debian unstable/main ppc64el libgnutls-dane0t64 ppc64el 3.8.13-1 [499 kB] Get:24 http://deb.debian.org/debian unstable/main ppc64el libgnutls28-dev ppc64el 3.8.13-1 [1543 kB] Get:25 http://deb.debian.org/debian unstable/main ppc64el libgnutls30t64 ppc64el 3.8.13-1 [1510 kB] Get:26 http://deb.debian.org/debian unstable/main ppc64el libgraphite2-3 ppc64el 1.3.15-2 [84.1 kB] Get:27 http://deb.debian.org/debian unstable/main ppc64el libgtk-3-0t64 ppc64el 3.24.52-1 [3001 kB] Get:28 http://deb.debian.org/debian unstable/main ppc64el libgtk-3-common all 3.24.52-1 [4929 kB] Get:29 http://deb.debian.org/debian unstable/main ppc64el libharfbuzz-subset0 ppc64el 12.3.2-2+b2 [606 kB] Get:30 http://deb.debian.org/debian unstable/main ppc64el libharfbuzz0b ppc64el 12.3.2-2+b2 [549 kB] Get:31 http://deb.debian.org/debian unstable/main ppc64el libhdf5-320 ppc64el 2.2.0+repack-4 [1813 kB] Get:32 http://deb.debian.org/debian unstable/main ppc64el libhdf5-cpp-320 ppc64el 2.2.0+repack-4 [131 kB] Get:33 http://deb.debian.org/debian unstable/main ppc64el libhdf5-dev ppc64el 2.2.0+repack-4 [4272 kB] Get:34 http://deb.debian.org/debian unstable/main ppc64el libhdf5-fortran-320 ppc64el 2.2.0+repack-4 [143 kB] Get:35 http://deb.debian.org/debian unstable/main ppc64el libhdf5-hl-320 ppc64el 2.2.0+repack-4 [86.3 kB] Get:36 http://deb.debian.org/debian unstable/main ppc64el libhdf5-hl-cpp-320 ppc64el 2.2.0+repack-4 [27.6 kB] Get:37 http://deb.debian.org/debian unstable/main ppc64el libhdf5-hl-fortran-320 ppc64el 2.2.0+repack-4 [50.4 kB] Get:38 http://deb.debian.org/debian unstable/main ppc64el libhwy1t64 ppc64el 1.3.0-5.1 [167 kB] Get:39 http://deb.debian.org/debian unstable/main ppc64el libhwloc-plugins ppc64el 2.14.0-2 [18.2 kB] Get:40 http://deb.debian.org/debian unstable/main ppc64el libhwloc15 ppc64el 2.14.0-2 [182 kB] Get:41 http://deb.debian.org/debian unstable/main ppc64el libicu78 ppc64el 78.3-2 [10.2 MB] Get:42 http://deb.debian.org/debian unstable/main ppc64el libisl23 ppc64el 0.28-1 [743 kB] Get:43 http://deb.debian.org/debian unstable/main ppc64el libjansson4 ppc64el 2.15.1-1 [70.9 kB] Get:44 http://deb.debian.org/debian unstable/main ppc64el libjbig-dev ppc64el 2.1-6.1+b3 [33.5 kB] Get:45 http://deb.debian.org/debian unstable/main ppc64el libjbig0 ppc64el 2.1-6.1+b3 [34.5 kB] Get:46 http://deb.debian.org/debian unstable/main ppc64el libjxl0.11 ppc64el 0.11.2-5.1 [1217 kB] Get:47 http://deb.debian.org/debian unstable/main ppc64el libjq1 ppc64el 1.8.2-1 [199 kB] Get:48 http://deb.debian.org/debian unstable/main ppc64el libgssapi-krb5-2 ppc64el 1.22.1-3 [151 kB] Get:49 http://deb.debian.org/debian unstable/main ppc64el libgssrpc4t64 ppc64el 1.22.1-3 [62.4 kB] Get:50 http://deb.debian.org/debian unstable/main ppc64el libk5crypto3 ppc64el 1.22.1-3 [88.9 kB] Get:51 http://deb.debian.org/debian unstable/main ppc64el libkadm5clnt-mit12 ppc64el 1.22.1-3 [42.5 kB] Get:52 http://deb.debian.org/debian unstable/main ppc64el libesmtp6 ppc64el 1.1.0-3.2+b2 [62.2 kB] Get:53 http://deb.debian.org/debian unstable/main ppc64el libevdev2 ppc64el 1.13.7+dfsg-1 [33.1 kB] Get:54 http://deb.debian.org/debian unstable/main ppc64el libevent-2.1-7t64 ppc64el 2.1.13-stable-1 [190 kB] Get:55 http://deb.debian.org/debian unstable/main ppc64el libevent-core-2.1-7t64 ppc64el 2.1.13-stable-1 [136 kB] Get:56 http://deb.debian.org/debian unstable/main ppc64el libevent-pthreads-2.1-7t64 ppc64el 2.1.13-stable-1 [54.1 kB] Get:57 http://deb.debian.org/debian unstable/main ppc64el libfabric1 ppc64el 2.1.0-1.1+b2 [634 kB] Get:58 http://deb.debian.org/debian unstable/main ppc64el libffi8 ppc64el 3.8.0-2 [30.8 kB] Get:59 http://deb.debian.org/debian unstable/main ppc64el libfontenc1 ppc64el 1:1.1.8-1+b3 [24.1 kB] Get:60 http://deb.debian.org/debian unstable/main ppc64el libgav1-2 ppc64el 0.20.0-2+b2 [382 kB] Get:61 http://deb.debian.org/debian unstable/main ppc64el libglu1-mesa ppc64el 9.0.2-1.1+b4 [201 kB] Get:62 http://deb.debian.org/debian unstable/main ppc64el libglu1-mesa-dev ppc64el 9.0.2-1.1+b4 [245 kB] Get:63 http://deb.debian.org/debian unstable/main ppc64el libgl-dev ppc64el 1.7.0-3+b1 [99.8 kB] Get:64 http://deb.debian.org/debian unstable/main ppc64el libgl1 ppc64el 1.7.0-3+b1 [92.2 kB] Get:65 http://deb.debian.org/debian unstable/main ppc64el libgles2 ppc64el 1.7.0-3+b1 [18.6 kB] Get:66 http://deb.debian.org/debian unstable/main ppc64el libglvnd0 ppc64el 1.7.0-3+b1 [48.0 kB] Get:67 http://deb.debian.org/debian unstable/main ppc64el libglx-dev ppc64el 1.7.0-3+b1 [15.0 kB] Get:68 http://deb.debian.org/debian unstable/main ppc64el libglx0 ppc64el 1.7.0-3+b1 [38.4 kB] Get:69 http://deb.debian.org/debian unstable/main ppc64el libgpg-error0 ppc64el 1.61-5 [97.9 kB] Get:70 http://deb.debian.org/debian unstable/main ppc64el libgudev-1.0-0 ppc64el 238-7+b2 [14.7 kB] Get:71 http://deb.debian.org/debian unstable/main ppc64el libice6 ppc64el 2:1.1.1-1+b2 [71.5 kB] Get:72 http://deb.debian.org/debian unstable/main ppc64el libidn2-0 ppc64el 2.3.8-5 [111 kB] Get:73 http://deb.debian.org/debian unstable/main ppc64el libidn2-dev ppc64el 2.3.8-5 [105 kB] Get:74 http://deb.debian.org/debian unstable/main ppc64el libimagequant0 ppc64el 4.4.1-1+b2 [296 kB] Get:75 http://deb.debian.org/debian unstable/main ppc64el libinput-bin ppc64el 1.31.3-1 [30.4 kB] Get:76 http://deb.debian.org/debian unstable/main ppc64el libinput10 ppc64el 1.31.3-1 [168 kB] Get:77 http://deb.debian.org/debian unstable/main ppc64el libjpeg-dev ppc64el 1:3.1.3-4 [78.9 kB] Get:78 http://deb.debian.org/debian unstable/main ppc64el libjpeg62-turbo ppc64el 1:3.1.3-4 [242 kB] Get:79 http://deb.debian.org/debian unstable/main ppc64el libjpeg62-turbo-dev ppc64el 1:3.1.3-4 [385 kB] Get:80 http://deb.debian.org/debian unstable/main ppc64el libhogweed6t64 ppc64el 3.10.2-1+b1 [338 kB] Get:81 http://deb.debian.org/debian unstable/main ppc64el libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:82 http://deb.debian.org/debian unstable/main ppc64el libibmad5 ppc64el 64.0-1 [44.8 kB] Get:83 http://deb.debian.org/debian unstable/main ppc64el libibumad3 ppc64el 64.0-1 [31.0 kB] Get:84 http://deb.debian.org/debian unstable/main ppc64el libibverbs1 ppc64el 64.0-1 [68.4 kB] Get:85 http://deb.debian.org/debian unstable/main ppc64el libhsa-runtime64-1 ppc64el 6.4.3+dfsg-5 [445 kB] Get:86 http://deb.debian.org/debian unstable/main ppc64el libjs-sphinxdoc all 9.1.0-7 [46.1 kB] Get:87 http://deb.debian.org/debian unstable/main ppc64el libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:88 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libgcc-16-dev ppc64el 16.2.0-1 [1488 kB] Get:89 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libgcc-s1 ppc64el 16.2.0-1 [51.9 kB] Get:90 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libgfortran5 ppc64el 16.2.0-1 [559 kB] Get:91 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libgomp1 ppc64el 16.2.0-1 [155 kB] Get:92 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libitm1 ppc64el 16.2.0-1 [29.1 kB] Get:93 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libglib2.0-0t64 ppc64el 2.89.4-2 [1621 kB] Get:94 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libgcrypt20 ppc64el 1.12.2-1 [923 kB] Get:95 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libheif-plugin-dav1d ppc64el 1.23.2-1 [20.5 kB] Get:96 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libheif-plugin-libde265 ppc64el 1.23.2-1 [18.0 kB] Get:97 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libheif1 ppc64el 1.23.2-1 [803 kB] Get:98 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libgbm1 ppc64el 26.1.6-1 [51.3 kB] Get:99 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libgl1-mesa-dri ppc64el 26.1.6-1 [44.8 kB] Get:100 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libglx-mesa0 ppc64el 26.1.6-1 [124 kB] Fetched 51.4 MB in 0s (137 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgl-dev_1.7.0-3+b1_ppc64el.deb' dpkg-name: info: moved 'libjpeg-dev_1%3a3.1.3-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnbi4o3sg/libjpeg-dev_3.1.3-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libesmtp6_1.1.0-3.2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libglib2.0-0t64_2.89.4-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfabric1_2.1.0-1.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgbm1_26.1.6-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libimagequant0_4.4.1-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgpg-error0_1.61-5_ppc64el.deb' dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgmp-dev_6.3.0+dfsg-5+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libevdev2_1.13.7+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhdf5-fortran-320_2.2.0+repack-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhdf5-hl-fortran-320_2.2.0+repack-4_ppc64el.deb' dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a3.1.3-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnbi4o3sg/libjpeg62-turbo-dev_3.1.3-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgnutls30t64_3.8.13-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libidn2-dev_2.3.8-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfribidi0_1.0.16-5+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgl1-mesa-dri_26.1.6-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libheif1_1.23.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhdf5-320_2.2.0+repack-4_ppc64el.deb' dpkg-name: info: moved 'libjpeg62-turbo_1%3a3.1.3-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnbi4o3sg/libjpeg62-turbo_3.1.3-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libglx-dev_1.7.0-3+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgssapi-krb5-2_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgdk-pixbuf-2.0-0_2.44.7+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfreetype6_2.14.3+dfsg-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libk5crypto3_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libexpat1-dev_2.8.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgssrpc4t64_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfftw3-dev_3.3.11-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libjq1_1.8.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgles2_1.7.0-3+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libjansson4_2.15.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libinput-bin_1.31.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfftw3-single3_3.3.11-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgdbm-compat4t64_1.26-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libitm1_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libharfbuzz-subset0_12.3.2-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libjs-jquery_3.7.1+dfsg+~3.5.33-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libidn2-0_2.3.8-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libjbig-dev_2.1-6.1+b3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libevent-pthreads-2.1-7t64_2.1.13-stable-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfile-stripnondeterminism-perl_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libglu1-mesa_9.0.2-1.1+b4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhdf5-cpp-320_2.2.0+repack-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhsa-runtime64-1_6.4.3+dfsg-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgdk-pixbuf2.0-common_2.44.7+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libflac14_1.5.0+ds-5+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libheif-plugin-libde265_1.23.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgav1-2_0.20.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhdf5-hl-cpp-320_2.2.0+repack-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfftw3-long3_3.3.11-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libevent-2.1-7t64_2.1.13-stable-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhwloc-plugins_2.14.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libglew2.3_2.3.1+dfsg2-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgudev-1.0-0_238-7+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libffi8_3.8.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgdbm6t64_1.26-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhwloc15_2.14.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgtk-3-common_3.24.52-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgnutls28-dev_3.8.13-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libinput10_1.31.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libglvnd0_1.7.0-3+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgcrypt20_1.12.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfuse3-4_3.18.2-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfftw3-double3_3.3.11-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhwy1t64_1.3.0-5.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfftw3-bin_3.3.11-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgcc-16-dev_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libexpat1_2.8.4-1_ppc64el.deb' dpkg-name: info: moved 'libfontenc1_1%3a1.1.8-1+b3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfontenc1_1.1.8-1+b3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libibverbs1_64.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libicu78_78.3-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libglx0_1.7.0-3+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgnutls-dane0t64_3.8.13-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libglu1-mesa-dev_9.0.2-1.1+b4_ppc64el.deb' dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgmp10_6.3.0+dfsg-5+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libglycin-2-0_2.1.5+ds-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgraphite2-3_1.3.15-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libglx-mesa0_26.1.6-1_ppc64el.deb' dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgmpxx4ldbl_6.3.0+dfsg-5+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhdf5-dev_2.2.0+repack-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libjs-sphinxdoc_9.1.0-7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhdf5-hl-320_2.2.0+repack-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libibmad5_64.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgl1_1.7.0-3+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libjxl0.11_0.11.2-5.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libkadm5clnt-mit12_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libjbig0_2.1-6.1+b3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libibumad3_64.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libisl23_0.28-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libhogweed6t64_3.10.2-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libheif-plugin-dav1d_1.23.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgtk-3-0t64_3.24.52-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libharfbuzz0b_12.3.2-2+b2_ppc64el.deb' dpkg-name: info: moved 'libice6_2%3a1.1.1-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnbi4o3sg/libice6_1.1.1-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libfontconfig1_2.17.1-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgomp1_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgfortran5_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libglut3.12_3.4.0-6+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libevent-core-2.1-7t64_2.1.13-stable-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbi4o3sg/libgcc-s1_16.2.0-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libmagic-mgc ppc64el 1:5.47-4 [345 kB] Get:2 http://deb.debian.org/debian unstable/main ppc64el libmagic1t64 ppc64el 1:5.47-4 [119 kB] Get:3 http://deb.debian.org/debian unstable/main ppc64el libkeyutils1 ppc64el 1.6.3-6+b2 [10.5 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el libkadm5srv-mit12 ppc64el 1.22.1-3 [59.0 kB] Get:5 http://deb.debian.org/debian unstable/main ppc64el libkdb5-10t64 ppc64el 1.22.1-3 [46.3 kB] Get:6 http://deb.debian.org/debian unstable/main ppc64el libkrb5-3 ppc64el 1.22.1-3 [371 kB] Get:7 http://deb.debian.org/debian unstable/main ppc64el libkrb5-dev ppc64el 1.22.1-3 [14.1 kB] Get:8 http://deb.debian.org/debian unstable/main ppc64el libkrb5support0 ppc64el 1.22.1-3 [33.5 kB] Get:9 http://deb.debian.org/debian unstable/main ppc64el libmp3lame0 ppc64el 4.0-1 [300 kB] Get:10 http://deb.debian.org/debian unstable/main ppc64el liblapack3 ppc64el 3.12.1-8 [2164 kB] Get:11 http://deb.debian.org/debian unstable/main ppc64el liblcms2-2 ppc64el 2.19.1-1 [184 kB] Get:12 http://deb.debian.org/debian unstable/main ppc64el liblerc-dev ppc64el 4.2.0+ds-1 [236 kB] Get:13 http://deb.debian.org/debian unstable/main ppc64el liblerc4 ppc64el 4.2.0+ds-1 [224 kB] Get:14 http://deb.debian.org/debian unstable/main ppc64el libopengl-dev ppc64el 1.7.0-3+b1 [4580 B] Get:15 http://deb.debian.org/debian unstable/main ppc64el libopengl0 ppc64el 1.7.0-3+b1 [33.1 kB] Get:16 http://deb.debian.org/debian unstable/main ppc64el liblzf1 ppc64el 3.6-4+b4 [10.5 kB] Get:17 http://deb.debian.org/debian unstable/main ppc64el libmd0 ppc64el 1.2.0-2 [41.9 kB] Get:18 http://deb.debian.org/debian unstable/main ppc64el libnl-3-200 ppc64el 3.12.0-2+b1 [66.1 kB] Get:19 http://deb.debian.org/debian unstable/main ppc64el libnl-route-3-200 ppc64el 3.12.0-2+b1 [203 kB] Get:20 http://deb.debian.org/debian unstable/main ppc64el libnotify4 ppc64el 0.8.8-1+b1 [28.8 kB] Get:21 http://deb.debian.org/debian unstable/main ppc64el libogg0 ppc64el 1.3.6-2+b1 [25.3 kB] Get:22 http://deb.debian.org/debian unstable/main ppc64el libonig5 ppc64el 6.9.10-1+b1 [205 kB] Get:23 http://deb.debian.org/debian unstable/main ppc64el libpciaccess0 ppc64el 0.19-2 [19.6 kB] Get:24 http://deb.debian.org/debian unstable/main ppc64el libpipeline1 ppc64el 1.5.8-3 [51.2 kB] Get:25 http://deb.debian.org/debian unstable/main ppc64el libpng16-16t64 ppc64el 1.6.58-1 [297 kB] Get:26 http://deb.debian.org/debian unstable/main ppc64el libpsl-dev ppc64el 0.23.3-1 [30.1 kB] Get:27 http://deb.debian.org/debian unstable/main ppc64el libpsl5t64 ppc64el 0.23.3-1 [62.5 kB] Get:28 http://deb.debian.org/debian unstable/main ppc64el libllvm21 ppc64el 1:21.1.8-10 [27.7 MB] Get:29 http://deb.debian.org/debian unstable/main ppc64el liblz4-1 ppc64el 1.10.0-10 [82.4 kB] Get:30 http://deb.debian.org/debian unstable/main ppc64el liblz4-dev ppc64el 1.10.0-10 [108 kB] Get:31 http://deb.debian.org/debian unstable/main ppc64el libmd4c0 ppc64el 0.5.3-1 [52.0 kB] Get:32 http://deb.debian.org/debian unstable/main ppc64el libmmdb2-0 ppc64el 2.0.22-1+b3 [395 kB] Get:33 http://deb.debian.org/debian unstable/main ppc64el libmmdb2-dev ppc64el 2.0.22-1+b3 [93.0 kB] Get:34 http://deb.debian.org/debian unstable/main ppc64el libmpc3 ppc64el 1.3.1-3 [72.2 kB] Get:35 http://deb.debian.org/debian unstable/main ppc64el libmpfr6 ppc64el 4.2.2-3 [729 kB] Get:36 http://deb.debian.org/debian unstable/main ppc64el libmpg123-0t64 ppc64el 1.33.7-1 [164 kB] Get:37 http://deb.debian.org/debian unstable/main ppc64el libmtdev1t64 ppc64el 1.1.7-1+b2 [25.3 kB] Get:38 http://deb.debian.org/debian unstable/main ppc64el libmunge2 ppc64el 0.5.18-1 [20.3 kB] Get:39 http://deb.debian.org/debian unstable/main ppc64el libncursesw6 ppc64el 6.6+20260608-2 [154 kB] Get:40 http://deb.debian.org/debian unstable/main ppc64el libnetcdf22 ppc64el 1:4.10.1-1+b1 [566 kB] Get:41 http://deb.debian.org/debian unstable/main ppc64el libnettle8t64 ppc64el 3.10.2-1+b1 [329 kB] Get:42 http://deb.debian.org/debian unstable/main ppc64el libnghttp2-14 ppc64el 1.70.0-1 [99.3 kB] Get:43 http://deb.debian.org/debian unstable/main ppc64el libnghttp2-dev ppc64el 1.70.0-1 [139 kB] Get:44 http://deb.debian.org/debian unstable/main ppc64el libnghttp3-9 ppc64el 1.17.0-1 [72.8 kB] Get:45 http://deb.debian.org/debian unstable/main ppc64el libnghttp3-dev ppc64el 1.17.0-1 [102 kB] Get:46 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-16 ppc64el 1.24.0-1 [152 kB] Get:47 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-crypto-gnutls8 ppc64el 1.24.0-1 [24.4 kB] Get:48 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-crypto-ossl-dev ppc64el 1.24.0-1 [29.1 kB] Get:49 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-crypto-ossl0 ppc64el 1.24.0-1 [27.1 kB] Get:50 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-dev ppc64el 1.24.0-1 [217 kB] Get:51 http://deb.debian.org/debian unstable/main ppc64el libnuma1 ppc64el 2.0.19-1+b2 [24.8 kB] Get:52 http://deb.debian.org/debian unstable/main ppc64el libopenjp2-7 ppc64el 2.5.4-1.1 [224 kB] Get:53 http://deb.debian.org/debian unstable/main ppc64el libldap-dev ppc64el 2.6.14+dfsg-2 [331 kB] Get:54 http://deb.debian.org/debian unstable/main ppc64el libldap2 ppc64el 2.6.14+dfsg-2 [203 kB] Get:55 http://deb.debian.org/debian unstable/main ppc64el libopus0 ppc64el 1.6.1-1+b1 [3482 kB] Get:56 http://deb.debian.org/debian unstable/main ppc64el libp11-kit-dev ppc64el 0.26.5-1 [226 kB] Get:57 http://deb.debian.org/debian unstable/main ppc64el libp11-kit0 ppc64el 0.26.5-1 [460 kB] Get:58 http://deb.debian.org/debian unstable/main ppc64el libpam-modules ppc64el 1.7.0-8 [195 kB] Get:59 http://deb.debian.org/debian unstable/main ppc64el libpam-modules-bin ppc64el 1.7.0-8 [49.7 kB] Get:60 http://deb.debian.org/debian unstable/main ppc64el libpam-runtime all 1.7.0-8 [246 kB] Get:61 http://deb.debian.org/debian unstable/main ppc64el libpam0g ppc64el 1.7.0-8 [71.4 kB] Get:62 http://deb.debian.org/debian unstable/main ppc64el libpango-1.0-0 ppc64el 1.58.0-1 [239 kB] Get:63 http://deb.debian.org/debian unstable/main ppc64el libpangocairo-1.0-0 ppc64el 1.58.0-1 [36.1 kB] Get:64 http://deb.debian.org/debian unstable/main ppc64el libpangoft2-1.0-0 ppc64el 1.58.0-1 [57.6 kB] Get:65 http://deb.debian.org/debian unstable/main ppc64el libpcre2-16-0 ppc64el 10.48-2 [280 kB] Get:66 http://deb.debian.org/debian unstable/main ppc64el libpcre2-32-0 ppc64el 10.48-2 [270 kB] Get:67 http://deb.debian.org/debian unstable/main ppc64el libpcre2-8-0 ppc64el 10.48-2 [296 kB] Get:68 http://deb.debian.org/debian unstable/main ppc64el libperl5.42 ppc64el 5.42.3-1 [4258 kB] Get:69 http://deb.debian.org/debian unstable/main ppc64el libpixman-1-0 ppc64el 0.46.4-1+b2 [195 kB] Get:70 http://deb.debian.org/debian unstable/main ppc64el libpkgconf7 ppc64el 2.5.1-4 [51.5 kB] Get:71 http://deb.debian.org/debian unstable/main ppc64el libpopt0 ppc64el 1.19+dfsg-2+b2 [47.2 kB] Get:72 http://deb.debian.org/debian unstable/main ppc64el libproc2-1 ppc64el 2:4.0.7-1 [74.0 kB] Get:73 http://deb.debian.org/debian unstable/main ppc64el libpulse0 ppc64el 17.0+dfsg1-3 [265 kB] Get:74 http://deb.debian.org/debian unstable/main ppc64el libpython3-all-dev ppc64el 3.14.7-3 [1012 B] Get:75 http://deb.debian.org/debian unstable/main ppc64el libpython3-dev ppc64el 3.14.7-3 [8488 B] Get:76 http://deb.debian.org/debian unstable/main ppc64el libpython3-stdlib ppc64el 3.14.7-3 [8252 B] Get:77 http://deb.debian.org/debian unstable/main ppc64el libqhull-r8.0 ppc64el 2020.2-9 [252 kB] Get:78 http://deb.debian.org/debian unstable/main ppc64el libqt5core5t64 ppc64el 5.15.19+dfsg-4 [2002 kB] Get:79 http://deb.debian.org/debian unstable/main ppc64el libqt5dbus5t64 ppc64el 5.15.19+dfsg-4 [223 kB] Get:80 http://deb.debian.org/debian unstable/main ppc64el libqt5gui5t64 ppc64el 5.15.19+dfsg-4 [3760 kB] Get:81 http://deb.debian.org/debian unstable/main ppc64el libqt5network5t64 ppc64el 5.15.19+dfsg-4 [728 kB] Get:82 http://deb.debian.org/debian unstable/main ppc64el libqt5opengl5t64 ppc64el 5.15.19+dfsg-4 [154 kB] Get:83 http://deb.debian.org/debian unstable/main ppc64el libqt5printsupport5t64 ppc64el 5.15.19+dfsg-4 [209 kB] Get:84 http://deb.debian.org/debian unstable/main ppc64el libqt5sql5t64 ppc64el 5.15.19+dfsg-4 [128 kB] Get:85 http://deb.debian.org/debian unstable/main ppc64el libqt5test5t64 ppc64el 5.15.19+dfsg-4 [148 kB] Get:86 http://deb.debian.org/debian unstable/main ppc64el libqt5widgets5t64 ppc64el 5.15.19+dfsg-4 [2580 kB] Get:87 http://deb.debian.org/debian unstable/main ppc64el libqt5xml5t64 ppc64el 5.15.19+dfsg-4 [128 kB] Get:88 http://deb.debian.org/debian unstable/main ppc64el libqt5designer5 ppc64el 5.15.19-2 [2817 kB] Get:89 http://deb.debian.org/debian unstable/main ppc64el libqt5help5 ppc64el 5.15.19-2 [162 kB] Get:90 http://deb.debian.org/debian unstable/main ppc64el liblzma-dev ppc64el 5.8.3-1 [378 kB] Get:91 http://deb.debian.org/debian unstable/main ppc64el liblzma5 ppc64el 5.8.3-1 [339 kB] Get:92 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el liblsan0 ppc64el 16.2.0-1 [1273 kB] Get:93 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libopenmpi40 ppc64el 5.0.10-5 [1982 kB] Get:94 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libpmix2t64 ppc64el 6.1.1~rc2-4 [733 kB] Get:95 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libpython3.14 ppc64el 3.14.7-1 [2437 kB] Get:96 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libpython3.14-dev ppc64el 3.14.7-1 [5790 kB] Get:97 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libpython3.14-minimal ppc64el 3.14.7-1 [895 kB] Get:98 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libpython3.14-stdlib ppc64el 3.14.7-1 [2337 kB] Get:99 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libpam-systemd ppc64el 262~rc1-2 [343 kB] Get:100 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libmount1 ppc64el 2.42.2-4 [252 kB] Fetched 78.2 MB in 1s (151 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpsl5t64_0.23.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpango-1.0-0_1.58.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpython3.14-dev_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpcre2-32-0_10.48-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpython3-dev_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/liblerc4_4.2.0+ds-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpython3-all-dev_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libnotify4_0.8.8-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpkgconf7_2.5.1-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpixman-1-0_0.46.4-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libqt5test5t64_5.15.19+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libnettle8t64_3.10.2-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libperl5.42_5.42.3-1_ppc64el.deb' dpkg-name: warning: 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'/srv/rebuilderd/tmp/tmp_4r2ly8v/libqt5widgets5t64_5.15.19+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libmtdev1t64_1.1.7-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpython3-stdlib_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libngtcp2-dev_1.24.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpopt0_1.19+dfsg-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpam-runtime_1.7.0-8_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpam-systemd_262~rc1-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpng16-16t64_1.6.58-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libngtcp2-crypto-ossl-dev_1.24.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/liblz4-1_1.10.0-10_ppc64el.deb' dpkg-name: info: moved 'libmagic-mgc_1%3a5.47-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp_4r2ly8v/libmagic-mgc_5.47-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpython3.14_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/liblzma5_5.8.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/liblerc-dev_4.2.0+ds-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libmount1_2.42.2-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/liblsan0_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libp11-kit-dev_0.26.5-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libmunge2_0.5.18-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpam-modules-bin_1.7.0-8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/liblz4-dev_1.10.0-10_ppc64el.deb' dpkg-name: warning: 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'/srv/rebuilderd/tmp/tmp_4r2ly8v/libpsl-dev_0.23.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libkrb5-dev_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libqt5dbus5t64_5.15.19+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpangoft2-1.0-0_1.58.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpangocairo-1.0-0_1.58.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libmmdb2-0_2.0.22-1+b3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libngtcp2-16_1.24.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libonig5_6.9.10-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libqt5printsupport5t64_5.15.19+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libqt5opengl5t64_5.15.19+dfsg-4_ppc64el.deb' dpkg-name: 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'/srv/rebuilderd/tmp/tmp_4r2ly8v/libqt5core5t64_5.15.19+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpmix2t64_6.1.1~rc2-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/liblzma-dev_5.8.3-1_ppc64el.deb' dpkg-name: info: moved 'libproc2-1_2%3a4.0.7-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp_4r2ly8v/libproc2-1_4.0.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libqt5sql5t64_5.15.19+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libmpg123-0t64_1.33.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libkrb5support0_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libnl-route-3-200_3.12.0-2+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libmpc3_1.3.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libmpfr6_4.2.2-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libpcre2-8-0_10.48-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libldap2_2.6.14+dfsg-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libkadm5srv-mit12_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libqt5network5t64_5.15.19+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libopenmpi40_5.0.10-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libqt5designer5_5.15.19-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libnghttp3-9_1.17.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libnuma1_2.0.19-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4r2ly8v/libkeyutils1_1.6.3-6+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-11 [63.3 kB] Get:2 http://deb.debian.org/debian unstable/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-11 [19.1 kB] Get:3 http://deb.debian.org/debian unstable/main ppc64el libsz2 ppc64el 1.1.7-1 [21.4 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el librsvg2-2 ppc64el 2.62.1+dfsg-1 [1914 kB] Get:5 http://deb.debian.org/debian unstable/main ppc64el libselinux1 ppc64el 3.11-2 [97.2 kB] Get:6 http://deb.debian.org/debian unstable/main ppc64el libsm6 ppc64el 2:1.2.6-1+b2 [38.6 kB] Get:7 http://deb.debian.org/debian unstable/main ppc64el libsndfile1 ppc64el 1.2.2-4+b1 [231 kB] Get:8 http://deb.debian.org/debian unstable/main ppc64el libssh2-1-dev ppc64el 1.11.1-6 [409 kB] Get:9 http://deb.debian.org/debian unstable/main ppc64el libssh2-1t64 ppc64el 1.11.1-6 [256 kB] Get:10 http://deb.debian.org/debian unstable/main ppc64el libtasn1-6 ppc64el 4.21.0-2+b1 [53.8 kB] Get:11 http://deb.debian.org/debian unstable/main ppc64el libtasn1-6-dev ppc64el 4.21.0-2+b1 [104 kB] Get:12 http://deb.debian.org/debian unstable/main ppc64el libthai-data all 0.1.30-3 [172 kB] Get:13 http://deb.debian.org/debian unstable/main ppc64el libthai0 ppc64el 0.1.30-3 [53.6 kB] Get:14 http://deb.debian.org/debian unstable/main ppc64el libtool all 2.6.2-2 [553 kB] Get:15 http://deb.debian.org/debian unstable/main ppc64el libunistring-dev ppc64el 1.4.2-1 [654 kB] Get:16 http://deb.debian.org/debian unstable/main ppc64el libunistring5 ppc64el 1.4.2-1 [496 kB] Get:17 http://deb.debian.org/debian unstable/main ppc64el libvorbis0a ppc64el 1.3.7-3+b2 [101 kB] Get:18 http://deb.debian.org/debian unstable/main ppc64el libvorbisenc2 ppc64el 1.3.7-3+b2 [77.3 kB] Get:19 http://deb.debian.org/debian unstable/main ppc64el libsharpyuv-dev ppc64el 1.5.0-0.1+b2 [118 kB] Get:20 http://deb.debian.org/debian unstable/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1+b2 [114 kB] Get:21 http://deb.debian.org/debian unstable/main ppc64el libwebp-dev ppc64el 1.5.0-0.1+b2 [453 kB] Get:22 http://deb.debian.org/debian unstable/main ppc64el libwebp7 ppc64el 1.5.0-0.1+b2 [312 kB] Get:23 http://deb.debian.org/debian unstable/main ppc64el libwebpdecoder3 ppc64el 1.5.0-0.1+b2 [202 kB] Get:24 http://deb.debian.org/debian unstable/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1+b2 [114 kB] Get:25 http://deb.debian.org/debian unstable/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1+b2 [127 kB] Get:26 http://deb.debian.org/debian unstable/main ppc64el libx11-6 ppc64el 2:1.8.13-1 [863 kB] Get:27 http://deb.debian.org/debian unstable/main ppc64el libx11-data all 2:1.8.13-1 [346 kB] Get:28 http://deb.debian.org/debian unstable/main ppc64el libx11-dev ppc64el 2:1.8.13-1 [953 kB] Get:29 http://deb.debian.org/debian unstable/main ppc64el libx11-xcb1 ppc64el 2:1.8.13-1 [250 kB] Get:30 http://deb.debian.org/debian unstable/main ppc64el libxau-dev ppc64el 1:1.0.11-1+b2 [24.7 kB] Get:31 http://deb.debian.org/debian unstable/main ppc64el libxau6 ppc64el 1:1.0.11-1+b2 [21.4 kB] Get:32 http://deb.debian.org/debian unstable/main ppc64el libxcb-dri3-0 ppc64el 1.17.0-2+b2 [107 kB] Get:33 http://deb.debian.org/debian unstable/main ppc64el libxcb-glx0 ppc64el 1.17.0-2+b2 [124 kB] Get:34 http://deb.debian.org/debian unstable/main ppc64el libxcb-present0 ppc64el 1.17.0-2+b2 [106 kB] Get:35 http://deb.debian.org/debian unstable/main ppc64el libxcb-randr0 ppc64el 1.17.0-2+b2 [118 kB] Get:36 http://deb.debian.org/debian unstable/main ppc64el libxcb-render0 ppc64el 1.17.0-2+b2 [116 kB] Get:37 http://deb.debian.org/debian unstable/main ppc64el libxcb-shape0 ppc64el 1.17.0-2+b2 [106 kB] Get:38 http://deb.debian.org/debian unstable/main ppc64el libxcb-shm0 ppc64el 1.17.0-2+b2 [106 kB] Get:39 http://deb.debian.org/debian unstable/main ppc64el libxcb-sync1 ppc64el 1.17.0-2+b2 [109 kB] Get:40 http://deb.debian.org/debian unstable/main ppc64el libxcb-xfixes0 ppc64el 1.17.0-2+b2 [110 kB] Get:41 http://deb.debian.org/debian unstable/main ppc64el libxcb-xinerama0 ppc64el 1.17.0-2+b2 [105 kB] Get:42 http://deb.debian.org/debian unstable/main ppc64el libxcb-xinput0 ppc64el 1.17.0-2+b2 [132 kB] Get:43 http://deb.debian.org/debian unstable/main ppc64el libxcb-xkb1 ppc64el 1.17.0-2+b2 [133 kB] Get:44 http://deb.debian.org/debian unstable/main ppc64el libxcb1 ppc64el 1.17.0-2+b2 [148 kB] Get:45 http://deb.debian.org/debian unstable/main ppc64el libxcb1-dev ppc64el 1.17.0-2+b2 [186 kB] Get:46 http://deb.debian.org/debian unstable/main ppc64el libxcomposite1 ppc64el 1:0.4.6-1+b2 [17.0 kB] Get:47 http://deb.debian.org/debian unstable/main ppc64el libxcursor1 ppc64el 1:1.2.3-1+b2 [44.0 kB] Get:48 http://deb.debian.org/debian unstable/main ppc64el libxdamage1 ppc64el 1:1.1.7-1+b1 [16.6 kB] Get:49 http://deb.debian.org/debian unstable/main ppc64el libsensors-config all 1:3.6.2-2 [16.2 kB] Get:50 http://deb.debian.org/debian unstable/main ppc64el libsensors5 ppc64el 1:3.6.2-2+b2 [40.7 kB] Get:51 http://deb.debian.org/debian unstable/main ppc64el libtinfo6 ppc64el 6.6+20260608-2 [362 kB] Get:52 http://deb.debian.org/debian unstable/main ppc64el libssl-dev ppc64el 3.6.4-1 [3217 kB] Get:53 http://deb.debian.org/debian unstable/main ppc64el libssl3t64 ppc64el 3.6.4-1 [2575 kB] Get:54 http://deb.debian.org/debian unstable/main ppc64el libraqm0 ppc64el 0.10.5-1 [15.5 kB] Get:55 http://deb.debian.org/debian unstable/main ppc64el librdmacm1t64 ppc64el 64.0-1 [76.9 kB] Get:56 http://deb.debian.org/debian unstable/main ppc64el libreadline8t64 ppc64el 8.3-4 [192 kB] Get:57 http://deb.debian.org/debian unstable/main ppc64el librtmp-dev ppc64el 2.6-1 [75.3 kB] Get:58 http://deb.debian.org/debian unstable/main ppc64el librtmp1 ppc64el 2.6-1 [65.0 kB] Get:59 http://deb.debian.org/debian unstable/main ppc64el librav1e0.8 ppc64el 0.8.1-11 [727 kB] Get:60 http://deb.debian.org/debian unstable/main ppc64el libsqlite3-0 ppc64el 3.53.4-2 [1025 kB] Get:61 http://deb.debian.org/debian unstable/main ppc64el libssm-dev ppc64el 1.4.0-2+b4 [15.2 kB] Get:62 http://deb.debian.org/debian unstable/main ppc64el libssm2 ppc64el 1.4.0-2+b4 [92.3 kB] Get:63 http://deb.debian.org/debian unstable/main ppc64el libsvtav1enc4 ppc64el 4.1.0+dfsg-1 [1313 kB] Get:64 http://deb.debian.org/debian unstable/main ppc64el libtcl8.6 ppc64el 8.6.18+dfsg-1 [1106 kB] Get:65 http://deb.debian.org/debian unstable/main ppc64el libtiff-dev ppc64el 4.7.2-1 [548 kB] Get:66 http://deb.debian.org/debian unstable/main ppc64el libtiff6 ppc64el 4.7.2-1 [392 kB] Get:67 http://deb.debian.org/debian unstable/main ppc64el libtiffxx6 ppc64el 4.7.2-1 [191 kB] Get:68 http://deb.debian.org/debian unstable/main ppc64el libtk8.6 ppc64el 8.6.18-1 [841 kB] Get:69 http://deb.debian.org/debian unstable/main ppc64el libuchardet0 ppc64el 0.0.8-2+b2 [71.0 kB] Get:70 http://deb.debian.org/debian unstable/main ppc64el libucx0 ppc64el 1.22.0-1 [936 kB] Get:71 http://deb.debian.org/debian unstable/main ppc64el libunbound8 ppc64el 1.26.0-2 [659 kB] Get:72 http://deb.debian.org/debian unstable/main ppc64el libvulkan1 ppc64el 1.4.357.0-1 [160 kB] Get:73 http://deb.debian.org/debian unstable/main ppc64el libwayland-client0 ppc64el 1.26.0-1 [32.3 kB] Get:74 http://deb.debian.org/debian unstable/main ppc64el libwayland-cursor0 ppc64el 1.26.0-1 [12.9 kB] Get:75 http://deb.debian.org/debian unstable/main ppc64el libwayland-egl1 ppc64el 1.26.0-1 [5844 B] Get:76 http://deb.debian.org/debian unstable/main ppc64el libxcb-util1 ppc64el 0.4.1-1+b2 [24.0 kB] Get:77 http://deb.debian.org/debian unstable/main ppc64el libxcb-image0 ppc64el 0.4.0-2+b3 [23.1 kB] Get:78 http://deb.debian.org/debian unstable/main ppc64el libxcb-keysyms1 ppc64el 0.4.1-1+b2 [17.5 kB] Get:79 http://deb.debian.org/debian unstable/main ppc64el libxcb-render-util0 ppc64el 0.3.10-1+b2 [19.4 kB] Get:80 http://deb.debian.org/debian unstable/main ppc64el libxcb-icccm4 ppc64el 0.4.2-1+b2 [28.0 kB] Get:81 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libsframe3 ppc64el 2.47-2 [87.1 kB] Get:82 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libquadmath0 ppc64el 16.2.0-1 [157 kB] Get:83 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libstdc++-16-dev ppc64el 16.2.0-1 [2940 kB] Get:84 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libstdc++6 ppc64el 16.2.0-1 [889 kB] Get:85 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libtsan2 ppc64el 16.2.0-1 [2510 kB] Get:86 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libubsan1 ppc64el 16.2.0-1 [1195 kB] Get:87 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libsdl3-0 ppc64el 3.4.14+ds-2 [1069 kB] Get:88 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libseccomp2 ppc64el 2.6.1-1 [56.5 kB] Get:89 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libwacom-common all 2.18.0-1 [117 kB] Get:90 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libwacom9 ppc64el 2.18.0-1 [31.2 kB] Get:91 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libsdl2-2.0-0 ppc64el 2.32.70+ds-2 [126 kB] Get:92 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libsystemd-shared ppc64el 262~rc1-2 [2702 kB] Get:93 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libsystemd0 ppc64el 262~rc1-2 [502 kB] Get:94 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libudev1 ppc64el 262~rc1-2 [147 kB] Get:95 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libucc1 ppc64el 1.8.0-2 [388 kB] Get:96 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libsmartcols1 ppc64el 2.42.2-4 [173 kB] Get:97 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libuuid1 ppc64el 2.42.2-4 [35.1 kB] Get:98 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libwxbase3.2-1t64 ppc64el 3.2.11+dfsg-1 [1040 kB] Get:99 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libwxgtk-gl3.2-1t64 ppc64el 3.2.11+dfsg-1 [90.7 kB] Get:100 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libwxgtk3.2-1t64 ppc64el 3.2.11+dfsg-1 [4773 kB] Fetched 44.9 MB in 0s (131 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libunistring-dev_1.4.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb1-dev_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb1_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/librtmp1_2.6-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-icccm4_0.4.2-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libreadline8t64_8.3-4_ppc64el.deb' dpkg-name: info: moved 'libx11-data_2%3a1.8.13-1_all.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libx11-data_1.8.13-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-xfixes0_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libvorbis0a_1.3.7-3+b2_ppc64el.deb' dpkg-name: info: moved 'libsm6_2%3a1.2.6-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsm6_1.2.6-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwacom9_2.18.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libselinux1_3.11-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libuchardet0_0.0.8-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/librav1e0.8_0.8.1-11_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libssl-dev_3.6.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libunistring5_1.4.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwebp-dev_1.5.0-0.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libssl3t64_3.6.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libtiff6_4.7.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwacom-common_2.18.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libstdc++-16-dev_16.2.0-1_ppc64el.deb' dpkg-name: info: moved 'libsensors-config_1%3a3.6.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsensors-config_3.6.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsndfile1_1.2.2-4+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-shape0_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libtool_2.6.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libvulkan1_1.4.357.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-render-util0_0.3.10-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libtsan2_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libtcl8.6_8.6.18+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libssm2_1.4.0-2+b4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwebpdecoder3_1.5.0-0.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libraqm0_0.10.5-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libtiff-dev_4.7.2-1_ppc64el.deb' dpkg-name: info: moved 'libsensors5_1%3a3.6.2-2+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsensors5_3.6.2-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-keysyms1_0.4.1-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libquadmath0_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libtinfo6_6.6+20260608-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libtiffxx6_4.7.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libstdc++6_16.2.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libuuid1_2.42.2-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwxbase3.2-1t64_3.2.11+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsharpyuv0_1.5.0-0.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsasl2-2_2.1.28+dfsg1-11_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-present0_1.17.0-2+b2_ppc64el.deb' dpkg-name: info: moved 'libx11-6_2%3a1.8.13-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libx11-6_1.8.13-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-glx0_1.17.0-2+b2_ppc64el.deb' dpkg-name: info: moved 'libxdamage1_1%3a1.1.7-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxdamage1_1.1.7-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwxgtk-gl3.2-1t64_3.2.11+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-render0_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwxgtk3.2-1t64_3.2.11+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libseccomp2_2.6.1-1_ppc64el.deb' dpkg-name: info: moved 'libxau6_1%3a1.0.11-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxau6_1.0.11-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwebp7_1.5.0-0.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsharpyuv-dev_1.5.0-0.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libvorbisenc2_1.3.7-3+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libssh2-1t64_1.11.1-6_ppc64el.deb' dpkg-name: info: moved 'libx11-dev_2%3a1.8.13-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libx11-dev_1.8.13-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/librsvg2-2_2.62.1+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libunbound8_1.26.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwayland-egl1_1.26.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/librdmacm1t64_64.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libtasn1-6_4.21.0-2+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwayland-cursor0_1.26.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsasl2-modules-db_2.1.28+dfsg1-11_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsvtav1enc4_4.1.0+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libtk8.6_8.6.18-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwebpdemux2_1.5.0-0.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libssm-dev_1.4.0-2+b4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-xinerama0_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsz2_1.1.7-1_ppc64el.deb' dpkg-name: info: moved 'libxcomposite1_1%3a0.4.6-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcomposite1_0.4.6-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libucx0_1.22.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libudev1_262~rc1-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsqlite3-0_3.53.4-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-randr0_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libthai-data_0.1.30-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/librtmp-dev_2.6-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-dri3-0_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-xkb1_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwebpmux3_1.5.0-0.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libucc1_1.8.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-xinput0_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsdl3-0_3.4.14+ds-2_ppc64el.deb' dpkg-name: info: moved 'libxau-dev_1%3a1.0.11-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxau-dev_1.0.11-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-shm0_1.17.0-2+b2_ppc64el.deb' dpkg-name: info: moved 'libx11-xcb1_2%3a1.8.13-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libx11-xcb1_1.8.13-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsmartcols1_2.42.2-4_ppc64el.deb' dpkg-name: info: moved 'libxcursor1_1%3a1.2.3-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcursor1_1.2.3-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libtasn1-6-dev_4.21.0-2+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-image0_0.4.0-2+b3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsystemd0_262~rc1-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsdl2-2.0-0_2.32.70+ds-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsframe3_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libwayland-client0_1.26.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-util1_0.4.1-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libthai0_0.1.30-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libsystemd-shared_262~rc1-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libssh2-1-dev_1.11.1-6_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libxcb-sync1_1.17.0-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjp2wu5t/libubsan1_16.2.0-1_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:2 http://deb.debian.org/debian unstable/main ppc64el pybuild-plugin-pyproject all 7.20260623 [6996 B] Get:3 http://deb.debian.org/debian unstable/main ppc64el python3-flexcache all 0.3-3 [13.7 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el python3-flexparser all 0.4-2 [43.1 kB] Get:5 http://deb.debian.org/debian unstable/main ppc64el python3-freetype all 2.5.1-3 [88.9 kB] Get:6 http://deb.debian.org/debian unstable/main ppc64el python3-h5py all 3.16.0-6 [15.0 kB] Get:7 http://deb.debian.org/debian unstable/main ppc64el python3-h5py-serial ppc64el 3.16.0-6 [964 kB] Get:8 http://deb.debian.org/debian unstable/main ppc64el python3-hatchling all 1.30.1-2 [47.9 kB] Get:9 http://deb.debian.org/debian unstable/main ppc64el python3-jaraco.context all 6.0.1-2 [8184 B] Get:10 http://deb.debian.org/debian unstable/main ppc64el python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:11 http://deb.debian.org/debian unstable/main ppc64el libxdmcp-dev ppc64el 1:1.1.5-2+b1 [45.0 kB] Get:12 http://deb.debian.org/debian unstable/main ppc64el libxdmcp6 ppc64el 1:1.1.5-2+b1 [29.0 kB] Get:13 http://deb.debian.org/debian unstable/main ppc64el libxext6 ppc64el 2:1.3.4-1+b4 [51.5 kB] Get:14 http://deb.debian.org/debian unstable/main ppc64el libxfixes3 ppc64el 1:6.0.0-2+b5 [20.7 kB] Get:15 http://deb.debian.org/debian unstable/main ppc64el libxi6 ppc64el 2:1.8.3-1 [87.0 kB] Get:16 http://deb.debian.org/debian unstable/main ppc64el libxinerama1 ppc64el 2:1.1.4-3+b5 [16.2 kB] Get:17 http://deb.debian.org/debian unstable/main ppc64el libxkbcommon-x11-0 ppc64el 1.13.1-1 [22.0 kB] Get:18 http://deb.debian.org/debian unstable/main ppc64el libxkbcommon0 ppc64el 1.13.1-1 [154 kB] Get:19 http://deb.debian.org/debian unstable/main ppc64el libxnvctrl0 ppc64el 535.171.04-1+b3 [14.6 kB] Get:20 http://deb.debian.org/debian unstable/main ppc64el libxrandr2 ppc64el 2:1.5.4-1+b4 [37.2 kB] Get:21 http://deb.debian.org/debian unstable/main ppc64el libxrender1 ppc64el 1:0.9.12-1+b2 [29.4 kB] Get:22 http://deb.debian.org/debian unstable/main ppc64el libxres1 ppc64el 2:1.2.1-2 [18.1 kB] Get:23 http://deb.debian.org/debian unstable/main ppc64el libxshmfence1 ppc64el 1.3.3-1+b2 [11.4 kB] Get:24 http://deb.debian.org/debian unstable/main ppc64el libxslt1.1 ppc64el 1.1.45-0.1 [167 kB] Get:25 http://deb.debian.org/debian unstable/main ppc64el libxss1 ppc64el 1:1.2.3-1+b4 [17.1 kB] Get:26 http://deb.debian.org/debian unstable/main ppc64el libxtst6 ppc64el 2:1.2.5-1+b2 [27.5 kB] Get:27 http://deb.debian.org/debian unstable/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-2+b1 [20.5 kB] Get:28 http://deb.debian.org/debian unstable/main ppc64el libyaml-0-2 ppc64el 0.2.5-2+b1 [59.2 kB] Get:29 http://deb.debian.org/debian unstable/main ppc64el libzstd-dev ppc64el 1.5.7+dfsg-4 [399 kB] Get:30 http://deb.debian.org/debian unstable/main ppc64el libzstd1 ppc64el 1.5.7+dfsg-4 [327 kB] Get:31 http://deb.debian.org/debian unstable/main ppc64el linux-libc-dev all 7.1.12-1 [2062 kB] Get:32 http://deb.debian.org/debian unstable/main ppc64el m4 ppc64el 1.4.21-1 [340 kB] Get:33 http://deb.debian.org/debian unstable/main ppc64el make ppc64el 4.4.1-3 [470 kB] Get:34 http://deb.debian.org/debian unstable/main ppc64el man-db ppc64el 2.13.1-1 [1481 kB] Get:35 http://deb.debian.org/debian unstable/main ppc64el python-matplotlib-data all 3.10.9+dfsg1-1 [2734 kB] Get:36 http://deb.debian.org/debian unstable/main ppc64el mawk ppc64el 1.3.4.20260302-1 [145 kB] Get:37 http://deb.debian.org/debian unstable/main ppc64el media-types all 14.0.0 [30.8 kB] Get:38 http://deb.debian.org/debian unstable/main ppc64el python3-more-itertools all 11.1.0-2 [74.5 kB] Get:39 http://deb.debian.org/debian unstable/main ppc64el python3-mpmath all 1.4.1-3 [448 kB] Get:40 http://deb.debian.org/debian unstable/main ppc64el python3-natsort all 8.4.0-2 [39.0 kB] Get:41 http://deb.debian.org/debian unstable/main ppc64el ncurses-base all 6.6+20260608-2 [276 kB] Get:42 http://deb.debian.org/debian unstable/main ppc64el ncurses-bin ppc64el 6.6+20260608-2 [450 kB] Get:43 http://deb.debian.org/debian unstable/main ppc64el netbase all 6.6 [10.3 kB] Get:44 http://deb.debian.org/debian unstable/main ppc64el nettle-dev ppc64el 3.10.2-1+b1 [1353 kB] Get:45 http://deb.debian.org/debian unstable/main ppc64el ocl-icd-libopencl1 ppc64el 2.3.4-1+b1 [48.4 kB] Get:46 http://deb.debian.org/debian unstable/main ppc64el openssl ppc64el 3.6.4-1 [1539 kB] Get:47 http://deb.debian.org/debian unstable/main ppc64el openssl-provider-legacy ppc64el 3.6.4-1 [328 kB] Get:48 http://deb.debian.org/debian unstable/main ppc64el patch ppc64el 2.8-2 [141 kB] Get:49 http://deb.debian.org/debian unstable/main ppc64el pci.ids all 0.0~2026.07.21-1 [285 kB] Get:50 http://deb.debian.org/debian unstable/main ppc64el perl ppc64el 5.42.3-1 [266 kB] Get:51 http://deb.debian.org/debian unstable/main ppc64el perl-base ppc64el 5.42.3-1 [1867 kB] Get:52 http://deb.debian.org/debian unstable/main ppc64el perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:53 http://deb.debian.org/debian unstable/main ppc64el pkg-config ppc64el 2.5.1-4 [18.1 kB] Get:54 http://deb.debian.org/debian unstable/main ppc64el pkgconf ppc64el 2.5.1-4 [33.6 kB] Get:55 http://deb.debian.org/debian unstable/main ppc64el pkgconf-bin ppc64el 2.5.1-4 [36.3 kB] Get:56 http://deb.debian.org/debian unstable/main ppc64el po-debconf all 1.0.22 [216 kB] Get:57 http://deb.debian.org/debian unstable/main ppc64el procps ppc64el 2:4.0.7-1 [1004 kB] Get:58 http://deb.debian.org/debian unstable/main ppc64el pymol-data all 3.1.0+dfsg-1 [1430 kB] Get:59 http://deb.debian.org/debian unstable/main ppc64el python3-attr all 26.1.0-1 [72.2 kB] Get:60 http://deb.debian.org/debian unstable/main ppc64el python3-autocommand all 2.2.2-4 [13.7 kB] Get:61 http://deb.debian.org/debian unstable/main ppc64el python3-build all 1.5.1-1 [85.5 kB] Get:62 http://deb.debian.org/debian unstable/main ppc64el python3-certifi all 2026.7.22+ds-1 [9928 B] Get:63 http://deb.debian.org/debian unstable/main ppc64el python3-cycler all 0.12.1-3 [9112 B] Get:64 http://deb.debian.org/debian unstable/main ppc64el python3-dateutil all 2.9.0-5 [78.7 kB] Get:65 http://deb.debian.org/debian unstable/main ppc64el python3-decorator all 5.3.1-1 [33.3 kB] Get:66 http://deb.debian.org/debian unstable/main ppc64el python3-editables all 0.5-3 [14.9 kB] Get:67 http://deb.debian.org/debian unstable/main ppc64el python3-idna all 3.19-1 [45.2 kB] Get:68 http://deb.debian.org/debian unstable/main ppc64el python3-inflect all 7.5.0-2 [32.8 kB] Get:69 http://deb.debian.org/debian unstable/main ppc64el python3-iniconfig all 2.1.0-2 [7540 B] Get:70 http://deb.debian.org/debian unstable/main ppc64el python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:71 http://deb.debian.org/debian unstable/main ppc64el python3-legacy-cgi all 2.6.4-3 [16.9 kB] Get:72 http://deb.debian.org/debian unstable/main ppc64el python3-mrcfile all 1.5.4-4 [121 kB] Get:73 http://deb.debian.org/debian unstable/main ppc64el python3 ppc64el 3.14.7-3 [26.0 kB] Get:74 http://deb.debian.org/debian unstable/main ppc64el python3-all ppc64el 3.14.7-3 [984 B] Get:75 http://deb.debian.org/debian unstable/main ppc64el python3-all-dev ppc64el 3.14.7-3 [1008 B] Get:76 http://deb.debian.org/debian unstable/main ppc64el python3-dev ppc64el 3.14.7-3 [26.7 kB] Get:77 http://deb.debian.org/debian unstable/main ppc64el python3-minimal ppc64el 3.14.7-3 [25.3 kB] Get:78 http://deb.debian.org/debian unstable/main ppc64el libxft2 ppc64el 2.3.6-1+b5 [58.0 kB] Get:79 http://deb.debian.org/debian unstable/main ppc64el libxxhash-dev ppc64el 0.8.3-2+b2 [85.1 kB] Get:80 http://deb.debian.org/debian unstable/main ppc64el libxxhash0 ppc64el 0.8.3-2+b2 [24.7 kB] Get:81 http://deb.debian.org/debian unstable/main ppc64el libz3-4 ppc64el 4.13.3-1.1 [8730 kB] Get:82 http://deb.debian.org/debian unstable/main ppc64el libzopfli1 ppc64el 1.0.3-3 [114 kB] Get:83 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-brotli ppc64el 1.2.0-4 [361 kB] Get:84 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-contourpy ppc64el 1.3.3-2 [281 kB] Get:85 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-fonttools ppc64el 4.62.1-7 [1653 kB] Get:86 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-kiwisolver ppc64el 1.5.0-2 [80.2 kB] Get:87 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libxml2-16 ppc64el 2.15.3+dfsg-1 [680 kB] Get:88 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el libyuv0 ppc64el 0.0.1959.20260817-1 [122 kB] Get:89 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-lxml ppc64el 6.1.0-1 [2059 kB] Get:90 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-matplotlib ppc64el 3.10.9+dfsg1-1 [22.8 MB] Get:91 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el mesa-libgallium ppc64el 26.1.6-1 [9813 kB] Get:92 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-numpy ppc64el 1:2.4.6+ds-4 [4877 kB] Get:93 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el pybind11-dev all 3.0.1-3 [240 kB] Get:94 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-cairo ppc64el 1.29.0-1 [124 kB] Get:95 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-biopython ppc64el 1.88+dfsg-2 [1651 kB] Get:96 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-charset-normalizer ppc64el 3.4.7-2 [239 kB] Get:97 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-hdf5plugin all 5.1.0-1 [27.1 kB] Get:98 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-installer all 1.0.1+dfsg1-2 [19.6 kB] Get:99 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-lz4 ppc64el 4.4.5+dfsg-1 [27.4 kB] Get:100 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-msgpack ppc64el 1.1.2-4 [103 kB] Fetched 78.0 MB in 1s (147 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python-matplotlib-data_3.10.9+dfsg1-1_all.deb' dpkg-name: info: moved 'libxfixes3_1%3a6.0.0-2+b5_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxfixes3_6.0.0-2+b5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-lxml_6.1.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-kiwisolver_1.5.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-freetype_2.5.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-attr_26.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libxkbcommon0_1.13.1-1_ppc64el.deb' dpkg-name: info: moved 'libxdmcp-dev_1%3a1.1.5-2+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxdmcp-dev_1.1.5-2+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-dev_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-editables_0.5-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/make_4.4.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/nettle-dev_3.10.2-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-h5py_3.16.0-6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/pkg-config_2.5.1-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libxxhash-dev_0.8.3-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-hatchling_1.30.1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-dateutil_2.9.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/patch_2.8-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/mawk_1.3.4.20260302-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-certifi_2026.7.22+ds-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-chardet_5.2.0+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-cairo_1.29.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/pkgconf-bin_2.5.1-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libxml2-16_2.15.3+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libzstd-dev_1.5.7+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-fonttools_4.62.1-7_ppc64el.deb' dpkg-name: info: moved 'libxrender1_1%3a0.9.12-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxrender1_0.9.12-1+b2_ppc64el.deb' dpkg-name: info: moved 'libxinerama1_2%3a1.1.4-3+b5_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxinerama1_1.1.4-3+b5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/ocl-icd-libopencl1_2.3.4-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/media-types_14.0.0_all.deb' dpkg-name: info: moved 'libxss1_1%3a1.2.3-1+b4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxss1_1.2.3-1+b4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-all-dev_3.14.7-3_ppc64el.deb' dpkg-name: info: moved 'libxres1_2%3a1.2.1-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxres1_1.2.1-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-legacy-cgi_2.6.4-3_all.deb' dpkg-name: info: moved 'procps_2%3a4.0.7-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/procps_4.0.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/pybind11-dev_3.0.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-charset-normalizer_3.4.7-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libxxhash0_0.8.3-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/pkgconf_2.5.1-4_ppc64el.deb' dpkg-name: info: moved 'libxi6_2%3a1.8.3-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxi6_1.8.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/ncurses-base_6.6+20260608-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-contourpy_1.3.3-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libxkbcommon-x11-0_1.13.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-inflect_7.5.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-brotli_1.2.0-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/po-debconf_1.0.22_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-iniconfig_2.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/perl_5.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/mesa-libgallium_26.1.6-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-build_1.5.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libzstd1_1.5.7+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/pybuild-plugin-pyproject_7.20260623_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-flexparser_0.4-2_all.deb' dpkg-name: info: moved 'libxrandr2_2%3a1.5.4-1+b4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxrandr2_1.5.4-1+b4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libz3-4_4.13.3-1.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/ncurses-bin_6.6+20260608-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/m4_1.4.21-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/openssl_3.6.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-mrcfile_1.5.4-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/netbase_6.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/pymol-data_3.1.0+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libxslt1.1_1.1.45-0.1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/perl-base_5.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libxnvctrl0_535.171.04-1+b3_ppc64el.deb' dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-2+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxdmcp6_1.1.5-2+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-all_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-installer_1.0.1+dfsg1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/pci.ids_0.0~2026.07.21-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/perl-modules-5.42_5.42.3-1_all.deb' dpkg-name: info: moved 'libxtst6_2%3a1.2.5-1+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxtst6_1.2.5-1+b2_ppc64el.deb' dpkg-name: info: moved 'python3-numpy_1%3a2.4.6+ds-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/python3-numpy_2.4.6+ds-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-flexcache_0.3-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-autocommand_2.2.2-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-h5py-serial_3.16.0-6_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/openssl-provider-legacy_3.6.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-cycler_0.12.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libzopfli1_1.0.3-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-natsort_8.4.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-more-itertools_11.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libxft2_2.3.6-1+b5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-jaraco.text_4.0.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-msgpack_1.1.2-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-lz4_4.4.5+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libyaml-0-2_0.2.5-2+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-hdf5plugin_5.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-minimal_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-jaraco.context_6.0.1-2_all.deb' dpkg-name: info: moved 'libxxf86vm1_1%3a1.1.4-2+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxxf86vm1_1.1.4-2+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-jaraco.functools_4.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/linux-libc-dev_7.1.12-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-mpmath_1.4.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-matplotlib_3.10.9+dfsg1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-idna_3.19-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libxshmfence1_1.3.3-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/man-db_2.13.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-decorator_5.3.1-1_all.deb' dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpmxokkdar/libxext6_1.3.4-1+b4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/libyuv0_0.0.1959.20260817-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxokkdar/python3-biopython_1.88+dfsg-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el sfftw-dev ppc64el 2.1.5-8 [281 kB] Get:2 http://deb.debian.org/debian unstable/main ppc64el sfftw2 ppc64el 2.1.5-8 [236 kB] Get:3 http://deb.debian.org/debian unstable/main ppc64el python3-nxmx all 0.0.7-1 [16.7 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el python3-platformdirs all 4.10.0-1 [18.3 kB] Get:5 http://deb.debian.org/debian unstable/main ppc64el python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:6 http://deb.debian.org/debian unstable/main ppc64el python3-opengl all 3.1.10+dfsg-1 [624 kB] Get:7 http://deb.debian.org/debian unstable/main ppc64el python3-pyparsing all 3.3.2-2 [165 kB] Get:8 http://deb.debian.org/debian unstable/main ppc64el python3-pyqt5 ppc64el 5.15.11+dfsg-6 [2473 kB] Get:9 http://deb.debian.org/debian unstable/main ppc64el python3-pyqt5.qtopengl ppc64el 5.15.11+dfsg-6 [203 kB] Get:10 http://deb.debian.org/debian unstable/main ppc64el python3-pytest all 9.1.1-1 [280 kB] Get:11 http://deb.debian.org/debian unstable/main ppc64el python3-ordered-set all 4.1.0-1 [9628 B] Get:12 http://deb.debian.org/debian unstable/main ppc64el python3-packaging all 26.2-2 [84.2 kB] Get:13 http://deb.debian.org/debian unstable/main ppc64el python3-pathspec all 1.1.1-2 [38.3 kB] Get:14 http://deb.debian.org/debian unstable/main ppc64el python3-pip all 26.1.2+dfsg-1 [1402 kB] Get:15 http://deb.debian.org/debian unstable/main ppc64el python3-pluggy all 1.6.0-2 [27.2 kB] Get:16 http://deb.debian.org/debian unstable/main ppc64el python3-procrunner all 2.3.3-2 [13.9 kB] Get:17 http://deb.debian.org/debian unstable/main ppc64el python3-psutil ppc64el 7.1.0-1 [225 kB] Get:18 http://deb.debian.org/debian unstable/main ppc64el python3-pyproject-hooks all 1.2.0-2 [11.7 kB] Get:19 http://deb.debian.org/debian unstable/main ppc64el python3-reportlab all 5.0.0-4 [823 kB] Get:20 http://deb.debian.org/debian unstable/main ppc64el python3-rlpycairo all 0.3.0-4 [10.1 kB] Get:21 http://deb.debian.org/debian unstable/main ppc64el python3-typeguard all 4.4.4-3 [37.1 kB] Get:22 http://deb.debian.org/debian unstable/main ppc64el python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:23 http://deb.debian.org/debian unstable/main ppc64el python3-urllib3 all 2.7.0-3 [119 kB] Get:24 http://deb.debian.org/debian unstable/main ppc64el python3-zipp all 3.23.0-1 [11.0 kB] Get:25 http://deb.debian.org/debian unstable/main ppc64el python3-zopfli ppc64el 0.4.3-2 [11.0 kB] Get:26 http://deb.debian.org/debian unstable/main ppc64el python3-tk ppc64el 3.14.7-3 [8472 B] Get:27 http://deb.debian.org/debian unstable/main ppc64el readline-common all 8.3-4 [74.8 kB] Get:28 http://deb.debian.org/debian unstable/main ppc64el python3-requests all 2.34.2-1 [77.6 kB] Get:29 http://deb.debian.org/debian unstable/main ppc64el rsync ppc64el 3.5.0+ds1-2 [505 kB] Get:30 http://deb.debian.org/debian unstable/main ppc64el scons all 4.10.1+dfsg-2 [564 kB] Get:31 http://deb.debian.org/debian unstable/main ppc64el sed ppc64el 4.9-3 [335 kB] Get:32 http://deb.debian.org/debian unstable/main ppc64el sensible-utils all 0.0.26 [27.0 kB] Get:33 http://deb.debian.org/debian unstable/main ppc64el python3-pkg-resources all 80.9.0-2 [224 kB] Get:34 http://deb.debian.org/debian unstable/main ppc64el sgml-base all 1.31+nmu1 [10.9 kB] Get:35 http://deb.debian.org/debian unstable/main ppc64el shared-mime-info ppc64el 2.4-5+b3 [761 kB] Get:36 http://deb.debian.org/debian unstable/main ppc64el python3-six all 1.17.0-3 [15.3 kB] Get:37 http://deb.debian.org/debian unstable/main ppc64el sphinx-rtd-theme-common all 3.1.0+dfsg-2 [1022 kB] Get:38 http://deb.debian.org/debian unstable/main ppc64el python3-sympy all 1.14.0-4 [4227 kB] Get:39 http://deb.debian.org/debian unstable/main ppc64el sysvinit-utils ppc64el 3.18-1 [31.9 kB] Get:40 http://deb.debian.org/debian unstable/main ppc64el tar ppc64el 1.35+dfsg-5 [848 kB] Get:41 http://deb.debian.org/debian unstable/main ppc64el python3-tqdm all 4.70.0-1 [91.2 kB] Get:42 http://deb.debian.org/debian unstable/main ppc64el tzdata all 2026c-1 [260 kB] Get:43 http://deb.debian.org/debian unstable/main ppc64el python3-ufolib2 all 0.18.1+dfsg1-2 [32.3 kB] Get:44 http://deb.debian.org/debian unstable/main ppc64el python3-uharfbuzz ppc64el 0.53.3-1 [197 kB] Get:45 http://deb.debian.org/debian unstable/main ppc64el unicode-data all 17.0.0-2 [9354 kB] Get:46 http://deb.debian.org/debian unstable/main ppc64el w3c-sgml-lib all 1.3-3 [273 kB] Get:47 http://deb.debian.org/debian unstable/main ppc64el python3-wheel all 0.47.0-1 [26.9 kB] Get:48 http://deb.debian.org/debian unstable/main ppc64el xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:49 http://deb.debian.org/debian unstable/main ppc64el xfonts-utils ppc64el 1:7.7+7 [99.0 kB] Get:50 http://deb.debian.org/debian unstable/main ppc64el xkb-data all 2.48-1 [841 kB] Get:51 http://deb.debian.org/debian unstable/main ppc64el xml-core all 0.21 [19.0 kB] Get:52 http://deb.debian.org/debian unstable/main ppc64el x11-common all 1:7.7+26 [217 kB] Get:53 http://deb.debian.org/debian unstable/main ppc64el xorg-sgml-doctools all 1:1.12.1-1 [23.9 kB] Get:54 http://deb.debian.org/debian unstable/main ppc64el x11proto-dev all 2025.1-1 [605 kB] Get:55 http://deb.debian.org/debian unstable/main ppc64el xtrans-dev all 1.6.0-1 [93.5 kB] Get:56 http://deb.debian.org/debian unstable/main ppc64el xz-utils ppc64el 5.8.3-1 [742 kB] Get:57 http://deb.debian.org/debian unstable/main ppc64el zlib1g ppc64el 1:1.3.dfsg+really1.3.2-3 [90.4 kB] Get:58 http://deb.debian.org/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:59 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-pycbf ppc64el 0.9.7+dfsg1-5.1+b2 [203 kB] Get:60 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-numpy-dev ppc64el 1:2.4.6+ds-4 [140 kB] Get:61 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-pil ppc64el 12.3.0-1 [580 kB] Get:62 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-pil.imagetk ppc64el 12.3.0-1 [84.1 kB] Get:63 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-pymol ppc64el 3.1.0+dfsg-1+b3 [7311 kB] Get:64 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-pyqt5.sip ppc64el 12.19.0-1 [82.7 kB] Get:65 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-pint all 0.25.3-4 [231 kB] Get:66 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3.14 ppc64el 3.14.7-1 [861 kB] Get:67 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3.14-dev ppc64el 3.14.7-1 [516 kB] Get:68 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3.14-minimal ppc64el 3.14.7-1 [2597 kB] Get:69 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3.14-tk ppc64el 3.14.7-1 [106 kB] Get:70 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-yaml ppc64el 6.0.3-1 [172 kB] Get:71 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-scipy ppc64el 1.17.1-5 [19.4 MB] Get:72 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-setuptools all 80.9.0-2 [698 kB] Get:73 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el systemd ppc64el 262~rc1-2 [3358 kB] Get:74 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el systemd-sysv ppc64el 262~rc1-2 [41.4 kB] Get:75 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-trove-classifiers all 2026.1.14.14-1 [10.9 kB] Get:76 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el util-linux ppc64el 2.42.2-4 [1336 kB] Get:77 http://snapshot.debian.org/archive/debian/20260902T022825Z unstable/main ppc64el python3-wxgtk4.0 ppc64el 4.2.4+dfsg-1 [9987 kB] Fetched 78.9 MB in 1s (153 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/w3c-sgml-lib_1.3-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pluggy_1.6.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/readline-common_8.3-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3.14-dev_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-wheel_0.47.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-sympy_1.14.0-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-opengl_3.1.10+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pyparsing_3.3.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/sfftw2_2.1.5-8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-six_1.17.0-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pathspec_1.1.1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pint_0.25.3-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pymol_3.1.0+dfsg-1+b3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-zopfli_0.4.3-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/x11proto-dev_2025.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/sphinx-rtd-theme-common_3.1.0+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-procrunner_2.3.3-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/tzdata_2026c-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/sensible-utils_0.0.26_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/tar_1.35+dfsg-5_ppc64el.deb' dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpp5o6sfdv/zlib1g_1.3.dfsg+really1.3.2-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/sgml-base_1.31+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pyqt5.qtopengl_5.15.11+dfsg-6_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pyproject-hooks_1.2.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/shared-mime-info_2.4-5+b3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-requests_2.34.2-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3.14_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pycbf_0.9.7+dfsg1-5.1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-trove-classifiers_2026.1.14.14-1_all.deb' dpkg-name: info: moved 'xfonts-utils_1%3a7.7+7_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpp5o6sfdv/xfonts-utils_7.7+7_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/systemd-sysv_262~rc1-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-packaging_26.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-ordered-set_4.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/scons_4.10.1+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pil_12.3.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/sed_4.9-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/xz-utils_5.8.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-zipp_3.23.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/sysvinit-utils_3.18-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pytest_9.1.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-uharfbuzz_0.53.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pyqt5.sip_12.19.0-1_ppc64el.deb' dpkg-name: info: moved 'xfonts-encodings_1%3a1.0.4-2.2_all.deb' to '/srv/rebuilderd/tmp/tmpp5o6sfdv/xfonts-encodings_1.0.4-2.2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/systemd_262~rc1-2_ppc64el.deb' dpkg-name: info: moved 'xorg-sgml-doctools_1%3a1.12.1-1_all.deb' to '/srv/rebuilderd/tmp/tmpp5o6sfdv/xorg-sgml-doctools_1.12.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-yaml_6.0.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-tqdm_4.70.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/xml-core_0.21_all.deb' dpkg-name: info: moved 'x11-common_1%3a7.7+26_all.deb' to '/srv/rebuilderd/tmp/tmpp5o6sfdv/x11-common_7.7+26_all.deb' dpkg-name: info: moved 'python3-numpy-dev_1%3a2.4.6+ds-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-numpy-dev_2.4.6+ds-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pip_26.1.2+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/unicode-data_17.0.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3.14-minimal_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/rsync_3.5.0+ds1-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pil.imagetk_12.3.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/xtrans-dev_1.6.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-tk_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-setuptools_80.9.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-scipy_1.17.1-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-wxgtk4.0_4.2.4+dfsg-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-nxmx_0.0.7-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pyqt5_5.15.11+dfsg-6_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pkg-resources_80.9.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-platformdirs_4.10.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-typeguard_4.4.4-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-urllib3_2.7.0-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-typing-extensions_4.16.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-pygments_2.20.0+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3.14-tk_3.14.7-1_ppc64el.deb' dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpp5o6sfdv/zlib1g-dev_1.3.dfsg+really1.3.2-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/util-linux_2.42.2-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-psutil_7.1.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/sfftw-dev_2.1.5-8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-rlpycairo_0.3.0-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/xkb-data_2.48-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-ufolib2_0.18.1+dfsg1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp5o6sfdv/python3-reportlab_5.0.0-4_all.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_ppc64el.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_ppc64el.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp2weospmm/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture ppc64el is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky 127.0.0.1 - - [12/Sep/2026 07:29:39] code 404, message File not found 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:34207 ./ InRelease 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:34207 ./ Release [462 B] 127.0.0.1 - - [12/Sep/2026 07:29:39] code 404, message File not found 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:34207 ./ Release.gpg 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:34207 ./ Packages [846 kB] Fetched 846 kB in 0s (37.1 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./gcc-16-base_16.2.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libc-gconv-modules-extra_2.43-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libc6_2.43-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libgcc-s1_16.2.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./mawk_1.3.4.20260302-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./base-files_14.2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libtinfo6_6.6%2b20260608-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./debianutils_5.24_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./bash_5.3-3%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libacl1_2.4.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libattr1_2.6.0-1_ppc64el.deb HTTP/1.1" 200 - 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127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libbz2-1.0_1.0.8-6%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./liblzma5_5.8.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libmd0_1.2.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./tar_1.35%2bdfsg-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./dpkg_1.23.7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./findutils_4.11.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./grep_3.12-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./gzip_1.14-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./hostname_3.25_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./ncurses-bin_6.6%2b20260608-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libcrypt1_4.5.2%2b20251210-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./perl-base_5.42.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./sed_4.9-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libcap-ng0_0.9.5-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libaudit1_4.1.2-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libdb5.3t64_5.3.28%2bdfsg2-11%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./debconf_1.5.92_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libpam0g_1.7.0-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libpam-modules-bin_1.7.0-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libpam-modules_1.7.0-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libpam-runtime_1.7.0-8_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libblkid1_2.42.2-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libmount1_2.42.2-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libsmartcols1_2.42.2-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libudev1_262%7erc1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libuuid1_2.42.2-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./util-linux_2.42.2-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libdebconfclient0_0.283_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./base-passwd_3.6.8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./init-system-helpers_1.69%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./libc-bin_2.43-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./ncurses-base_6.6%2b20260608-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:39] "GET /./sysvinit-utils_3.18-1_ppc64el.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky 127.0.0.1 - - [12/Sep/2026 07:29:41] code 404, message File not found 127.0.0.1 - - [12/Sep/2026 07:29:41] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:34207 ./ InRelease 127.0.0.1 - - [12/Sep/2026 07:29:41] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:34207 ./ Release 127.0.0.1 - - [12/Sep/2026 07:29:41] code 404, message File not found 127.0.0.1 - - [12/Sep/2026 07:29:41] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:34207 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [12/Sep/2026 07:29:49] "GET /./libsystemd-shared_262%7erc1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:49] "GET /./systemd_262%7erc1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:49] "GET /./systemd-sysv_262%7erc1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:49] "GET /./fonts-lato_2.015-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:49] "GET /./libexpat1_2.8.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:49] "GET /./libpython3.14-minimal_3.14.7-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:49] "GET /./python3.14-minimal_3.14.7-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:49] "GET /./python3-minimal_3.14.7-3_ppc64el.deb HTTP/1.1" 200 - 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127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./python3-hdf5plugin_5.1.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./python3-kiwisolver_1.5.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./libann-cctbx0_1.1.2%2bdoc-9%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./python3-contourpy_1.3.3-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./python3-matplotlib_3.10.9%2bdfsg1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./python3-pycbf_0.9.7%2bdfsg1-5.1%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./python3-editables_0.5-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./libann-cctbx-dev_1.1.2%2bdoc-9%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./dh-python_7.20260623_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./scons_4.10.1%2bdfsg-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./libssm-dev_1.4.0-2%2bb4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./pybuild-plugin-pyproject_7.20260623_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Sep/2026 07:29:55] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp2weospmm/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky Reading package lists... Building dependency tree... Reading state information... g++-16 is already the newest version (16.2.0-1). g++-16 set to manually installed. comerr-dev is already the newest version (2.1-1.47.4-1+b1). comerr-dev set to manually installed. coreutils is already the newest version (9.10-1). automake is already the newest version (1:1.18.1-4). automake set to manually installed. fonts-dejavu-core is already the newest version (2.37-9). fonts-dejavu-core set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. libasound2-data is already the newest version (1.2.16.1-1). libasound2-data set to manually installed. ibverbs-providers is already the newest version (64.0-1). ibverbs-providers set to manually installed. libamdhip64-6 is already the newest version (6.4.3-5). libamdhip64-6 set to manually installed. autopoint is already the newest version (1.0-3). autopoint set to manually installed. libann-cctbx0 is already the newest version (1.1.2+doc-9+b1). libann-cctbx0 set to manually installed. fonts-font-awesome-legacy is already the newest version (6-3). fonts-font-awesome-legacy set to manually installed. adwaita-icon-theme is already the newest version (50.0-2). adwaita-icon-theme set to manually installed. bsdextrautils is already the newest version (2.42.2-4). bsdextrautils set to manually installed. fonts-dejavu-mono is already the newest version (2.37-9). fonts-dejavu-mono set to manually installed. gcc is already the newest version (4:16.1.0-3). gcc set to manually installed. dbus-daemon is already the newest version (1.16.2-5+b1). dbus-daemon set to manually installed. fonts-lato is already the newest version (2.015-1). fonts-lato set to manually installed. dconf-gsettings-backend is already the newest version (0.49.0-4+b1). dconf-gsettings-backend set to manually installed. diffutils is already the newest version (1:3.12-1). dbus-user-session is already the newest version (1.16.2-5+b1). dbus-user-session set to manually installed. jq is already the newest version (1.8.2-1). jq set to manually installed. autoconf is already the newest version (2.73-2). autoconf set to manually installed. libacl1 is already the newest version (2.4.0-1). libaec0 is already the newest version (1.1.7-1). libaec0 set to manually installed. gettext-base is already the newest version (1.0-3). gettext-base set to manually installed. groff-base is already the newest version (1.24.1-1). groff-base set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. fontconfig is already the newest version (2.17.1-5). fontconfig set to manually installed. gcc-16-base is already the newest version (16.2.0-1). dconf-service is already the newest version (0.49.0-4+b1). dconf-service set to manually installed. krb5-multidev is already the newest version (1.22.1-3). krb5-multidev set to manually installed. fftw2 is already the newest version (2.1.5-8). fftw2 set to manually installed. fonts-dejavu-extra is already the newest version (2.37-9). fonts-dejavu-extra set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.1-1). dh-strip-nondeterminism set to manually installed. libasound2t64 is already the newest version (1.2.16.1-1). libasound2t64 set to manually installed. libamd-comgr3 is already the newest version (7.0.2+dfsg-3). libamd-comgr3 set to manually installed. glycin-thumbnailers is already the newest version (2.1.5+ds-2). glycin-thumbnailers set to manually installed. glycin-loaders is already the newest version (2.1.5+ds-2). glycin-loaders set to manually installed. base-passwd is already the newest version (3.6.8). cpp is already the newest version (4:16.1.0-3). cpp set to manually installed. libasyncns0 is already the newest version (0.8-8). libasyncns0 set to manually installed. gcc-16 is already the newest version (16.2.0-1). gcc-16 set to manually installed. debconf is already the newest version (1.5.92). architecture-properties is already the newest version (0.2.6+b2). architecture-properties set to manually installed. file is already the newest version (1:5.47-4). file set to manually installed. hicolor-icon-theme is already the newest version (0.18-2). hicolor-icon-theme set to manually installed. libantlr3c-dev is already the newest version (3.4+dfsg-4+b3). libantlr3c-dev set to manually installed. gcc-powerpc64le-linux-gnu is already the newest version (4:16.1.0-3). gcc-powerpc64le-linux-gnu set to manually installed. libaec-dev is already the newest version (1.1.7-1). libaec-dev set to manually installed. cpp-16 is already the newest version (16.2.0-1). cpp-16 set to manually installed. gtk-update-icon-cache is already the newest version (4.22.4+ds-1). gtk-update-icon-cache set to manually installed. fonts-lyx is already the newest version (2.5.2-1). fonts-lyx set to manually installed. dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. dh-exec is already the newest version (0.31). dh-exec set to manually installed. fonts-urw-base35 is already the newest version (20200910-9). fonts-urw-base35 set to manually installed. findutils is already the newest version (4.11.0-2). build-essential is already the newest version (12.12). build-essential set to manually installed. grep is already the newest version (3.12-1). libasan8 is already the newest version (16.2.0-1). libasan8 set to manually installed. dh-python is already the newest version (7.20260623). dh-python set to manually installed. ca-certificates is already the newest version (20260816). ca-certificates set to manually installed. fontconfig-config is already the newest version (2.17.1-5). fontconfig-config set to manually installed. init-system-helpers is already the newest version (1.69+nmu1). dbus is already the newest version (1.16.2-5+b1). dbus set to manually installed. binutils-common is already the newest version (2.47-2). binutils-common set to manually installed. at-spi2-common is already the newest version (2.61.90-1). at-spi2-common set to manually installed. dbus-session-bus-common is already the newest version (1.16.2-5). dbus-session-bus-common set to manually installed. gzip is already the newest version (1.14-1). bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. cpp-powerpc64le-linux-gnu is already the newest version (4:16.1.0-3). cpp-powerpc64le-linux-gnu set to manually installed. gettext is already the newest version (1.0-3). gettext set to manually installed. debianutils is already the newest version (5.24). bash is already the newest version (5.3-3+b1). libapparmor1 is already the newest version (4.1.8-2). libapparmor1 set to manually installed. gcc-16-powerpc64le-linux-gnu is already the newest version (16.2.0-1). gcc-16-powerpc64le-linux-gnu set to manually installed. g++ is already the newest version (4:16.1.0-3). g++ set to manually installed. dash is already the newest version (0.5.12-12). dbus-bin is already the newest version (1.16.2-5+b1). dbus-bin set to manually installed. hdf5-helpers is already the newest version (2.2.0+repack-4). hdf5-helpers set to manually installed. bubblewrap is already the newest version (0.12.0-1). bubblewrap set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. fftw-dev is already the newest version (2.1.5-8). fftw-dev set to manually installed. dwz is already the newest version (0.17-1). dwz set to manually installed. libabsl20260526 is already the newest version (20260526.0-2). libabsl20260526 set to manually installed. libantlr3c-3.4-0 is already the newest version (3.4+dfsg-4+b3). libantlr3c-3.4-0 set to manually installed. g++-powerpc64le-linux-gnu is already the newest version (4:16.1.0-3). g++-powerpc64le-linux-gnu set to manually installed. binutils is already the newest version (2.47-2). binutils set to manually installed. libann-cctbx-dev is already the newest version (1.1.2+doc-9+b1). libann-cctbx-dev set to manually installed. debhelper is already the newest version (14.3). debhelper set to manually installed. dbus-system-bus-common is already the newest version (1.16.2-5). dbus-system-bus-common set to manually installed. hostname is already the newest version (3.25). base-files is already the newest version (14.2). intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. cpp-16-powerpc64le-linux-gnu is already the newest version (16.2.0-1). cpp-16-powerpc64le-linux-gnu set to manually installed. fonts-font-awesome is already the newest version (7.3.0+dfsg-1). fonts-font-awesome set to manually installed. binutils-powerpc64le-linux-gnu is already the newest version (2.47-2). binutils-powerpc64le-linux-gnu set to manually installed. libaom3 is already the newest version (3.14.1-1). libaom3 set to manually installed. dpkg is already the newest version (1.23.7). g++-16-powerpc64le-linux-gnu is already the newest version (16.2.0-1). g++-16-powerpc64le-linux-gnu set to manually installed. libc-bin is already the newest version (2.43-4). libc6 is already the newest version (2.43-4). libavahi-client3 is already the newest version (0.8-18). libavahi-client3 set to manually installed. libboost-timer1.90.0 is already the newest version (1.90.0-6.1). libboost-timer1.90.0 set to manually installed. libdconf1 is already the newest version (0.49.0-4+b1). libdconf1 set to manually installed. libdebconfclient0 is already the newest version (0.283). libboost-serialization1.90.0 is already the newest version (1.90.0-6.1). libboost-serialization1.90.0 set to manually installed. libcloudproviders0 is already the newest version (0.4.1-1). libcloudproviders0 set to manually installed. libboost-chrono1.90.0 is already the newest version (1.90.0-6.1). libboost-chrono1.90.0 set to manually installed. libbinutils is already the newest version (2.47-2). libbinutils set to manually installed. libccp4-data is already the newest version (8.0.0-5). libccp4-data set to manually installed. libcc1-0 is already the newest version (16.2.0-1). libcc1-0 set to manually installed. libeigen3-dev is already the newest version (3.4.0-5). libeigen3-dev set to manually installed. libattr1 is already the newest version (1:2.6.0-1). libcrypt1 is already the newest version (1:4.5.2+20251210-1). libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). libavahi-common-data is already the newest version (0.8-18). libavahi-common-data set to manually installed. libclipper2 is already the newest version (2.1.20201109-2+b4). libclipper2 set to manually installed. libboost-dev is already the newest version (1.90.0.2+nmu1). libboost-dev set to manually installed. libcurl4t64 is already the newest version (8.22.0~rc3-1). libcurl4t64 set to manually installed. libboost-container1.90-dev is already the newest version (1.90.0-6.1). libboost-container1.90-dev set to manually installed. libcolord2 is already the newest version (1.4.8-3). libcolord2 set to manually installed. libboost-graph1.90-dev is already the newest version (1.90.0-6.1). libboost-graph1.90-dev set to manually installed. libbrotli1 is already the newest version (1.2.0-4). libbrotli1 set to manually installed. libc-dev-bin is already the newest version (2.43-4). libc-dev-bin set to manually installed. libcbf1t64 is already the newest version (0.9.7+dfsg1-5.1+b2). libcbf1t64 set to manually installed. libcurl4-openssl-dev is already the newest version (8.22.0~rc3-1). libcurl4-openssl-dev set to manually installed. libboost-timer-dev is already the newest version (1.90.0.2+nmu1). libboost-timer-dev set to manually installed. libboost-regex1.90-dev is already the newest version (1.90.0-6.1). libboost-regex1.90-dev set to manually installed. libboost-test1.90.0 is already the newest version (1.90.0-6.1). libboost-test1.90.0 set to manually installed. libelf1t64 is already the newest version (0.196-1). libelf1t64 set to manually installed. libboost-atomic1.90-dev is already the newest version (1.90.0-6.1). libboost-atomic1.90-dev set to manually installed. libboost-python1.90-dev is already the newest version (1.90.0-6.1). libboost-python1.90-dev set to manually installed. libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. libcap-ng0 is already the newest version (0.9.5-1). libdebhelper-perl is already the newest version (14.3). libdebhelper-perl set to manually installed. libcairo-gobject2 is already the newest version (1.18.4-3+b1). libcairo-gobject2 set to manually installed. libblas3 is already the newest version (3.12.1-8). libblas3 set to manually installed. libdrm-amdgpu1 is already the newest version (2.4.134-3). libdrm-amdgpu1 set to manually installed. libcap2 is already the newest version (1:2.78-1+b1). libcap2 set to manually installed. libboost-thread-dev is already the newest version (1.90.0.2+nmu1). libboost-thread-dev set to manually installed. libavahi-common3 is already the newest version (0.8-18). libavahi-common3 set to manually installed. libdav1d7 is already the newest version (1.5.4-1). libdav1d7 set to manually installed. libclang-common-21-dev is already the newest version (1:21.1.8-10). libclang-common-21-dev set to manually installed. libblkid1 is already the newest version (2.42.2-4). libdrm2 is already the newest version (2.4.134-3). libdrm2 set to manually installed. libdbus-1-3 is already the newest version (1.16.2-5+b1). libdbus-1-3 set to manually installed. libccp4-dev is already the newest version (8.0.0-5+b1). libccp4-dev set to manually installed. libboost-test1.90-dev is already the newest version (1.90.0-6.1). libboost-test1.90-dev set to manually installed. libatomic1 is already the newest version (16.2.0-1). libatomic1 set to manually installed. libboost-python-dev is already the newest version (1.90.0.2+nmu1). libboost-python-dev set to manually installed. libedit2 is already the newest version (3.1-20260512-1). libedit2 set to manually installed. libatk1.0-0t64 is already the newest version (2.61.90-1). libatk1.0-0t64 set to manually installed. libboost-timer1.90-dev is already the newest version (1.90.0-6.1). libboost-timer1.90-dev set to manually installed. libboost-regex1.90.0 is already the newest version (1.90.0-6.1). libboost-regex1.90.0 set to manually installed. libccp4c0t64 is already the newest version (8.0.0-5+b1). libccp4c0t64 set to manually installed. libc6-dev is already the newest version (2.43-4). libc6-dev set to manually installed. libboost-container1.90.0 is already the newest version (1.90.0-6.1). libboost-container1.90.0 set to manually installed. libboost-numpy-dev is already the newest version (1.90.0.2+nmu1). libboost-numpy-dev set to manually installed. libboost-atomic1.90.0 is already the newest version (1.90.0-6.1). libboost-atomic1.90.0 set to manually installed. libboost-date-time1.90.0 is already the newest version (1.90.0-6.1). libboost-date-time1.90.0 set to manually installed. libboost-python1.90.0 is already the newest version (1.90.0-6.1). libboost-python1.90.0 set to manually installed. libboost-graph1.90.0 is already the newest version (1.90.0-6.1). libboost-graph1.90.0 set to manually installed. libatspi2.0-0t64 is already the newest version (2.61.90-1). libatspi2.0-0t64 set to manually installed. libcom-err2 is already the newest version (1.47.4-1+b1). libcom-err2 set to manually installed. libboost-chrono1.90-dev is already the newest version (1.90.0-6.1). libboost-chrono1.90-dev set to manually installed. libegl1 is already the newest version (1.7.0-3+b1). libegl1 set to manually installed. libdeflate0 is already the newest version (1.25-1). libdeflate0 set to manually installed. libavif16 is already the newest version (1.4.2-1). libavif16 set to manually installed. libctf-nobfd0 is already the newest version (2.47-2). libctf-nobfd0 set to manually installed. libbsd0 is already the newest version (0.12.2-3). libbsd0 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b2). libboost-serialization1.90-dev is already the newest version (1.90.0-6.1). libboost-serialization1.90-dev set to manually installed. libegl-mesa0 is already the newest version (26.1.6-1). libegl-mesa0 set to manually installed. libatk-bridge2.0-0t64 is already the newest version (2.61.90-1). libatk-bridge2.0-0t64 set to manually installed. libdatrie1 is already the newest version (0.2.14-2). libdatrie1 set to manually installed. libepoxy0 is already the newest version (1.5.10-2+b2). libepoxy0 set to manually installed. libboost-numpy1.90-dev is already the newest version (1.90.0-6.1). libboost-numpy1.90-dev set to manually installed. libctf0 is already the newest version (2.47-2). libctf0 set to manually installed. libdecor-0-0 is already the newest version (0.2.5-1+b1). libdecor-0-0 set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b1). libdeflate-dev is already the newest version (1.25-1). libdeflate-dev set to manually installed. libboost1.90-dev is already the newest version (1.90.0-6.1). libboost1.90-dev set to manually installed. libclipper-dev is already the newest version (2.1.20201109-2+b4). libclipper-dev set to manually installed. libboost-thread1.90-dev is already the newest version (1.90.0-6.1). libboost-thread1.90-dev set to manually installed. libcups2t64 is already the newest version (2.4.18-1). libcups2t64 set to manually installed. libde265-0 is already the newest version (1.1.1-1). libde265-0 set to manually installed. libccp4f0t64 is already the newest version (8.0.0-5+b1). libccp4f0t64 set to manually installed. libbrotli-dev is already the newest version (1.2.0-4). libbrotli-dev set to manually installed. libcurl4-gnutls is already the newest version (8.22.0~rc3-1). libcurl4-gnutls set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). libboost-exception1.90-dev is already the newest version (1.90.0-6.1). libboost-exception1.90-dev set to manually installed. libdouble-conversion3 is already the newest version (3.4.0-1+b1). libdouble-conversion3 set to manually installed. libboost-numpy1.90.0 is already the newest version (1.90.0-6.1). libboost-numpy1.90.0 set to manually installed. libboost-thread1.90.0 is already the newest version (1.90.0-6.1). libboost-thread1.90.0 set to manually installed. libcairo2 is already the newest version (1.18.4-3+b1). libcairo2 set to manually installed. libdrm-common is already the newest version (2.4.134-3). libdrm-common set to manually installed. libc-gconv-modules-extra is already the newest version (2.43-4). libcbf-dev is already the newest version (0.9.7+dfsg1-5.1+b2). libcbf-dev set to manually installed. libboost-date-time1.90-dev is already the newest version (1.90.0-6.1). libboost-date-time1.90-dev set to manually installed. libgl-dev is already the newest version (1.7.0-3+b1). libgl-dev set to manually installed. libesmtp6 is already the newest version (1.1.0-3.2+b2). libesmtp6 set to manually installed. libglib2.0-0t64 is already the newest version (2.89.4-2). libglib2.0-0t64 set to manually installed. libfabric1 is already the newest version (2.1.0-1.1+b2). libfabric1 set to manually installed. libgbm1 is already the newest version (26.1.6-1). libgbm1 set to manually installed. libimagequant0 is already the newest version (4.4.1-1+b2). libimagequant0 set to manually installed. libgpg-error0 is already the newest version (1.61-5). libgpg-error0 set to manually installed. libjpeg62-turbo-dev is already the newest version (1:3.1.3-4). libjpeg62-turbo-dev set to manually installed. libevdev2 is already the newest version (1.13.7+dfsg-1). libevdev2 set to manually installed. libhdf5-fortran-320 is already the newest version (2.2.0+repack-4). libhdf5-fortran-320 set to manually installed. libhdf5-hl-fortran-320 is already the newest version (2.2.0+repack-4). libhdf5-hl-fortran-320 set to manually installed. libgnutls30t64 is already the newest version (3.8.13-1). libgnutls30t64 set to manually installed. libidn2-dev is already the newest version (2.3.8-5). libidn2-dev set to manually installed. libfribidi0 is already the newest version (1.0.16-5+b1). libfribidi0 set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5+b2). libgmpxx4ldbl set to manually installed. libgl1-mesa-dri is already the newest version (26.1.6-1). libgl1-mesa-dri set to manually installed. libheif1 is already the newest version (1.23.2-1). libheif1 set to manually installed. libhdf5-320 is already the newest version (2.2.0+repack-4). libhdf5-320 set to manually installed. libglx-dev is already the newest version (1.7.0-3+b1). libglx-dev set to manually installed. libgssapi-krb5-2 is already the newest version (1.22.1-3). libgssapi-krb5-2 set to manually installed. libgdk-pixbuf-2.0-0 is already the newest version (2.44.7+dfsg-1). libgdk-pixbuf-2.0-0 set to manually installed. libfreetype6 is already the newest version (2.14.3+dfsg-2). libfreetype6 set to manually installed. libk5crypto3 is already the newest version (1.22.1-3). libk5crypto3 set to manually installed. libexpat1-dev is already the newest version (2.8.4-1). libexpat1-dev set to manually installed. libgssrpc4t64 is already the newest version (1.22.1-3). libgssrpc4t64 set to manually installed. libfftw3-dev is already the newest version (3.3.11-1). libfftw3-dev set to manually installed. libjq1 is already the newest version (1.8.2-1). libjq1 set to manually installed. libgles2 is already the newest version (1.7.0-3+b1). libgles2 set to manually installed. libjansson4 is already the newest version (2.15.1-1). libjansson4 set to manually installed. libfontenc1 is already the newest version (1:1.1.8-1+b3). libfontenc1 set to manually installed. libinput-bin is already the newest version (1.31.3-1). libinput-bin set to manually installed. libfftw3-single3 is already the newest version (3.3.11-1). libfftw3-single3 set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. libitm1 is already the newest version (16.2.0-1). libitm1 set to manually installed. libharfbuzz-subset0 is already the newest version (12.3.2-2+b2). libharfbuzz-subset0 set to manually installed. libjpeg-dev is already the newest version (1:3.1.3-4). libjpeg-dev set to manually installed. libjs-jquery is already the newest version (3.7.1+dfsg+~3.5.33-1). libjs-jquery set to manually installed. libidn2-0 is already the newest version (2.3.8-5). libidn2-0 set to manually installed. libjbig-dev is already the newest version (2.1-6.1+b3). libjbig-dev set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). libevent-pthreads-2.1-7t64 is already the newest version (2.1.13-stable-1). libevent-pthreads-2.1-7t64 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.1-1). libfile-stripnondeterminism-perl set to manually installed. libglu1-mesa is already the newest version (9.0.2-1.1+b4). libglu1-mesa set to manually installed. libhdf5-cpp-320 is already the newest version (2.2.0+repack-4). libhdf5-cpp-320 set to manually installed. libhsa-runtime64-1 is already the newest version (6.4.3+dfsg-5). libhsa-runtime64-1 set to manually installed. libgdk-pixbuf2.0-common is already the newest version (2.44.7+dfsg-1). libgdk-pixbuf2.0-common set to manually installed. libflac14 is already the newest version (1.5.0+ds-5+b1). libflac14 set to manually installed. libheif-plugin-libde265 is already the newest version (1.23.2-1). libheif-plugin-libde265 set to manually installed. libgav1-2 is already the newest version (0.20.0-2+b2). libgav1-2 set to manually installed. libhdf5-hl-cpp-320 is already the newest version (2.2.0+repack-4). libhdf5-hl-cpp-320 set to manually installed. libfftw3-long3 is already the newest version (3.3.11-1). libfftw3-long3 set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.13-stable-1). libevent-2.1-7t64 set to manually installed. libhwloc-plugins is already the newest version (2.14.0-2). libhwloc-plugins set to manually installed. libglew2.3 is already the newest version (2.3.1+dfsg2-5). libglew2.3 set to manually installed. libgudev-1.0-0 is already the newest version (238-7+b2). libgudev-1.0-0 set to manually installed. libffi8 is already the newest version (3.8.0-2). libffi8 set to manually installed. libice6 is already the newest version (2:1.1.1-1+b2). libice6 set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. libhwloc15 is already the newest version (2.14.0-2). libhwloc15 set to manually installed. libgtk-3-common is already the newest version (3.24.52-1). libgtk-3-common set to manually installed. libgnutls28-dev is already the newest version (3.8.13-1). libgnutls28-dev set to manually installed. libinput10 is already the newest version (1.31.3-1). libinput10 set to manually installed. libglvnd0 is already the newest version (1.7.0-3+b1). libglvnd0 set to manually installed. libgcrypt20 is already the newest version (1.12.2-1). libgcrypt20 set to manually installed. libfuse3-4 is already the newest version (3.18.2-2). libfuse3-4 set to manually installed. libfftw3-double3 is already the newest version (3.3.11-1). libfftw3-double3 set to manually installed. libhwy1t64 is already the newest version (1.3.0-5.1). libhwy1t64 set to manually installed. libfftw3-bin is already the newest version (3.3.11-1). libfftw3-bin set to manually installed. libgcc-16-dev is already the newest version (16.2.0-1). libgcc-16-dev set to manually installed. libexpat1 is already the newest version (2.8.4-1). libexpat1 set to manually installed. libibverbs1 is already the newest version (64.0-1). libibverbs1 set to manually installed. libicu78 is already the newest version (78.3-2). libicu78 set to manually installed. libglx0 is already the newest version (1.7.0-3+b1). libglx0 set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-5+b2). libgmp-dev set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.13-1). libgnutls-dane0t64 set to manually installed. libglu1-mesa-dev is already the newest version (9.0.2-1.1+b4). libglu1-mesa-dev set to manually installed. libglycin-2-0 is already the newest version (2.1.5+ds-2). libglycin-2-0 set to manually installed. libgraphite2-3 is already the newest version (1.3.15-2). libgraphite2-3 set to manually installed. libglx-mesa0 is already the newest version (26.1.6-1). libglx-mesa0 set to manually installed. libhdf5-dev is already the newest version (2.2.0+repack-4). libhdf5-dev set to manually installed. libjs-sphinxdoc is already the newest version (9.1.0-7). libjs-sphinxdoc set to manually installed. libhdf5-hl-320 is already the newest version (2.2.0+repack-4). libhdf5-hl-320 set to manually installed. libibmad5 is already the newest version (64.0-1). libibmad5 set to manually installed. libgl1 is already the newest version (1.7.0-3+b1). libgl1 set to manually installed. libjxl0.11 is already the newest version (0.11.2-5.1). libjxl0.11 set to manually installed. libkadm5clnt-mit12 is already the newest version (1.22.1-3). libkadm5clnt-mit12 set to manually installed. libjbig0 is already the newest version (2.1-6.1+b3). libjbig0 set to manually installed. libibumad3 is already the newest version (64.0-1). libibumad3 set to manually installed. libisl23 is already the newest version (0.28-1). libisl23 set to manually installed. libhogweed6t64 is already the newest version (3.10.2-1+b1). libhogweed6t64 set to manually installed. libheif-plugin-dav1d is already the newest version (1.23.2-1). libheif-plugin-dav1d set to manually installed. libgtk-3-0t64 is already the newest version (3.24.52-1). libgtk-3-0t64 set to manually installed. libharfbuzz0b is already the newest version (12.3.2-2+b2). libharfbuzz0b set to manually installed. libjpeg62-turbo is already the newest version (1:3.1.3-4). libjpeg62-turbo set to manually installed. libfontconfig1 is already the newest version (2.17.1-5). libfontconfig1 set to manually installed. libgomp1 is already the newest version (16.2.0-1). libgomp1 set to manually installed. libgfortran5 is already the newest version (16.2.0-1). libgfortran5 set to manually installed. libglut3.12 is already the newest version (3.4.0-6+b2). libglut3.12 set to manually installed. libevent-core-2.1-7t64 is already the newest version (2.1.13-stable-1). libevent-core-2.1-7t64 set to manually installed. libgcc-s1 is already the newest version (16.2.0-1). libpsl5t64 is already the newest version (0.23.3-1). libpsl5t64 set to manually installed. libpango-1.0-0 is already the newest version (1.58.0-1). libpango-1.0-0 set to manually installed. libpython3.14-dev is already the newest version (3.14.7-1). libpython3.14-dev set to manually installed. libpcre2-32-0 is already the newest version (10.48-2). libpcre2-32-0 set to manually installed. libpython3-dev is already the newest version (3.14.7-3). libpython3-dev set to manually installed. liblerc4 is already the newest version (4.2.0+ds-1). liblerc4 set to manually installed. libpython3-all-dev is already the newest version (3.14.7-3). libpython3-all-dev set to manually installed. libllvm21 is already the newest version (1:21.1.8-10). libllvm21 set to manually installed. libnotify4 is already the newest version (0.8.8-1+b1). libnotify4 set to manually installed. libpkgconf7 is already the newest version (2.5.1-4). libpkgconf7 set to manually installed. libpixman-1-0 is already the newest version (0.46.4-1+b2). libpixman-1-0 set to manually installed. libqt5test5t64 is already the newest version (5.15.19+dfsg-4). libqt5test5t64 set to manually installed. libnettle8t64 is already the newest version (3.10.2-1+b1). libnettle8t64 set to manually installed. libperl5.42 is already the newest version (5.42.3-1). libperl5.42 set to manually installed. libmmdb2-dev is already the newest version (2.0.22-1+b3). libmmdb2-dev set to manually installed. libpython3.14-stdlib is already the newest version (3.14.7-1). libpython3.14-stdlib set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.24.0-1). libngtcp2-crypto-gnutls8 set to manually installed. libnghttp2-dev is already the newest version (1.70.0-1). libnghttp2-dev set to manually installed. libmagic-mgc is already the newest version (1:5.47-4). libmagic-mgc set to manually installed. libncursesw6 is already the newest version (6.6+20260608-2). libncursesw6 set to manually installed. libopengl-dev is already the newest version (1.7.0-3+b1). libopengl-dev set to manually installed. libqt5gui5t64 is already the newest version (5.15.19+dfsg-4). libqt5gui5t64 set to manually installed. liblcms2-2 is already the newest version (2.19.1-1). liblcms2-2 set to manually installed. libopus0 is already the newest version (1.6.1-1+b1). libopus0 set to manually installed. libopengl0 is already the newest version (1.7.0-3+b1). libopengl0 set to manually installed. liblapack3 is already the newest version (3.12.1-8). liblapack3 set to manually installed. libnghttp2-14 is already the newest version (1.70.0-1). libnghttp2-14 set to manually installed. libqt5xml5t64 is already the newest version (5.15.19+dfsg-4). libqt5xml5t64 set to manually installed. libmd4c0 is already the newest version (0.5.3-1). libmd4c0 set to manually installed. libmd0 is already the newest version (1.2.0-2). libpciaccess0 is already the newest version (0.19-2). libpciaccess0 set to manually installed. libqhull-r8.0 is already the newest version (2020.2-9). libqhull-r8.0 set to manually installed. libpython3.14-minimal is already the newest version (3.14.7-1). libpython3.14-minimal set to manually installed. libqt5widgets5t64 is already the newest version (5.15.19+dfsg-4). libqt5widgets5t64 set to manually installed. libmtdev1t64 is already the newest version (1.1.7-1+b2). libmtdev1t64 set to manually installed. libpython3-stdlib is already the newest version (3.14.7-3). libpython3-stdlib set to manually installed. libngtcp2-dev is already the newest version (1.24.0-1). libngtcp2-dev set to manually installed. libpopt0 is already the newest version (1.19+dfsg-2+b2). libpopt0 set to manually installed. libpam-runtime is already the newest version (1.7.0-8). libpam-systemd is already the newest version (262~rc1-2). libpam-systemd set to manually installed. libpng16-16t64 is already the newest version (1.6.58-1). libpng16-16t64 set to manually installed. libngtcp2-crypto-ossl-dev is already the newest version (1.24.0-1). libngtcp2-crypto-ossl-dev set to manually installed. liblz4-1 is already the newest version (1.10.0-10). liblz4-1 set to manually installed. libpython3.14 is already the newest version (3.14.7-1). libpython3.14 set to manually installed. liblzma5 is already the newest version (5.8.3-1). liblerc-dev is already the newest version (4.2.0+ds-1). liblerc-dev set to manually installed. libmount1 is already the newest version (2.42.2-4). liblsan0 is already the newest version (16.2.0-1). liblsan0 set to manually installed. libp11-kit-dev is already the newest version (0.26.5-1). libp11-kit-dev set to manually installed. libmunge2 is already the newest version (0.5.18-1). libmunge2 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-8). liblz4-dev is already the newest version (1.10.0-10). liblz4-dev set to manually installed. libqt5help5 is already the newest version (5.15.19-2). libqt5help5 set to manually installed. libkrb5-3 is already the newest version (1.22.1-3). libkrb5-3 set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. liblzf1 is already the newest version (3.6-4+b4). liblzf1 set to manually installed. libmp3lame0 is already the newest version (4.0-1). libmp3lame0 set to manually installed. libpam-modules is already the newest version (1.7.0-8). libkdb5-10t64 is already the newest version (1.22.1-3). libkdb5-10t64 set to manually installed. libpam0g is already the newest version (1.7.0-8). libldap-dev is already the newest version (2.6.14+dfsg-2). libldap-dev set to manually installed. libpcre2-16-0 is already the newest version (10.48-2). libpcre2-16-0 set to manually installed. libpsl-dev is already the newest version (0.23.3-1). libpsl-dev set to manually installed. libkrb5-dev is already the newest version (1.22.1-3). libkrb5-dev set to manually installed. libqt5dbus5t64 is already the newest version (5.15.19+dfsg-4). libqt5dbus5t64 set to manually installed. libnetcdf22 is already the newest version (1:4.10.1-1+b1). libnetcdf22 set to manually installed. libpangoft2-1.0-0 is already the newest version (1.58.0-1). libpangoft2-1.0-0 set to manually installed. libpangocairo-1.0-0 is already the newest version (1.58.0-1). libpangocairo-1.0-0 set to manually installed. libmmdb2-0 is already the newest version (2.0.22-1+b3). libmmdb2-0 set to manually installed. libngtcp2-16 is already the newest version (1.24.0-1). libngtcp2-16 set to manually installed. libonig5 is already the newest version (6.9.10-1+b1). libonig5 set to manually installed. libqt5printsupport5t64 is already the newest version (5.15.19+dfsg-4). libqt5printsupport5t64 set to manually installed. libqt5opengl5t64 is already the newest version (5.15.19+dfsg-4). libqt5opengl5t64 set to manually installed. libp11-kit0 is already the newest version (0.26.5-1). libp11-kit0 set to manually installed. libogg0 is already the newest version (1.3.6-2+b1). libogg0 set to manually installed. libopenjp2-7 is already the newest version (2.5.4-1.1). libopenjp2-7 set to manually installed. libngtcp2-crypto-ossl0 is already the newest version (1.24.0-1). libngtcp2-crypto-ossl0 set to manually installed. libnl-3-200 is already the newest version (3.12.0-2+b1). libnl-3-200 set to manually installed. libpulse0 is already the newest version (17.0+dfsg1-3). libpulse0 set to manually installed. libnghttp3-dev is already the newest version (1.17.0-1). libnghttp3-dev set to manually installed. libqt5core5t64 is already the newest version (5.15.19+dfsg-4). libqt5core5t64 set to manually installed. libpmix2t64 is already the newest version (6.1.1~rc2-4). libpmix2t64 set to manually installed. liblzma-dev is already the newest version (5.8.3-1). liblzma-dev set to manually installed. libqt5sql5t64 is already the newest version (5.15.19+dfsg-4). libqt5sql5t64 set to manually installed. libmpg123-0t64 is already the newest version (1.33.7-1). libmpg123-0t64 set to manually installed. libkrb5support0 is already the newest version (1.22.1-3). libkrb5support0 set to manually installed. libnl-route-3-200 is already the newest version (3.12.0-2+b1). libnl-route-3-200 set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libpcre2-8-0 is already the newest version (10.48-2). libldap2 is already the newest version (2.6.14+dfsg-2). libldap2 set to manually installed. libproc2-1 is already the newest version (2:4.0.7-1). libproc2-1 set to manually installed. libkadm5srv-mit12 is already the newest version (1.22.1-3). libkadm5srv-mit12 set to manually installed. libqt5network5t64 is already the newest version (5.15.19+dfsg-4). libqt5network5t64 set to manually installed. libopenmpi40 is already the newest version (5.0.10-5). libopenmpi40 set to manually installed. libmagic1t64 is already the newest version (1:5.47-4). libmagic1t64 set to manually installed. libqt5designer5 is already the newest version (5.15.19-2). libqt5designer5 set to manually installed. libnghttp3-9 is already the newest version (1.17.0-1). libnghttp3-9 set to manually installed. libnuma1 is already the newest version (2.0.19-1+b2). libnuma1 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6+b2). libkeyutils1 set to manually installed. libunistring-dev is already the newest version (1.4.2-1). libunistring-dev set to manually installed. libxcb1-dev is already the newest version (1.17.0-2+b2). libxcb1-dev set to manually installed. libsensors5 is already the newest version (1:3.6.2-2+b2). libsensors5 set to manually installed. libxcb1 is already the newest version (1.17.0-2+b2). libxcb1 set to manually installed. librtmp1 is already the newest version (2.6-1). librtmp1 set to manually installed. libxcb-icccm4 is already the newest version (0.4.2-1+b2). libxcb-icccm4 set to manually installed. libx11-6 is already the newest version (2:1.8.13-1). libx11-6 set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libxcb-xfixes0 is already the newest version (1.17.0-2+b2). libxcb-xfixes0 set to manually installed. libvorbis0a is already the newest version (1.3.7-3+b2). libvorbis0a set to manually installed. libx11-data is already the newest version (2:1.8.13-1). libx11-data set to manually installed. libwacom9 is already the newest version (2.18.0-1). libwacom9 set to manually installed. libselinux1 is already the newest version (3.11-2). libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. librav1e0.8 is already the newest version (0.8.1-11). librav1e0.8 set to manually installed. libssl-dev is already the newest version (3.6.4-1). libssl-dev set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. libwebp-dev is already the newest version (1.5.0-0.1+b2). libwebp-dev set to manually installed. libssl3t64 is already the newest version (3.6.4-1). libtiff6 is already the newest version (4.7.2-1). libtiff6 set to manually installed. libwacom-common is already the newest version (2.18.0-1). libwacom-common set to manually installed. libxdamage1 is already the newest version (1:1.1.7-1+b1). libxdamage1 set to manually installed. libstdc++-16-dev is already the newest version (16.2.0-1). libstdc++-16-dev set to manually installed. libx11-xcb1 is already the newest version (2:1.8.13-1). libx11-xcb1 set to manually installed. libsndfile1 is already the newest version (1.2.2-4+b1). libsndfile1 set to manually installed. libxcomposite1 is already the newest version (1:0.4.6-1+b2). libxcomposite1 set to manually installed. libxcb-shape0 is already the newest version (1.17.0-2+b2). libxcb-shape0 set to manually installed. libtool is already the newest version (2.6.2-2). libtool set to manually installed. libvulkan1 is already the newest version (1.4.357.0-1). libvulkan1 set to manually installed. libxcb-render-util0 is already the newest version (0.3.10-1+b2). libxcb-render-util0 set to manually installed. libtsan2 is already the newest version (16.2.0-1). libtsan2 set to manually installed. libtcl8.6 is already the newest version (8.6.18+dfsg-1). libtcl8.6 set to manually installed. libssm2 is already the newest version (1.4.0-2+b4). libssm2 set to manually installed. libwebpdecoder3 is already the newest version (1.5.0-0.1+b2). libwebpdecoder3 set to manually installed. libraqm0 is already the newest version (0.10.5-1). libraqm0 set to manually installed. libx11-dev is already the newest version (2:1.8.13-1). libx11-dev set to manually installed. libtiff-dev is already the newest version (4.7.2-1). libtiff-dev set to manually installed. libxcb-keysyms1 is already the newest version (0.4.1-1+b2). libxcb-keysyms1 set to manually installed. libxau-dev is already the newest version (1:1.0.11-1+b2). libxau-dev set to manually installed. libquadmath0 is already the newest version (16.2.0-1). libquadmath0 set to manually installed. libtinfo6 is already the newest version (6.6+20260608-2). libtiffxx6 is already the newest version (4.7.2-1). libtiffxx6 set to manually installed. libstdc++6 is already the newest version (16.2.0-1). libstdc++6 set to manually installed. libuuid1 is already the newest version (2.42.2-4). libwxbase3.2-1t64 is already the newest version (3.2.11+dfsg-1). libwxbase3.2-1t64 set to manually installed. libsharpyuv0 is already the newest version (1.5.0-0.1+b2). libsharpyuv0 set to manually installed. libxcursor1 is already the newest version (1:1.2.3-1+b2). libxcursor1 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-11). libsasl2-2 set to manually installed. libxcb-present0 is already the newest version (1.17.0-2+b2). libxcb-present0 set to manually installed. libxcb-glx0 is already the newest version (1.17.0-2+b2). libxcb-glx0 set to manually installed. libwxgtk-gl3.2-1t64 is already the newest version (3.2.11+dfsg-1). libwxgtk-gl3.2-1t64 set to manually installed. libxcb-render0 is already the newest version (1.17.0-2+b2). libxcb-render0 set to manually installed. libwxgtk3.2-1t64 is already the newest version (3.2.11+dfsg-1). libwxgtk3.2-1t64 set to manually installed. libseccomp2 is already the newest version (2.6.1-1). libseccomp2 set to manually installed. libwebp7 is already the newest version (1.5.0-0.1+b2). libwebp7 set to manually installed. libsharpyuv-dev is already the newest version (1.5.0-0.1+b2). libsharpyuv-dev set to manually installed. libvorbisenc2 is already the newest version (1.3.7-3+b2). libvorbisenc2 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-6). libssh2-1t64 set to manually installed. libsm6 is already the newest version (2:1.2.6-1+b2). libsm6 set to manually installed. librsvg2-2 is already the newest version (2.62.1+dfsg-1). librsvg2-2 set to manually installed. libunbound8 is already the newest version (1.26.0-2). libunbound8 set to manually installed. libwayland-egl1 is already the newest version (1.26.0-1). libwayland-egl1 set to manually installed. librdmacm1t64 is already the newest version (64.0-1). librdmacm1t64 set to manually installed. libtasn1-6 is already the newest version (4.21.0-2+b1). libtasn1-6 set to manually installed. libwayland-cursor0 is already the newest version (1.26.0-1). libwayland-cursor0 set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-11). libsasl2-modules-db set to manually installed. libsvtav1enc4 is already the newest version (4.1.0+dfsg-1). libsvtav1enc4 set to manually installed. libtk8.6 is already the newest version (8.6.18-1). libtk8.6 set to manually installed. libwebpdemux2 is already the newest version (1.5.0-0.1+b2). libwebpdemux2 set to manually installed. libssm-dev is already the newest version (1.4.0-2+b4). libssm-dev set to manually installed. libxcb-xinerama0 is already the newest version (1.17.0-2+b2). libxcb-xinerama0 set to manually installed. libsz2 is already the newest version (1.1.7-1). libsz2 set to manually installed. libucx0 is already the newest version (1.22.0-1). libucx0 set to manually installed. libsensors-config is already the newest version (1:3.6.2-2). libsensors-config set to manually installed. libudev1 is already the newest version (262~rc1-2). libsqlite3-0 is already the newest version (3.53.4-2). libsqlite3-0 set to manually installed. libxcb-randr0 is already the newest version (1.17.0-2+b2). libxcb-randr0 set to manually installed. libthai-data is already the newest version (0.1.30-3). libthai-data set to manually installed. librtmp-dev is already the newest version (2.6-1). librtmp-dev set to manually installed. libxcb-dri3-0 is already the newest version (1.17.0-2+b2). libxcb-dri3-0 set to manually installed. libxcb-xkb1 is already the newest version (1.17.0-2+b2). libxcb-xkb1 set to manually installed. libwebpmux3 is already the newest version (1.5.0-0.1+b2). libwebpmux3 set to manually installed. libucc1 is already the newest version (1.8.0-2). libucc1 set to manually installed. libxcb-xinput0 is already the newest version (1.17.0-2+b2). libxcb-xinput0 set to manually installed. libsdl3-0 is already the newest version (3.4.14+ds-2). libsdl3-0 set to manually installed. libxcb-shm0 is already the newest version (1.17.0-2+b2). libxcb-shm0 set to manually installed. libsmartcols1 is already the newest version (2.42.2-4). libtasn1-6-dev is already the newest version (4.21.0-2+b1). libtasn1-6-dev set to manually installed. libxau6 is already the newest version (1:1.0.11-1+b2). libxau6 set to manually installed. libxcb-image0 is already the newest version (0.4.0-2+b3). libxcb-image0 set to manually installed. libsystemd0 is already the newest version (262~rc1-2). libsdl2-2.0-0 is already the newest version (2.32.70+ds-2). libsdl2-2.0-0 set to manually installed. libsframe3 is already the newest version (2.47-2). libsframe3 set to manually installed. libwayland-client0 is already the newest version (1.26.0-1). libwayland-client0 set to manually installed. libxcb-util1 is already the newest version (0.4.1-1+b2). libxcb-util1 set to manually installed. libthai0 is already the newest version (0.1.30-3). libthai0 set to manually installed. libsystemd-shared is already the newest version (262~rc1-2). libsystemd-shared set to manually installed. libssh2-1-dev is already the newest version (1.11.1-6). libssh2-1-dev set to manually installed. libxcb-sync1 is already the newest version (1.17.0-2+b2). libxcb-sync1 set to manually installed. libubsan1 is already the newest version (16.2.0-1). libubsan1 set to manually installed. libxdmcp-dev is already the newest version (1:1.1.5-2+b1). libxdmcp-dev set to manually installed. python-matplotlib-data is already the newest version (3.10.9+dfsg1-1). python-matplotlib-data set to manually installed. python3-lxml is already the newest version (6.1.0-1). python3-lxml set to manually installed. python3-kiwisolver is already the newest version (1.5.0-2). python3-kiwisolver set to manually installed. libxtst6 is already the newest version (2:1.2.5-1+b2). libxtst6 set to manually installed. python3-freetype is already the newest version (2.5.1-3). python3-freetype set to manually installed. python3-attr is already the newest version (26.1.0-1). python3-attr set to manually installed. libxkbcommon0 is already the newest version (1.13.1-1). libxkbcommon0 set to manually installed. python3-dev is already the newest version (3.14.7-3). python3-dev set to manually installed. python3-editables is already the newest version (0.5-3). python3-editables set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. nettle-dev is already the newest version (3.10.2-1+b1). nettle-dev set to manually installed. python3-h5py is already the newest version (3.16.0-6). python3-h5py set to manually installed. libxxhash-dev is already the newest version (0.8.3-2+b2). libxxhash-dev set to manually installed. python3-hatchling is already the newest version (1.30.1-2). python3-hatchling set to manually installed. python3-numpy is already the newest version (1:2.4.6+ds-4). python3-numpy set to manually installed. python3-dateutil is already the newest version (2.9.0-5). python3-dateutil set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. mawk is already the newest version (1.3.4.20260302-1). python3-certifi is already the newest version (2026.7.22+ds-1). python3-certifi set to manually installed. python3-chardet is already the newest version (5.2.0+dfsg-2). python3-chardet set to manually installed. python3-cairo is already the newest version (1.29.0-1). python3-cairo set to manually installed. pkgconf-bin is already the newest version (2.5.1-4). pkgconf-bin set to manually installed. libxml2-16 is already the newest version (2.15.3+dfsg-1). libxml2-16 set to manually installed. libzstd-dev is already the newest version (1.5.7+dfsg-4). libzstd-dev set to manually installed. python3-fonttools is already the newest version (4.62.1-7). python3-fonttools set to manually installed. libxrandr2 is already the newest version (2:1.5.4-1+b4). libxrandr2 set to manually installed. ocl-icd-libopencl1 is already the newest version (2.3.4-1+b1). ocl-icd-libopencl1 set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-2+b1). libxdmcp6 set to manually installed. libxrender1 is already the newest version (1:0.9.12-1+b2). libxrender1 set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. procps is already the newest version (2:4.0.7-1). procps set to manually installed. python3-all-dev is already the newest version (3.14.7-3). python3-all-dev set to manually installed. python3-legacy-cgi is already the newest version (2.6.4-3). python3-legacy-cgi set to manually installed. pybind11-dev is already the newest version (3.0.1-3). pybind11-dev set to manually installed. python3 is already the newest version (3.14.7-3). python3 set to manually installed. python3-charset-normalizer is already the newest version (3.4.7-2). python3-charset-normalizer set to manually installed. libxxhash0 is already the newest version (0.8.3-2+b2). libxxhash0 set to manually installed. pkgconf is already the newest version (2.5.1-4). pkgconf set to manually installed. ncurses-base is already the newest version (6.6+20260608-2). python3-contourpy is already the newest version (1.3.3-2). python3-contourpy set to manually installed. libxkbcommon-x11-0 is already the newest version (1.13.1-1). libxkbcommon-x11-0 set to manually installed. python3-inflect is already the newest version (7.5.0-2). python3-inflect set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b4). libxext6 set to manually installed. python3-brotli is already the newest version (1.2.0-4). python3-brotli set to manually installed. libxfixes3 is already the newest version (1:6.0.0-2+b5). libxfixes3 set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. perl is already the newest version (5.42.3-1). perl set to manually installed. mesa-libgallium is already the newest version (26.1.6-1). mesa-libgallium set to manually installed. python3-build is already the newest version (1.5.1-1). python3-build set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-4). pybuild-plugin-pyproject is already the newest version (7.20260623). pybuild-plugin-pyproject set to manually installed. python3-flexparser is already the newest version (0.4-2). python3-flexparser set to manually installed. libz3-4 is already the newest version (4.13.3-1.1). libz3-4 set to manually installed. ncurses-bin is already the newest version (6.6+20260608-2). m4 is already the newest version (1.4.21-1). m4 set to manually installed. openssl is already the newest version (3.6.4-1). openssl set to manually installed. python3-mrcfile is already the newest version (1.5.4-4). python3-mrcfile set to manually installed. netbase is already the newest version (6.6). netbase set to manually installed. pymol-data is already the newest version (3.1.0+dfsg-1). pymol-data set to manually installed. libxslt1.1 is already the newest version (1.1.45-0.1). libxslt1.1 set to manually installed. perl-base is already the newest version (5.42.3-1). libxxf86vm1 is already the newest version (1:1.1.4-2+b1). libxxf86vm1 set to manually installed. libxnvctrl0 is already the newest version (535.171.04-1+b3). libxnvctrl0 set to manually installed. python3-all is already the newest version (3.14.7-3). python3-all set to manually installed. python3-installer is already the newest version (1.0.1+dfsg1-2). python3-installer set to manually installed. pci.ids is already the newest version (0.0~2026.07.21-1). pci.ids set to manually installed. perl-modules-5.42 is already the newest version (5.42.3-1). perl-modules-5.42 set to manually installed. python3-flexcache is already the newest version (0.3-3). python3-flexcache set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. python3-h5py-serial is already the newest version (3.16.0-6). python3-h5py-serial set to manually installed. openssl-provider-legacy is already the newest version (3.6.4-1). python3-cycler is already the newest version (0.12.1-3). python3-cycler set to manually installed. libzopfli1 is already the newest version (1.0.3-3). libzopfli1 set to manually installed. python3-natsort is already the newest version (8.4.0-2). python3-natsort set to manually installed. python3-more-itertools is already the newest version (11.1.0-2). python3-more-itertools set to manually installed. libxft2 is already the newest version (2.3.6-1+b5). libxft2 set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. python3-msgpack is already the newest version (1.1.2-4). python3-msgpack set to manually installed. python3-lz4 is already the newest version (4.4.5+dfsg-1). python3-lz4 set to manually installed. libxi6 is already the newest version (2:1.8.3-1). libxi6 set to manually installed. libyaml-0-2 is already the newest version (0.2.5-2+b1). libyaml-0-2 set to manually installed. python3-hdf5plugin is already the newest version (5.1.0-1). python3-hdf5plugin set to manually installed. libxss1 is already the newest version (1:1.2.3-1+b4). libxss1 set to manually installed. libxres1 is already the newest version (2:1.2.1-2). libxres1 set to manually installed. python3-minimal is already the newest version (3.14.7-3). python3-minimal set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. linux-libc-dev is already the newest version (7.1.12-1). linux-libc-dev set to manually installed. python3-mpmath is already the newest version (1.4.1-3). python3-mpmath set to manually installed. python3-matplotlib is already the newest version (3.10.9+dfsg1-1). python3-matplotlib set to manually installed. python3-idna is already the newest version (3.19-1). python3-idna set to manually installed. libxshmfence1 is already the newest version (1.3.3-1+b2). libxshmfence1 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. python3-decorator is already the newest version (5.3.1-1). python3-decorator set to manually installed. libyuv0 is already the newest version (0.0.1959.20260817-1). libyuv0 set to manually installed. libxinerama1 is already the newest version (2:1.1.4-3+b5). libxinerama1 set to manually installed. python3-biopython is already the newest version (1.88+dfsg-2). python3-biopython set to manually installed. w3c-sgml-lib is already the newest version (1.3-3). w3c-sgml-lib set to manually installed. python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. python3.14-dev is already the newest version (3.14.7-1). python3.14-dev set to manually installed. python3-wheel is already the newest version (0.47.0-1). python3-wheel set to manually installed. python3-sympy is already the newest version (1.14.0-4). python3-sympy set to manually installed. xfonts-utils is already the newest version (1:7.7+7). xfonts-utils set to manually installed. python3-opengl is already the newest version (3.1.10+dfsg-1). python3-opengl set to manually installed. python3-pyparsing is already the newest version (3.3.2-2). python3-pyparsing set to manually installed. sfftw2 is already the newest version (2.1.5-8). sfftw2 set to manually installed. python3-six is already the newest version (1.17.0-3). python3-six set to manually installed. python3-pathspec is already the newest version (1.1.1-2). python3-pathspec set to manually installed. python3-pint is already the newest version (0.25.3-4). python3-pint set to manually installed. python3-pymol is already the newest version (3.1.0+dfsg-1+b3). python3-pymol set to manually installed. python3-zopfli is already the newest version (0.4.3-2). python3-zopfli set to manually installed. x11proto-dev is already the newest version (2025.1-1). x11proto-dev set to manually installed. sphinx-rtd-theme-common is already the newest version (3.1.0+dfsg-2). sphinx-rtd-theme-common set to manually installed. python3-procrunner is already the newest version (2.3.3-2). python3-procrunner set to manually installed. tzdata is already the newest version (2026c-1). tzdata set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. tar is already the newest version (1.35+dfsg-5). sgml-base is already the newest version (1.31+nmu1). sgml-base set to manually installed. python3-pyqt5.qtopengl is already the newest version (5.15.11+dfsg-6). python3-pyqt5.qtopengl set to manually installed. python3-pyproject-hooks is already the newest version (1.2.0-2). python3-pyproject-hooks set to manually installed. shared-mime-info is already the newest version (2.4-5+b3). shared-mime-info set to manually installed. python3-numpy-dev is already the newest version (1:2.4.6+ds-4). python3-numpy-dev set to manually installed. python3-requests is already the newest version (2.34.2-1). python3-requests set to manually installed. x11-common is already the newest version (1:7.7+26). x11-common set to manually installed. python3.14 is already the newest version (3.14.7-1). python3.14 set to manually installed. python3-pycbf is already the newest version (0.9.7+dfsg1-5.1+b2). python3-pycbf set to manually installed. python3-trove-classifiers is already the newest version (2026.1.14.14-1). python3-trove-classifiers set to manually installed. systemd-sysv is already the newest version (262~rc1-2). systemd-sysv set to manually installed. python3-packaging is already the newest version (26.2-2). python3-packaging set to manually installed. python3-ordered-set is already the newest version (4.1.0-1). python3-ordered-set set to manually installed. scons is already the newest version (4.10.1+dfsg-2). scons set to manually installed. python3-pil is already the newest version (12.3.0-1). python3-pil set to manually installed. sed is already the newest version (4.9-3). xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. sysvinit-utils is already the newest version (3.18-1). python3-pytest is already the newest version (9.1.1-1). python3-pytest set to manually installed. python3-uharfbuzz is already the newest version (0.53.3-1). python3-uharfbuzz set to manually installed. python3-pyqt5.sip is already the newest version (12.19.0-1). python3-pyqt5.sip set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). xorg-sgml-doctools is already the newest version (1:1.12.1-1). xorg-sgml-doctools set to manually installed. systemd is already the newest version (262~rc1-2). systemd set to manually installed. python3-yaml is already the newest version (6.0.3-1). python3-yaml set to manually installed. python3-tqdm is already the newest version (4.70.0-1). python3-tqdm set to manually installed. xml-core is already the newest version (0.21). xml-core set to manually installed. python3-pip is already the newest version (26.1.2+dfsg-1). python3-pip set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. unicode-data is already the newest version (17.0.0-2). unicode-data set to manually installed. python3.14-minimal is already the newest version (3.14.7-1). python3.14-minimal set to manually installed. rsync is already the newest version (3.5.0+ds1-2). rsync set to manually installed. python3-pil.imagetk is already the newest version (12.3.0-1). python3-pil.imagetk set to manually installed. xtrans-dev is already the newest version (1.6.0-1). xtrans-dev set to manually installed. python3-tk is already the newest version (3.14.7-3). python3-tk set to manually installed. python3-setuptools is already the newest version (80.9.0-2). python3-setuptools set to manually installed. python3-scipy is already the newest version (1.17.1-5). python3-scipy set to manually installed. python3-wxgtk4.0 is already the newest version (4.2.4+dfsg-1). python3-wxgtk4.0 set to manually installed. python3-nxmx is already the newest version (0.0.7-1). python3-nxmx set to manually installed. python3-pyqt5 is already the newest version (5.15.11+dfsg-6). python3-pyqt5 set to manually installed. python3-pkg-resources is already the newest version (80.9.0-2). python3-pkg-resources set to manually installed. python3-platformdirs is already the newest version (4.10.0-1). python3-platformdirs set to manually installed. python3-typeguard is already the newest version (4.4.4-3). python3-typeguard set to manually installed. python3-urllib3 is already the newest version (2.7.0-3). python3-urllib3 set to manually installed. xfonts-encodings is already the newest version (1:1.0.4-2.2). xfonts-encodings set to manually installed. python3-typing-extensions is already the newest version (4.16.0-5). python3-typing-extensions set to manually installed. python3-pygments is already the newest version (2.20.0+dfsg-2). python3-pygments set to manually installed. python3.14-tk is already the newest version (3.14.7-1). python3.14-tk set to manually installed. util-linux is already the newest version (2.42.2-4). python3-psutil is already the newest version (7.1.0-1). python3-psutil set to manually installed. sfftw-dev is already the newest version (2.1.5-8). sfftw-dev set to manually installed. python3-rlpycairo is already the newest version (0.3.0-4). python3-rlpycairo set to manually installed. xkb-data is already the newest version (2.48-1). xkb-data set to manually installed. python3-ufolib2 is already the newest version (0.18.1+dfsg1-2). python3-ufolib2 set to manually installed. python3-reportlab is already the newest version (5.0.0-4). python3-reportlab set to manually installed. The following NEW packages will be installed: pkg-config 127.0.0.1 - - [12/Sep/2026 07:32:27] "GET /./pkg-config_2.5.1-4_ppc64el.deb HTTP/1.1" 200 - 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 18.1 kB of archives. After this operation, 34.8 kB of additional disk space will be used. Get:1 http://localhost:34207 ./ pkg-config 2.5.1-4 [18.1 kB] Fetched 18.1 kB in 0s (1694 kB/s) Chrooting into /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky/ Selecting previously unselected package pkg-config:ppc64el. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64131 files and directories currently installed.) Preparing to unpack .../pkg-config_2.5.1-4_ppc64el.deb ... Unpacking pkg-config:ppc64el (2.5.1-4) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky/ Setting up pkg-config:ppc64el (2.5.1-4) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky (Reading database ... 64136 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.bUOGrOJkky... I: success in 186.9861 seconds Downloading packages 1to 100 out of 677 Downloading packages 101to 200 out of 677 Downloading packages 201to 300 out of 677 Downloading packages 301to 400 out of 677 Downloading packages 401to 500 out of 677 Downloading packages 501to 600 out of 677 Downloading packages 601to 677 out of 677 env --chdir=/srv/rebuilderd/tmp/rebuilderdjWrKcz/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1788314156 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildVdwKGZ/debrebuild.sbuildrc.nL5o8U3yVV6z sbuild --build=ppc64el --host=ppc64el --arch-any --no-arch-all --binNMU-changelog= cctbx (2026.7+ds2+~3.30.0+ds1-3+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for ppc64el; no source changes. * Rebuild with Python 3.14 only -- ppc64el Build Daemon (ppc64el-conova-01) Wed, 02 Sep 2026 01:55:56 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildVdwKGZ/debrebuild.tar.uQAS7Q93vKRM --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=cctbx-2026.7+ds2+~3.30.0+ds1 /srv/rebuilderd/tmp/rebuilderdjWrKcz/inputs/cctbx_2026.7+ds2+~3.30.0+ds1-3.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on osuosl6-ppc64el.debian.net +==============================================================================+ | cctbx 2026.7+ds2+~3.30.0+ds1-3+b1 (ppc64el) Sat, 12 Sep 2026 07:32:47 +0000 | +==============================================================================+ Package: cctbx Version: 2026.7+ds2+~3.30.0+ds1-3+b1 Source Version: 2026.7+ds2+~3.30.0+ds1-3 Distribution: unstable Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildVdwKGZ/debrebuild.tar.uQAS7Q93vKRM to /srv/rebuilderd/tmp/tmp.sbuild.87CW1om0lN... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sat, 12 Sep 2026 07:33:01 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdjWrKcz/inputs/cctbx_2026.7+ds2+~3.30.0+ds1-3.dsc exists in /srv/rebuilderd/tmp/rebuilderdjWrKcz/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 12 Sep 2026 07:33:03 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython, python3-editables, python3-h5py (>= 3), python3-hatchling, python3-hdf5plugin, python3-legacy-cgi, python3-matplotlib, python3-mrcfile, python3-msgpack, python3-natsort, python3-numpy, python3-nxmx, python3-ordered-set, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, python3-yaml, rsync, scons, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython, python3-editables, python3-h5py (>= 3), python3-hatchling, python3-hdf5plugin, python3-legacy-cgi, python3-matplotlib, python3-mrcfile, python3-msgpack, python3-natsort, python3-numpy, python3-nxmx, python3-ordered-set, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, python3-yaml, rsync, scons, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-IXrHhq/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sat, 12 Sep 2026 07:33:06 +0000 | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in amd64 arm64 armel armhf i386 loong64 ppc64 ppc64el riscv64 s390x) +------------------------------------------------------------------------------+ | Build environment Sat, 12 Sep 2026 07:33:07 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-powerpc64le-64k #1 SMP Debian 6.12.107-1 (2026-08-29) ppc64el (ppc64le) Toolchain package versions: binutils_2.47-2 dpkg-dev_1.23.7 g++-16_16.2.0-1 gcc-16_16.2.0-1 libc6-dev_2.43-4 libstdc++-16-dev_16.2.0-1 libstdc++6_16.2.0-1 linux-libc-dev_7.1.12-1 Package versions: adwaita-icon-theme_50.0-2 architecture-properties_0.2.6+b2 at-spi2-common_2.61.90-1 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3+b1 binutils_2.47-2 binutils-common_2.47-2 binutils-powerpc64le-linux-gnu_2.47-2 bsdextrautils_2.42.2-4 bubblewrap_0.12.0-1 build-essential_12.12 bzip2_1.0.8-6+b2 ca-certificates_20260816 comerr-dev_2.1-1.47.4-1+b1 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-1 cpp-16-powerpc64le-linux-gnu_16.2.0-1 cpp-powerpc64le-linux-gnu_4:16.1.0-3 dash_0.5.12-12 dbus_1.16.2-5+b1 dbus-bin_1.16.2-5+b1 dbus-daemon_1.16.2-5+b1 dbus-session-bus-common_1.16.2-5 dbus-system-bus-common_1.16.2-5 dbus-user-session_1.16.2-5+b1 dconf-gsettings-backend_0.49.0-4+b1 dconf-service_0.49.0-4+b1 debconf_1.5.92 debhelper_14.3 debianutils_5.24 dh-autoreconf_22 dh-exec_0.31 dh-python_7.20260623 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.17-1 fftw-dev_2.1.5-8 fftw2_2.1.5-8 file_1:5.47-4 findutils_4.11.0-2 fontconfig_2.17.1-5 fontconfig-config_2.17.1-5 fonts-dejavu-core_2.37-9 fonts-dejavu-extra_2.37-9 fonts-dejavu-mono_2.37-9 fonts-font-awesome_7.3.0+dfsg-1 fonts-font-awesome-legacy_6-3 fonts-lato_2.015-1 fonts-lyx_2.5.2-1 fonts-urw-base35_20200910-9 g++_4:16.1.0-3 g++-16_16.2.0-1 g++-16-powerpc64le-linux-gnu_16.2.0-1 g++-powerpc64le-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-1 gcc-16-base_16.2.0-1 gcc-16-powerpc64le-linux-gnu_16.2.0-1 gcc-powerpc64le-linux-gnu_4:16.1.0-3 gettext_1.0-3 gettext-base_1.0-3 glycin-loaders_2.1.5+ds-2 glycin-thumbnailers_2.1.5+ds-2 grep_3.12-1 groff-base_1.24.1-1 gtk-update-icon-cache_4.22.4+ds-1 gzip_1.14-1 hdf5-helpers_2.2.0+repack-4 hicolor-icon-theme_0.18-2 hostname_3.25 ibverbs-providers_64.0-1 init-system-helpers_1.69+nmu1 intltool-debian_0.35.0+20060710.6 jq_1.8.2-1 krb5-multidev_1.22.1-3 libabsl20260526_20260526.0-2 libacl1_2.4.0-1 libaec-dev_1.1.7-1 libaec0_1.1.7-1 libamd-comgr3_7.0.2+dfsg-3 libamdhip64-6_6.4.3-5 libann-cctbx-dev_1.1.2+doc-9+b1 libann-cctbx0_1.1.2+doc-9+b1 libantlr3c-3.4-0_3.4+dfsg-4+b3 libantlr3c-dev_3.4+dfsg-4+b3 libaom3_3.14.1-1 libapparmor1_4.1.8-2 libarchive-zip-perl_1.68-1 libasan8_16.2.0-1 libasound2-data_1.2.16.1-1 libasound2t64_1.2.16.1-1 libasyncns0_0.8-8 libatk-bridge2.0-0t64_2.61.90-1 libatk1.0-0t64_2.61.90-1 libatomic1_16.2.0-1 libatspi2.0-0t64_2.61.90-1 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libavahi-client3_0.8-18 libavahi-common-data_0.8-18 libavahi-common3_0.8-18 libavif16_1.4.2-1 libbinutils_2.47-2 libblas3_3.12.1-8 libblkid1_2.42.2-4 libboost-atomic1.90-dev_1.90.0-6.1 libboost-atomic1.90.0_1.90.0-6.1 libboost-chrono1.90-dev_1.90.0-6.1 libboost-chrono1.90.0_1.90.0-6.1 libboost-container1.90-dev_1.90.0-6.1 libboost-container1.90.0_1.90.0-6.1 libboost-date-time1.90-dev_1.90.0-6.1 libboost-date-time1.90.0_1.90.0-6.1 libboost-dev_1.90.0.2+nmu1 libboost-exception1.90-dev_1.90.0-6.1 libboost-graph1.90-dev_1.90.0-6.1 libboost-graph1.90.0_1.90.0-6.1 libboost-numpy-dev_1.90.0.2+nmu1 libboost-numpy1.90-dev_1.90.0-6.1 libboost-numpy1.90.0_1.90.0-6.1 libboost-python-dev_1.90.0.2+nmu1 libboost-python1.90-dev_1.90.0-6.1 libboost-python1.90.0_1.90.0-6.1 libboost-regex1.90-dev_1.90.0-6.1 libboost-regex1.90.0_1.90.0-6.1 libboost-serialization1.90-dev_1.90.0-6.1 libboost-serialization1.90.0_1.90.0-6.1 libboost-test1.90-dev_1.90.0-6.1 libboost-test1.90.0_1.90.0-6.1 libboost-thread-dev_1.90.0.2+nmu1 libboost-thread1.90-dev_1.90.0-6.1 libboost-thread1.90.0_1.90.0-6.1 libboost-timer-dev_1.90.0.2+nmu1 libboost-timer1.90-dev_1.90.0-6.1 libboost-timer1.90.0_1.90.0-6.1 libboost1.90-dev_1.90.0-6.1 libbrotli-dev_1.2.0-4 libbrotli1_1.2.0-4 libbsd0_0.12.2-3 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-4 libc-dev-bin_2.43-4 libc-gconv-modules-extra_2.43-4 libc6_2.43-4 libc6-dev_2.43-4 libcairo-gobject2_1.18.4-3+b1 libcairo2_1.18.4-3+b1 libcap-ng0_0.9.5-1 libcap2_1:2.78-1+b1 libcbf-dev_0.9.7+dfsg1-5.1+b2 libcbf1t64_0.9.7+dfsg1-5.1+b2 libcc1-0_16.2.0-1 libccp4-data_8.0.0-5 libccp4-dev_8.0.0-5+b1 libccp4c0t64_8.0.0-5+b1 libccp4f0t64_8.0.0-5+b1 libclang-common-21-dev_1:21.1.8-10 libclipper-dev_2.1.20201109-2+b4 libclipper2_2.1.20201109-2+b4 libcloudproviders0_0.4.1-1 libcolord2_1.4.8-3 libcom-err2_1.47.4-1+b1 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-2 libctf0_2.47-2 libcups2t64_2.4.18-1 libcurl4-gnutls_8.22.0~rc3-1 libcurl4-openssl-dev_8.22.0~rc3-1 libcurl4t64_8.22.0~rc3-1 libdatrie1_0.2.14-2 libdav1d7_1.5.4-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdbus-1-3_1.16.2-5+b1 libdconf1_0.49.0-4+b1 libde265-0_1.1.1-1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdecor-0-0_0.2.5-1+b1 libdeflate-dev_1.25-1 libdeflate0_1.25-1 libdouble-conversion3_3.4.0-1+b1 libdpkg-perl_1.23.7 libdrm-amdgpu1_2.4.134-3 libdrm-common_2.4.134-3 libdrm2_2.4.134-3 libedit2_3.1-20260512-1 libegl-mesa0_26.1.6-1 libegl1_1.7.0-3+b1 libeigen3-dev_3.4.0-5 libelf1t64_0.196-1 libepoxy0_1.5.10-2+b2 libesmtp6_1.1.0-3.2+b2 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scons_4.10.1+dfsg-2 sed_4.9-3 sensible-utils_0.0.26 sfftw-dev_2.1.5-8 sfftw2_2.1.5-8 sgml-base_1.31+nmu1 shared-mime-info_2.4-5+b3 sphinx-rtd-theme-common_3.1.0+dfsg-2 systemd_262~rc1-2 systemd-sysv_262~rc1-2 sysvinit-utils_3.18-1 tar_1.35+dfsg-5 tzdata_2026c-1 unicode-data_17.0.0-2 util-linux_2.42.2-4 w3c-sgml-lib_1.3-3 x11-common_1:7.7+26 x11proto-dev_2025.1-1 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+7 xkb-data_2.48-1 xml-core_0.21 xorg-sgml-doctools_1:1.12.1-1 xtrans-dev_1.6.0-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sat, 12 Sep 2026 07:33:07 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cctbx Binary: libcctbx0, libcctbx-dev, python3-cctbx Architecture: amd64 arm64 armel armhf i386 loong64 ppc64 ppc64el riscv64 s390x Version: 2026.7+ds2+~3.30.0+ds1-3 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Radostan Riedel , Roland Mas , Homepage: https://github.com/cctbx/cctbx_project Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/science-team/cctbx Vcs-Git: https://salsa.debian.org/science-team/cctbx.git Testsuite: autopkgtest Testsuite-Triggers: bitshuffle, g++, python3-all, python3-dials-data, python3-h5py, python3-pytest, python3-pytest-mock, python3-pytest-regressions, python3-yaml Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython , python3-editables, python3-h5py (>= 3) , python3-hatchling, python3-hdf5plugin , python3-legacy-cgi , python3-matplotlib , python3-mrcfile , python3-msgpack , python3-natsort , python3-numpy , python3-nxmx , python3-ordered-set , python3-pint , python3-pip, python3-procrunner , python3-psutil , python3-pycbf (>= 0.9.7+dfsg1-2~) , python3-pymol , python3-pytest , python3-requests , python3-scipy , python3-setuptools, python3-six, python3-tqdm , python3-wxgtk4.0 , python3-yaml , rsync, scons Package-List: libcctbx-dev deb libdevel optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x libcctbx0 deb libs optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x python3-cctbx deb python optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x Checksums-Sha1: d015af25fde6d377af2ca5169581fc80fdfe9543 402728 cctbx_2026.7+ds2+~3.30.0+ds1.orig-dxtbx.tar.xz 10d9b1e5c1b77fab82da30b95d19a91c4725b58f 105781860 cctbx_2026.7+ds2+~3.30.0+ds1.orig.tar.xz f78d098c376a225cb2eb495c7979620e5f21c3b7 419828 cctbx_2026.7+ds2+~3.30.0+ds1-3.debian.tar.xz Checksums-Sha256: 20ef2429e1f97fb191cbcca969803c16cb1406e0bc4be613c3771ae44ac8c80d 402728 cctbx_2026.7+ds2+~3.30.0+ds1.orig-dxtbx.tar.xz 9822e86efe99bedec27b425ed7fcc38d09d0ee1eedf536e012521a43ac09d718 105781860 cctbx_2026.7+ds2+~3.30.0+ds1.orig.tar.xz a982ca09b773e97fa3f94df396bffd196dd99a504c1bed0152ed1b7e31f9ef90 419828 cctbx_2026.7+ds2+~3.30.0+ds1-3.debian.tar.xz Files: 5dd7a8c1d0ca49219d5a4111c20a6f2b 402728 cctbx_2026.7+ds2+~3.30.0+ds1.orig-dxtbx.tar.xz c44088b2d1e2132481c98782ebe256dc 105781860 cctbx_2026.7+ds2+~3.30.0+ds1.orig.tar.xz 49d9e7a8661597fb23535b8d6247d743 419828 cctbx_2026.7+ds2+~3.30.0+ds1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEtBU2D1kett1zr/uD0w3s0lmTIvwFAmp7DqkACgkQ0w3s0lmT Ivy7tQ//V1ah7nsKGTByXzHB22XS/5LENjOZGB0J1nHLPMpgtoQ8AdWppo3ZeJH+ BEvZ30ArtaaHvkBpjP5TOtsTHgC/PnJk2sZR/q+EK614d8kYkJh33q0jp6k17HuD 0qldmu11lyydu9vdQKkKaj9AjJI9h8LyHVAF86SnVHSQkAkm67Ysw0rCgV7GZ4Rd +1EUbeN5SmWOUI/SfAIeeDqejLbx7hX4NEg2lozArcuLVAMnrwzQax1nks5iY0kn 73y+NO0dhHGCcK5bYCkBzqIv8uop/cJL2sssPVs7cXhA3piBvMe6hH2ysGbavaDp HBxazmBsJA0Ykozz1PpJCiKdQEoX0As0VoW7OIjaSC1WtoFRFnwW6e/gMiugzOJi Wn8DGGvuSJPfyZXCh1UhY1AsV0AHxfkRLzGU3bL0GADpyoebMhwajOAYEnIhIgYo Mk2Yu/qRRv2teanrw63M4o8cwehAZDnkJXCzP0mzKvEHso3tI+CcehIuZiWt2dBB /SXAtV11XV0eH4lMCz+4bcWHKD5QYXtKyjeucT3qp7ZsGApLygMXYtlJU9mM0Z2l UvvsZiyEfvcyqPl/ECXKAw7im8x15worWa0nL6AwrVzktFsOJkcxtpjRT4rcViPO xqi8dmtbBlsH1RTogB9TeotofQ8Ex+ykOnjvCyKOG8pTNfMNCTU= =CphW -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./cctbx_2026.7+ds2+~3.30.0+ds1-3.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./cctbx_2026.7+ds2+~3.30.0+ds1-3.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting cctbx in /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 dpkg-source: info: unpacking cctbx_2026.7+ds2+~3.30.0+ds1.orig.tar.xz dpkg-source: info: unpacking cctbx_2026.7+ds2+~3.30.0+ds1.orig-dxtbx.tar.xz dpkg-source: info: unpacking cctbx_2026.7+ds2+~3.30.0+ds1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying workaround_env_config.patch dpkg-source: info: applying boost_adaptbx.patch dpkg-source: info: applying reproducible-timestamp.patch dpkg-source: info: applying libtbx_env-per-python-version.patch dpkg-source: info: applying iotbx_with_system_libraries.patch dpkg-source: info: applying 0007-iotbx-mtz-load-ccp4-data-from-the-right-directory.patch dpkg-source: info: applying 0009-scons-soname.patch dpkg-source: info: applying 0010-fix-cbflib_adaptbx-compilation-with-the-system-cbfli.patch dpkg-source: info: applying 0011-dxtbx-use-the-system-libraries.patch dpkg-source: info: applying 0013-dxtbx-do-not-modify-the-HDF5_PLUGIN_PATH.patch dpkg-source: info: applying 0015-dxtbx-adapte-the-boost_python-link-name.patch dpkg-source: info: applying 0016-cctbx-avoid-FTBFS-when-cctbx-is-already-installed.patch dpkg-source: info: applying 0017-cctbx-do-not-hide-sign-comparison.patch dpkg-source: info: applying 0017-dxtbx-fix-for-unsigned-char-arch.patch dpkg-source: info: applying 0016-unactivated-ucif-compilation.patch dpkg-source: info: applying 0017-smtbx-save-the-generated-test-file-under-tmp.patch dpkg-source: info: applying 0018-iotbx-link-with-ccp4c-instead-of-ccp4io.patch dpkg-source: info: applying 0019-cbflib_adapter-link-cbf-private-with-cbf.patch dpkg-source: info: applying 0020-spotfinder-link-with-dxtbxspotfinder.patch dpkg-source: info: applying 0021-rstbx-link-with-ann_adaptor.patch dpkg-source: info: applying 0022-rstbx-link-rstbx_integration_ext-with-ann_adaptor.patch dpkg-source: info: applying 0023-rstbx-use-the-annself_excluded-namespace-from-ann-cc.patch dpkg-source: info: applying 0024-more-ann-ann-cctbx.patch dpkg-source: info: applying 0031-Add-missing-ctdint-header.patch dpkg-source: info: applying 0032-no-future.patch dpkg-source: info: applying 0027-Replace-unmaintained-orderedset-with-ordered_set.patch dpkg-source: info: applying 0028-Fix-pip-invocation.patch dpkg-source: info: applying 0028-dxtbx-force-pathlib-in-data-fetcher.patch dpkg-source: info: applying 0030_broken_six.patch dpkg-source: info: applying 0030-Stop-linking-against-boost_system.patch dpkg-source: info: applying hdf5-2.1.0.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 2026.7+ds2+~3.30.0+ds1-3+b1 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1788314156 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package cctbx dpkg-buildpackage: info: source version 2026.7+ds2+~3.30.0+ds1-3+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by ppc64el Build Daemon (ppc64el-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' cp -f debian/pyproject.toml pyproject.toml cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_clean -- --name cctbx pybuild --clean -i python{version} -p 3.14 --name cctbx --parallel=8 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_auto_clean --sourcedirectory=dxtbx -- --name dxtbx pybuild --clean -i python{version} -p 3.14 --name dxtbx --dir dxtbx --parallel=8 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; find . -name __pycache__ -type d -exec rm -rf {} \; rm -f pyproject.toml rm -rf annlib annlib_adaptbx rm -rf ccp4io ccp4io_adaptbx rm -rf gui_resources make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars debian/files rm -fr -- debian/libcctbx0/ debian/tmp/ debian/libcctbx-dev/ debian/python3-cctbx/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' cp -f debian/pyproject.toml pyproject.toml cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_configure -- --name cctbx pybuild --configure -i python{version} -p 3.14 --name cctbx --parallel=8 dh_auto_configure --sourcedirectory=dxtbx -- --name dxtbx pybuild --configure -i python{version} -p 3.14 --name dxtbx --dir dxtbx --parallel=8 dh_auto_configure -- --name cctbx -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ \ && {interpreter} /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif annlib ccp4io" pybuild --configure -i python{version} -p 3.14 --name cctbx -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ && {interpreter} /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif annlib ccp4io" --parallel=8 I: pybuild base:385: mkdir -p '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && cd '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif annlib ccp4io /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/libtbx/pkg_utils.py:18: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources Python: 3.14.7 "/usr/bin/python3.14" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Enable KOKKOS: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: False CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -lhdf5_serial command_version_suffix: None Relocatable paths anchored at: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_ Top-down list of all modules involved: xcif "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif" wxtbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/wxtbx" serialtbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/serialtbx" rstbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx" spotfinder "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder" mmtbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx" gltbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/gltbx" dxtbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx" iotbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx" smtbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx" ucif "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ucif" crys3d "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/crys3d" cctbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx" chiltbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/chiltbx" ccp4io+adaptbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ccp4io" "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ccp4io_adaptbx" cbflib_adaptbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx" annlib+adaptbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib" "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx" scitbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx" fable "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable" cma_es "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cma_es" omptbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/omptbx" boost+adaptbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost" "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx" tbxx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/tbxx" libtbx "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/libtbx" Creating files in build directory: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/libtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/crys3d/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/gltbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/wxtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/libtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/libtbx_refresh.py" Generating C++ header files in: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family" Generating C++ files in: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder Obtaining file:///build/reproducible-path/cctbx-2026.7%2Bds2%2B~3.30.0%2Bds1/dxtbx Checking if build backend supports build_editable: started Checking if build backend supports build_editable: finished with status 'done' Preparing editable metadata (pyproject.toml): started Preparing editable metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: dxtbx Building editable for dxtbx (pyproject.toml): started Building editable for dxtbx (pyproject.toml): finished with status 'done' Created wheel for dxtbx: filename=dxtbx-3.30.0-py3-none-any.whl size=6921 sha256=3b76350377028916ac7d6339dfcc2293e36e7e737b18f277d2407033bbcbd870 Stored in directory: /tmp/pip-ephem-wheel-cache-yft0p40f/wheels/c8/5f/5e/b022d3bf7514de6b10a135c149d5c88e52f8ed1c4f7d80764b Successfully built dxtbx Installing collected packages: dxtbx Successfully installed dxtbx-3.30.0 Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/cctbx/eltbx" Generating C++ files in: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/cctbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/crys3d/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/smtbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/gltbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/gltbx" fonts: 8x13 9x15 10x20 Processing: "/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/libtbx_refresh.py" Done. make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' # Python modules dh_auto_build -- --name cctbx pybuild --build -i python{version} -p 3.14 --name cctbx --parallel=8 I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx * Building wheel... running bdist_wheel running build running build_py creating build/lib/boost copying boost/__init__.py -> build/lib/boost copying boost/tuple.py -> build/lib/boost copying boost/optional.py -> build/lib/boost copying boost/std_pair.py -> build/lib/boost copying boost/rational.py -> build/lib/boost copying boost/python.py -> build/lib/boost creating build/lib/qttbx copying qttbx/__init__.py -> build/lib/qttbx copying qttbx/run_tests.py -> build/lib/qttbx copying qttbx/qt.py -> build/lib/qttbx copying qttbx/phil.py -> build/lib/qttbx creating build/lib/gltbx copying gltbx/wx_motion_on_tab.py -> build/lib/gltbx copying gltbx/fonts.py -> build/lib/gltbx copying gltbx/viewer_utils.py -> build/lib/gltbx copying gltbx/wx_viewer_leapmotion.py -> build/lib/gltbx copying gltbx/tst_ellipsoids.py -> build/lib/gltbx copying gltbx/wx_viewers_images.py -> build/lib/gltbx copying gltbx/quadrics.py -> build/lib/gltbx copying gltbx/tst_viewer_utils.py -> build/lib/gltbx copying gltbx/images.py -> build/lib/gltbx copying gltbx/__init__.py -> build/lib/gltbx copying gltbx/gl.py -> build/lib/gltbx copying gltbx/gl_managed.py -> build/lib/gltbx copying gltbx/generate_defines_bpl.py -> build/lib/gltbx copying gltbx/wx_viewer.py -> build/lib/gltbx copying gltbx/generate_fonts_ucs_cpp.py -> build/lib/gltbx copying gltbx/wx_viewer_example.py -> build/lib/gltbx copying gltbx/tst.py -> build/lib/gltbx copying gltbx/wx_ellipsoids_test.py -> build/lib/gltbx copying gltbx/libtbx_refresh.py -> build/lib/gltbx copying gltbx/run_tests.py -> build/lib/gltbx copying gltbx/util.py -> build/lib/gltbx copying gltbx/glu.py -> build/lib/gltbx copying gltbx/extract_opengl_specs.py -> build/lib/gltbx copying gltbx/wx_scene.py -> build/lib/gltbx copying gltbx/generate_functions_bpl.py -> build/lib/gltbx copying gltbx/tst_fonts.py -> build/lib/gltbx copying gltbx/wx_cube.py -> build/lib/gltbx creating build/lib/rstbx copying rstbx/__init__.py -> build/lib/rstbx copying rstbx/run_tests.py -> build/lib/rstbx copying rstbx/utils.py -> build/lib/rstbx creating build/lib/simtbx copying simtbx/__init__.py -> build/lib/simtbx copying simtbx/run_tests.py -> build/lib/simtbx creating build/lib/cbflib_adaptbx copying cbflib_adaptbx/__init__.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/exercise_compression.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/run_tests.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/copy_files.py -> build/lib/cbflib_adaptbx creating build/lib/fast_linalg copying fast_linalg/__init__.py -> build/lib/fast_linalg creating build/lib/wxtbx copying wxtbx/custom_restraints.py -> build/lib/wxtbx copying wxtbx/monitor.py -> build/lib/wxtbx copying wxtbx/qstat_view.py -> build/lib/wxtbx copying wxtbx/browser.py -> build/lib/wxtbx copying wxtbx/layout.py -> build/lib/wxtbx copying wxtbx/checklistctrl.py -> build/lib/wxtbx copying wxtbx/listeditor.py -> build/lib/wxtbx copying wxtbx/__init__.py -> build/lib/wxtbx copying wxtbx/ensemble_validation.py -> build/lib/wxtbx copying wxtbx/sequence_view.py -> build/lib/wxtbx copying wxtbx/segmentedctrl.py -> build/lib/wxtbx copying wxtbx/anomalous_scattering.py -> build/lib/wxtbx copying wxtbx/adp_statistics.py -> build/lib/wxtbx copying wxtbx/app.py -> build/lib/wxtbx copying wxtbx/bitmaps.py -> build/lib/wxtbx copying wxtbx/windows.py -> build/lib/wxtbx copying wxtbx/b_plot.py -> build/lib/wxtbx copying wxtbx/misc_dialogs.py -> build/lib/wxtbx copying wxtbx/info_panels.py -> build/lib/wxtbx copying wxtbx/polygon.py -> build/lib/wxtbx copying wxtbx/symmetry_dialog.py -> build/lib/wxtbx copying wxtbx/icons.py -> build/lib/wxtbx copying wxtbx/run_tests.py -> build/lib/wxtbx copying wxtbx/tables.py -> build/lib/wxtbx copying wxtbx/heavy_atoms.py -> build/lib/wxtbx copying wxtbx/polygon_db_viewer.py -> build/lib/wxtbx copying wxtbx/metallicbutton.py -> build/lib/wxtbx copying wxtbx/xtriage.py -> build/lib/wxtbx copying wxtbx/mtz_dump.py -> build/lib/wxtbx copying wxtbx/utils.py -> build/lib/wxtbx copying wxtbx/pdb_editor.py -> build/lib/wxtbx copying wxtbx/errors.py -> build/lib/wxtbx copying wxtbx/process_control.py -> build/lib/wxtbx copying wxtbx/path_dialogs.py -> build/lib/wxtbx creating build/lib/smtbx copying smtbx/__init__.py -> build/lib/smtbx copying smtbx/libtbx_refresh.py -> build/lib/smtbx copying smtbx/development.py -> build/lib/smtbx copying smtbx/run_tests.py -> build/lib/smtbx copying smtbx/utils.py -> build/lib/smtbx creating build/lib/iotbx copying iotbx/reflection_file_utils.py -> build/lib/iotbx copying iotbx/reflection_file_reader.py -> build/lib/iotbx copying iotbx/csv_utils.py -> build/lib/iotbx copying iotbx/format.py -> build/lib/iotbx copying iotbx/builders.py -> build/lib/iotbx copying iotbx/__init__.py -> build/lib/iotbx copying iotbx/pymol.py -> build/lib/iotbx copying iotbx/extract_xtal_data.py -> build/lib/iotbx copying iotbx/phases.py -> build/lib/iotbx copying iotbx/poscar.py -> build/lib/iotbx copying iotbx/symmetry.py -> build/lib/iotbx copying iotbx/reflection_file_converter.py -> build/lib/iotbx copying iotbx/crystal_symmetry_from_any.py -> build/lib/iotbx copying iotbx/wildcard.py -> build/lib/iotbx copying iotbx/option_parser.py -> build/lib/iotbx copying iotbx/builders_depending_on_smtbx.py -> build/lib/iotbx copying iotbx/map_model_manager.py -> build/lib/iotbx copying iotbx/libtbx_refresh.py -> build/lib/iotbx copying iotbx/map_manager.py -> build/lib/iotbx copying iotbx/cli_parser.py -> build/lib/iotbx copying iotbx/run_tests.py -> build/lib/iotbx copying iotbx/table_one.py -> build/lib/iotbx copying iotbx/merging_statistics.py -> build/lib/iotbx copying iotbx/simple_parser.py -> build/lib/iotbx copying iotbx/cif_mtz_data_labels.py -> build/lib/iotbx copying iotbx/phil.py -> build/lib/iotbx copying iotbx/ranges.py -> build/lib/iotbx copying iotbx/mtrix_biomt.py -> build/lib/iotbx copying iotbx/map_tools.py -> build/lib/iotbx copying iotbx/reflection_file_editor.py -> build/lib/iotbx copying iotbx/logfiles.py -> build/lib/iotbx copying iotbx/file_reader.py -> build/lib/iotbx copying iotbx/data_plots.py -> build/lib/iotbx creating build/lib/annlib_adaptbx copying annlib_adaptbx/__init__.py -> build/lib/annlib_adaptbx copying annlib_adaptbx/run_tests.py -> build/lib/annlib_adaptbx creating build/lib/omptbx copying omptbx/__init__.py -> build/lib/omptbx copying omptbx/tst.py -> build/lib/omptbx creating build/lib/fable copying fable/tst_read.py -> build/lib/fable copying fable/tst_cout.py -> build/lib/fable copying fable/tokenization.py -> build/lib/fable copying fable/simple_compilation.py -> build/lib/fable copying fable/tst_equivalence.py -> build/lib/fable copying fable/__init__.py -> build/lib/fable copying fable/intrinsics.py -> build/lib/fable copying fable/cout.py -> build/lib/fable copying fable/read.py -> build/lib/fable copying fable/run_tests.py -> build/lib/fable copying fable/equivalence.py -> build/lib/fable copying fable/tst_ext.py -> build/lib/fable copying fable/tst_cout_compile.py -> build/lib/fable copying fable/utils.py -> build/lib/fable creating build/lib/libtbx copying libtbx/crossmingw.py -> build/lib/libtbx copying libtbx/cli.py -> build/lib/libtbx copying libtbx/tst_run_tests_parallel_unique_dirs.py -> build/lib/libtbx copying libtbx/program_template.py -> build/lib/libtbx copying libtbx/tst_conda_dispatcher.py -> build/lib/libtbx copying libtbx/tst_xmlrpc_utils.py -> build/lib/libtbx copying libtbx/object_oriented_patterns.py -> build/lib/libtbx copying libtbx/tst_easy_pickle.py -> build/lib/libtbx copying libtbx/containers.py -> build/lib/libtbx copying libtbx/complex_math.py -> build/lib/libtbx copying libtbx/env_config.py -> build/lib/libtbx copying libtbx/tst_citation_encoding.py -> build/lib/libtbx copying libtbx/easy_mp.py -> build/lib/libtbx copying libtbx/__init__.py -> build/lib/libtbx copying libtbx/objgraph.py -> build/lib/libtbx copying libtbx/console_utils.py -> build/lib/libtbx copying libtbx/tst_mahalanobis.py -> build/lib/libtbx copying libtbx/smart_open.py -> build/lib/libtbx copying libtbx/pkg_utils.py -> build/lib/libtbx copying libtbx/str_utils.py -> build/lib/libtbx copying libtbx/metric_prefixes.py -> build/lib/libtbx copying libtbx/tst_add_docstrings_with_ai.py -> build/lib/libtbx copying libtbx/progress.py -> build/lib/libtbx copying libtbx/tst_version.py -> build/lib/libtbx copying libtbx/tst_program_template.py -> build/lib/libtbx copying libtbx/configure.py -> build/lib/libtbx copying libtbx/pyframe.py -> build/lib/libtbx copying libtbx/pyplot.py -> build/lib/libtbx copying libtbx/clear_paths.py -> build/lib/libtbx copying libtbx/tst_find_unused_imports.py -> build/lib/libtbx copying libtbx/tst_str_utils.py -> build/lib/libtbx copying libtbx/tst_citations.py -> build/lib/libtbx copying libtbx/binary_search.py -> build/lib/libtbx copying libtbx/tst_dlite.py -> build/lib/libtbx copying libtbx/xmlrpc_server_example.py -> build/lib/libtbx copying libtbx/option_parser.py -> build/lib/libtbx copying libtbx/tst_easy_mp_multicore.py -> build/lib/libtbx copying libtbx/python_code_parsing.py -> build/lib/libtbx copying libtbx/resource_monitor.py -> build/lib/libtbx copying libtbx/log.py -> build/lib/libtbx copying libtbx/find_reference_cycles.py -> build/lib/libtbx copying libtbx/assert_utils.py -> build/lib/libtbx copying libtbx/runtime_utils.py -> build/lib/libtbx copying libtbx/tst_binary_search.py -> build/lib/libtbx copying libtbx/table_utils.py -> build/lib/libtbx copying libtbx/introspection.py -> build/lib/libtbx copying libtbx/tst_fully_buffered_timeout.py -> build/lib/libtbx copying libtbx/start_print_trace.py -> build/lib/libtbx copying libtbx/citations.py -> build/lib/libtbx copying libtbx/load_env.py -> build/lib/libtbx copying libtbx/libtbx_refresh.py -> build/lib/libtbx copying libtbx/math_utils.py -> build/lib/libtbx copying libtbx/version.py -> build/lib/libtbx copying libtbx/easy_pickle.py -> build/lib/libtbx copying libtbx/clusterTests.py -> build/lib/libtbx copying libtbx/subprocess_with_fixes.py -> build/lib/libtbx copying libtbx/run_tests.py -> build/lib/libtbx copying libtbx/tst_utils.py -> build/lib/libtbx copying libtbx/tst_topological_sort.py -> build/lib/libtbx copying libtbx/tst_python_code_parsing.py -> build/lib/libtbx copying libtbx/cluster.py -> build/lib/libtbx copying libtbx/tst_easy_mp_state.py -> build/lib/libtbx copying libtbx/tst_thread_utils.py -> build/lib/libtbx copying libtbx/easy_profile.py -> build/lib/libtbx copying libtbx/path.py -> build/lib/libtbx copying libtbx/forward_compatibility.py -> build/lib/libtbx copying libtbx/tst_containers.py -> build/lib/libtbx copying libtbx/tst_scheduling.py -> build/lib/libtbx copying libtbx/tst_math_utils.py -> build/lib/libtbx copying libtbx/tst_object_oriented_patterns.py -> build/lib/libtbx copying libtbx/xmlrpc_utils.py -> build/lib/libtbx copying libtbx/code_analysis.py -> build/lib/libtbx copying libtbx/wingide.py -> build/lib/libtbx copying libtbx/try_hello_world_c.py -> build/lib/libtbx copying libtbx/word_index_generator.py -> build/lib/libtbx copying libtbx/tst_path.py -> build/lib/libtbx copying libtbx/file_clutter.py -> build/lib/libtbx copying libtbx/tst_run_tests_parallel_retry.py -> build/lib/libtbx copying libtbx/tst_runtime_utils.py -> build/lib/libtbx copying libtbx/tst_representation.py -> build/lib/libtbx copying libtbx/tst_word_index_generator.py -> build/lib/libtbx copying libtbx/thread_utils.py -> build/lib/libtbx copying libtbx/utils.py -> build/lib/libtbx copying libtbx/dlite.py -> build/lib/libtbx copying libtbx/simplexml.py -> build/lib/libtbx copying libtbx/tst_easy_mp.py -> build/lib/libtbx copying libtbx/easy_run.py -> build/lib/libtbx copying libtbx/mpi4py.py -> build/lib/libtbx copying libtbx/topological_sort.py -> build/lib/libtbx copying libtbx/cpp_function_name.py -> build/lib/libtbx copying libtbx/callbacks.py -> build/lib/libtbx creating build/lib/cctbx_website copying cctbx_website/__init__.py -> build/lib/cctbx_website copying cctbx_website/libtbx_refresh.py -> build/lib/cctbx_website copying cctbx_website/run_tests.py -> build/lib/cctbx_website creating build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/__init__.py -> build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/tst.py -> build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/copy_files.py -> build/lib/ccp4io_adaptbx creating build/lib/boost_adaptbx copying boost_adaptbx/hybrid_times.py -> build/lib/boost_adaptbx copying boost_adaptbx/__init__.py -> build/lib/boost_adaptbx copying boost_adaptbx/libtbx_refresh.py -> build/lib/boost_adaptbx copying boost_adaptbx/run_tests.py -> build/lib/boost_adaptbx creating build/lib/cctbx copying cctbx/__init__.py -> build/lib/cctbx copying cctbx/adptbx.py -> build/lib/cctbx copying cctbx/crystal_orientation.py -> build/lib/cctbx copying cctbx/statistics.py -> build/lib/cctbx copying cctbx/french_wilson.py -> build/lib/cctbx copying cctbx/symmetry_search.py -> build/lib/cctbx copying cctbx/euclidean_model_matching.py -> build/lib/cctbx copying cctbx/libtbx_refresh.py -> build/lib/cctbx copying cctbx/run_tests.py -> build/lib/cctbx copying cctbx/math_module.py -> build/lib/cctbx copying cctbx/anharmonic.py -> build/lib/cctbx copying cctbx/dmtbx.py -> build/lib/cctbx copying cctbx/translation_search.py -> build/lib/cctbx copying cctbx/r_free_utils.py -> build/lib/cctbx copying cctbx/run_examples.py -> build/lib/cctbx copying cctbx/multipolar.py -> build/lib/cctbx creating build/lib/cootbx copying cootbx/validation_lists.py -> build/lib/cootbx copying cootbx/__init__.py -> build/lib/cootbx copying cootbx/hydrogens_button.py -> build/lib/cootbx copying cootbx/ligand_checklist.py -> build/lib/cootbx copying cootbx/watch_file.py -> build/lib/cootbx copying cootbx/interactive_edit.py -> build/lib/cootbx copying cootbx/xmlrpc_server.py -> build/lib/cootbx copying cootbx/view_refinement.py -> build/lib/cootbx copying cootbx/simple_zoom_list.py -> build/lib/cootbx creating build/lib/fftw3tbx copying fftw3tbx/__init__.py -> build/lib/fftw3tbx copying fftw3tbx/libtbx_refresh.py -> build/lib/fftw3tbx copying fftw3tbx/tst_ext.py -> build/lib/fftw3tbx creating build/lib/serialtbx copying serialtbx/__init__.py -> build/lib/serialtbx creating build/lib/xcif copying xcif/__init__.py -> build/lib/xcif copying xcif/run_tests.py -> build/lib/xcif creating build/lib/scitbx copying scitbx/direct_search_simulated_annealing.py -> build/lib/scitbx copying scitbx/regular_grid_on_unit_sphere.py -> build/lib/scitbx copying scitbx/differential_evolution.py -> build/lib/scitbx copying scitbx/__init__.py -> build/lib/scitbx copying scitbx/minimizers.py -> build/lib/scitbx copying scitbx/smoothing.py -> build/lib/scitbx copying scitbx/genetic_algorithm_with_mp.py -> build/lib/scitbx copying scitbx/cross_entropy.py -> build/lib/scitbx copying scitbx/cubicle_neighbors.py -> build/lib/scitbx copying scitbx/golden_section_search.py -> build/lib/scitbx copying scitbx/lbfgsb.py -> build/lib/scitbx copying scitbx/libtbx_refresh.py -> build/lib/scitbx copying scitbx/run_tests.py -> build/lib/scitbx copying scitbx/r3_utils.py -> build/lib/scitbx copying scitbx/restraints.py -> build/lib/scitbx copying scitbx/simplex.py -> build/lib/scitbx copying scitbx/fftpack.py -> build/lib/scitbx copying scitbx/minpack.py -> build/lib/scitbx creating build/lib/cma_es copying cma_es/__init__.py -> build/lib/cma_es copying cma_es/run_tests.py -> build/lib/cma_es copying cma_es/tst_cma_es.py -> build/lib/cma_es copying cma_es/cma_es_interface.py -> build/lib/cma_es creating build/lib/mmtbx copying mmtbx/proq2.py -> build/lib/mmtbx copying mmtbx/pdb_distances.py -> build/lib/mmtbx copying mmtbx/pdbtools.py -> build/lib/mmtbx copying mmtbx/__init__.py -> build/lib/mmtbx copying mmtbx/invariant_domain.py -> build/lib/mmtbx copying mmtbx/xmanip_tasks.py -> build/lib/mmtbx copying mmtbx/process_predicted_model.py -> build/lib/mmtbx copying mmtbx/arrays.py -> build/lib/mmtbx copying mmtbx/lattice.py -> build/lib/mmtbx copying mmtbx/resolve_resources.py -> build/lib/mmtbx copying mmtbx/real_space_correlation.py -> build/lib/mmtbx copying mmtbx/model_vs_data.py -> build/lib/mmtbx copying mmtbx/libtbx_refresh.py -> build/lib/mmtbx copying mmtbx/grow_density.py -> build/lib/mmtbx copying mmtbx/run_tests.py -> build/lib/mmtbx copying mmtbx/find_peaks.py -> build/lib/mmtbx copying mmtbx/restraints.py -> build/lib/mmtbx copying mmtbx/f_model_info.py -> build/lib/mmtbx copying mmtbx/map_tools.py -> build/lib/mmtbx copying mmtbx/superpose.py -> build/lib/mmtbx copying mmtbx/xmanip.py -> build/lib/mmtbx copying mmtbx/clashes.py -> build/lib/mmtbx copying mmtbx/pdb_symmetry.py -> build/lib/mmtbx copying mmtbx/msa.py -> build/lib/mmtbx copying mmtbx/domains_from_pae.py -> build/lib/mmtbx creating build/lib/spotfinder copying spotfinder/__init__.py -> build/lib/spotfinder copying spotfinder/exception.py -> build/lib/spotfinder copying spotfinder/run_tests.py -> build/lib/spotfinder creating build/lib/qttbx/examples copying qttbx/examples/phil_widgets_example.py -> build/lib/qttbx/examples copying qttbx/examples/_helpers.py -> build/lib/qttbx/examples copying qttbx/examples/__init__.py -> build/lib/qttbx/examples copying qttbx/examples/data_manager_example.py -> build/lib/qttbx/examples creating build/lib/qttbx/viewers copying qttbx/viewers/chimerax.py -> build/lib/qttbx/viewers copying qttbx/viewers/__init__.py -> build/lib/qttbx/viewers creating build/lib/qttbx/widgets copying qttbx/widgets/__init__.py -> build/lib/qttbx/widgets copying qttbx/widgets/font_init.py -> build/lib/qttbx/widgets creating build/lib/qttbx/regression copying qttbx/regression/tst_chat_storage.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_logging_setup.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_image.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_diagnostics.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_subagent_view.py -> build/lib/qttbx/regression copying qttbx/regression/__init__.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_runner.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_skills.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_overlay_anchor.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_mcp_client.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_agent_core.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_approval_coordinator.py -> build/lib/qttbx/regression copying qttbx/regression/tst_data_manager_widget.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_credentials_dialog.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_auto_height.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_search.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_markdown.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_profile.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_tools.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_eliding.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_message_input.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_session.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_message_bubble.py -> build/lib/qttbx/regression copying qttbx/regression/tst_run_tests_manifest.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_subagent.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_tool_approval.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_storage_session.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_window_chrome.py -> build/lib/qttbx/regression copying qttbx/regression/tst_phil_widgets.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_conversation_widgets.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_question_card.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_artifact_panel.py -> build/lib/qttbx/regression creating build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/qstr_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/atom_selection.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/float_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/multiple.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/__init__.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/text_base.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/ints_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/floats_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/_colors.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/str_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/strings_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/bool_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/unit_cell.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/words_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/int_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/key_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/delegate.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/choice_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/path_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/space_group.py -> build/lib/qttbx/widgets/phil creating build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_delegate.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/__init__.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_binding_popup.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_table_model.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_phil_helpers.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/widget.py -> build/lib/qttbx/widgets/data_manager creating build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/edge_rail.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/message_bubble.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/overlay_anchor.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/conversation_view.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/__init__.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/artifact.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/tool_approval.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/logging_setup.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/credentials_dialog.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/artifact_panel.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/search_bar.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/message_input.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/tool_call_disclosure.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/conversation_search.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/markdown_export.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/image_cache.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/auto_height.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/chat_top_bar.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/eliding.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/diagnostics.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/image_lightbox.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/question_card.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/markdown_view.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/conversation_list.py -> build/lib/qttbx/widgets/chat creating build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/session.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/profile.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/subagent.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/conversation.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/storage.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/__init__.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/runner.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/paths.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/tools.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/skills.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/base.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/mcp_client.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/events.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/approval.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/errors.py -> build/lib/qttbx/widgets/chat/agent creating build/lib/gltbx/command_line copying gltbx/command_line/__init__.py -> build/lib/gltbx/command_line copying gltbx/command_line/try_imports.py -> build/lib/gltbx/command_line creating build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/__init__.py -> build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/change_basis.py -> build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/tst_sublattice.py -> build/lib/rstbx/sublattice_support creating build/lib/rstbx/dials_core copying rstbx/dials_core/__init__.py -> build/lib/rstbx/dials_core copying rstbx/dials_core/integration_core.py -> build/lib/rstbx/dials_core creating build/lib/rstbx/outlier_spots copying rstbx/outlier_spots/__init__.py -> build/lib/rstbx/outlier_spots copying rstbx/outlier_spots/fit_distribution.py -> build/lib/rstbx/outlier_spots creating build/lib/rstbx/indexing_api copying rstbx/indexing_api/test_dps.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/__init__.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/nearest_neighbor.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/force_cell.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/lattice.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/sampling.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/basis_choice.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/tools.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/outlier_detection.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/outlier_procedure.py -> build/lib/rstbx/indexing_api creating build/lib/rstbx/dps_core copying rstbx/dps_core/constrainment.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/lepage.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/tst_iotbx_converter.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/cell_assessment.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/__init__.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/sampling.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/basis_choice.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/zuoreduction.py -> build/lib/rstbx/dps_core creating build/lib/rstbx/array_family copying rstbx/array_family/__init__.py -> build/lib/rstbx/array_family copying rstbx/array_family/flex.py -> build/lib/rstbx/array_family creating build/lib/rstbx/apps copying rstbx/apps/slip_helpers.py -> build/lib/rstbx/apps copying rstbx/apps/__init__.py -> build/lib/rstbx/apps copying rstbx/apps/spot_markup.py -> build/lib/rstbx/apps copying rstbx/apps/dual_resolution_helpers.py -> build/lib/rstbx/apps creating build/lib/rstbx/simage copying rstbx/simage/__init__.py -> build/lib/rstbx/simage copying rstbx/simage/run_labelit_index.py -> build/lib/rstbx/simage copying rstbx/simage/create.py -> build/lib/rstbx/simage copying rstbx/simage/tst.py -> build/lib/rstbx/simage copying rstbx/simage/wx_display.py -> build/lib/rstbx/simage copying rstbx/simage/explore_completeness.py -> build/lib/rstbx/simage copying rstbx/simage/refine_uc_cr.py -> build/lib/rstbx/simage copying rstbx/simage/solver.py -> build/lib/rstbx/simage copying rstbx/simage/integrate_crude.py -> build/lib/rstbx/simage copying rstbx/simage/run_spotfinder.py -> build/lib/rstbx/simage creating build/lib/rstbx/diffraction copying rstbx/diffraction/tst_predict.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/tst_ewald_sphere.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/__init__.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/tst_partial_derivatives.py -> build/lib/rstbx/diffraction creating build/lib/rstbx/simulation copying rstbx/simulation/sim_pdf.py -> build/lib/rstbx/simulation copying rstbx/simulation/tst_xfel1_simple.py -> build/lib/rstbx/simulation copying rstbx/simulation/__init__.py -> build/lib/rstbx/simulation copying rstbx/simulation/constants.py -> build/lib/rstbx/simulation copying rstbx/simulation/sim_utils.py -> build/lib/rstbx/simulation creating build/lib/rstbx/symmetry copying rstbx/symmetry/subgroup.py -> build/lib/rstbx/symmetry copying rstbx/symmetry/__init__.py -> build/lib/rstbx/symmetry copying rstbx/symmetry/sgtbx_adaptor.py -> build/lib/rstbx/symmetry creating build/lib/rstbx/indexing copying rstbx/indexing/__init__.py -> build/lib/rstbx/indexing copying rstbx/indexing/do_index.py -> build/lib/rstbx/indexing copying rstbx/indexing/tst_auto_monoscan.py -> build/lib/rstbx/indexing copying rstbx/indexing/tst_dataset1.py -> build/lib/rstbx/indexing creating build/lib/rstbx/phil copying rstbx/phil/phil_preferences.py -> build/lib/rstbx/phil copying rstbx/phil/__init__.py -> build/lib/rstbx/phil copying rstbx/phil/preferences.py -> build/lib/rstbx/phil copying rstbx/phil/scope.py -> build/lib/rstbx/phil creating build/lib/rstbx/detectors copying rstbx/detectors/__init__.py -> build/lib/rstbx/detectors copying rstbx/detectors/silicon.py -> build/lib/rstbx/detectors creating build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_validate.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/__init__.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/ersatz_misset.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions_idx.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/compare_mosflm_xds.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2a.py -> build/lib/rstbx/bpcx creating build/lib/rstbx/new_horizons copying rstbx/new_horizons/pixel_spread.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/__init__.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/spot_shape.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/index.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/oscillation_shots.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/stats_index.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/speckfinder.py -> build/lib/rstbx/new_horizons creating build/lib/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_converter.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/__init__.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_helpers.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/tst_coordinate_frame_converter.py -> build/lib/rstbx/cftbx creating build/lib/rstbx/viewer copying rstbx/viewer/integration.py -> build/lib/rstbx/viewer copying rstbx/viewer/pixels3d.py -> build/lib/rstbx/viewer copying rstbx/viewer/__init__.py -> build/lib/rstbx/viewer copying rstbx/viewer/processing.py -> build/lib/rstbx/viewer copying rstbx/viewer/dataset.py -> build/lib/rstbx/viewer copying rstbx/viewer/calibration.py -> build/lib/rstbx/viewer copying rstbx/viewer/drivers.py -> build/lib/rstbx/viewer copying rstbx/viewer/results_base.py -> build/lib/rstbx/viewer copying rstbx/viewer/tst.py -> build/lib/rstbx/viewer copying rstbx/viewer/controls.py -> build/lib/rstbx/viewer copying rstbx/viewer/spotfinder_frame.py -> build/lib/rstbx/viewer copying rstbx/viewer/spotfinder_wrap.py -> build/lib/rstbx/viewer copying rstbx/viewer/calibration_frame.py -> build/lib/rstbx/viewer copying rstbx/viewer/indexing.py -> build/lib/rstbx/viewer copying rstbx/viewer/display.py -> build/lib/rstbx/viewer copying rstbx/viewer/frame.py -> build/lib/rstbx/viewer creating build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/ring_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/example_frame_plugin_hidden.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/__init__.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/pyslip.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/slip_viewer_image_factory.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/score_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/uc_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/calibration_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/slip_display.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/tile_generation.py -> build/lib/rstbx/slip_viewer creating build/lib/rstbx/command_line copying rstbx/command_line/__init__.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.solver.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.create.py -> build/lib/rstbx/command_line copying rstbx/command_line/index.py -> build/lib/rstbx/command_line copying rstbx/command_line/example_viewer.py -> build/lib/rstbx/command_line copying rstbx/command_line/viewer.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.explore_completeness.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.wx_display.py -> build/lib/rstbx/command_line copying rstbx/command_line/slip_viewer.py -> build/lib/rstbx/command_line creating build/lib/rstbx/bandpass copying rstbx/bandpass/__init__.py -> build/lib/rstbx/bandpass copying rstbx/bandpass/simulated_annealing.py -> build/lib/rstbx/bandpass creating build/lib/rstbx/apps/stills copying rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/__init__.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/dials_refinement_preceding_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/util.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/simple_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/stills_integration.py -> build/lib/rstbx/apps/stills creating build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/__init__.py -> build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_utils_clustering.py -> build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> build/lib/rstbx/diffraction/fastbragg creating build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/g_gradients.py -> build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/__init__.py -> build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/parameter_reduction.py -> build/lib/rstbx/symmetry/constraints creating build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/tst_detector_model.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/__init__.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/detector.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/instrument_specifics.py -> build/lib/rstbx/bpcx/detector_model creating build/lib/simtbx/gpu copying simtbx/gpu/tst_gpu_multisource_background.py -> build/lib/simtbx/gpu copying simtbx/gpu/__init__.py -> build/lib/simtbx/gpu copying simtbx/gpu/tst_shoeboxes.py -> build/lib/simtbx/gpu copying simtbx/gpu/tst_exafel_api.py -> build/lib/simtbx/gpu creating build/lib/simtbx/diffBragg copying simtbx/diffBragg/parameter_errors.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/mpi_logger.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/__init__.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/ensemble_refine_launcher.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/attr_list.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_ensemble_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/stage_two_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_io.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/phil.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/prep_stage2_input.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/device.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/psf.py -> build/lib/simtbx/diffBragg creating build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_multisource_background.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/anisotropic_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_frames.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/sim_data.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gauss_argchk.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/__init__.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_input.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_basic.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_minimal.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_beam.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_threads.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_crystal.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_init.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/utils.py -> build/lib/simtbx/nanoBragg creating build/lib/simtbx/modeling copying simtbx/modeling/FormatHDF5AttributeGeometry.py -> build/lib/simtbx/modeling copying simtbx/modeling/__init__.py -> build/lib/simtbx/modeling copying simtbx/modeling/predictions.py -> build/lib/simtbx/modeling copying simtbx/modeling/forward_models.py -> build/lib/simtbx/modeling creating build/lib/simtbx/pixel copying simtbx/pixel/__init__.py -> build/lib/simtbx/pixel creating build/lib/simtbx/kokkos copying simtbx/kokkos/__init__.py -> build/lib/simtbx/kokkos copying simtbx/kokkos/tst_kokkos_lib.py -> build/lib/simtbx/kokkos creating build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/__init__.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/base_refiner.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/geometry.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/stage_two_refiner.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/parameters.py -> build/lib/simtbx/diffBragg/refiners creating build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/__init__.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/manager.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems creating build/lib/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/__init__.py -> build/lib/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/dump.py -> build/lib/cbflib_adaptbx/command_line creating build/lib/wxtbx/plots copying wxtbx/plots/emringer.py -> build/lib/wxtbx/plots copying wxtbx/plots/__init__.py -> build/lib/wxtbx/plots copying wxtbx/plots/molprobity.py -> build/lib/wxtbx/plots creating build/lib/wxtbx/reports copying wxtbx/reports/__init__.py -> build/lib/wxtbx/reports copying wxtbx/reports/blast.py -> build/lib/wxtbx/reports copying wxtbx/reports/pdb_symmetry.py -> build/lib/wxtbx/reports creating build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/floats.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/__init__.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/text_base.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/misc_ctrls.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/floatctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/tribool.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/symop.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/intctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/choice_multi.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/path.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/array_label.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/simple_dialogs.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/boolctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/unit_cell.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/choice.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/numbers.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/ints.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/strctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/strings.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/tree.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/space_group.py -> build/lib/wxtbx/phil_controls creating build/lib/wxtbx/regression copying wxtbx/regression/__init__.py -> build/lib/wxtbx/regression copying wxtbx/regression/tst_headless_construct.py -> build/lib/wxtbx/regression copying wxtbx/regression/tst_process_control.py -> build/lib/wxtbx/regression copying wxtbx/regression/tst_imports.py -> build/lib/wxtbx/regression copying wxtbx/regression/_warnings.py -> build/lib/wxtbx/regression copying wxtbx/regression/_headless_construct_cases.py -> build/lib/wxtbx/regression creating build/lib/wxtbx/command_line copying wxtbx/command_line/inspect_r_free_flags.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/anomalous_differences_histogram.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/plot_anomalous_scattering.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/__init__.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/show_file_info.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/b_plot.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/pdb_statistics.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/wxpython.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/plan_sad_experiment.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/loggraph.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/xtriage.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/pdb_editor.py -> build/lib/wxtbx/command_line creating build/lib/smtbx/masks copying smtbx/masks/__init__.py -> build/lib/smtbx/masks creating build/lib/smtbx/stl copying smtbx/stl/__init__.py -> build/lib/smtbx/stl copying smtbx/stl/map.py -> build/lib/smtbx/stl creating build/lib/smtbx/structure_factors copying smtbx/structure_factors/__init__.py -> build/lib/smtbx/structure_factors creating build/lib/smtbx/absolute_structure copying smtbx/absolute_structure/__init__.py -> build/lib/smtbx/absolute_structure creating build/lib/smtbx/source_generators copying smtbx/source_generators/flex_fwd_h.py -> build/lib/smtbx/source_generators copying smtbx/source_generators/__init__.py -> build/lib/smtbx/source_generators creating build/lib/smtbx/array_family copying smtbx/array_family/__init__.py -> build/lib/smtbx/array_family creating build/lib/smtbx/refinement copying smtbx/refinement/__init__.py -> build/lib/smtbx/refinement copying smtbx/refinement/least_squares.py -> build/lib/smtbx/refinement copying smtbx/refinement/weighting_schemes.py -> build/lib/smtbx/refinement creating build/lib/smtbx/regression copying smtbx/regression/tst_commandline_refine.py -> build/lib/smtbx/regression copying smtbx/regression/__init__.py -> build/lib/smtbx/regression copying smtbx/regression/tst_commandline_anomrefine.py -> build/lib/smtbx/regression creating build/lib/smtbx/ab_initio copying smtbx/ab_initio/__init__.py -> build/lib/smtbx/ab_initio copying smtbx/ab_initio/charge_flipping.py -> build/lib/smtbx/ab_initio creating build/lib/smtbx/command_line copying smtbx/command_line/refine.py -> build/lib/smtbx/command_line copying smtbx/command_line/__init__.py -> build/lib/smtbx/command_line copying smtbx/command_line/anom_refine.py -> build/lib/smtbx/command_line copying smtbx/command_line/benchmark_refinement.py -> build/lib/smtbx/command_line copying smtbx/command_line/absolute_structure.py -> build/lib/smtbx/command_line copying smtbx/command_line/masks.py -> build/lib/smtbx/command_line creating build/lib/smtbx/structure_factors/direct copying smtbx/structure_factors/direct/__init__.py -> build/lib/smtbx/structure_factors/direct creating build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/fpfdp.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/__init__.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/rigid.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/occupancy.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/site.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/adp.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/all.py -> build/lib/smtbx/refinement/constraints creating build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/__init__.py -> build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/origin_fixing_restraints.py -> build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/adp_restraints.py -> build/lib/smtbx/refinement/restraints creating build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_disorder.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_rigid.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_lbfgs.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/__init__.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_reparametrisation.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_constrained_structure.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_direction.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_occupancies.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_same_group.py -> build/lib/smtbx/refinement/constraints/tests creating build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/hydrogens.py -> build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/__init__.py -> build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/all.py -> build/lib/smtbx/refinement/constraints/geometrical creating build/lib/smtbx/regression/test_data copying smtbx/regression/test_data/__init__.py -> build/lib/smtbx/regression/test_data creating build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/__init__.py -> build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_charge_flipping.py -> build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_ab_initio_ext.py -> build/lib/smtbx/ab_initio/tests creating build/lib/iotbx/xds copying iotbx/xds/xparm.py -> build/lib/iotbx/xds copying iotbx/xds/gain_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/__init__.py -> build/lib/iotbx/xds copying iotbx/xds/spot_xds.py -> build/lib/iotbx/xds copying iotbx/xds/xds_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/geometry.py -> build/lib/iotbx/xds copying iotbx/xds/crystal_symmetry_from_hkl.py -> build/lib/iotbx/xds copying iotbx/xds/integrate_hkl.py -> build/lib/iotbx/xds copying iotbx/xds/blank_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/read_ascii.py -> build/lib/iotbx/xds copying iotbx/xds/xds_inp.py -> build/lib/iotbx/xds copying iotbx/xds/correction.py -> build/lib/iotbx/xds creating build/lib/iotbx/pdb copying iotbx/pdb/xray_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/atom_selection.py -> build/lib/iotbx/pdb copying iotbx/pdb/fetch.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_tls.py -> build/lib/iotbx/pdb copying iotbx/pdb/experiment_type.py -> build/lib/iotbx/pdb copying iotbx/pdb/pdb_v3_cif_conversion.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_selection_string.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_secondary_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/records.py -> build/lib/iotbx/pdb copying iotbx/pdb/__init__.py -> build/lib/iotbx/pdb copying iotbx/pdb/rna_dna_detection.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_input_pickling.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_2_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/aa_utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/extract_rfactors_resolutions_sigma.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/hybrid_36.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_read_mtrix_records_from_cif.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy_2.py -> build/lib/iotbx/pdb copying iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_pdb.py -> build/lib/iotbx/pdb copying iotbx/pdb/cryst1_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric.py -> build/lib/iotbx/pdb copying iotbx/pdb/download.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_3_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/crystal_symmetry_from_pdb.py -> build/lib/iotbx/pdb copying iotbx/pdb/secondary_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_selection.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_name_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/atom_name_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/mmcif.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_atom_sort.py -> build/lib/iotbx/pdb copying iotbx/pdb/nucleic_acid_codes.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_ext.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_290_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_rna_dna_atom_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/modified_aa_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/web_service_api.py -> build/lib/iotbx/pdb copying iotbx/pdb/misc_records_output.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_secondary_structure_2.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/pdbe.py -> build/lib/iotbx/pdb copying iotbx/pdb/utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/modified_rna_dna_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/amino_acid_codes.py -> build/lib/iotbx/pdb copying iotbx/pdb/rcsb.py -> build/lib/iotbx/pdb creating build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/__init__.py -> build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/tst.py -> build/lib/iotbx/ccp4_map creating build/lib/iotbx/solve copying iotbx/solve/fpfm_reader.py -> build/lib/iotbx/solve copying iotbx/solve/__init__.py -> build/lib/iotbx/solve copying iotbx/solve/crystal_symmetry_from_inp.py -> build/lib/iotbx/solve creating build/lib/iotbx/examples copying iotbx/examples/pdb_tardy_conf_sampling_simple.py -> build/lib/iotbx/examples copying iotbx/examples/pdbx_mmcif_tutorial.py -> build/lib/iotbx/examples copying iotbx/examples/tst_mtz_free_flipper.py -> build/lib/iotbx/examples copying iotbx/examples/prepare_model_for_rsr.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_split_chains.py -> build/lib/iotbx/examples copying iotbx/examples/__init__.py -> build/lib/iotbx/examples copying iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> build/lib/iotbx/examples copying iotbx/examples/libtbx_phil_examples.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_symmetry_copies.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_shake.py -> build/lib/iotbx/examples copying iotbx/examples/recalculate_phenix_refine_r_factors.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_hierarchy.py -> build/lib/iotbx/examples copying iotbx/examples/direct_methods_light.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_to_map_simple.py -> build/lib/iotbx/examples copying iotbx/examples/mtz_free_flipper.py -> build/lib/iotbx/examples copying iotbx/examples/mtz_convert_free_to_work.py -> build/lib/iotbx/examples creating build/lib/iotbx/ncs copying iotbx/ncs/__init__.py -> build/lib/iotbx/ncs creating build/lib/iotbx/scalepack copying iotbx/scalepack/tst_no_merge_original_index.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/__init__.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/merge.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/no_merge_original_index.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/tst_merge.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/space_group_dictionary.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/crystal_symmetry_from_hkl.py -> build/lib/iotbx/scalepack creating build/lib/iotbx/kriber copying iotbx/kriber/__init__.py -> build/lib/iotbx/kriber copying iotbx/kriber/strudat.py -> build/lib/iotbx/kriber copying iotbx/kriber/tst_strudat.py -> build/lib/iotbx/kriber creating build/lib/iotbx/shelx copying iotbx/shelx/tst_lex_parse_build.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_writer.py -> build/lib/iotbx/shelx copying iotbx/shelx/__init__.py -> build/lib/iotbx/shelx copying iotbx/shelx/fcf.py -> build/lib/iotbx/shelx copying iotbx/shelx/hklf.py -> build/lib/iotbx/shelx copying iotbx/shelx/write_ins.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_fvar_encoding.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_hklf.py -> build/lib/iotbx/shelx copying iotbx/shelx/tokens.py -> build/lib/iotbx/shelx copying iotbx/shelx/crystal_symmetry_from_ins.py -> build/lib/iotbx/shelx copying iotbx/shelx/fvar_encoding.py -> build/lib/iotbx/shelx copying iotbx/shelx/lexer.py -> build/lib/iotbx/shelx copying iotbx/shelx/parsers.py -> build/lib/iotbx/shelx copying iotbx/shelx/writer.py -> build/lib/iotbx/shelx copying iotbx/shelx/errors.py -> build/lib/iotbx/shelx creating build/lib/iotbx/dsn6 copying iotbx/dsn6/__init__.py -> build/lib/iotbx/dsn6 copying iotbx/dsn6/tst.py -> build/lib/iotbx/dsn6 creating build/lib/iotbx/xplor copying iotbx/xplor/ext.py -> build/lib/iotbx/xplor copying iotbx/xplor/tst_xplormap.py -> build/lib/iotbx/xplor copying iotbx/xplor/__init__.py -> build/lib/iotbx/xplor copying iotbx/xplor/crystal_symmetry_from_map.py -> build/lib/iotbx/xplor copying iotbx/xplor/map.py -> build/lib/iotbx/xplor creating build/lib/iotbx/cns copying iotbx/cns/space_group_symbols.py -> build/lib/iotbx/cns copying iotbx/cns/xray_structure.py -> build/lib/iotbx/cns copying iotbx/cns/__init__.py -> build/lib/iotbx/cns copying iotbx/cns/sdb_reader.py -> build/lib/iotbx/cns copying iotbx/cns/tst_cns.py -> build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_utils.py -> build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_from_inp.py -> build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_from_sdb.py -> build/lib/iotbx/cns copying iotbx/cns/sdb_writer.py -> build/lib/iotbx/cns copying iotbx/cns/miller_array.py -> build/lib/iotbx/cns copying iotbx/cns/index_fobs_sigma_reader.py -> build/lib/iotbx/cns copying iotbx/cns/reflection_reader.py -> build/lib/iotbx/cns copying iotbx/cns/pdb_remarks.py -> build/lib/iotbx/cns creating build/lib/iotbx/PrettyPrint copying iotbx/PrettyPrint/__init__.py -> build/lib/iotbx/PrettyPrint copying iotbx/PrettyPrint/tables.py -> build/lib/iotbx/PrettyPrint creating build/lib/iotbx/dtrek copying iotbx/dtrek/dtrek_symmetry_dict.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/__init__.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/crystal_symmetry_from_ref.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/reflnlist_reader.py -> build/lib/iotbx/dtrek creating build/lib/iotbx/cif copying iotbx/cif/restraint_file_merge.py -> build/lib/iotbx/cif copying iotbx/cif/builders.py -> build/lib/iotbx/cif copying iotbx/cif/__init__.py -> build/lib/iotbx/cif copying iotbx/cif/cod_tools.py -> build/lib/iotbx/cif copying iotbx/cif/geometry.py -> build/lib/iotbx/cif copying iotbx/cif/citations.py -> build/lib/iotbx/cif copying iotbx/cif/restraints.py -> build/lib/iotbx/cif copying iotbx/cif/crystal_symmetry_from_cif.py -> build/lib/iotbx/cif copying iotbx/cif/validation.py -> build/lib/iotbx/cif copying iotbx/cif/model.py -> build/lib/iotbx/cif copying iotbx/cif/errors.py -> build/lib/iotbx/cif creating build/lib/iotbx/detectors copying iotbx/detectors/eiger_minicbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/test_mar.py -> build/lib/iotbx/detectors copying iotbx/detectors/cspad_detector_formats.py -> build/lib/iotbx/detectors copying iotbx/detectors/dtrek.py -> build/lib/iotbx/detectors copying iotbx/detectors/marIP.py -> build/lib/iotbx/detectors copying iotbx/detectors/generic_detector.py -> build/lib/iotbx/detectors copying iotbx/detectors/npy.py -> build/lib/iotbx/detectors copying iotbx/detectors/pilatus_minicbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/__init__.py -> build/lib/iotbx/detectors copying iotbx/detectors/saturn.py -> build/lib/iotbx/detectors copying iotbx/detectors/raxis_nonsquare.py -> build/lib/iotbx/detectors copying iotbx/detectors/detectorbase.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_py_cbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc.py -> build/lib/iotbx/detectors copying iotbx/detectors/bruker.py -> build/lib/iotbx/detectors copying iotbx/detectors/mar.py -> build/lib/iotbx/detectors copying iotbx/detectors/test_raxis2.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc_minicbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_debug_write.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_cbf_comp_read_meth.py -> build/lib/iotbx/detectors copying iotbx/detectors/active_area_filter.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_adsc.py -> build/lib/iotbx/detectors copying iotbx/detectors/cbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/noir.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_detectors.py -> build/lib/iotbx/detectors copying iotbx/detectors/raxis.py -> build/lib/iotbx/detectors copying iotbx/detectors/edf.py -> build/lib/iotbx/detectors copying iotbx/detectors/image_from_http_request.py -> build/lib/iotbx/detectors copying iotbx/detectors/eiger.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc_module.py -> build/lib/iotbx/detectors copying iotbx/detectors/url_support.py -> build/lib/iotbx/detectors copying iotbx/detectors/raxisbase.py -> build/lib/iotbx/detectors copying iotbx/detectors/macscience.py -> build/lib/iotbx/detectors copying iotbx/detectors/beam_center_convention.py -> build/lib/iotbx/detectors copying iotbx/detectors/pilatus_slice.py -> build/lib/iotbx/detectors copying iotbx/detectors/hamamatsu.py -> build/lib/iotbx/detectors creating build/lib/iotbx/fullprof copying iotbx/fullprof/__init__.py -> build/lib/iotbx/fullprof copying iotbx/fullprof/write_pcr.py -> build/lib/iotbx/fullprof copying iotbx/fullprof/read_pcr.py -> build/lib/iotbx/fullprof creating build/lib/iotbx/mrcfile copying iotbx/mrcfile/__init__.py -> build/lib/iotbx/mrcfile copying iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> build/lib/iotbx/mrcfile creating build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/alignment_as_hsearch.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/ncbi_blast_xml.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/__init__.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/pdb_info.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/ebi_wu_blast_xml.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/structure.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/pubmed.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/xmlbuild.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/local_blast.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/homologues.py -> build/lib/iotbx/bioinformatics creating build/lib/iotbx/mtz copying iotbx/mtz/tst_dano.py -> build/lib/iotbx/mtz copying iotbx/mtz/extract_from_symmetry_lib.py -> build/lib/iotbx/mtz copying iotbx/mtz/crystal_symmetry_from_mtz.py -> build/lib/iotbx/mtz copying iotbx/mtz/__init__.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_miller_dict.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_extract_from_symmetry_lib.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_ext.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_unmerged.py -> build/lib/iotbx/mtz creating build/lib/iotbx/gui_tools copying iotbx/gui_tools/reflections.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/import_data_and_flags.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/__init__.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/cif_conversions.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/tst.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/models.py -> build/lib/iotbx/gui_tools creating build/lib/iotbx/data_manager copying iotbx/data_manager/yaml.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/real_map.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/__init__.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/json.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/ncs_spec.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/map_coefficients.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/sequence.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/miller_array.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/phil.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/common.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/model.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/restraint.py -> build/lib/iotbx/data_manager creating build/lib/iotbx/file_io copying iotbx/file_io/text_detection.py -> build/lib/iotbx/file_io copying iotbx/file_io/__init__.py -> build/lib/iotbx/file_io copying iotbx/file_io/_maps.py -> build/lib/iotbx/file_io copying iotbx/file_io/detection.py -> build/lib/iotbx/file_io copying iotbx/file_io/reader.py -> build/lib/iotbx/file_io creating build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_multimodel.py -> build/lib/iotbx/regression copying iotbx/regression/tst_lattice_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_xray_scale.py -> build/lib/iotbx/regression copying iotbx/regression/tst_simple_map_coefficients.py -> build/lib/iotbx/regression copying iotbx/regression/tst_file_io.py -> build/lib/iotbx/regression copying iotbx/regression/tst_generate_n_char_string.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_pdb_v3.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_tools.py -> build/lib/iotbx/regression copying iotbx/regression/tst_extract_xtal_data.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_statistics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_fetch.py -> build/lib/iotbx/regression copying iotbx/regression/tst_data_plots.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_cif_cells.py -> build/lib/iotbx/regression copying iotbx/regression/__init__.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_split_data_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_text_detection.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_3.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdbx_mmcif_tutorial.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_cif_inputs.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> build/lib/iotbx/regression copying iotbx/regression/tst_simple_parser.py -> build/lib/iotbx/regression copying iotbx/regression/tst_miller_sort_asu.py -> build/lib/iotbx/regression copying iotbx/regression/tst_phases.py -> build/lib/iotbx/regression copying iotbx/regression/tst_sort_atoms.py -> build/lib/iotbx/regression copying iotbx/regression/tst_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_3.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_editor.py -> build/lib/iotbx/regression copying iotbx/regression/tst_patterson.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cif_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_show_systematic_absences.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mrc_io.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cli_parser.py -> build/lib/iotbx/regression copying iotbx/regression/tst_box_around_molecule.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_to_from_hierarchy.py -> build/lib/iotbx/regression copying iotbx/regression/tst_atom_selections_10k.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_local_resolution_10.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> build/lib/iotbx/regression copying iotbx/regression/tst_add_conformations.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_id_str.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_4.py -> build/lib/iotbx/regression copying iotbx/regression/tst_file_reader.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_reader.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_utils.py -> build/lib/iotbx/regression copying iotbx/regression/tst_poscar.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mtz_as_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_phil.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_altlocs.py -> build/lib/iotbx/regression copying iotbx/regression/tst_export_scalepack_unmerged.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cif_as_pdb_1atom.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_call_consistency.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_as_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager_wrapping.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_4.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_link_records.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_input.py -> build/lib/iotbx/regression copying iotbx/regression/tst_group_rounding.py -> build/lib/iotbx/regression copying iotbx/regression/tst_data_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_copy_select.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_occupancies_rounding.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_as_fasta.py -> build/lib/iotbx/regression copying iotbx/regression/tst_csv_utils.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_restraints_merge.py -> build/lib/iotbx/regression copying iotbx/regression/tst_selected_hierarchy_flip.py -> build/lib/iotbx/regression copying iotbx/regression/tst_split_models.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_crystal_symmetry_from_any.py -> build/lib/iotbx/regression copying iotbx/regression/tst_merging_statistics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reindex.py -> build/lib/iotbx/regression copying iotbx/regression/tst_examples.py -> build/lib/iotbx/regression copying iotbx/regression/tst_wildcard.py -> build/lib/iotbx/regression copying iotbx/regression/utils.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_bioinformatics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_all_chain_ids.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_segids.py -> build/lib/iotbx/regression creating build/lib/iotbx/command_line copying iotbx/command_line/detector_image_as_png.py -> build/lib/iotbx/command_line copying iotbx/command_line/get_pubmed_citation.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/patterson_map.py -> build/lib/iotbx/command_line copying iotbx/command_line/dano_as_amplitudes.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_as_cns.py -> build/lib/iotbx/command_line copying iotbx/command_line/build_phil_cache.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_cif_conversion.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.print_sequence.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns_as_mtz.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_add_conformations.py -> build/lib/iotbx/command_line copying iotbx/command_line/poscar_as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/csv_as_mtz.py -> build/lib/iotbx/command_line copying iotbx/command_line/__init__.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.box_around_molecule.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.sdb_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.transfer_crystal_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.as_miller_arrays.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.validate.py -> build/lib/iotbx/command_line copying iotbx/command_line/explore_metric_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_labels_diff.py -> build/lib/iotbx/command_line copying iotbx/command_line/emma.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_show_connectivity.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.dump_as_python.py -> build/lib/iotbx/command_line copying iotbx/command_line/show_systematic_absences.py -> build/lib/iotbx/command_line copying iotbx/command_line/biomt_reconstruction.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_converter.py -> build/lib/iotbx/command_line copying iotbx/command_line/reindex.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_completion_simple.py -> build/lib/iotbx/command_line copying iotbx/command_line/sort_atoms.py -> build/lib/iotbx/command_line copying iotbx/command_line/crystal_symmetry_from_any.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/blast_pdb.py -> build/lib/iotbx/command_line copying iotbx/command_line/effective_resolution.py -> build/lib/iotbx/command_line copying iotbx/command_line/french_wilson.py -> build/lib/iotbx/command_line copying iotbx/command_line/symmetry_search.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.reflection_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/lattice_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif_as_pdb.py -> build/lib/iotbx/command_line copying iotbx/command_line/xplor.map.show_summary.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.hierarchy.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_remediator.py -> build/lib/iotbx/command_line copying iotbx/command_line/merging_statistics.py -> build/lib/iotbx/command_line copying iotbx/command_line/unique_with_biomt.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_get_citation.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_accumulation.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_as_fasta.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.insert_scale_records.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.superpose_centers_of_mass.py -> build/lib/iotbx/command_line copying iotbx/command_line/show_distances.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/distance_least_squares.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_labels_comparison.py -> build/lib/iotbx/command_line copying iotbx/command_line/phil.py -> build/lib/iotbx/command_line copying iotbx/command_line/dtrek.to_cns.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.superpose_atoms_by_name.py -> build/lib/iotbx/command_line copying iotbx/command_line/simple_map_coefficients.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.join_fragment_files.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtz.dump.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_split_models.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtrix_reconstruction.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtz_as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/export_scalepack_unmerged.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_editor.py -> build/lib/iotbx/command_line copying iotbx/command_line/split_data_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/cbf_read.py -> build/lib/iotbx/command_line copying iotbx/command_line/flip_symmetric_amino_acids.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/file_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_statistics.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.b_factor_stats.py -> build/lib/iotbx/command_line creating build/lib/iotbx/programs copying iotbx/programs/__init__.py -> build/lib/iotbx/programs copying iotbx/programs/unique_with_biomt.py -> build/lib/iotbx/programs copying iotbx/programs/box_around_molecule.py -> build/lib/iotbx/programs copying iotbx/programs/split_data_cif.py -> build/lib/iotbx/programs creating build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/__init__.py -> build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/tst_remediator.py -> build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/remediator.py -> build/lib/iotbx/pdb/remediation creating build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/__init__.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/tst.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v2_simple.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v3_better.py -> build/lib/iotbx/examples/pdb_truncate_to_ala creating build/lib/iotbx/detectors/context copying iotbx/detectors/context/endstation_max_iv_trial.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/__init__.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/config_detector.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/endstation.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/camera_convention.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/spot_xy_convention.py -> build/lib/iotbx/detectors/context creating build/lib/iotbx/detectors/util copying iotbx/detectors/util/__init__.py -> build/lib/iotbx/detectors/util copying iotbx/detectors/util/filters.py -> build/lib/iotbx/detectors/util creating build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_input.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/__init__.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_without_validation.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_user_selections.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_reordered_chains.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_ligs.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_shortcut_1.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> build/lib/iotbx/regression/ncs creating build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/self_match.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/__init__.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/sample.py -> build/lib/annlib_adaptbx/annlib_adaptbx creating build/lib/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/__init__.py -> build/lib/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/generate_all.py -> build/lib/annlib_adaptbx/source_generators creating build/lib/fable/command_line copying fable/command_line/show_calls.py -> build/lib/fable/command_line copying fable/command_line/__init__.py -> build/lib/fable/command_line copying fable/command_line/split.py -> build/lib/fable/command_line copying fable/command_line/fem_include_search_paths.py -> build/lib/fable/command_line copying fable/command_line/insert_write_at_start_of_each_procedure.py -> build/lib/fable/command_line copying fable/command_line/cout.py -> build/lib/fable/command_line copying fable/command_line/read.py -> build/lib/fable/command_line creating build/lib/libtbx/development copying libtbx/development/__init__.py -> build/lib/libtbx/development copying libtbx/development/xcode_build_phase.py -> build/lib/libtbx/development copying libtbx/development/timers.py -> build/lib/libtbx/development copying libtbx/development/except_Exception.py -> build/lib/libtbx/development creating build/lib/libtbx/langchain copying libtbx/langchain/run_build_db.py -> build/lib/libtbx/langchain copying libtbx/langchain/__init__.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_inspect_db.py -> build/lib/libtbx/langchain copying libtbx/langchain/phenix_knowledge.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_query_docs.py -> build/lib/libtbx/langchain creating build/lib/libtbx/sphinx copying libtbx/sphinx/python_string.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/__init__.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/pubmed.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/phil.py -> build/lib/libtbx/sphinx creating build/lib/libtbx/server copying libtbx/server/FileServer.py -> build/lib/libtbx/server copying libtbx/server/__init__.py -> build/lib/libtbx/server copying libtbx/server/SocketServer.py -> build/lib/libtbx/server copying libtbx/server/StartServer.py -> build/lib/libtbx/server copying libtbx/server/FileClient.py -> build/lib/libtbx/server copying libtbx/server/FileSocket.py -> build/lib/libtbx/server creating build/lib/libtbx/test_utils copying libtbx/test_utils/parallel.py -> build/lib/libtbx/test_utils copying libtbx/test_utils/__init__.py -> build/lib/libtbx/test_utils creating build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/pbs_utils.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/__init__.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/lsf.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/communication.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/remote.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/tst.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/sge_utils.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling_helpers.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/looping.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/generic.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling.py -> build/lib/libtbx/queuing_system_utils creating build/lib/libtbx/auto_build copying libtbx/auto_build/install_base_packages.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/rpath.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/__init__.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/package_defs.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/regenerate_module_files.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_windows_exe.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_distribution.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/make_bundle.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_cctbx_bundle_for_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/installer_utils.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/bootstrap.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_mac_app.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_mac_pkg.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/setup_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_conda.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/plus_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_windows_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/write_gui_dispatcher_include.py -> build/lib/libtbx/auto_build creating build/lib/libtbx/scheduling copying libtbx/scheduling/mainthread.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/parallel_for.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/__init__.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/cluster_handler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/job_scheduler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/stacktrace.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/shared_resource.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/mp_handler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/thread_handler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/process_pool.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/file_queue.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/result.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/socket_queue.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/philgen.py -> build/lib/libtbx/scheduling creating build/lib/libtbx/phil copying libtbx/phil/command_line.py -> build/lib/libtbx/phil copying libtbx/phil/experimental.py -> build/lib/libtbx/phil copying libtbx/phil/tokenizer.py -> build/lib/libtbx/phil copying libtbx/phil/tst_interface.py -> build/lib/libtbx/phil copying libtbx/phil/__init__.py -> build/lib/libtbx/phil copying libtbx/phil/gui_objects.py -> build/lib/libtbx/phil copying libtbx/phil/tst_tokenizer.py -> build/lib/libtbx/phil copying libtbx/phil/tst.py -> build/lib/libtbx/phil copying libtbx/phil/interface.py -> build/lib/libtbx/phil copying libtbx/phil/parser.py -> build/lib/libtbx/phil copying libtbx/phil/tst_experimental.py -> build/lib/libtbx/phil creating build/lib/libtbx/bundle copying libtbx/bundle/copy_build_libtbx.py -> build/lib/libtbx/bundle copying libtbx/bundle/__init__.py -> build/lib/libtbx/bundle copying libtbx/bundle/install_bat.py -> build/lib/libtbx/bundle copying libtbx/bundle/copy_all.py -> build/lib/libtbx/bundle copying libtbx/bundle/copy_runtime_sources.py -> build/lib/libtbx/bundle copying libtbx/bundle/install_csh.py -> build/lib/libtbx/bundle copying libtbx/bundle/utils.py -> build/lib/libtbx/bundle creating build/lib/libtbx/program_utils copying libtbx/program_utils/statistics_info.py -> build/lib/libtbx/program_utils copying libtbx/program_utils/__init__.py -> build/lib/libtbx/program_utils copying libtbx/program_utils/result.py -> build/lib/libtbx/program_utils creating build/lib/libtbx/command_line copying libtbx/command_line/show_date_and_time.py -> build/lib/libtbx/command_line copying libtbx/command_line/ipython_shell_start.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_unused_imports.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_variable_names.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_dist_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin.py -> build/lib/libtbx/command_line copying libtbx/command_line/cctbx_chunk.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_commands.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_files.py -> build/lib/libtbx/command_line copying libtbx/command_line/printenv.py -> build/lib/libtbx/command_line copying libtbx/command_line/any2unix.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_build_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/check_libcpp.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_host_and_user.py -> build/lib/libtbx/command_line copying libtbx/command_line/seconds_since_the_epoch.py -> build/lib/libtbx/command_line copying libtbx/command_line/sge_available_slots.py -> build/lib/libtbx/command_line copying libtbx/command_line/import_all_ext.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_clutter.py -> build/lib/libtbx/command_line copying libtbx/command_line/run_tests_parallel.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_source_files_sorted_by_size.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_tests.py -> build/lib/libtbx/command_line copying libtbx/command_line/__init__.py -> build/lib/libtbx/command_line copying libtbx/command_line/easy_qsub.py -> build/lib/libtbx/command_line copying libtbx/command_line/line_count.py -> build/lib/libtbx/command_line copying libtbx/command_line/install.py -> build/lib/libtbx/command_line copying libtbx/command_line/import_all_python.py -> build/lib/libtbx/command_line copying libtbx/command_line/dtrace.py -> build/lib/libtbx/command_line copying libtbx/command_line/resource_monitor_plot.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_selfx.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_env.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_line_count.py -> build/lib/libtbx/command_line copying libtbx/command_line/clear_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_not_show_diff.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_python_dependencies.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_bin_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_include_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_numpy_version.py -> build/lib/libtbx/command_line copying libtbx/command_line/sge_qstat_counts.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_reserved_names.py -> build/lib/libtbx/command_line copying libtbx/command_line/bundle_as_exe.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_unused_imports_crude.py -> build/lib/libtbx/command_line copying libtbx/command_line/remove_tree.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_but_no_repr.py -> build/lib/libtbx/command_line copying libtbx/command_line/make_sphinx_html.py -> build/lib/libtbx/command_line copying libtbx/command_line/raise_exception_for_testing.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_installer.py -> build/lib/libtbx/command_line copying libtbx/command_line/env_run.py -> build/lib/libtbx/command_line copying libtbx/command_line/nequal.py -> build/lib/libtbx/command_line copying libtbx/command_line/remove_unused_imports.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_windows_exe.py -> build/lib/libtbx/command_line copying libtbx/command_line/path_utility.py -> build/lib/libtbx/command_line copying libtbx/command_line/sphinx_build.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_module_dependencies.py -> build/lib/libtbx/command_line copying libtbx/command_line/py_compile_all.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_old_style_classes.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_lib_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/run_pickled_function.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_cctbx_bundle_for_installer.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_build_options.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_repository_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_unzipsfx.py -> build/lib/libtbx/command_line copying libtbx/command_line/start_binary_bundle.py -> build/lib/libtbx/command_line copying libtbx/command_line/epydoc_run.py -> build/lib/libtbx/command_line copying libtbx/command_line/reindent.py -> build/lib/libtbx/command_line copying libtbx/command_line/scons.py -> build/lib/libtbx/command_line copying libtbx/command_line/clean_clutter.py -> build/lib/libtbx/command_line copying libtbx/command_line/remote_processing.py -> build/lib/libtbx/command_line copying libtbx/command_line/start_process.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_untested.py -> build/lib/libtbx/command_line copying libtbx/command_line/add_docstrings_with_ai.py -> build/lib/libtbx/command_line copying libtbx/command_line/wait_for_file.py -> build/lib/libtbx/command_line copying libtbx/command_line/parallel_simple.py -> build/lib/libtbx/command_line copying libtbx/command_line/prime_factors_of.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_pythonpath.py -> build/lib/libtbx/command_line copying libtbx/command_line/phil.py -> build/lib/libtbx/command_line copying libtbx/command_line/git_avoid_merges.py -> build/lib/libtbx/command_line copying libtbx/command_line/bootstrap.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_mac_app.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_number_of_processors.py -> build/lib/libtbx/command_line copying libtbx/command_line/make_dist.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_numeric_version.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_in_repositories.py -> build/lib/libtbx/command_line copying libtbx/command_line/install_conda.py -> build/lib/libtbx/command_line copying libtbx/command_line/extract_code_from_txt.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_install_script_bat.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_under_build.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_environ_usage.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_pdb_mmcif_problems.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_modules.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_full_command_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin_ends_with.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin_contains_strings.py -> build/lib/libtbx/command_line copying libtbx/command_line/analyse_code_comments.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_all_on_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/help.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_python_sys_executable.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_files.py -> build/lib/libtbx/command_line creating build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/file_metadata.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/transport.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/planner.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/perceive_checks.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/phenix_utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/contract.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/session.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/generate_safety_docs.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/structure_model.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/best_files_tracker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/program_registry.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/sanity_checker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/directive_extractor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/placement_checker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/thinking_agent.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/template_builder.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/format_validation.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/validation_inspector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/config_loader.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/phil_validator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/dry_run_manager.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/raw_advice_scanner.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/__init__.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/file_utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/workflow_state.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/kb_tags.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/generate_logic_doc.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/directive_validator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/intent_classifier.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/yaml_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/rules_selector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/command_postprocessor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/gate_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/command_builder.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/nl_to_phil.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/plan_generator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/metric_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/pattern_manager.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/validation_history.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/docs_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/metrics_analyzer.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/program_validator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/error_classifier.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/workflow_engine.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/error_analyzer.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/strategy_memory.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/rate_limit_handler.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/session_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/failure_diagnoser.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/mtz_inspector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/memory.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph_nodes.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/log_section_extractor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/tst_agent_enhancements.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/display_data_model.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/api_client.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/hypothesis_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph_state.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/event_formatter.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/advice_preprocessor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/event_log.py -> build/lib/libtbx/langchain/agent creating build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/yaml_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/plan_schema.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/metric_patterns.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/__init__.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/plan_template_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/thinking_prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/phenix_programs.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/prompts_hybrid.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/explanation_prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/summary_display.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/html_report_template.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/program_registration.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/api_schema.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/kb_loader.py -> build/lib/libtbx/langchain/knowledge creating build/lib/libtbx/langchain/examples copying libtbx/langchain/examples/__init__.py -> build/lib/libtbx/langchain/examples creating build/lib/libtbx/langchain/commands copying libtbx/langchain/commands/__init__.py -> build/lib/libtbx/langchain/commands copying libtbx/langchain/commands/base.py -> build/lib/libtbx/langchain/commands creating build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/__init__.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/summarizer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/state_extractor.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/agent_session_analyzer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/log_info.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/analyzer.py -> build/lib/libtbx/langchain/analysis creating build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/__init__.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/_chroma_resilience.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/document_loader.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/retriever.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/vector_store.py -> build/lib/libtbx/langchain/rag creating build/lib/libtbx/langchain/core copying libtbx/langchain/core/_build_info.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/types.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/__init__.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/_version.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/llm.py -> build/lib/libtbx/langchain/core creating build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/__init__.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/text_processing.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/query.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/run_utils.py -> build/lib/libtbx/langchain/utils creating build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_dry_run.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase9_llm_perturbation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_scenario_tracer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_portkey_embedding_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_contract_compliance.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_display_data_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_v120_providers.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_extraction_failure_visibility.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_mtz_phases_session_blocking.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_gate_evaluator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase7_routing_simulation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_silent_stop_abort_messages.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_workflow_state.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_perceive_stop_checks.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_resolution_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_error_classifier.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_yaml_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_cc_key_extraction.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_data_input_filter.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_general_resolver.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_shared_code_imports.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_langchain_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_history_analysis.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_autobuild_hl_recovery.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_thinking_defense.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_sanity_checker.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_condition_fix.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/__init__.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validate_file_overrides.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_template.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_layer_diagnostics.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase0_static_audit.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_fabricated_stop_condition.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase5_error_classification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_decision_flow.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_v112_13_fixes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_validator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_explanation_prompts.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_solve_action_keywords.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_categorizer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_predict_and_build_no_ncs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_skip_promotion.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase2_path_consistency.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_flags_missing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_condition_false_positive.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_error_analyzer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_dock_and_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_old_client_compat.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phaser_multimodel.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_default_models.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_user_advice_filter.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_raw_advice_scanner.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/canary_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_optional_dep_resilience.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_categorization.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_protocol_version.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor_grounding.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_best_files_tracker.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase4_history_flags.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_n_bugs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_generate_guard.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase8_command_building.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_h17_strip_executor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/run_all_tests.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_canary.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_after_program_prompt.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_diagnosed_failure_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_metric_patterns.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_extended_stop_phrasings.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_standalone_consistency.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_strategy_memory.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_schema.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_initialize_plan_smoke.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_hardcoded_cleanup.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_mtz_crosscheck.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_simple_extractor_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_supported_providers_single_source.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_abort_message_all_stops.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_log_extractor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validation_history.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_structure_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_spurious_stop_after_requested.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_reactive_deviation_hold.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_cryoem_stop_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_summary_display.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_transport.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_workflow_complete_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validate_step_after_program_guard.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_generator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_grounding_stop_after_requested.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_metrics_analyzer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_program_requirements.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_resume_reopen_stages.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_copies_tracking.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase6_category_consumer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_dependencies.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_thinking_agent.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rebuild_template_selection.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/test_api_keys.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_fix_verification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_validator_typo_hints.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_lead_program_offer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_sequence_only_routing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_preprocessor_file_override.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_new_programs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_refine_final_rfree.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_llm_unavailable_notice.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3_bug5.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_directives.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_extract_raw_advice.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_event_system.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_autobuild_sequence_waiver.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/audit_phase_rename.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_audit_fixes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_settings_list_coercion.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_advice_preprocessing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_action_item_1.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_lock_reconciliation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_obs_labels_auto_fill.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_state_serialization.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_program_registration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_planning_framework.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_provider_error_classification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_reason_prompt.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3_serialization_symmetry.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_safe_float_consolidation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_autosol_bugs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_reason_codes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_space_group_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_docs_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_provider_lock.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phil_namespace_cleaner.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase1_contract_gaps.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_api_schema.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_pattern_manager.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_diagnostic_messages.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_classify_mtz_type_001.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_summary.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_reasoning_command_divergence.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_event_formatter_file_categories.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_intent_classifier.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directives_integration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_skip_to_program.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_agent_build_info.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_yaml_config.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_command_builder.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/analyze_tutorial_runs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phil_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_placement_skip_rebuild.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase2b_activation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_integration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_encoding.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_hypothesis_evaluator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_force_no_ai_server.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_backward_compat.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_step1f_single_emit.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_after_program_fill_from_raw.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_ligand_workflow_restart.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_density_modify_experiment_type.py -> build/lib/libtbx/langchain/tests creating build/lib/libtbx/langchain/strategies copying libtbx/langchain/strategies/__init__.py -> build/lib/libtbx/langchain/strategies copying libtbx/langchain/strategies/base.py -> build/lib/libtbx/langchain/strategies creating build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/__init__.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/run_llm_tests.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/framework.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_c1_raw_authority.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_framework_self.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/canary_check.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_planning.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_directive_extraction.py -> build/lib/libtbx/langchain/tests/llm creating build/lib/libtbx/langchain/tests/integration copying libtbx/langchain/tests/integration/__init__.py -> build/lib/libtbx/langchain/tests/integration creating build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/status.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/__init__.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/transfer.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/util.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/polling.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/submission.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/errors.py -> build/lib/libtbx/queuing_system_utils/processing creating build/lib/cctbx_website/regression copying cctbx_website/regression/tst_11_script_1.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_12_script_compare_ss.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_13_script_ideal_ss.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_2_doc_hlo_intro.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/__init__.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_15_doc_models_hierarchy.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_py_from_html.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_8_doc_maps_intro.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_18_doc_programming_tips_2.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/exercise.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_9_doc_maps_boxing.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_17_script_rfactors.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_1_template.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_19_doc_programming_tips_3.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_10_doc_programming_tips_1.py -> build/lib/cctbx_website/regression creating build/lib/cctbx_website/command_line copying cctbx_website/command_line/run_pdoc_cctbx_api.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/edit_for_boost.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/__init__.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/tst_comment_to_docstring.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/edit_html.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/comment_to_docstring.py -> build/lib/cctbx_website/command_line creating build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/__init__.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/tuple.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/optional.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/std_pair.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/rational.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/python.py -> build/lib/boost_adaptbx/boost creating build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/maximum_clique.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/breadth_first_search.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/metric.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/__init__.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/graph_structure_comparison.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/min_cut_max_flow.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/connected_component_algorithm.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/clustering_algorithm.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/minimum_cut_enumerate.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/utility.py -> build/lib/boost_adaptbx/graph creating build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/double_overflow.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/gcd.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/lcm.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_platform_info.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/__init__.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/segmentation_fault.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/divide_by_zero.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/int_overflow.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_environ_usage.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/inexact.py -> build/lib/boost_adaptbx/command_line creating build/lib/cctbx/masks copying cctbx/masks/__init__.py -> build/lib/cctbx/masks creating build/lib/cctbx/development copying cctbx/development/electron_density_sampling.py -> build/lib/cctbx/development copying cctbx/development/debug_utils.py -> build/lib/cctbx/development copying cctbx/development/structure_factor_utils.py -> build/lib/cctbx/development copying cctbx/development/tst_cns_hl.py -> build/lib/cctbx/development copying cctbx/development/create_models_or_maps.py -> build/lib/cctbx/development copying cctbx/development/run_shelx76.py -> build/lib/cctbx/development copying cctbx/development/__init__.py -> build/lib/cctbx/development copying cctbx/development/make_settings.py -> build/lib/cctbx/development copying cctbx/development/make_cns_input.py -> build/lib/cctbx/development copying cctbx/development/github.py -> build/lib/cctbx/development copying cctbx/development/direct_or_fft.py -> build/lib/cctbx/development copying cctbx/development/tst_cns_epsilon.py -> build/lib/cctbx/development copying cctbx/development/cns_density_modification.py -> build/lib/cctbx/development copying cctbx/development/random_structure.py -> build/lib/cctbx/development copying cctbx/development/fmt_utils.py -> build/lib/cctbx/development copying cctbx/development/approx_amplitude_vs_resolution.py -> build/lib/cctbx/development copying cctbx/development/space_group_option_parser.py -> build/lib/cctbx/development copying cctbx/development/run_shelx.py -> build/lib/cctbx/development creating build/lib/cctbx/xray copying cctbx/xray/ext.py -> build/lib/cctbx/xray copying cctbx/xray/__init__.py -> build/lib/cctbx/xray copying cctbx/xray/observation_types.py -> build/lib/cctbx/xray copying cctbx/xray/structure.py -> build/lib/cctbx/xray copying cctbx/xray/minimization.py -> build/lib/cctbx/xray copying cctbx/xray/weighting_schemes.py -> build/lib/cctbx/xray copying cctbx/xray/target_functors.py -> build/lib/cctbx/xray copying cctbx/xray/scatterer.py -> build/lib/cctbx/xray creating build/lib/cctbx/crystal copying cctbx/crystal/distance_based_connectivity.py -> build/lib/cctbx/crystal copying cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/lib/cctbx/crystal copying cctbx/crystal/__init__.py -> build/lib/cctbx/crystal copying cctbx/crystal/reindex.py -> build/lib/cctbx/crystal copying cctbx/crystal/coordination_sequences.py -> build/lib/cctbx/crystal copying cctbx/crystal/tst_distance_based_connectivity.py -> build/lib/cctbx/crystal copying cctbx/crystal/close_packing.py -> build/lib/cctbx/crystal copying cctbx/crystal/direct_space_asu.py -> build/lib/cctbx/crystal copying cctbx/crystal/tst_super_cell.py -> build/lib/cctbx/crystal copying cctbx/crystal/super_cell.py -> build/lib/cctbx/crystal copying cctbx/crystal/tst_ext.py -> build/lib/cctbx/crystal copying cctbx/crystal/find_best_cell.py -> build/lib/cctbx/crystal creating build/lib/cctbx/examples copying cctbx/examples/reduced_cell_two_folds.py -> build/lib/cctbx/examples copying cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/lib/cctbx/examples copying cctbx/examples/location_part.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_2.py -> build/lib/cctbx/examples copying cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/miller_transform.py -> build/lib/cctbx/examples copying cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/lib/cctbx/examples copying cctbx/examples/unit_cell_refinement.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_3.py -> build/lib/cctbx/examples copying cctbx/examples/site_symmetry_constraints.py -> build/lib/cctbx/examples copying cctbx/examples/find_distances_using_cpp_objects.py -> build/lib/cctbx/examples copying cctbx/examples/__init__.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/analyze_adp.py -> build/lib/cctbx/examples copying cctbx/examples/lebedev_2005_perturbation.py -> build/lib/cctbx/examples copying cctbx/examples/hirshfeld_test.py -> build/lib/cctbx/examples copying cctbx/examples/list_non_principal_continuous_shifts.py -> build/lib/cctbx/examples copying cctbx/examples/random_puckers.py -> build/lib/cctbx/examples copying cctbx/examples/neutron_structure_factors.py -> build/lib/cctbx/examples copying cctbx/examples/ccp4_map.py -> build/lib/cctbx/examples copying cctbx/examples/fft_map_electron_density_around_atom.py -> build/lib/cctbx/examples copying cctbx/examples/sub_group_graph.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_3.py -> build/lib/cctbx/examples copying cctbx/examples/symops_530.py -> build/lib/cctbx/examples copying cctbx/examples/change_hand_p31.py -> build/lib/cctbx/examples copying cctbx/examples/cr2o3_consistency_checks.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_4.py -> build/lib/cctbx/examples copying cctbx/examples/exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/view_fft_map.py -> build/lib/cctbx/examples copying cctbx/examples/unit_cell_minimizers.py -> build/lib/cctbx/examples copying cctbx/examples/space_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/adp_symmetry_constraints.py -> build/lib/cctbx/examples copying cctbx/examples/convert_ccp4_symop_lib.py -> build/lib/cctbx/examples copying cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/lib/cctbx/examples copying cctbx/examples/all_axes.py -> build/lib/cctbx/examples copying cctbx/examples/space_group_matrices.py -> build/lib/cctbx/examples copying cctbx/examples/g_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/maximum_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/getting_started.py -> build/lib/cctbx/examples copying cctbx/examples/quartz_structure.py -> build/lib/cctbx/examples copying cctbx/examples/steve_collins.py -> build/lib/cctbx/examples copying cctbx/examples/random_f_calc.py -> build/lib/cctbx/examples copying cctbx/examples/g_exp_i_partial_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/miller_common_sets.py -> build/lib/cctbx/examples copying cctbx/examples/tst_phase_o_phrenia.py -> build/lib/cctbx/examples copying cctbx/examples/phase_o_phrenia.py -> build/lib/cctbx/examples copying cctbx/examples/tst_space_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_2.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_4.py -> build/lib/cctbx/examples copying cctbx/examples/site_symmetry_table.py -> build/lib/cctbx/examples copying cctbx/examples/map_skewness.py -> build/lib/cctbx/examples copying cctbx/examples/f_model_example.py -> build/lib/cctbx/examples copying cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/cr2o3_primitive_cell.py -> build/lib/cctbx/examples creating build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/auto_linking_types.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_proxy_registry.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/__init__.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/lbfgs.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/standard_cif_links.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/flags.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/energies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/base_geometry.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_ext.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_angle_derivs.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/distance_least_squares.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/linking_class.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/manager.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_motif.py -> build/lib/cctbx/geometry_restraints creating build/lib/cctbx/geometry copying cctbx/geometry/__init__.py -> build/lib/cctbx/geometry creating build/lib/cctbx/source_generators copying cctbx/source_generators/flex_fwd_h.py -> build/lib/cctbx/source_generators copying cctbx/source_generators/__init__.py -> build/lib/cctbx/source_generators creating build/lib/cctbx/array_family copying cctbx/array_family/__init__.py -> build/lib/cctbx/array_family copying cctbx/array_family/flex.py -> build/lib/cctbx/array_family creating build/lib/cctbx/merging copying cctbx/merging/__init__.py -> build/lib/cctbx/merging copying cctbx/merging/brehm_diederichs.py -> build/lib/cctbx/merging creating build/lib/cctbx/sgtbx copying cctbx/sgtbx/show_cosets.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/reticular_twin_laws.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/__init__.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/pointgroup_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/rational_matrices_point_groups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/sub_lattice_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/subgroups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/reticular_pg_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/plane_groups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/bravais_types.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/cosets.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/lattice_symmetry.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/sys_abs_equiv.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/symbol_confidence.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/literal_description.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/harker.py -> build/lib/cctbx/sgtbx creating build/lib/cctbx/miller copying cctbx/miller/__init__.py -> build/lib/cctbx/miller copying cctbx/miller/reindexing.py -> build/lib/cctbx/miller copying cctbx/miller/display.py -> build/lib/cctbx/miller copying cctbx/miller/tst_reindexing.py -> build/lib/cctbx/miller copying cctbx/miller/tst_map_to_asu_isym.py -> build/lib/cctbx/miller creating build/lib/cctbx/omz copying cctbx/omz/cod_select_and_pickle.py -> build/lib/cctbx/omz copying cctbx/omz/__init__.py -> build/lib/cctbx/omz copying cctbx/omz/dev.py -> build/lib/cctbx/omz copying cctbx/omz/tst_dev.py -> build/lib/cctbx/omz copying cctbx/omz/tst_bfgs.py -> build/lib/cctbx/omz copying cctbx/omz/pdb_dev.py -> build/lib/cctbx/omz copying cctbx/omz/cod_refine.py -> build/lib/cctbx/omz copying cctbx/omz/cif_refine.py -> build/lib/cctbx/omz copying cctbx/omz/tardy_adaptor.py -> build/lib/cctbx/omz copying cctbx/omz/eval_iso_vs_refined.py -> build/lib/cctbx/omz copying cctbx/omz/bfgs.py -> build/lib/cctbx/omz creating build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/__init__.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/flags.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/energies.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/tst_ext.py -> build/lib/cctbx/adp_restraints creating build/lib/cctbx/web copying cctbx/web/__init__.py -> build/lib/cctbx/web copying cctbx/web/explore_symmetry.py -> build/lib/cctbx/web copying cctbx/web/emma.py -> build/lib/cctbx/web copying cctbx/web/change_basis.py -> build/lib/cctbx/web copying cctbx/web/change_setting.py -> build/lib/cctbx/web copying cctbx/web/replay.py -> build/lib/cctbx/web copying cctbx/web/io_utils.py -> build/lib/cctbx/web copying cctbx/web/browse_settings.py -> build/lib/cctbx/web copying cctbx/web/change_hand.py -> build/lib/cctbx/web copying cctbx/web/lattice_symmetry.py -> build/lib/cctbx/web copying cctbx/web/structure_factors.py -> build/lib/cctbx/web copying cctbx/web/all_axes.py -> build/lib/cctbx/web copying cctbx/web/multiple_cell.py -> build/lib/cctbx/web copying cctbx/web/libtbx_help.py -> build/lib/cctbx/web copying cctbx/web/dispatcher.py -> build/lib/cctbx/web copying cctbx/web/cgi_utils.py -> build/lib/cctbx/web copying cctbx/web/iotbx_cif_validate.py -> build/lib/cctbx/web copying cctbx/web/wyckoff.py -> build/lib/cctbx/web copying cctbx/web/shelx.py -> build/lib/cctbx/web copying cctbx/web/structure_factors_pdb.py -> build/lib/cctbx/web copying cctbx/web/phase_o_phrenia.py -> build/lib/cctbx/web copying cctbx/web/frac_cart.py -> build/lib/cctbx/web creating build/lib/cctbx/maptbx copying cctbx/maptbx/fsc_curve.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_interpolation.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_target_and_gradients.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_mask.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_atom_curves.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/__init__.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/segment_and_split_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/refine_scales_errors.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_real_space_refinement_simple.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/prepare_map_for_docking.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/map_symmetry.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/resolution_from_map_and_model.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/box.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/auto_sharpen.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/minimization.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_ccp.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/real_space_refinement_simple.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/servalcat_difference_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/mask.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_asymmetric_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/refine_sharpening.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/qscore.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_peak_volume_estimate.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_qscore.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_MapPeakLocator.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/prepare_map_for_refinement.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/mem.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_bcr.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_interpolation_2.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_loft.py -> build/lib/cctbx/maptbx creating build/lib/cctbx/eltbx copying cctbx/eltbx/distance_based_connectivity.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/wavelengths.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/__init__.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/sasaki.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/henke.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/gaussian_fit.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/tiny_pse.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/van_der_waals_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/formula.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/read_custom_scattering_dict.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/fp_fdp.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/attenuation_coefficient.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/covalent_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/chemical_elements.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/icsd_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/neutron.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/e_scattering.py -> build/lib/cctbx/eltbx creating build/lib/cctbx/neutron copying cctbx/neutron/__init__.py -> build/lib/cctbx/neutron creating build/lib/cctbx/macro_mol copying cctbx/macro_mol/__init__.py -> build/lib/cctbx/macro_mol copying cctbx/macro_mol/rotation_parameters.py -> build/lib/cctbx/macro_mol creating build/lib/cctbx/uctbx copying cctbx/uctbx/gruber_1973_table_1.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/__init__.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/krivy_gruber_1976.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/gruber_1973.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/reduction_base.py -> build/lib/cctbx/uctbx creating build/lib/cctbx/covariance copying cctbx/covariance/__init__.py -> build/lib/cctbx/covariance creating build/lib/cctbx/regression copying cctbx/regression/tst_grm_modifications.py -> build/lib/cctbx/regression copying cctbx/regression/tst_niggli_reduction_cpp.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/lib/cctbx/regression copying cctbx/regression/tst_twin_target.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_merge_equivalents.py -> build/lib/cctbx/regression copying cctbx/regression/tst_triplet_generator.py -> build/lib/cctbx/regression copying cctbx/regression/tst_amplitude_normalisation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_fft_map.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_site_constraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_statistics.py -> build/lib/cctbx/regression copying cctbx/regression/tst_reflection_statistics.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_structure_factors.py -> build/lib/cctbx/regression copying cctbx/regression/tst_direct_space_asu.py -> build/lib/cctbx/regression copying cctbx/regression/tst_create_models_or_maps.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_pickling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_aniso_restraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sf_low_res_accuracy.py -> build/lib/cctbx/regression copying cctbx/regression/tst_mem_2.py -> build/lib/cctbx/regression copying cctbx/regression/tst_reciprocal_space_asu.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_subgroups.py -> build/lib/cctbx/regression copying cctbx/regression/__init__.py -> build/lib/cctbx/regression copying cctbx/regression/tst_expand_to_p1.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/lib/cctbx/regression copying cctbx/regression/tst_pointgroup_tools.py -> build/lib/cctbx/regression copying cctbx/regression/tst_direct_scaling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_math_module.py -> build/lib/cctbx/regression copying cctbx/regression/tst_coordination_sequences.py -> build/lib/cctbx/regression copying cctbx/regression/tst_statistics_graphs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fast_nv1995.py -> build/lib/cctbx/regression copying cctbx/regression/tst_change_basis.py -> build/lib/cctbx/regression copying cctbx/regression/tst_web_change_basis.py -> build/lib/cctbx/regression copying cctbx/regression/tst_weighting_schemes.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_double_step_filtration.py -> build/lib/cctbx/regression copying cctbx/regression/tst_wilson_plot.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_harker.py -> build/lib/cctbx/regression copying cctbx/regression/tst_connectivity.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_lookup_utils.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grouped_data.py -> build/lib/cctbx/regression copying cctbx/regression/tst_find_best_cell.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fcalc_fft_stability.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_modifications_rm.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal_close_packing.py -> build/lib/cctbx/regression copying cctbx/regression/tst_show_cosets.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_target_functors.py -> build/lib/cctbx/regression copying cctbx/regression/tst_r_free_utils.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_constraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal_asu_clusters.py -> build/lib/cctbx/regression copying cctbx/regression/tst_french_wilson.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_constraints_cartesian.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx.py -> build/lib/cctbx/regression copying cctbx/regression/tst_diffuse.py -> build/lib/cctbx/regression copying cctbx/regression/tst_emma.py -> build/lib/cctbx/regression copying cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/lib/cctbx/regression copying cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_f_model.py -> build/lib/cctbx/regression copying cctbx/regression/tst_wavelength_units.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_fast_gradients.py -> build/lib/cctbx/regression copying cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/lib/cctbx/regression copying cctbx/regression/tst_mem.py -> build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_derivatives.py -> build/lib/cctbx/regression copying cctbx/regression/tst_pair_asu_table.py -> build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_krivy_gruber.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_loc_res.py -> build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints_2.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_box.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sampled_model_density.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sphericity.py -> build/lib/cctbx/regression copying cctbx/regression/tst_refine_xray_curvs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_map_is_periodic.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_data_manipulation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_prepare_map_for_docking.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_minimization_failure.py -> build/lib/cctbx/regression copying cctbx/regression/tst_connectivity_allsym.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_mask.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_denominators.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_minimization.py -> build/lib/cctbx/regression creating build/lib/cctbx/command_line copying cctbx/command_line/cod_select_and_pickle.py -> build/lib/cctbx/command_line copying cctbx/command_line/find_reticular_twin_laws.py -> build/lib/cctbx/command_line copying cctbx/command_line/eltbx.show_fp_fdp.py -> build/lib/cctbx/command_line copying cctbx/command_line/__init__.py -> build/lib/cctbx/command_line copying cctbx/command_line/samosa_scale.py -> build/lib/cctbx/command_line copying cctbx/command_line/segment_and_split_map.py -> build/lib/cctbx/command_line copying cctbx/command_line/wavelength_units.py -> build/lib/cctbx/command_line copying cctbx/command_line/subgroups.py -> build/lib/cctbx/command_line copying cctbx/command_line/space_group_info.py -> build/lib/cctbx/command_line copying cctbx/command_line/form_factor_query.py -> build/lib/cctbx/command_line copying cctbx/command_line/diffuse.py -> build/lib/cctbx/command_line copying cctbx/command_line/auto_sharpen.py -> build/lib/cctbx/command_line copying cctbx/command_line/precession_view.py -> build/lib/cctbx/command_line copying cctbx/command_line/euclidean_model_matching.py -> build/lib/cctbx/command_line copying cctbx/command_line/structure_factor_timings.py -> build/lib/cctbx/command_line copying cctbx/command_line/version.py -> build/lib/cctbx/command_line copying cctbx/command_line/qscore.py -> build/lib/cctbx/command_line copying cctbx/command_line/brehm_diederichs.py -> build/lib/cctbx/command_line copying cctbx/command_line/samosa_join.py -> build/lib/cctbx/command_line copying cctbx/command_line/cctbx_test_nightly.py -> build/lib/cctbx/command_line creating build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_direct.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_base.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/__init__.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/misc.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradient_flags.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/algorithm.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_fft.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/manager.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/global_counters.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_fft.py -> build/lib/cctbx/xray/structure_factors creating build/lib/cctbx/xray/observations copying cctbx/xray/observations/__init__.py -> build/lib/cctbx/xray/observations copying cctbx/xray/observations/tst_observations.py -> build/lib/cctbx/xray/observations creating build/lib/cctbx/xray/targets copying cctbx/xray/targets/__init__.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/tst_r1.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/r1.py -> build/lib/cctbx/xray/targets creating build/lib/cctbx/examples/merging copying cctbx/examples/merging/show_results.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/sigma_correction.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/__init__.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/test1.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/task4.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/test_cc_half.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/data_utilities.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/data_subset.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/test_levenberg_sparse.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/tst_permutations.py -> build/lib/cctbx/examples/merging creating build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/__init__.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus creating build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/__init__.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/join.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/scale.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/lib/cctbx/examples/merging/samosa creating build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/__init__.py -> build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/lib/cctbx/source_generators/eltbx creating build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/__init__.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/reference_table.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/lib/cctbx/sgtbx/direct_space_asu creating build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto creating build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_index.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/web_links.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_asu.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/__init__.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/guide_to_notation.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jvx.py -> build/lib/cctbx/web/asu_gallery creating build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_table.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/__init__.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_qmap_02.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_two_atoms.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/bcr.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_adp_refine.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_example.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_vrm2.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_vrm.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/qmap.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/compute_tables.py -> build/lib/cctbx/maptbx/bcr creating build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/rez_rez_grant.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/__init__.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/hydrogen_plots.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/e_scattering_plots.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_kissel.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_approx.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_io.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/format_gaussian_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_cross_validation.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_section61_io.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/combine_fits.py -> build/lib/cctbx/eltbx/development creating build/lib/cctbx/eltbx/xray_scattering copying cctbx/eltbx/xray_scattering/__init__.py -> build/lib/cctbx/eltbx/xray_scattering creating build/lib/cctbx/uctbx/determine_unit_cell copying cctbx/uctbx/determine_unit_cell/__init__.py -> build/lib/cctbx/uctbx/determine_unit_cell creating build/lib/serialtbx/util copying serialtbx/util/time.py -> build/lib/serialtbx/util copying serialtbx/util/__init__.py -> build/lib/serialtbx/util copying serialtbx/util/construct_frame.py -> build/lib/serialtbx/util copying serialtbx/util/energy_scan_notch_finder.py -> build/lib/serialtbx/util creating build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/__init__.py -> build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/max_like.py -> build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/util.py -> build/lib/serialtbx/mono_simulation creating build/lib/serialtbx/detector copying serialtbx/detector/__init__.py -> build/lib/serialtbx/detector copying serialtbx/detector/cspad.py -> build/lib/serialtbx/detector copying serialtbx/detector/jungfrau.py -> build/lib/serialtbx/detector copying serialtbx/detector/rayonix.py -> build/lib/serialtbx/detector copying serialtbx/detector/xtc.py -> build/lib/serialtbx/detector creating build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/metrology.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/generic_detector.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/__init__.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/cspad_detector.py -> build/lib/serialtbx/detector/legacy_metrology creating build/lib/xcif/benchmarks copying xcif/benchmarks/__init__.py -> build/lib/xcif/benchmarks copying xcif/benchmarks/run_benchmarks.py -> build/lib/xcif/benchmarks creating build/lib/xcif/regression copying xcif/regression/tst_pdb_coordinates.py -> build/lib/xcif/regression copying xcif/regression/tst_example_parse.py -> build/lib/xcif/regression copying xcif/regression/tst_parse_verify.py -> build/lib/xcif/regression copying xcif/regression/tst_string_interning.py -> build/lib/xcif/regression copying xcif/regression/__init__.py -> build/lib/xcif/regression copying xcif/regression/tst_gil_release.py -> build/lib/xcif/regression copying xcif/regression/tst_api_compat.py -> build/lib/xcif/regression copying xcif/regression/tst_quoted_string_delimiter.py -> build/lib/xcif/regression copying xcif/regression/tst_bindings.py -> build/lib/xcif/regression copying xcif/regression/tst_memory.py -> build/lib/xcif/regression copying xcif/regression/tst_non_strict_mode.py -> build/lib/xcif/regression copying xcif/regression/tst_semicolon_field_strict.py -> build/lib/xcif/regression copying xcif/regression/tst_iotbx_cif_reader_parity.py -> build/lib/xcif/regression copying xcif/regression/tst_example_tokenize.py -> build/lib/xcif/regression copying xcif/regression/tst_iotbx_cif_reader_engine.py -> build/lib/xcif/regression copying xcif/regression/tst_roundtrip.py -> build/lib/xcif/regression copying xcif/regression/tst_pdb_sf.py -> build/lib/xcif/regression copying xcif/regression/tst_utf8.py -> build/lib/xcif/regression creating build/lib/scitbx/graphics_utils copying scitbx/graphics_utils/__init__.py -> build/lib/scitbx/graphics_utils copying scitbx/graphics_utils/tst.py -> build/lib/scitbx/graphics_utils creating build/lib/scitbx/rigid_body copying scitbx/rigid_body/__init__.py -> build/lib/scitbx/rigid_body copying scitbx/rigid_body/tst.py -> build/lib/scitbx/rigid_body creating build/lib/scitbx/stl copying scitbx/stl/__init__.py -> build/lib/scitbx/stl copying scitbx/stl/set.py -> build/lib/scitbx/stl copying scitbx/stl/tst_map.py -> build/lib/scitbx/stl copying scitbx/stl/tst_vector.py -> build/lib/scitbx/stl copying scitbx/stl/map.py -> build/lib/scitbx/stl copying scitbx/stl/vector.py -> build/lib/scitbx/stl copying scitbx/stl/tst_set.py -> build/lib/scitbx/stl creating build/lib/scitbx/wigner copying scitbx/wigner/__init__.py -> build/lib/scitbx/wigner copying scitbx/wigner/tst_wigner3j.py -> build/lib/scitbx/wigner creating build/lib/scitbx/serialization copying scitbx/serialization/__init__.py -> build/lib/scitbx/serialization creating build/lib/scitbx/sparse copying scitbx/sparse/__init__.py -> build/lib/scitbx/sparse creating build/lib/scitbx/lstbx copying scitbx/lstbx/__init__.py -> build/lib/scitbx/lstbx copying scitbx/lstbx/normal_eqns_solving.py -> build/lib/scitbx/lstbx copying scitbx/lstbx/normal_eqns.py -> build/lib/scitbx/lstbx creating build/lib/scitbx/examples copying scitbx/examples/minimizer_comparisons.py -> build/lib/scitbx/examples copying scitbx/examples/flex_grid.py -> build/lib/scitbx/examples copying scitbx/examples/__init__.py -> build/lib/scitbx/examples copying scitbx/examples/functions.py -> build/lib/scitbx/examples copying scitbx/examples/lbfgs_linear_least_squares_fit.py -> build/lib/scitbx/examples copying scitbx/examples/flex_array_loops.py -> build/lib/scitbx/examples copying scitbx/examples/integrating_a_weighted_sinc_function.py -> build/lib/scitbx/examples copying scitbx/examples/immoptibox_ports.py -> build/lib/scitbx/examples copying scitbx/examples/principal_axes_of_inertia.py -> build/lib/scitbx/examples copying scitbx/examples/rigid_body_refinement_core.py -> build/lib/scitbx/examples copying scitbx/examples/lbfgs_recipe.py -> build/lib/scitbx/examples copying scitbx/examples/bootstrap.py -> build/lib/scitbx/examples copying scitbx/examples/chebyshev_lsq_example.py -> build/lib/scitbx/examples creating build/lib/scitbx/glmtbx copying scitbx/glmtbx/__init__.py -> build/lib/scitbx/glmtbx creating build/lib/scitbx/boost_python copying scitbx/boost_python/__init__.py -> build/lib/scitbx/boost_python creating build/lib/scitbx/dtmin copying scitbx/dtmin/realsymmetricpseudoinverse.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/__init__.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/bounds.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/refinebase.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/min_logging.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/reparams.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/minimizer.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/compulsory.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/optional.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/twisted_gaussian.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/auxiliary.py -> build/lib/scitbx/dtmin creating build/lib/scitbx/matrix copying scitbx/matrix/__init__.py -> build/lib/scitbx/matrix copying scitbx/matrix/row_echelon.py -> build/lib/scitbx/matrix creating build/lib/scitbx/source_generators copying scitbx/source_generators/flex_fwd_h.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/__init__.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/lbfgs_fem.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/utils.py -> build/lib/scitbx/source_generators creating build/lib/scitbx/array_family copying scitbx/array_family/__init__.py -> build/lib/scitbx/array_family copying scitbx/array_family/shared.py -> build/lib/scitbx/array_family copying scitbx/array_family/flex.py -> build/lib/scitbx/array_family creating build/lib/scitbx/suffixtree copying scitbx/suffixtree/__init__.py -> build/lib/scitbx/suffixtree copying scitbx/suffixtree/single.py -> build/lib/scitbx/suffixtree creating build/lib/scitbx/iso_surface copying scitbx/iso_surface/__init__.py -> build/lib/scitbx/iso_surface copying scitbx/iso_surface/tst_iso_surface.py -> build/lib/scitbx/iso_surface creating build/lib/scitbx/python_utils copying scitbx/python_utils/command_line.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/__init__.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/misc.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/graph_tools.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/robust_statistics.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/tst_robust.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/random_transform.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/signal_utils.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/dicts.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/tst_graph.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/tst_random_transform.py -> build/lib/scitbx/python_utils creating build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_mpi_split_evaluator.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_func_free_line_search.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/__init__.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_lbfgs_fem.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_curvatures.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_ext.py -> build/lib/scitbx/lbfgs creating build/lib/scitbx/linalg copying scitbx/linalg/ext.py -> build/lib/scitbx/linalg copying scitbx/linalg/__init__.py -> build/lib/scitbx/linalg copying scitbx/linalg/svd.py -> build/lib/scitbx/linalg copying scitbx/linalg/householder.py -> build/lib/scitbx/linalg copying scitbx/linalg/eigensystem.py -> build/lib/scitbx/linalg creating build/lib/scitbx/tests copying scitbx/tests/direct_search_simulated_annealing.py -> build/lib/scitbx/tests copying scitbx/tests/tst_r3_utils.py -> build/lib/scitbx/tests copying scitbx/tests/tst_cubicle_neighbors.py -> build/lib/scitbx/tests copying scitbx/tests/differential_evolution.py -> build/lib/scitbx/tests copying scitbx/tests/__init__.py -> build/lib/scitbx/tests copying scitbx/tests/golden_section_search.py -> build/lib/scitbx/tests copying scitbx/tests/tst_smoothing.py -> build/lib/scitbx/tests copying scitbx/tests/tst_genetic_algorithm_with_mp.py -> build/lib/scitbx/tests copying scitbx/tests/tst_minimizer_lbfgs_general.py -> build/lib/scitbx/tests copying scitbx/tests/tst_regular_grid_on_unit_sphere.py -> build/lib/scitbx/tests copying scitbx/tests/simplex.py -> build/lib/scitbx/tests copying scitbx/tests/tst_basic.py -> build/lib/scitbx/tests creating build/lib/scitbx/slatec copying scitbx/slatec/__init__.py -> build/lib/scitbx/slatec creating build/lib/scitbx/graph copying scitbx/graph/rigidity_matrix_symbolic.py -> build/lib/scitbx/graph copying scitbx/graph/rigidity.py -> build/lib/scitbx/graph copying scitbx/graph/__init__.py -> build/lib/scitbx/graph copying scitbx/graph/tst_tardy_tree_find_paths.py -> build/lib/scitbx/graph copying scitbx/graph/tst_utils.py -> build/lib/scitbx/graph copying scitbx/graph/tst_tardy_tree.py -> build/lib/scitbx/graph copying scitbx/graph/test_cases_tardy_pdb.py -> build/lib/scitbx/graph copying scitbx/graph/tardy_tree.py -> build/lib/scitbx/graph copying scitbx/graph/tst_rigidity.py -> build/lib/scitbx/graph copying scitbx/graph/utils.py -> build/lib/scitbx/graph creating build/lib/scitbx/error copying scitbx/error/__init__.py -> build/lib/scitbx/error copying scitbx/error/tst_error.py -> build/lib/scitbx/error creating build/lib/scitbx/stdlib copying scitbx/stdlib/__init__.py -> build/lib/scitbx/stdlib creating build/lib/scitbx/misc copying scitbx/misc/__init__.py -> build/lib/scitbx/misc creating build/lib/scitbx/random copying scitbx/random/__init__.py -> build/lib/scitbx/random creating build/lib/scitbx/line_search copying scitbx/line_search/__init__.py -> build/lib/scitbx/line_search creating build/lib/scitbx/command_line copying scitbx/command_line/__init__.py -> build/lib/scitbx/command_line copying scitbx/command_line/generate_error_h.py -> build/lib/scitbx/command_line copying scitbx/command_line/histogram.py -> build/lib/scitbx/command_line copying scitbx/command_line/show_exp_times.py -> build/lib/scitbx/command_line copying scitbx/command_line/show_sizes.py -> build/lib/scitbx/command_line copying scitbx/command_line/unicode_examples.py -> build/lib/scitbx/command_line copying scitbx/command_line/apply_tapenade_hints.py -> build/lib/scitbx/command_line creating build/lib/scitbx/math copying scitbx/math/fit_quadratic_function.py -> build/lib/scitbx/math copying scitbx/math/fit_peak.py -> build/lib/scitbx/math copying scitbx/math/scale_curves.py -> build/lib/scitbx/math copying scitbx/math/tst_2d_zernike.py -> build/lib/scitbx/math copying scitbx/math/tst_bessel_zeros.py -> build/lib/scitbx/math copying scitbx/math/sphere_sphere_intersection.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_400.py -> build/lib/scitbx/math copying scitbx/math/ext.py -> build/lib/scitbx/math copying scitbx/math/tst_so3_lie_algebra.py -> build/lib/scitbx/math copying scitbx/math/__init__.py -> build/lib/scitbx/math copying scitbx/math/tst_undirected_graph.py -> build/lib/scitbx/math copying scitbx/math/multiple_superposition.py -> build/lib/scitbx/math copying scitbx/math/distributions.py -> build/lib/scitbx/math copying scitbx/math/gaussian_fit.py -> build/lib/scitbx/math copying scitbx/math/curve_fitting.py -> build/lib/scitbx/math copying scitbx/math/undirected_graph.py -> build/lib/scitbx/math copying scitbx/math/spe.py -> build/lib/scitbx/math copying scitbx/math/farey.py -> build/lib/scitbx/math copying scitbx/math/besselk.py -> build/lib/scitbx/math copying scitbx/math/tst_zernike_mom.py -> build/lib/scitbx/math copying scitbx/math/clustering.py -> build/lib/scitbx/math copying scitbx/math/tst_zernike.py -> build/lib/scitbx/math copying scitbx/math/euler_angles.py -> build/lib/scitbx/math copying scitbx/math/periodogram.py -> build/lib/scitbx/math copying scitbx/math/des_3_100_13.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_900_ylm.py -> build/lib/scitbx/math copying scitbx/math/gaussian.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_900.py -> build/lib/scitbx/math copying scitbx/math/breakpoint.py -> build/lib/scitbx/math copying scitbx/math/cubic_spline.py -> build/lib/scitbx/math copying scitbx/math/so3_lie_algebra.py -> build/lib/scitbx/math copying scitbx/math/incremental_SO3_sampling.py -> build/lib/scitbx/math copying scitbx/math/minimum_covering_ellipsoid.py -> build/lib/scitbx/math copying scitbx/math/chebyshev_lsq_fit.py -> build/lib/scitbx/math copying scitbx/math/lefebvre.py -> build/lib/scitbx/math copying scitbx/math/tst_multivariate_moments.py -> build/lib/scitbx/math copying scitbx/math/superpose.py -> build/lib/scitbx/math copying scitbx/math/des_3_240_21.py -> build/lib/scitbx/math copying scitbx/math/zernike_align_fft.py -> build/lib/scitbx/math copying scitbx/math/gumbel.py -> build/lib/scitbx/math copying scitbx/math/sieve_of_eratosthenes.py -> build/lib/scitbx/math creating build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/featherstone.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/body_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/__init__.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_energy_plots.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/wx_tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/spatial_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/joint_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/make_bundles.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_basic.py -> build/lib/scitbx/rigid_body/essence creating build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_singular.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/featherstone.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/__init__.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion_hard.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_spherical_refinement.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_featherstone.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_utils.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_simulation.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_free_motion.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_molecules.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/free_motion_reference_impl.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/utils.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_molecules.py -> build/lib/scitbx/rigid_body/proto creating build/lib/scitbx/sparse/boost_python copying scitbx/sparse/boost_python/__init__.py -> build/lib/scitbx/sparse/boost_python creating build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/__init__.py -> build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/tst_sparse.py -> build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/tst_lu_factorization.py -> build/lib/scitbx/sparse/tests creating build/lib/scitbx/lstbx/boost_python copying scitbx/lstbx/boost_python/__init__.py -> build/lib/scitbx/lstbx/boost_python creating build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/__init__.py -> build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/test_problems.py -> build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/tst_normal_equations.py -> build/lib/scitbx/lstbx/tests creating build/lib/scitbx/lstbx/benchmarks copying scitbx/lstbx/benchmarks/__init__.py -> build/lib/scitbx/lstbx/benchmarks creating build/lib/scitbx/examples/bevington copying scitbx/examples/bevington/__init__.py -> build/lib/scitbx/examples/bevington copying scitbx/examples/bevington/silver.py -> build/lib/scitbx/examples/bevington creating build/lib/scitbx/glmtbx/boost_python copying scitbx/glmtbx/boost_python/__init__.py -> build/lib/scitbx/glmtbx/boost_python creating build/lib/scitbx/glmtbx/tests copying scitbx/glmtbx/tests/__init__.py -> build/lib/scitbx/glmtbx/tests copying scitbx/glmtbx/tests/tst.py -> build/lib/scitbx/glmtbx/tests creating build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_basic.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/__init__.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_twisted.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_booth.py -> build/lib/scitbx/dtmin/regression creating build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/__init__.py -> build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/tst_householder.py -> build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/tst_row_echelon.py -> build/lib/scitbx/matrix/tests creating build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_functors.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/__init__.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_apply.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_all.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_reductions.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/operator_functor_info.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_algebras.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_std_imports.py -> build/lib/scitbx/source_generators/array_family creating build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/__init__.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_numpy_bridge.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_flex.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_shared.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_smart_selection.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/regression_test.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_flex_argument_passing.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py -> build/lib/scitbx/array_family/boost_python creating build/lib/scitbx/array_family/accessors copying scitbx/array_family/accessors/__init__.py -> build/lib/scitbx/array_family/accessors creating build/lib/scitbx/array_family/detail copying scitbx/array_family/detail/__init__.py -> build/lib/scitbx/array_family/detail creating build/lib/scitbx/suffixtree/boost_python copying scitbx/suffixtree/boost_python/__init__.py -> build/lib/scitbx/suffixtree/boost_python creating build/lib/scitbx/suffixtree/test copying scitbx/suffixtree/test/__init__.py -> build/lib/scitbx/suffixtree/test copying scitbx/suffixtree/test/tst_single.py -> build/lib/scitbx/suffixtree/test creating build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/__init__.py -> build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/run.py -> build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/twisted_gaussian.py -> build/lib/scitbx/lbfgs/dev creating build/lib/scitbx/linalg/boost_python copying scitbx/linalg/boost_python/__init__.py -> build/lib/scitbx/linalg/boost_python creating build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/__init__.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_lapack_svd.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_matrix.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_cholesky.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_svd.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_lapack_dsyev.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_eigensystem.py -> build/lib/scitbx/linalg/tests creating build/lib/scitbx/random/boost_python copying scitbx/random/boost_python/__init__.py -> build/lib/scitbx/random/boost_python creating build/lib/scitbx/random/tests copying scitbx/random/tests/__init__.py -> build/lib/scitbx/random/tests copying scitbx/random/tests/tst_random.py -> build/lib/scitbx/random/tests creating build/lib/scitbx/math/boost_python copying scitbx/math/boost_python/__init__.py -> build/lib/scitbx/math/boost_python creating build/lib/scitbx/math/dev copying scitbx/math/dev/__init__.py -> build/lib/scitbx/math/dev creating build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gaussian.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gcd.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_curve_fitting.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_bessel.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/__init__.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_angle_derivative.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_resample.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_tetrahedron.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_similarity_indices.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_fit_quadratic_function.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_fit_peak.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_halton.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_cubic_equation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_quadrature.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_euler_angles.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_periodogram.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_orthonormal_basis.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_exp_functions.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_line_search.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_r3_rotation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_g_function.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_weighted_correlation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_superpose.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_dmatrix.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_uniform_rotation_matrix.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_clustering.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_math.py -> build/lib/scitbx/math/tests creating build/lib/scitbx/math/erf copying scitbx/math/erf/__init__.py -> build/lib/scitbx/math/erf creating build/lib/mmtbx/masks copying mmtbx/masks/__init__.py -> build/lib/mmtbx/masks copying mmtbx/masks/tst_asu_mask.py -> build/lib/mmtbx/masks copying mmtbx/masks/tst_masks.py -> build/lib/mmtbx/masks creating build/lib/mmtbx/tls copying mmtbx/tls/perm11.py -> build/lib/mmtbx/tls copying mmtbx/tls/command_line.py -> build/lib/mmtbx/tls copying mmtbx/tls/decompose.py -> build/lib/mmtbx/tls copying mmtbx/tls/__init__.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm15.py -> build/lib/mmtbx/tls copying mmtbx/tls/optimise_amplitudes.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm12.py -> build/lib/mmtbx/tls copying mmtbx/tls/ladp.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm13.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm14.py -> build/lib/mmtbx/tls copying mmtbx/tls/tools.py -> build/lib/mmtbx/tls copying mmtbx/tls/tls_as_xyz.py -> build/lib/mmtbx/tls copying mmtbx/tls/analysis.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm10.py -> build/lib/mmtbx/tls copying mmtbx/tls/utils.py -> build/lib/mmtbx/tls creating build/lib/mmtbx/model copying mmtbx/model/__init__.py -> build/lib/mmtbx/model copying mmtbx/model/statistics.py -> build/lib/mmtbx/model copying mmtbx/model/restraints.py -> build/lib/mmtbx/model copying mmtbx/model/model.py -> build/lib/mmtbx/model copying mmtbx/model/utils.py -> build/lib/mmtbx/model creating build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/__init__.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/tst_rcsb_entry_request.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/rcsb_entry_request.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/rcsb_web_services.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/tst_rcsb_web_services.py -> build/lib/mmtbx/wwpdb creating build/lib/mmtbx/probe copying mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> build/lib/mmtbx/probe copying mmtbx/probe/__init__.py -> build/lib/mmtbx/probe copying mmtbx/probe/tst_mmtbx_probe_ext.py -> build/lib/mmtbx/probe copying mmtbx/probe/AtomTypes.py -> build/lib/mmtbx/probe copying mmtbx/probe/Helpers.py -> build/lib/mmtbx/probe creating build/lib/mmtbx/den copying mmtbx/den/refinement.py -> build/lib/mmtbx/den copying mmtbx/den/__init__.py -> build/lib/mmtbx/den copying mmtbx/den/plot_weights.py -> build/lib/mmtbx/den creating build/lib/mmtbx/disorder copying mmtbx/disorder/analyze_model.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/__init__.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst_analyze_model.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst_backbone.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/backbone.py -> build/lib/mmtbx/disorder creating build/lib/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/tst_rotamer_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/__init__.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/rotamer_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/graphics.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/nqh.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/n_dim_table.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/sidechain_angles.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval_deprecated.py -> build/lib/mmtbx/rotamer creating build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_approx_zn.py -> build/lib/mmtbx/ions copying mmtbx/ions/build.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_geometries.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_k.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_symmetry_axis.py -> build/lib/mmtbx/ions copying mmtbx/ions/__init__.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_ca.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_validate_ca.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_environment.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_mg.py -> build/lib/mmtbx/ions copying mmtbx/ions/geometry.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_ca_svm.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_utils.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_validate_mg.py -> build/lib/mmtbx/ions copying mmtbx/ions/identify.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pickle.py -> build/lib/mmtbx/ions copying mmtbx/ions/halides.py -> build/lib/mmtbx/ions copying mmtbx/ions/environment.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_parameters.py -> build/lib/mmtbx/ions copying mmtbx/ions/utils.py -> build/lib/mmtbx/ions creating build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_03.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_01.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_04.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_00.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/pair_interaction.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/__init__.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_05.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_02.py -> build/lib/mmtbx/pair_interaction creating build/lib/mmtbx/dynamics copying mmtbx/dynamics/__init__.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/cartesian_dynamics.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/constants.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/tst_sa.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/ensemble_cd.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/tst_cartesian_dynamics.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/simulated_annealing.py -> build/lib/mmtbx/dynamics creating build/lib/mmtbx/ligands copying mmtbx/ligands/tst_ready_set_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/rdkit_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/__init__.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/ready_set_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/hierarchy_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/electrons.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/tst_electron_scripting.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/ready_set_basics.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/chemistry.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/xtal_screens.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/tst_xtal_screens.py -> build/lib/mmtbx/ligands creating build/lib/mmtbx/ringer copying mmtbx/ringer/tst_emringer.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_rolling.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_rscc.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/emringer.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/__init__.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_scoring.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/tst_em_rscc.py -> build/lib/mmtbx/ringer creating build/lib/mmtbx/kinemage copying mmtbx/kinemage/__init__.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/tst_validation.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/ribbon_rendering.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/nrubs.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/validation.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/ribbons.py -> build/lib/mmtbx/kinemage creating build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/c_beta.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/xtb_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/external.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qi_utils.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_interface.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/__init__.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_geo_file_parsing.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate2.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/orca_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/mopac_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/reference.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/base_qm_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_ramachandran.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_replace_in_place.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/afitt.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_c_beta_restraints.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/geo_file_parsing.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/ramachandran.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_xtb_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qm_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_restraints_manager.py -> build/lib/mmtbx/geometry_restraints creating build/lib/mmtbx/polygon copying mmtbx/polygon/__init__.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/tst.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/tst_polygon_data.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/tst_gui.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/output.py -> build/lib/mmtbx/polygon creating build/lib/mmtbx/geometry copying mmtbx/geometry/asa.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/topology.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/__init__.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/shared_types.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/sphere_surface_sampling.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/indexing.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/clash.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/altloc.py -> build/lib/mmtbx/geometry creating build/lib/mmtbx/solvent copying mmtbx/solvent/__init__.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/ordered_solvent.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/ensemble_ordered_solvent.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/map_to_water.py -> build/lib/mmtbx/solvent creating build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/__init__.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_flat_nonuniform.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/kbu_refinery.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_mosaic.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example2.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/mosaic.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/f_model_all_scales.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_aniso_scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> build/lib/mmtbx/bulk_solvent creating build/lib/mmtbx/maps copying mmtbx/maps/fobs_minus_fobs_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/__init__.py -> build/lib/mmtbx/maps copying mmtbx/maps/fem.py -> build/lib/mmtbx/maps copying mmtbx/maps/map_model_cc.py -> build/lib/mmtbx/maps copying mmtbx/maps/correlation.py -> build/lib/mmtbx/maps copying mmtbx/maps/kick.py -> build/lib/mmtbx/maps copying mmtbx/maps/composite_omit_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_correlation.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_2.py -> build/lib/mmtbx/maps copying mmtbx/maps/mtriage.py -> build/lib/mmtbx/maps copying mmtbx/maps/superpose.py -> build/lib/mmtbx/maps copying mmtbx/maps/polder.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_3.py -> build/lib/mmtbx/maps copying mmtbx/maps/utils.py -> build/lib/mmtbx/maps copying mmtbx/maps/xtrapol8.py -> build/lib/mmtbx/maps creating build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_search.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/__init__.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_restraints_group_list.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_params.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_utils.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/cartesian_restraints.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/tncs.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ligands.py -> build/lib/mmtbx/ncs creating build/lib/mmtbx/suitename copying mmtbx/suitename/dualparse.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suiteninput.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitename.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/__init__.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitealyze.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitenout.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/diangle.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitenamedefs.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/mainchain.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suites.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suiteninit.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/transdent.py -> build/lib/mmtbx/suitename creating build/lib/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/__init__.py -> build/lib/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/tst.py -> build/lib/mmtbx/atomic_environment_vectors creating build/lib/mmtbx/scaling copying mmtbx/scaling/absence_likelihood.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_mean_f_rms_f.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/relative_wilson.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/matthews.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absences.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/outlier_plots.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/remove_outliers.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/ta_alpha_beta_calc.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/thorough_outlier_test.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/__init__.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_bayesian_estimator.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/pair_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/data_statistics.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_plan_sad_experiment.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/pre_scale.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/make_param.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_sigmaa.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_xtriage.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/massage_twin_detwin_data.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_outlier.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/twin_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_absences.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/basic_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/mean_f_rms_f.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/plan_sad_experiment.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/fa_estimation.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_massage_data.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/random_omit.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/outlier_rejection.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absolute_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/xtriage.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/twmad_scale.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/relative_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/sigmaa_estimation.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_xtriage_twin_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/bayesian_estimator.py -> build/lib/mmtbx/scaling creating build/lib/mmtbx/max_lik copying mmtbx/max_lik/__init__.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/tst_max_lik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/maxlik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/tst_maxlik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/max_like_non_uniform.py -> build/lib/mmtbx/max_lik creating build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/__init__.py -> build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/tst.py -> build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/cif_parser.py -> build/lib/mmtbx/chemical_components creating build/lib/mmtbx/density_modification copying mmtbx/density_modification/__init__.py -> build/lib/mmtbx/density_modification copying mmtbx/density_modification/tst_density_modification.py -> build/lib/mmtbx/density_modification creating build/lib/mmtbx/nci copying mmtbx/nci/hbond.py -> build/lib/mmtbx/nci copying mmtbx/nci/__init__.py -> build/lib/mmtbx/nci copying mmtbx/nci/skew_kurt_plot.py -> build/lib/mmtbx/nci copying mmtbx/nci/data_filtering.py -> build/lib/mmtbx/nci copying mmtbx/nci/tst_hbond.py -> build/lib/mmtbx/nci creating build/lib/mmtbx/utils copying mmtbx/utils/rotatable_bonds.py -> build/lib/mmtbx/utils copying mmtbx/utils/__init__.py -> build/lib/mmtbx/utils copying mmtbx/utils/ntc.py -> build/lib/mmtbx/utils copying mmtbx/utils/grid2d.py -> build/lib/mmtbx/utils copying mmtbx/utils/fab_elbow_angle.py -> build/lib/mmtbx/utils copying mmtbx/utils/tst_switch_rotamers.py -> build/lib/mmtbx/utils creating build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/conformation_dependent_restraints.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_server.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/mmtbx_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_selection.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/pdb_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_setup.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/cif_triage.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/__init__.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_deuterium_terminii.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_types.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_paral_geo.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/geostd_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/correct_hydrogen_geometries.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/bondlength_defaults.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rotamer_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/rotamer_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_all_cif_files.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_mixins.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_4.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/conv_v2_v3.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_user_supplied_library.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_superpose_ideal.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/hydrogen_restrictions.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_protein_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_triage.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_chg.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/server.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_dna_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_linking.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_coordination.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/cif_types.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_5.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_correct_hydrogens.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_idealized_aa.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_3.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/idealized_aa.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_2.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_metal_coordination.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_carbo_linking.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_hand.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_neutron_distance.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_motif.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_chiral_values.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> build/lib/mmtbx/monomer_library creating build/lib/mmtbx/real_space copying mmtbx/real_space/__init__.py -> build/lib/mmtbx/real_space copying mmtbx/real_space/tst.py -> build/lib/mmtbx/real_space creating build/lib/mmtbx/refinement copying mmtbx/refinement/orca.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/select_best_starting_model.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/__init__.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_group_2.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/data.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_anomalous_scatterer_groups.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/flip_peptide_side_chain.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/geometry_minimization.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization_monitor.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/weights.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/refinement_flags.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/calculators.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/energy_monitor.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/inspect_tardy_trajectory.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/targets.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_misc.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_select_best_starting_model.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/anomalous_scatterer_groups.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/print_statistics.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/group.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_occupancy_selections.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/weights_params.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tardy.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_group.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/restraints.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/wrappers.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization_ncs_constraints.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_refinement_flags.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_real_space_simple.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/rigid_body.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/adp_refinement.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/utils.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_fit_rotamers.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/occupancies.py -> build/lib/mmtbx/refinement creating build/lib/mmtbx/sisa copying mmtbx/sisa/__init__.py -> build/lib/mmtbx/sisa creating build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/regularize_from_pdb.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/proteins.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_insertion_codes.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/find_ss_from_ca.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/__init__.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_segid.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/secondary_structure_params.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/nucleic_acids.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/ss_validation.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/utils.py -> build/lib/mmtbx/secondary_structure creating build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_esd.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mutli_residue.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/histidines.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hydrogen_bonding.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/__init__.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/LinkedResidues.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/check_cdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/altloc_weighting.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_enol_peptide.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_svl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_03.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/density_dependent_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rotamers.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_omega_cdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_setup.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/bond_angle_registry.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hpdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/sf4_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/enol_peptide_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/nucleotides.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_hpdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/testing_utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/metal_coordination_library.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_01.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_base_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_02.py -> build/lib/mmtbx/conformation_dependent_library creating build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_coefficients.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_8.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_validate_H.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_7.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_10.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/__init__.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_8.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_6.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/validate_H.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_6.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/connectivity.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_connectivity.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/specialised_hydrogen_atoms.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/neutron_utils.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_11.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_9.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_7.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_9.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_minimize.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/parameterization.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/build_hydrogens.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_time.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/riding.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_const_dihedral.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/find.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/reduce_hydrogen.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_manager.py -> build/lib/mmtbx/hydrogens creating build/lib/mmtbx/reduce copying mmtbx/reduce/Movers.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/__init__.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/tst_mmtbx_reduce_ext.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/InteractionGraph.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/Optimizers.py -> build/lib/mmtbx/reduce creating build/lib/mmtbx/validation copying mmtbx/validation/convert_lists.py -> build/lib/mmtbx/validation copying mmtbx/validation/experimental.py -> build/lib/mmtbx/validation copying mmtbx/validation/clashscore2.py -> build/lib/mmtbx/validation copying mmtbx/validation/cablam.py -> build/lib/mmtbx/validation copying mmtbx/validation/analyze_peptides.py -> build/lib/mmtbx/validation copying mmtbx/validation/cbetadev.py -> build/lib/mmtbx/validation copying mmtbx/validation/holton_geometry_validation.py -> build/lib/mmtbx/validation copying mmtbx/validation/__init__.py -> build/lib/mmtbx/validation copying mmtbx/validation/comprehensive_residue.py -> build/lib/mmtbx/validation copying mmtbx/validation/cbd_utils.py -> build/lib/mmtbx/validation copying mmtbx/validation/datasets.py -> build/lib/mmtbx/validation copying mmtbx/validation/chain_comparison.py -> build/lib/mmtbx/validation copying mmtbx/validation/validate_ligands.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/graphics.py -> build/lib/mmtbx/validation copying mmtbx/validation/waters.py -> build/lib/mmtbx/validation copying mmtbx/validation/fav_lists.py -> build/lib/mmtbx/validation copying mmtbx/validation/model_properties.py -> build/lib/mmtbx/validation copying mmtbx/validation/sequence.py -> build/lib/mmtbx/validation copying mmtbx/validation/undowser.py -> build/lib/mmtbx/validation copying mmtbx/validation/clashscore.py -> build/lib/mmtbx/validation copying mmtbx/validation/comparama.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_PRO_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/mp_validate_bonds.py -> build/lib/mmtbx/validation copying mmtbx/validation/restraints.py -> build/lib/mmtbx/validation copying mmtbx/validation/undowser2.py -> build/lib/mmtbx/validation copying mmtbx/validation/rna_validate.py -> build/lib/mmtbx/validation copying mmtbx/validation/barbed_wire_analysis.py -> build/lib/mmtbx/validation copying mmtbx/validation/rama_z.py -> build/lib/mmtbx/validation copying mmtbx/validation/ensembles.py -> build/lib/mmtbx/validation copying mmtbx/validation/omegalyze.py -> build/lib/mmtbx/validation copying mmtbx/validation/ligands.py -> build/lib/mmtbx/validation copying mmtbx/validation/rotalyze.py -> build/lib/mmtbx/validation copying mmtbx/validation/phi_psi_2_data.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_others_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/utils.py -> build/lib/mmtbx/validation copying mmtbx/validation/ramalyze.py -> build/lib/mmtbx/validation creating build/lib/mmtbx/twinning copying mmtbx/twinning/probabalistic_detwinning.py -> build/lib/mmtbx/twinning copying mmtbx/twinning/__init__.py -> build/lib/mmtbx/twinning copying mmtbx/twinning/twin_f_model.py -> build/lib/mmtbx/twinning creating build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/all_his.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/__init__.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/rotamer_manager.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/tst.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/sample_rotamers.py -> build/lib/mmtbx/idealized_aa_residues creating build/lib/mmtbx/ias copying mmtbx/ias/__init__.py -> build/lib/mmtbx/ias copying mmtbx/ias/tst_ias.py -> build/lib/mmtbx/ias creating build/lib/mmtbx/alignment copying mmtbx/alignment/__init__.py -> build/lib/mmtbx/alignment creating build/lib/mmtbx/regression copying mmtbx/regression/tst_chain_comparison.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_flipping_his.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_add_arrows_on_plot.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_pdbtools.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_domains_from_pae.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_domains_from_pae_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_and_dm.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_custom_bond.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_schrodinger_interface.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_box.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_lrv.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_special_term_at_end.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rigid_bond_test.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_clashes.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ringer.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_switch.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_prune_model.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_scattering_table.py -> build/lib/mmtbx/regression copying mmtbx/regression/__init__.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_geo_min_restraints_phil.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_multi_residue_class.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_arginine_geometry.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_timeout.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_apply_cif_restraints.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_refine_anomalous_substructure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ncs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ss_structure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_process_predicted_model.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_table_one.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mtz2map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ss_structure_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cis_trans_peptide_link.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_ccs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_loop_closure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_holton_geometry_validation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_map_model_cc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_geometry_minimization.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rank_scale_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_3.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_vs_sequence.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_probe.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_minimize_chain.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ligand_ncs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ss_validation_long_chainids.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_regularize_from_pdb_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cc_star.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_dynamics_cli.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_regularize_from_pdb.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_vs_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_command_line_input.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rdkit_utils_fragmentation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_utils.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_real_space_correlation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_cryoem_resolution.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_metal_link_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ml_estimate.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_4.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_add_h_to_water.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_maps_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_scattering_type_registry.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_altloc_remediate.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ribbons.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ordered_solvent.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_anomalous_substructure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_superpose.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_alignment.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sequence_validation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_isomorphous_difference_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_angle.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sampled_model_density.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_origin_ids.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_adp_restraints.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sort_hetatms.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_psi_phi_extraction.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_msa.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_map_type_parser.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validation_summary.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_chain_comparison_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_altloc_chain_break.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_examples.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_process_predicted_model_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_no_cryst1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_fd.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands_3.py -> build/lib/mmtbx/regression copying mmtbx/regression/make_fake_anomalous_data.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_statistics_output.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_models_to_from_chains.py -> build/lib/mmtbx/regression creating build/lib/mmtbx/rsr copying mmtbx/rsr/__init__.py -> build/lib/mmtbx/rsr copying mmtbx/rsr/tst.py -> build/lib/mmtbx/rsr creating build/lib/mmtbx/command_line copying mmtbx/command_line/probescore_ligand.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validation_summary.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rebuild_cablam_cache.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cc_star.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/sort_hetatms.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/development_aev.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fobs_minus_fobs_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/where_is_that_cif_file.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reciprocal_space_arrays.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mon_lib_cif_triage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/secondary_structure_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/chiral_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/hbond.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/clashscore2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cablam.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/debug_riding.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/select_best_starting_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_model_distances.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdb_interpretation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/matthews.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/f000.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/suitename.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/probe2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reduce2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdb_atom_selection.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/emringer.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cbetadev.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_to_model_histogram.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/quantum_interface.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reduce_cryoem_resolution.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/holton_geometry_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/remove_outliers.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_tls_groups.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdbtools.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/__init__.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/emringer_score.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ss_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/process_predicted_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/kinemage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mtz2map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rigid_bond_test.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_comparison.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/altloc_remediate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validate_ligands.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_puckers.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/maps.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/geometry_minimization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cif_as_mtz.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/distance_difference.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mp_geo.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_to_structure_factors.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/refine_anomalous_substructure.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ligand_restraints_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/water_b_factors.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/suitename_old.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_box.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/next_gen_residue_typing.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/angle.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/real_space_correlation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/arginine_geometry.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rank_scale_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_sequence.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_data.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fake_f_obs.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/undowser.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fab_elbow_angle.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/taam_minus_iam.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/grow_density.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/nonbonded_overlaps.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/super.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/estimate_bijvoet_ratio.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mask.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/table_one.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/clashscore.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/comparama.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/plan_sad_experiment.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rebuild_rotarama_cache.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/prune_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/density_modification.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mp_validate_bonds.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/molprobity.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/r_factor_statistics.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fetch_pdb.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/electrons.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/verify_mon_lib_data.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/secondary_structure_restraints.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/undowser2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cablam_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls_as_xyz.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/barbed_wire_analysis.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rama_z.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_suites.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/real_space_diff_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fmodel.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/apply_ncs_to_ligand.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/omegalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/development_fem.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/prepare_pdb_deposition.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xtriage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ribbons.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rotalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/superpose.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_peaks_holes.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/polder.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/atom_valence_simple.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/massage_data.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/perigee.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ringer.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls_analysis.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/show_r_factors_by_shell.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/hydrogenate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validate_H_cl_app.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xtrapol8.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/next_gen_atom_typing.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xmanip.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/search_pdb_symmetry.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/models_as_chains.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_bonds.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/maximum_entropy_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ramalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_residue_in_pdb.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/dynamics.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/sisa.py -> build/lib/mmtbx/command_line creating build/lib/mmtbx/programs copying mmtbx/programs/probescore_ligand.py -> build/lib/mmtbx/programs copying mmtbx/programs/atom_selection.py -> build/lib/mmtbx/programs copying mmtbx/programs/chiral_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/hbond.py -> build/lib/mmtbx/programs copying mmtbx/programs/clashscore2.py -> build/lib/mmtbx/programs copying mmtbx/programs/cablam.py -> build/lib/mmtbx/programs copying mmtbx/programs/debug_riding.py -> build/lib/mmtbx/programs copying mmtbx/programs/fetch.py -> build/lib/mmtbx/programs copying mmtbx/programs/matthews.py -> build/lib/mmtbx/programs copying mmtbx/programs/suitename.py -> build/lib/mmtbx/programs copying mmtbx/programs/probe2.py -> build/lib/mmtbx/programs copying mmtbx/programs/reduce2.py -> build/lib/mmtbx/programs copying mmtbx/programs/emringer.py -> build/lib/mmtbx/programs copying mmtbx/programs/cbetadev.py -> build/lib/mmtbx/programs copying mmtbx/programs/quantum_interface.py -> build/lib/mmtbx/programs copying mmtbx/programs/reduce_cryoem_resolution.py -> build/lib/mmtbx/programs copying mmtbx/programs/holton_geometry_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/pdbtools.py -> build/lib/mmtbx/programs copying mmtbx/programs/__init__.py -> build/lib/mmtbx/programs copying mmtbx/programs/ss_idealization.py -> build/lib/mmtbx/programs copying mmtbx/programs/process_predicted_model.py -> build/lib/mmtbx/programs copying mmtbx/programs/validate_ligands.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_puckers.py -> build/lib/mmtbx/programs copying mmtbx/programs/ligand_restraints_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/water_b_factors.py -> build/lib/mmtbx/programs copying mmtbx/programs/suitename_old.py -> build/lib/mmtbx/programs copying mmtbx/programs/next_gen_residue_typing.py -> build/lib/mmtbx/programs copying mmtbx/programs/real_space_correlation.py -> build/lib/mmtbx/programs copying mmtbx/programs/arginine_geometry.py -> build/lib/mmtbx/programs copying mmtbx/programs/model_vs_sequence.py -> build/lib/mmtbx/programs copying mmtbx/programs/undowser.py -> build/lib/mmtbx/programs copying mmtbx/programs/taam_minus_iam.py -> build/lib/mmtbx/programs copying mmtbx/programs/nonbonded_overlaps.py -> build/lib/mmtbx/programs copying mmtbx/programs/mask.py -> build/lib/mmtbx/programs copying mmtbx/programs/clashscore.py -> build/lib/mmtbx/programs copying mmtbx/programs/comparama.py -> build/lib/mmtbx/programs copying mmtbx/programs/mp_validate_bonds.py -> build/lib/mmtbx/programs copying mmtbx/programs/undowser2.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate.py -> build/lib/mmtbx/programs copying mmtbx/programs/cablam_idealization.py -> build/lib/mmtbx/programs copying mmtbx/programs/barbed_wire_analysis.py -> build/lib/mmtbx/programs copying mmtbx/programs/rama_z.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_suites.py -> build/lib/mmtbx/programs copying mmtbx/programs/fmodel.py -> build/lib/mmtbx/programs copying mmtbx/programs/omegalyze.py -> build/lib/mmtbx/programs copying mmtbx/programs/prepare_pdb_deposition.py -> build/lib/mmtbx/programs copying mmtbx/programs/pdb_as_cif.py -> build/lib/mmtbx/programs copying mmtbx/programs/ss_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/ribbons.py -> build/lib/mmtbx/programs copying mmtbx/programs/rotalyze.py -> build/lib/mmtbx/programs copying mmtbx/programs/polder.py -> build/lib/mmtbx/programs copying mmtbx/programs/atom_valence_simple.py -> build/lib/mmtbx/programs copying mmtbx/programs/elbow_services.py -> build/lib/mmtbx/programs copying mmtbx/programs/hydrogenate.py -> build/lib/mmtbx/programs copying mmtbx/programs/xtrapol8.py -> build/lib/mmtbx/programs copying mmtbx/programs/next_gen_atom_typing.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_bonds.py -> build/lib/mmtbx/programs copying mmtbx/programs/ramalyze.py -> build/lib/mmtbx/programs creating build/lib/mmtbx/building copying mmtbx/building/extend_sidechains.py -> build/lib/mmtbx/building copying mmtbx/building/__init__.py -> build/lib/mmtbx/building copying mmtbx/building/tst_extend_sidechains.py -> build/lib/mmtbx/building copying mmtbx/building/tst_extend_sidechains_2.py -> build/lib/mmtbx/building copying mmtbx/building/cablam_idealization.py -> build/lib/mmtbx/building copying mmtbx/building/merge_models.py -> build/lib/mmtbx/building copying mmtbx/building/minimize_chain.py -> build/lib/mmtbx/building copying mmtbx/building/loop_idealization.py -> build/lib/mmtbx/building creating build/lib/mmtbx/f_model copying mmtbx/f_model/__init__.py -> build/lib/mmtbx/f_model copying mmtbx/f_model/f_model.py -> build/lib/mmtbx/f_model copying mmtbx/f_model/f_model_info.py -> build/lib/mmtbx/f_model creating build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/tst_classifier_02.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/__init__.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/dump_sites.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/tst_classifier_01.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/utils.py -> build/lib/mmtbx/ions/svm creating build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/__init__.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/utils.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints creating build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/__init__.py -> build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> build/lib/mmtbx/refinement/ensemble_refinement creating build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_4.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_water.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residues.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/weight.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_5.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/__init__.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_6.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_water.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_rigid_body.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/occupancy.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_4.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_selection.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/explode_and_refine.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/adp.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_monitor.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/individual_sites.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_7.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_weight.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residue.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_small_molecule.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_his.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/rigid_body.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/utils.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_5.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_6.py -> build/lib/mmtbx/refinement/real_space creating build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/__init__.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_optimize.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_util.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_ga.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_masks.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_input.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_mtz.py -> build/lib/mmtbx/sisa/optimize creating build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_2.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_3.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/__init__.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/ss_idealization.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_1.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_io.py -> build/lib/mmtbx/secondary_structure/build creating build/lib/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/convert_from_text.py -> build/lib/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/__init__.py -> build/lib/mmtbx/validation/ramachandran creating build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/probescore_ligand.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/__init__.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/percentile_clashscore.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/mp_geo.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/percentile_mpscore.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/table_from_json.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/kinemage_templates.py -> build/lib/mmtbx/validation/molprobity creating build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_3.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_01.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/run_restraints.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_arguments.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/__init__.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_02.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze_rare.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rotalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev_02.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_model_properties.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_undowser2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_waters.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_suitename.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_do_flips_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rna_validate.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_utils.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_experimental.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_restraints.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_validate_bonds.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_endtoend.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore_2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_undowser.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_1.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_find_region_max_value.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_4.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_5.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_symmetry_SS.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_omegalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_keep_hydrogens.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_chiral_validation.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam_2.py -> build/lib/mmtbx/validation/regression creating build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_analysis.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/__init__.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_as_xyz.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_utils.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_refinement_fft.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_get_t_scheme.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> build/lib/mmtbx/regression/tls creating build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_cart_ref_restraints.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/__init__.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ramachandran.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ncs.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_utils_merge_models.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_neutralize_scatterers.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_get_vdw_radii.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_pairs_within.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_merge.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_mtrix.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_2.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_tors_ref_restraints.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_symmetry.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_dedeuterate.py -> build/lib/mmtbx/regression/model creating build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search_flips.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/__init__.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_utils.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_restraints.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search.py -> build/lib/mmtbx/regression/ncs creating build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/ccd.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/starting_conformations.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/__init__.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/utils.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/berkeley_ramalyze.py -> build/lib/mmtbx/building/loop_closure creating build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/tst_00.py -> build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/__init__.py -> build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/lifi.py -> build/lib/mmtbx/building/ligands creating build/lib/spotfinder/servers copying spotfinder/servers/spotfinder_server_client_push.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_utils.py -> build/lib/spotfinder/servers copying spotfinder/servers/multipart_encoder.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_dials.py -> build/lib/spotfinder/servers copying spotfinder/servers/__init__.py -> build/lib/spotfinder/servers copying spotfinder/servers/adsc_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/general_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_bcsb.py -> build/lib/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_read_file.py -> build/lib/spotfinder/servers copying spotfinder/servers/pilatus_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/specific_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_is_alive.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache.py -> build/lib/spotfinder/servers copying spotfinder/servers/bcsb_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/spotfinder_server_read_file.py -> build/lib/spotfinder/servers copying spotfinder/servers/thin_client.py -> build/lib/spotfinder/servers creating build/lib/spotfinder/applications copying spotfinder/applications/__init__.py -> build/lib/spotfinder/applications copying spotfinder/applications/practical_heuristics.py -> build/lib/spotfinder/applications copying spotfinder/applications/stats_distl.py -> build/lib/spotfinder/applications copying spotfinder/applications/image_viewer.py -> build/lib/spotfinder/applications copying spotfinder/applications/signal_strength.py -> build/lib/spotfinder/applications copying spotfinder/applications/wrappers.py -> build/lib/spotfinder/applications creating build/lib/spotfinder/array_family copying spotfinder/array_family/__init__.py -> build/lib/spotfinder/array_family copying spotfinder/array_family/flex.py -> build/lib/spotfinder/array_family creating build/lib/spotfinder/diffraction copying spotfinder/diffraction/__init__.py -> build/lib/spotfinder/diffraction copying spotfinder/diffraction/geometry.py -> build/lib/spotfinder/diffraction copying spotfinder/diffraction/imagefiles.py -> build/lib/spotfinder/diffraction creating build/lib/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/__init__.py -> build/lib/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/practical_heuristics.py -> build/lib/spotfinder/dxtbx_toolbox creating build/lib/spotfinder/core_toolbox copying spotfinder/core_toolbox/__init__.py -> build/lib/spotfinder/core_toolbox copying spotfinder/core_toolbox/close_spots_detail.py -> build/lib/spotfinder/core_toolbox creating build/lib/spotfinder/math_support copying spotfinder/math_support/__init__.py -> build/lib/spotfinder/math_support copying spotfinder/math_support/sphere_formulae.py -> build/lib/spotfinder/math_support creating build/lib/spotfinder/command_line copying spotfinder/command_line/find_active_area.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/sweep_strength.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/__init__.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/mp_spotfinder_server_read_file.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/image_viewer.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/signal_strength.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/thin_client.py -> build/lib/spotfinder/command_line creating build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/method2_resolution.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice_nztt.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/__init__.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/spotreporter.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice2.py -> build/lib/spotfinder/applications/heuristic_tbx creating build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/correction_vector_plot.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/__init__.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_run3.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_phil.py -> build/lib/spotfinder/applications/xfel running egg_info creating cctbx.egg-info writing cctbx.egg-info/PKG-INFO writing dependency_links to cctbx.egg-info/dependency_links.txt writing requirements to cctbx.egg-info/requires.txt writing top-level names to cctbx.egg-info/top_level.txt writing manifest file 'cctbx.egg-info/SOURCES.txt' reading manifest file 'cctbx.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'cctbx.egg-info/SOURCES.txt' installing to build/bdist.linux-ppc64le/wheel running install running install_lib creating build/bdist.linux-ppc64le/wheel creating build/bdist.linux-ppc64le/wheel/boost copying build/lib/boost/__init__.py -> build/bdist.linux-ppc64le/wheel/./boost copying build/lib/boost/tuple.py -> build/bdist.linux-ppc64le/wheel/./boost copying build/lib/boost/optional.py -> build/bdist.linux-ppc64le/wheel/./boost copying build/lib/boost/std_pair.py -> build/bdist.linux-ppc64le/wheel/./boost copying build/lib/boost/rational.py -> build/bdist.linux-ppc64le/wheel/./boost copying build/lib/boost/python.py -> build/bdist.linux-ppc64le/wheel/./boost creating build/bdist.linux-ppc64le/wheel/qttbx copying build/lib/qttbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./qttbx creating build/bdist.linux-ppc64le/wheel/qttbx/examples copying build/lib/qttbx/examples/phil_widgets_example.py -> build/bdist.linux-ppc64le/wheel/./qttbx/examples copying build/lib/qttbx/examples/_helpers.py -> build/bdist.linux-ppc64le/wheel/./qttbx/examples copying build/lib/qttbx/examples/__init__.py -> build/bdist.linux-ppc64le/wheel/./qttbx/examples copying build/lib/qttbx/examples/data_manager_example.py -> build/bdist.linux-ppc64le/wheel/./qttbx/examples copying build/lib/qttbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./qttbx copying build/lib/qttbx/qt.py -> build/bdist.linux-ppc64le/wheel/./qttbx copying build/lib/qttbx/phil.py -> build/bdist.linux-ppc64le/wheel/./qttbx creating build/bdist.linux-ppc64le/wheel/qttbx/viewers copying build/lib/qttbx/viewers/chimerax.py -> build/bdist.linux-ppc64le/wheel/./qttbx/viewers copying build/lib/qttbx/viewers/__init__.py -> build/bdist.linux-ppc64le/wheel/./qttbx/viewers creating build/bdist.linux-ppc64le/wheel/qttbx/widgets copying build/lib/qttbx/widgets/__init__.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets copying build/lib/qttbx/widgets/font_init.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets creating build/bdist.linux-ppc64le/wheel/qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/qstr_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/atom_selection.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/float_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/multiple.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/__init__.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/text_base.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/ints_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/floats_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/_colors.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/str_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/strings_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/bool_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/unit_cell.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/words_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/int_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/key_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/delegate.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/choice_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/path_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/space_group.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/phil creating build/bdist.linux-ppc64le/wheel/qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_delegate.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/__init__.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_binding_popup.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_table_model.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_phil_helpers.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/data_manager creating build/bdist.linux-ppc64le/wheel/qttbx/widgets/chat creating build/bdist.linux-ppc64le/wheel/qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/session.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/profile.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/subagent.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/conversation.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/storage.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/__init__.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/runner.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/paths.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/tools.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/skills.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/base.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/mcp_client.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/events.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/approval.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/errors.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/edge_rail.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/message_bubble.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/overlay_anchor.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_view.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/__init__.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/artifact.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/tool_approval.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/logging_setup.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/credentials_dialog.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/artifact_panel.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/search_bar.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/message_input.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/tool_call_disclosure.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_search.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/markdown_export.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/image_cache.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/auto_height.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/chat_top_bar.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/eliding.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/diagnostics.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/image_lightbox.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/question_card.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/markdown_view.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_list.py -> build/bdist.linux-ppc64le/wheel/./qttbx/widgets/chat creating build/bdist.linux-ppc64le/wheel/qttbx/regression copying build/lib/qttbx/regression/tst_chat_storage.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_logging_setup.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_image.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_diagnostics.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_subagent_view.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/__init__.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_runner.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_skills.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_overlay_anchor.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_mcp_client.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_agent_core.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_approval_coordinator.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_data_manager_widget.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_credentials_dialog.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_auto_height.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_search.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_markdown.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_profile.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_tools.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_eliding.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_message_input.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_session.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_message_bubble.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_run_tests_manifest.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_subagent.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_tool_approval.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_storage_session.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_window_chrome.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_phil_widgets.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_conversation_widgets.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_question_card.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_artifact_panel.py -> build/bdist.linux-ppc64le/wheel/./qttbx/regression creating build/bdist.linux-ppc64le/wheel/gltbx copying build/lib/gltbx/wx_motion_on_tab.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/fonts.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/viewer_utils.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/wx_viewer_leapmotion.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/tst_ellipsoids.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/wx_viewers_images.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/quadrics.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/tst_viewer_utils.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/images.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/gl.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/gl_managed.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/generate_defines_bpl.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/wx_viewer.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/generate_fonts_ucs_cpp.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/wx_viewer_example.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/tst.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/wx_ellipsoids_test.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/libtbx_refresh.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/util.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/glu.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/extract_opengl_specs.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/wx_scene.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/generate_functions_bpl.py -> build/bdist.linux-ppc64le/wheel/./gltbx copying build/lib/gltbx/tst_fonts.py -> build/bdist.linux-ppc64le/wheel/./gltbx creating build/bdist.linux-ppc64le/wheel/gltbx/command_line copying build/lib/gltbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./gltbx/command_line copying build/lib/gltbx/command_line/try_imports.py -> build/bdist.linux-ppc64le/wheel/./gltbx/command_line copying build/lib/gltbx/wx_cube.py -> build/bdist.linux-ppc64le/wheel/./gltbx creating build/bdist.linux-ppc64le/wheel/rstbx creating build/bdist.linux-ppc64le/wheel/rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/change_basis.py -> build/bdist.linux-ppc64le/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/tst_sublattice.py -> build/bdist.linux-ppc64le/wheel/./rstbx/sublattice_support creating build/bdist.linux-ppc64le/wheel/rstbx/dials_core copying build/lib/rstbx/dials_core/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/dials_core copying build/lib/rstbx/dials_core/integration_core.py -> build/bdist.linux-ppc64le/wheel/./rstbx/dials_core creating build/bdist.linux-ppc64le/wheel/rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/fit_distribution.py -> build/bdist.linux-ppc64le/wheel/./rstbx/outlier_spots copying build/lib/rstbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx creating build/bdist.linux-ppc64le/wheel/rstbx/indexing_api copying build/lib/rstbx/indexing_api/test_dps.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/nearest_neighbor.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/force_cell.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/lattice.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/sampling.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/basis_choice.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/tools.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_detection.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_procedure.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing_api creating build/bdist.linux-ppc64le/wheel/rstbx/dps_core copying build/lib/rstbx/dps_core/constrainment.py -> build/bdist.linux-ppc64le/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/lepage.py -> build/bdist.linux-ppc64le/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/tst_iotbx_converter.py -> build/bdist.linux-ppc64le/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/cell_assessment.py -> build/bdist.linux-ppc64le/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/sampling.py -> build/bdist.linux-ppc64le/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/basis_choice.py -> build/bdist.linux-ppc64le/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/zuoreduction.py -> build/bdist.linux-ppc64le/wheel/./rstbx/dps_core creating build/bdist.linux-ppc64le/wheel/rstbx/array_family copying build/lib/rstbx/array_family/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/array_family copying build/lib/rstbx/array_family/flex.py -> build/bdist.linux-ppc64le/wheel/./rstbx/array_family creating build/bdist.linux-ppc64le/wheel/rstbx/apps copying build/lib/rstbx/apps/slip_helpers.py -> build/bdist.linux-ppc64le/wheel/./rstbx/apps copying build/lib/rstbx/apps/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/apps creating build/bdist.linux-ppc64le/wheel/rstbx/apps/stills copying build/lib/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> build/bdist.linux-ppc64le/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/dials_refinement_preceding_integration.py -> build/bdist.linux-ppc64le/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/util.py -> build/bdist.linux-ppc64le/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/simple_integration.py -> build/bdist.linux-ppc64le/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/stills_integration.py -> build/bdist.linux-ppc64le/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/spot_markup.py -> build/bdist.linux-ppc64le/wheel/./rstbx/apps copying build/lib/rstbx/apps/dual_resolution_helpers.py -> build/bdist.linux-ppc64le/wheel/./rstbx/apps creating build/bdist.linux-ppc64le/wheel/rstbx/simage copying build/lib/rstbx/simage/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simage copying build/lib/rstbx/simage/run_labelit_index.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simage copying build/lib/rstbx/simage/create.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simage copying build/lib/rstbx/simage/tst.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simage copying build/lib/rstbx/simage/wx_display.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simage copying build/lib/rstbx/simage/explore_completeness.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simage copying build/lib/rstbx/simage/refine_uc_cr.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simage copying build/lib/rstbx/simage/solver.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simage copying build/lib/rstbx/simage/integrate_crude.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simage copying build/lib/rstbx/simage/run_spotfinder.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simage creating build/bdist.linux-ppc64le/wheel/rstbx/diffraction copying build/lib/rstbx/diffraction/tst_predict.py -> build/bdist.linux-ppc64le/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_ewald_sphere.py -> build/bdist.linux-ppc64le/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/diffraction creating build/bdist.linux-ppc64le/wheel/rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_utils_clustering.py -> build/bdist.linux-ppc64le/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> build/bdist.linux-ppc64le/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/tst_partial_derivatives.py -> build/bdist.linux-ppc64le/wheel/./rstbx/diffraction copying build/lib/rstbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./rstbx creating build/bdist.linux-ppc64le/wheel/rstbx/simulation copying build/lib/rstbx/simulation/sim_pdf.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/tst_xfel1_simple.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/constants.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/sim_utils.py -> build/bdist.linux-ppc64le/wheel/./rstbx/simulation creating build/bdist.linux-ppc64le/wheel/rstbx/symmetry copying build/lib/rstbx/symmetry/subgroup.py -> build/bdist.linux-ppc64le/wheel/./rstbx/symmetry copying build/lib/rstbx/symmetry/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/symmetry creating build/bdist.linux-ppc64le/wheel/rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/g_gradients.py -> build/bdist.linux-ppc64le/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/parameter_reduction.py -> build/bdist.linux-ppc64le/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/sgtbx_adaptor.py -> build/bdist.linux-ppc64le/wheel/./rstbx/symmetry creating build/bdist.linux-ppc64le/wheel/rstbx/indexing copying build/lib/rstbx/indexing/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/do_index.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/tst_auto_monoscan.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/tst_dataset1.py -> build/bdist.linux-ppc64le/wheel/./rstbx/indexing creating build/bdist.linux-ppc64le/wheel/rstbx/phil copying build/lib/rstbx/phil/phil_preferences.py -> build/bdist.linux-ppc64le/wheel/./rstbx/phil copying build/lib/rstbx/phil/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/phil copying build/lib/rstbx/phil/preferences.py -> build/bdist.linux-ppc64le/wheel/./rstbx/phil copying build/lib/rstbx/phil/scope.py -> build/bdist.linux-ppc64le/wheel/./rstbx/phil creating build/bdist.linux-ppc64le/wheel/rstbx/detectors copying build/lib/rstbx/detectors/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/detectors copying build/lib/rstbx/detectors/silicon.py -> build/bdist.linux-ppc64le/wheel/./rstbx/detectors creating build/bdist.linux-ppc64le/wheel/rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_validate.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/ersatz_misset.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions_idx.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/compare_mosflm_xds.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2a.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx creating build/bdist.linux-ppc64le/wheel/rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/tst_detector_model.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/detector.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/instrument_specifics.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bpcx/detector_model creating build/bdist.linux-ppc64le/wheel/rstbx/new_horizons copying build/lib/rstbx/new_horizons/pixel_spread.py -> build/bdist.linux-ppc64le/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/spot_shape.py -> build/bdist.linux-ppc64le/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/index.py -> build/bdist.linux-ppc64le/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/oscillation_shots.py -> build/bdist.linux-ppc64le/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/stats_index.py -> build/bdist.linux-ppc64le/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/speckfinder.py -> build/bdist.linux-ppc64le/wheel/./rstbx/new_horizons creating build/bdist.linux-ppc64le/wheel/rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_converter.py -> build/bdist.linux-ppc64le/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_helpers.py -> build/bdist.linux-ppc64le/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/tst_coordinate_frame_converter.py -> build/bdist.linux-ppc64le/wheel/./rstbx/cftbx creating build/bdist.linux-ppc64le/wheel/rstbx/viewer copying build/lib/rstbx/viewer/integration.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/pixels3d.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/processing.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/dataset.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/drivers.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/results_base.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/tst.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/controls.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_frame.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_wrap.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration_frame.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/indexing.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/display.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/frame.py -> build/bdist.linux-ppc64le/wheel/./rstbx/viewer creating build/bdist.linux-ppc64le/wheel/rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/ring_frame.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/example_frame_plugin_hidden.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/pyslip.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_viewer_image_factory.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/score_frame.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/uc_frame.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/calibration_frame.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_display.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/frame.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/tile_generation.py -> build/bdist.linux-ppc64le/wheel/./rstbx/slip_viewer copying build/lib/rstbx/utils.py -> build/bdist.linux-ppc64le/wheel/./rstbx creating build/bdist.linux-ppc64le/wheel/rstbx/command_line copying build/lib/rstbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.solver.py -> build/bdist.linux-ppc64le/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.create.py -> build/bdist.linux-ppc64le/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/index.py -> build/bdist.linux-ppc64le/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/example_viewer.py -> build/bdist.linux-ppc64le/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/viewer.py -> build/bdist.linux-ppc64le/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.explore_completeness.py -> build/bdist.linux-ppc64le/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.wx_display.py -> build/bdist.linux-ppc64le/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/slip_viewer.py -> build/bdist.linux-ppc64le/wheel/./rstbx/command_line creating build/bdist.linux-ppc64le/wheel/rstbx/bandpass copying build/lib/rstbx/bandpass/__init__.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bandpass copying build/lib/rstbx/bandpass/simulated_annealing.py -> build/bdist.linux-ppc64le/wheel/./rstbx/bandpass creating build/bdist.linux-ppc64le/wheel/simtbx creating build/bdist.linux-ppc64le/wheel/simtbx/gpu copying build/lib/simtbx/gpu/tst_gpu_multisource_background.py -> build/bdist.linux-ppc64le/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/__init__.py -> build/bdist.linux-ppc64le/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_shoeboxes.py -> build/bdist.linux-ppc64le/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_exafel_api.py -> build/bdist.linux-ppc64le/wheel/./simtbx/gpu creating build/bdist.linux-ppc64le/wheel/simtbx/diffBragg copying build/lib/simtbx/diffBragg/parameter_errors.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/mpi_logger.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/__init__.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/ensemble_refine_launcher.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_utils.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/attr_list.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_ensemble_utils.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/stage_two_utils.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_io.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/phil.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg creating build/bdist.linux-ppc64le/wheel/simtbx/diffBragg/refiners creating build/bdist.linux-ppc64le/wheel/simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/__init__.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/manager.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/__init__.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/base_refiner.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/geometry.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/stage_two_refiner.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/parameters.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/prep_stage2_input.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/device.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/utils.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/psf.py -> build/bdist.linux-ppc64le/wheel/./simtbx/diffBragg creating build/bdist.linux-ppc64le/wheel/simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_multisource_background.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/anisotropic_mosaicity.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_frames.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/sim_data.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gauss_argchk.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/__init__.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_input.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_basic.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_minimal.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_beam.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_threads.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_crystal.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_init.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/utils.py -> build/bdist.linux-ppc64le/wheel/./simtbx/nanoBragg creating build/bdist.linux-ppc64le/wheel/simtbx/modeling copying build/lib/simtbx/modeling/FormatHDF5AttributeGeometry.py -> build/bdist.linux-ppc64le/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/__init__.py -> build/bdist.linux-ppc64le/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/predictions.py -> build/bdist.linux-ppc64le/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/forward_models.py -> build/bdist.linux-ppc64le/wheel/./simtbx/modeling copying build/lib/simtbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./simtbx creating build/bdist.linux-ppc64le/wheel/simtbx/pixel copying build/lib/simtbx/pixel/__init__.py -> build/bdist.linux-ppc64le/wheel/./simtbx/pixel copying build/lib/simtbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./simtbx creating build/bdist.linux-ppc64le/wheel/simtbx/kokkos copying build/lib/simtbx/kokkos/__init__.py -> build/bdist.linux-ppc64le/wheel/./simtbx/kokkos copying build/lib/simtbx/kokkos/tst_kokkos_lib.py -> build/bdist.linux-ppc64le/wheel/./simtbx/kokkos creating build/bdist.linux-ppc64le/wheel/cbflib_adaptbx copying build/lib/cbflib_adaptbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/exercise_compression.py -> build/bdist.linux-ppc64le/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/copy_files.py -> build/bdist.linux-ppc64le/wheel/./cbflib_adaptbx creating build/bdist.linux-ppc64le/wheel/cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/dump.py -> build/bdist.linux-ppc64le/wheel/./cbflib_adaptbx/command_line creating build/bdist.linux-ppc64le/wheel/fast_linalg copying build/lib/fast_linalg/__init__.py -> build/bdist.linux-ppc64le/wheel/./fast_linalg creating build/bdist.linux-ppc64le/wheel/wxtbx copying build/lib/wxtbx/custom_restraints.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/monitor.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/qstat_view.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/browser.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/layout.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/checklistctrl.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/listeditor.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/ensemble_validation.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/sequence_view.py -> build/bdist.linux-ppc64le/wheel/./wxtbx creating build/bdist.linux-ppc64le/wheel/wxtbx/plots copying build/lib/wxtbx/plots/emringer.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/__init__.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/molprobity.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/plots copying build/lib/wxtbx/segmentedctrl.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/anomalous_scattering.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/adp_statistics.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/app.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/bitmaps.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/windows.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/b_plot.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/misc_dialogs.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/info_panels.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/polygon.py -> build/bdist.linux-ppc64le/wheel/./wxtbx creating build/bdist.linux-ppc64le/wheel/wxtbx/reports copying build/lib/wxtbx/reports/__init__.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/blast.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/pdb_symmetry.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/reports copying build/lib/wxtbx/symmetry_dialog.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/icons.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/tables.py -> build/bdist.linux-ppc64le/wheel/./wxtbx creating build/bdist.linux-ppc64le/wheel/wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floats.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/__init__.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/text_base.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/misc_ctrls.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floatctrl.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tribool.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/symop.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/intctrl.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice_multi.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/path.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/array_label.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/simple_dialogs.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/boolctrl.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/unit_cell.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/numbers.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/ints.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strctrl.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strings.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tree.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/space_group.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/heavy_atoms.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/polygon_db_viewer.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/metallicbutton.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/xtriage.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/mtz_dump.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/utils.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/pdb_editor.py -> build/bdist.linux-ppc64le/wheel/./wxtbx creating build/bdist.linux-ppc64le/wheel/wxtbx/regression copying build/lib/wxtbx/regression/__init__.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_headless_construct.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_process_control.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_imports.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/_warnings.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/_headless_construct_cases.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/regression copying build/lib/wxtbx/errors.py -> build/bdist.linux-ppc64le/wheel/./wxtbx copying build/lib/wxtbx/process_control.py -> build/bdist.linux-ppc64le/wheel/./wxtbx creating build/bdist.linux-ppc64le/wheel/wxtbx/command_line copying build/lib/wxtbx/command_line/inspect_r_free_flags.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/anomalous_differences_histogram.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/plot_anomalous_scattering.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/show_file_info.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/b_plot.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_statistics.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/wxpython.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/loggraph.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/xtriage.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_editor.py -> build/bdist.linux-ppc64le/wheel/./wxtbx/command_line copying build/lib/wxtbx/path_dialogs.py -> build/bdist.linux-ppc64le/wheel/./wxtbx creating build/bdist.linux-ppc64le/wheel/smtbx creating build/bdist.linux-ppc64le/wheel/smtbx/masks copying build/lib/smtbx/masks/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/masks creating build/bdist.linux-ppc64le/wheel/smtbx/stl copying build/lib/smtbx/stl/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/stl copying build/lib/smtbx/stl/map.py -> build/bdist.linux-ppc64le/wheel/./smtbx/stl creating build/bdist.linux-ppc64le/wheel/smtbx/structure_factors copying build/lib/smtbx/structure_factors/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/structure_factors creating build/bdist.linux-ppc64le/wheel/smtbx/structure_factors/direct copying build/lib/smtbx/structure_factors/direct/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/structure_factors/direct copying build/lib/smtbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx creating build/bdist.linux-ppc64le/wheel/smtbx/absolute_structure copying build/lib/smtbx/absolute_structure/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/absolute_structure creating build/bdist.linux-ppc64le/wheel/smtbx/source_generators copying build/lib/smtbx/source_generators/flex_fwd_h.py -> build/bdist.linux-ppc64le/wheel/./smtbx/source_generators copying build/lib/smtbx/source_generators/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/source_generators creating build/bdist.linux-ppc64le/wheel/smtbx/array_family copying build/lib/smtbx/array_family/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/array_family copying build/lib/smtbx/libtbx_refresh.py -> build/bdist.linux-ppc64le/wheel/./smtbx copying build/lib/smtbx/development.py -> build/bdist.linux-ppc64le/wheel/./smtbx copying build/lib/smtbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./smtbx creating build/bdist.linux-ppc64le/wheel/smtbx/refinement copying build/lib/smtbx/refinement/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/least_squares.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement creating build/bdist.linux-ppc64le/wheel/smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/fpfdp.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/rigid.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/occupancy.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/site.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/adp.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints creating build/bdist.linux-ppc64le/wheel/smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_disorder.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_rigid.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_lbfgs.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_reparametrisation.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_constrained_structure.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_direction.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_occupancies.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_same_group.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/tests creating build/bdist.linux-ppc64le/wheel/smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/hydrogens.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/all.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/all.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/constraints creating build/bdist.linux-ppc64le/wheel/smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/origin_fixing_restraints.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/adp_restraints.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/weighting_schemes.py -> build/bdist.linux-ppc64le/wheel/./smtbx/refinement copying build/lib/smtbx/utils.py -> build/bdist.linux-ppc64le/wheel/./smtbx creating build/bdist.linux-ppc64le/wheel/smtbx/regression creating build/bdist.linux-ppc64le/wheel/smtbx/regression/test_data copying build/lib/smtbx/regression/test_data/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/regression/test_data copying build/lib/smtbx/regression/tst_commandline_refine.py -> build/bdist.linux-ppc64le/wheel/./smtbx/regression copying build/lib/smtbx/regression/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/regression copying build/lib/smtbx/regression/tst_commandline_anomrefine.py -> build/bdist.linux-ppc64le/wheel/./smtbx/regression creating build/bdist.linux-ppc64le/wheel/smtbx/ab_initio copying build/lib/smtbx/ab_initio/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/ab_initio copying build/lib/smtbx/ab_initio/charge_flipping.py -> build/bdist.linux-ppc64le/wheel/./smtbx/ab_initio creating build/bdist.linux-ppc64le/wheel/smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_charge_flipping.py -> build/bdist.linux-ppc64le/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_ab_initio_ext.py -> build/bdist.linux-ppc64le/wheel/./smtbx/ab_initio/tests creating build/bdist.linux-ppc64le/wheel/smtbx/command_line copying build/lib/smtbx/command_line/refine.py -> build/bdist.linux-ppc64le/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/anom_refine.py -> build/bdist.linux-ppc64le/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/benchmark_refinement.py -> build/bdist.linux-ppc64le/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/absolute_structure.py -> build/bdist.linux-ppc64le/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/masks.py -> build/bdist.linux-ppc64le/wheel/./smtbx/command_line creating build/bdist.linux-ppc64le/wheel/iotbx copying build/lib/iotbx/reflection_file_utils.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/xds copying build/lib/iotbx/xds/xparm.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/gain_cbf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/spot_xds.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/xds_cbf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/geometry.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/crystal_symmetry_from_hkl.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/integrate_hkl.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/blank_cbf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/read_ascii.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/xds_inp.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/xds/correction.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xds copying build/lib/iotbx/reflection_file_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/csv_utils.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/pdb copying build/lib/iotbx/pdb/xray_structure.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_selection.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/fetch.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_tls.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/experiment_type.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdb_v3_cif_conversion.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection_string.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/records.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rna_dna_detection.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_input_pickling.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_2_interpretation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/aa_utils.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/extract_rfactors_resolutions_sigma.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hybrid_36.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_read_mtrix_records_from_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy_2.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_pdb.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/cryst1_interpretation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/download.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_3_interpretation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/crystal_symmetry_from_pdb.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/secondary_structure.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hierarchy.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_utils.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_name_interpretation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_name_interpretation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/mmcif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_atom_sort.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/nucleic_acid_codes.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_ext.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_290_interpretation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb creating build/bdist.linux-ppc64le/wheel/iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/tst_remediator.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/remediator.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/tst_rna_dna_atom_names.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_aa_names.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/web_service_api.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/misc_records_output.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure_2.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdbe.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/utils.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_rna_dna_names.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/amino_acid_codes.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rcsb.py -> build/bdist.linux-ppc64le/wheel/./iotbx/pdb creating build/bdist.linux-ppc64le/wheel/iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-ppc64le/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/tst.py -> build/bdist.linux-ppc64le/wheel/./iotbx/ccp4_map creating build/bdist.linux-ppc64le/wheel/iotbx/solve copying build/lib/iotbx/solve/fpfm_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/solve copying build/lib/iotbx/solve/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/solve copying build/lib/iotbx/solve/crystal_symmetry_from_inp.py -> build/bdist.linux-ppc64le/wheel/./iotbx/solve copying build/lib/iotbx/format.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/builders.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/pymol.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/extract_xtal_data.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/phases.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/poscar.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/symmetry.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/examples copying build/lib/iotbx/examples/pdb_tardy_conf_sampling_simple.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdbx_mmcif_tutorial.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/tst_mtz_free_flipper.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/prepare_model_for_rsr.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_split_chains.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/libtbx_phil_examples.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_symmetry_copies.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_shake.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/recalculate_phenix_refine_r_factors.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples creating build/bdist.linux-ppc64le/wheel/iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/tst.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v2_simple.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v3_better.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_hierarchy.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/direct_methods_light.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_to_map_simple.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_free_flipper.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_convert_free_to_work.py -> build/bdist.linux-ppc64le/wheel/./iotbx/examples copying build/lib/iotbx/reflection_file_converter.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/crystal_symmetry_from_any.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/wildcard.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/ncs copying build/lib/iotbx/ncs/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/ncs creating build/bdist.linux-ppc64le/wheel/iotbx/scalepack copying build/lib/iotbx/scalepack/tst_no_merge_original_index.py -> build/bdist.linux-ppc64le/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/merge.py -> build/bdist.linux-ppc64le/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/no_merge_original_index.py -> build/bdist.linux-ppc64le/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/tst_merge.py -> build/bdist.linux-ppc64le/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/space_group_dictionary.py -> build/bdist.linux-ppc64le/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/crystal_symmetry_from_hkl.py -> build/bdist.linux-ppc64le/wheel/./iotbx/scalepack copying build/lib/iotbx/option_parser.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/builders_depending_on_smtbx.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/kriber copying build/lib/iotbx/kriber/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/strudat.py -> build/bdist.linux-ppc64le/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/tst_strudat.py -> build/bdist.linux-ppc64le/wheel/./iotbx/kriber creating build/bdist.linux-ppc64le/wheel/iotbx/shelx copying build/lib/iotbx/shelx/tst_lex_parse_build.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_writer.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fcf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/hklf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/write_ins.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_fvar_encoding.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_hklf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tokens.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/crystal_symmetry_from_ins.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fvar_encoding.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/lexer.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/parsers.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/writer.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/errors.py -> build/bdist.linux-ppc64le/wheel/./iotbx/shelx copying build/lib/iotbx/map_model_manager.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/libtbx_refresh.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/map_manager.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/cli_parser.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/table_one.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/dsn6 copying build/lib/iotbx/dsn6/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/dsn6 copying build/lib/iotbx/dsn6/tst.py -> build/bdist.linux-ppc64le/wheel/./iotbx/dsn6 creating build/bdist.linux-ppc64le/wheel/iotbx/xplor copying build/lib/iotbx/xplor/ext.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/tst_xplormap.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/crystal_symmetry_from_map.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/map.py -> build/bdist.linux-ppc64le/wheel/./iotbx/xplor creating build/bdist.linux-ppc64le/wheel/iotbx/cns copying build/lib/iotbx/cns/space_group_symbols.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/xray_structure.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/tst_cns.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_utils.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_inp.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_sdb.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_writer.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/miller_array.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/index_fobs_sigma_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/reflection_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/cns/pdb_remarks.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cns copying build/lib/iotbx/merging_statistics.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/tables.py -> build/bdist.linux-ppc64le/wheel/./iotbx/PrettyPrint copying build/lib/iotbx/simple_parser.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/dtrek copying build/lib/iotbx/dtrek/dtrek_symmetry_dict.py -> build/bdist.linux-ppc64le/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/crystal_symmetry_from_ref.py -> build/bdist.linux-ppc64le/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/reflnlist_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/dtrek creating build/bdist.linux-ppc64le/wheel/iotbx/cif copying build/lib/iotbx/cif/restraint_file_merge.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif copying build/lib/iotbx/cif/builders.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif copying build/lib/iotbx/cif/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif copying build/lib/iotbx/cif/cod_tools.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif copying build/lib/iotbx/cif/geometry.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif copying build/lib/iotbx/cif/citations.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraints.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif copying build/lib/iotbx/cif/crystal_symmetry_from_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif copying build/lib/iotbx/cif/validation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif copying build/lib/iotbx/cif/model.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif copying build/lib/iotbx/cif/errors.py -> build/bdist.linux-ppc64le/wheel/./iotbx/cif creating build/bdist.linux-ppc64le/wheel/iotbx/detectors copying build/lib/iotbx/detectors/eiger_minicbf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_mar.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cspad_detector_formats.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/dtrek.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/marIP.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/generic_detector.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/npy.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_minicbf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/saturn.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors creating build/bdist.linux-ppc64le/wheel/iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation_max_iv_trial.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/config_detector.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/camera_convention.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/spot_xy_convention.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/raxis_nonsquare.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/detectorbase.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_py_cbf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/bruker.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/mar.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors creating build/bdist.linux-ppc64le/wheel/iotbx/detectors/util copying build/lib/iotbx/detectors/util/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/util/filters.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/test_raxis2.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc_minicbf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_debug_write.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_cbf_comp_read_meth.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/active_area_filter.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_adsc.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cbf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/noir.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_detectors.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxis.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/edf.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/image_from_http_request.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc_module.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/url_support.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxisbase.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/macscience.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/beam_center_convention.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_slice.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/hamamatsu.py -> build/bdist.linux-ppc64le/wheel/./iotbx/detectors copying build/lib/iotbx/cif_mtz_data_labels.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/fullprof copying build/lib/iotbx/fullprof/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/write_pcr.py -> build/bdist.linux-ppc64le/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/read_pcr.py -> build/bdist.linux-ppc64le/wheel/./iotbx/fullprof copying build/lib/iotbx/phil.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/mrcfile copying build/lib/iotbx/mrcfile/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mrcfile copying build/lib/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mrcfile creating build/bdist.linux-ppc64le/wheel/iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/alignment_as_hsearch.py -> build/bdist.linux-ppc64le/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ncbi_blast_xml.py -> build/bdist.linux-ppc64le/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pdb_info.py -> build/bdist.linux-ppc64le/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ebi_wu_blast_xml.py -> build/bdist.linux-ppc64le/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/structure.py -> build/bdist.linux-ppc64le/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pubmed.py -> build/bdist.linux-ppc64le/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/xmlbuild.py -> build/bdist.linux-ppc64le/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/local_blast.py -> build/bdist.linux-ppc64le/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/homologues.py -> build/bdist.linux-ppc64le/wheel/./iotbx/bioinformatics copying build/lib/iotbx/ranges.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/mtz copying build/lib/iotbx/mtz/tst_dano.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/extract_from_symmetry_lib.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/crystal_symmetry_from_mtz.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_miller_dict.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_extract_from_symmetry_lib.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_ext.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_unmerged.py -> build/bdist.linux-ppc64le/wheel/./iotbx/mtz copying build/lib/iotbx/mtrix_biomt.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/map_tools.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/reflection_file_editor.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/gui_tools copying build/lib/iotbx/gui_tools/reflections.py -> build/bdist.linux-ppc64le/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/import_data_and_flags.py -> build/bdist.linux-ppc64le/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/cif_conversions.py -> build/bdist.linux-ppc64le/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/tst.py -> build/bdist.linux-ppc64le/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/models.py -> build/bdist.linux-ppc64le/wheel/./iotbx/gui_tools creating build/bdist.linux-ppc64le/wheel/iotbx/data_manager copying build/lib/iotbx/data_manager/yaml.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/real_map.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/json.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/ncs_spec.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/map_coefficients.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/sequence.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/miller_array.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/phil.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/common.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/model.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/restraint.py -> build/bdist.linux-ppc64le/wheel/./iotbx/data_manager creating build/bdist.linux-ppc64le/wheel/iotbx/file_io copying build/lib/iotbx/file_io/text_detection.py -> build/bdist.linux-ppc64le/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/_maps.py -> build/bdist.linux-ppc64le/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/detection.py -> build/bdist.linux-ppc64le/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/file_io creating build/bdist.linux-ppc64le/wheel/iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_multimodel.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_lattice_symmetry.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_xray_scale.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_simple_map_coefficients.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_file_io.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_generate_n_char_string.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_pdb_v3.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_tools.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_extract_xtal_data.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_2.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_statistics.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_fetch.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_plots.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_cells.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_data_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_text_detection.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_3.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdbx_mmcif_tutorial.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_1.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_inputs.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_simple_parser.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_miller_sort_asu.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phases.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_sort_atoms.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_symmetry.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_3.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_editor.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_patterson.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_1.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_show_systematic_absences.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mrc_io.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cli_parser.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_box_around_molecule.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_to_from_hierarchy.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_atom_selections_10k.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression creating build/bdist.linux-ppc64le/wheel/iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_input.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_without_validation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_user_selections.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_reordered_chains.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_ligs.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/tst_map_model_manager_local_resolution_10.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_add_conformations.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_id_str.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_4.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_file_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_utils.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_poscar.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mtz_as_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phil.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_altlocs.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_export_scalepack_unmerged.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_as_pdb_1atom.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_call_consistency.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_wrapping.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_4.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_link_records.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_input.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_group_rounding.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_manager.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_copy_select.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_2.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_occupancies_rounding.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_fasta.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_csv_utils.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_2.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_restraints_merge.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_selected_hierarchy_flip.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_models.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_crystal_symmetry_from_any.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_merging_statistics.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reindex.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_examples.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_wildcard.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/utils.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_bioinformatics.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_all_chain_ids.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_segids.py -> build/bdist.linux-ppc64le/wheel/./iotbx/regression copying build/lib/iotbx/logfiles.py -> build/bdist.linux-ppc64le/wheel/./iotbx copying build/lib/iotbx/file_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/command_line copying build/lib/iotbx/command_line/detector_image_as_png.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/get_pubmed_citation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/patterson_map.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dano_as_amplitudes.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_as_cns.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/build_phil_cache.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_cif_conversion.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.print_sequence.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns_as_mtz.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_add_conformations.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/poscar_as_xray_structure.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/csv_as_mtz.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.box_around_molecule.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.sdb_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.transfer_crystal_symmetry.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_miller_arrays.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.validate.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/explore_metric_symmetry.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_diff.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/emma.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_show_connectivity.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.dump_as_python.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_systematic_absences.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/biomt_reconstruction.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_converter.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reindex.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_completion_simple.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/sort_atoms.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/crystal_symmetry_from_any.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_xray_structure.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/blast_pdb.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/effective_resolution.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/french_wilson.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/symmetry_search.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.reflection_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/lattice_symmetry.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif_as_pdb.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/xplor.map.show_summary.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.hierarchy.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_remediator.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/merging_statistics.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/unique_with_biomt.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_get_citation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_accumulation.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_fasta.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.insert_scale_records.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_centers_of_mass.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_distances.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.as_xray_structure.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/distance_least_squares.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_comparison.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/phil.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dtrek.to_cns.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_atoms_by_name.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/simple_map_coefficients.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.join_fragment_files.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz.dump.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_split_models.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtrix_reconstruction.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz_as_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/export_scalepack_unmerged.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_editor.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/split_data_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cbf_read.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/flip_symmetric_amino_acids.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_xray_structure.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/file_reader.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_statistics.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.b_factor_stats.py -> build/bdist.linux-ppc64le/wheel/./iotbx/command_line copying build/lib/iotbx/data_plots.py -> build/bdist.linux-ppc64le/wheel/./iotbx creating build/bdist.linux-ppc64le/wheel/iotbx/programs copying build/lib/iotbx/programs/__init__.py -> build/bdist.linux-ppc64le/wheel/./iotbx/programs copying build/lib/iotbx/programs/unique_with_biomt.py -> build/bdist.linux-ppc64le/wheel/./iotbx/programs copying build/lib/iotbx/programs/box_around_molecule.py -> build/bdist.linux-ppc64le/wheel/./iotbx/programs copying build/lib/iotbx/programs/split_data_cif.py -> build/bdist.linux-ppc64le/wheel/./iotbx/programs creating build/bdist.linux-ppc64le/wheel/annlib_adaptbx copying build/lib/annlib_adaptbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./annlib_adaptbx creating build/bdist.linux-ppc64le/wheel/annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/self_match.py -> build/bdist.linux-ppc64le/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/sample.py -> build/bdist.linux-ppc64le/wheel/./annlib_adaptbx/annlib_adaptbx creating build/bdist.linux-ppc64le/wheel/annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/__init__.py -> build/bdist.linux-ppc64le/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/generate_all.py -> build/bdist.linux-ppc64le/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./annlib_adaptbx creating build/bdist.linux-ppc64le/wheel/omptbx copying build/lib/omptbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./omptbx copying build/lib/omptbx/tst.py -> build/bdist.linux-ppc64le/wheel/./omptbx creating build/bdist.linux-ppc64le/wheel/fable copying build/lib/fable/tst_read.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/tst_cout.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/tokenization.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/simple_compilation.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/tst_equivalence.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/__init__.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/intrinsics.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/cout.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/read.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/run_tests.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/equivalence.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/tst_ext.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/tst_cout_compile.py -> build/bdist.linux-ppc64le/wheel/./fable copying build/lib/fable/utils.py -> build/bdist.linux-ppc64le/wheel/./fable creating build/bdist.linux-ppc64le/wheel/fable/command_line copying build/lib/fable/command_line/show_calls.py -> build/bdist.linux-ppc64le/wheel/./fable/command_line copying build/lib/fable/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./fable/command_line copying build/lib/fable/command_line/split.py -> build/bdist.linux-ppc64le/wheel/./fable/command_line copying build/lib/fable/command_line/fem_include_search_paths.py -> build/bdist.linux-ppc64le/wheel/./fable/command_line copying build/lib/fable/command_line/insert_write_at_start_of_each_procedure.py -> build/bdist.linux-ppc64le/wheel/./fable/command_line copying build/lib/fable/command_line/cout.py -> build/bdist.linux-ppc64le/wheel/./fable/command_line copying build/lib/fable/command_line/read.py -> build/bdist.linux-ppc64le/wheel/./fable/command_line creating build/bdist.linux-ppc64le/wheel/libtbx copying build/lib/libtbx/crossmingw.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/cli.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_run_tests_parallel_unique_dirs.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/program_template.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_conda_dispatcher.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_xmlrpc_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/object_oriented_patterns.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_easy_pickle.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/containers.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/development copying build/lib/libtbx/development/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/development copying build/lib/libtbx/development/xcode_build_phase.py -> build/bdist.linux-ppc64le/wheel/./libtbx/development copying build/lib/libtbx/development/timers.py -> build/bdist.linux-ppc64le/wheel/./libtbx/development copying build/lib/libtbx/development/except_Exception.py -> build/bdist.linux-ppc64le/wheel/./libtbx/development copying build/lib/libtbx/complex_math.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/env_config.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/langchain creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_metadata.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/transport.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/planner.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/perceive_checks.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phenix_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/contract.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_safety_docs.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/structure_model.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/best_files_tracker.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_registry.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/sanity_checker.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_extractor.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/placement_checker.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/thinking_agent.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/template_builder.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/format_validation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_inspector.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/config_loader.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phil_validator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/dry_run_manager.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/raw_advice_scanner.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_state.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/kb_tags.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_logic_doc.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_validator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/intent_classifier.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/yaml_tools.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rules_selector.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_postprocessor.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/gate_evaluator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_builder.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/nl_to_phil.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/plan_generator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metric_evaluator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/pattern_manager.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_history.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/docs_tools.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metrics_analyzer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_validator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_classifier.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_engine.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_analyzer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/strategy_memory.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rate_limit_handler.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session_tools.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/failure_diagnoser.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/mtz_inspector.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/memory.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_nodes.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/log_section_extractor.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/tst_agent_enhancements.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/display_data_model.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/api_client.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/hypothesis_evaluator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_state.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_formatter.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/advice_preprocessor.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_log.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/agent creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/yaml_loader.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_schema.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/metric_patterns.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_template_loader.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/thinking_prompts.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/phenix_programs.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts_hybrid.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/explanation_prompts.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/summary_display.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/html_report_template.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/program_registration.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/api_schema.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/kb_loader.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/run_build_db.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain copying build/lib/libtbx/langchain/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/examples copying build/lib/libtbx/langchain/examples/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/examples creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/base.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/commands creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/summarizer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/state_extractor.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/agent_session_analyzer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/log_info.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/analyzer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/analysis creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/_chroma_resilience.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/document_loader.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/retriever.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/vector_store.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/rag creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/core copying build/lib/libtbx/langchain/core/_build_info.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/types.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/_version.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/llm.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/core creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/text_processing.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/query.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/run_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/run_inspect_db.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dry_run.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase9_llm_perturbation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_scenario_tracer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_portkey_embedding_model.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_contract_compliance.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_display_data_model.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_v120_providers.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extraction_failure_visibility.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_phases_session_blocking.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_gate_evaluator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase7_routing_simulation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_silent_stop_abort_messages.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_state.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_perceive_stop_checks.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_resolution_stop.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_classifier.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_tools.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cc_key_extraction.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_data_input_filter.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_general_resolver.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_shared_code_imports.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_langchain_tools.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_history_analysis.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autobuild_hl_recovery.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_defense.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_sanity_checker.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_condition_fix.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validate_file_overrides.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_template.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_layer_diagnostics.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase0_static_audit.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fabricated_stop_condition.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase5_error_classification.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_decision_flow.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_v112_13_fixes.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_explanation_prompts.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_solve_action_keywords.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_categorizer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_predict_and_build_no_ncs.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_skip_promotion.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase2_path_consistency.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_flags_missing.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_condition_false_positive.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_analyzer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dock_and_stop.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_old_client_compat.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phaser_multimodel.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_default_models.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_user_advice_filter.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_raw_advice_scanner.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/canary_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_optional_dep_resilience.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_categorization.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_protocol_version.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/run_llm_tests.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/framework.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_c1_raw_authority.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_framework_self.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/canary_check.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_planning.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_directive_extraction.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/tst_directive_extractor_grounding.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_best_files_tracker.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase4_history_flags.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_n_bugs.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_generate_guard.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase8_command_building.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_h17_strip_executor.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/run_all_tests.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_canary.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_after_program_prompt.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_diagnosed_failure_stop.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metric_patterns.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extended_stop_phrasings.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_standalone_consistency.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_strategy_memory.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_schema.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_initialize_plan_smoke.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hardcoded_cleanup.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_crosscheck.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_simple_extractor_validation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_supported_providers_single_source.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_abort_message_all_stops.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_log_extractor.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validation_history.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_structure_model.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_spurious_stop_after_requested.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_reactive_deviation_hold.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cryoem_stop_validation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_summary_display.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_transport.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_complete_stop.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validate_step_after_program_guard.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_generator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_grounding_stop_after_requested.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metrics_analyzer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_requirements.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_resume_reopen_stages.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_copies_tracking.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase6_category_consumer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dependencies.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_agent.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rebuild_template_selection.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/test_api_keys.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fix_verification.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validator_typo_hints.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_lead_program_offer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_sequence_only_routing.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_preprocessor_file_override.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_new_programs.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_refine_final_rfree.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_llm_unavailable_notice.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_bug5.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_directives.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extract_raw_advice.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_system.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autobuild_sequence_waiver.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_tools.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/audit_phase_rename.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_audit_fixes.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_settings_list_coercion.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_advice_preprocessing.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_action_item_1.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_lock_reconciliation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_obs_labels_auto_fill.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_state_serialization.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_registration.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_planning_framework.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_provider_error_classification.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_prompt.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_serialization_symmetry.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/integration/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/tst_safe_float_consolidation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autosol_bugs.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_codes.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_space_group_validation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_docs_tools.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_provider_lock.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phil_namespace_cleaner.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase1_contract_gaps.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_api_schema.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_pattern_manager.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_diagnostic_messages.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_classify_mtz_type_001.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_summary.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_reasoning_command_divergence.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_formatter_file_categories.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_intent_classifier.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directives_integration.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_skip_to_program.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_agent_build_info.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_config.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_command_builder.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/analyze_tutorial_runs.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phil_validation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_placement_skip_rebuild.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase2b_activation.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_integration.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_encoding.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hypothesis_evaluator.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_force_no_ai_server.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_backward_compat.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_step1f_single_emit.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_after_program_fill_from_raw.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_ligand_workflow_restart.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_density_modify_experiment_type.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/phenix_knowledge.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain creating build/bdist.linux-ppc64le/wheel/libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/base.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain/strategies copying build/lib/libtbx/langchain/run_query_docs.py -> build/bdist.linux-ppc64le/wheel/./libtbx/langchain copying build/lib/libtbx/tst_citation_encoding.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/easy_mp.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/sphinx copying build/lib/libtbx/sphinx/python_string.py -> build/bdist.linux-ppc64le/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/pubmed.py -> build/bdist.linux-ppc64le/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/phil.py -> build/bdist.linux-ppc64le/wheel/./libtbx/sphinx copying build/lib/libtbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/objgraph.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/console_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_mahalanobis.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/smart_open.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/server copying build/lib/libtbx/server/FileServer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/server copying build/lib/libtbx/server/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/server copying build/lib/libtbx/server/SocketServer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/server copying build/lib/libtbx/server/StartServer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/server copying build/lib/libtbx/server/FileClient.py -> build/bdist.linux-ppc64le/wheel/./libtbx/server copying build/lib/libtbx/server/FileSocket.py -> build/bdist.linux-ppc64le/wheel/./libtbx/server copying build/lib/libtbx/pkg_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/str_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/metric_prefixes.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_add_docstrings_with_ai.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/progress.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_version.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_program_template.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/configure.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/pyframe.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/pyplot.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/clear_paths.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/test_utils copying build/lib/libtbx/test_utils/parallel.py -> build/bdist.linux-ppc64le/wheel/./libtbx/test_utils copying build/lib/libtbx/test_utils/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/test_utils copying build/lib/libtbx/tst_find_unused_imports.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_str_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_citations.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/binary_search.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_dlite.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/xmlrpc_server_example.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/option_parser.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_easy_mp_multicore.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/python_code_parsing.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/resource_monitor.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/log.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/find_reference_cycles.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/assert_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/runtime_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_binary_search.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/table_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/introspection.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_fully_buffered_timeout.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/pbs_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/lsf.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/communication.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/remote.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/tst.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/sge_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling_helpers.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/looping.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils creating build/bdist.linux-ppc64le/wheel/libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/status.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/transfer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/util.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/polling.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/submission.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/errors.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/generic.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling.py -> build/bdist.linux-ppc64le/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/start_print_trace.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/citations.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/load_env.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/libtbx_refresh.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/math_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/version.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/easy_pickle.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/clusterTests.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/subprocess_with_fixes.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_topological_sort.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_python_code_parsing.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/cluster.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/auto_build copying build/lib/libtbx/auto_build/install_base_packages.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/rpath.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/package_defs.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/regenerate_module_files.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_installer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_exe.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_distribution.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/make_bundle.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_cctbx_bundle_for_installer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/installer_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/bootstrap.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_app.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_pkg.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/setup_installer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_conda.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/plus_installer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_installer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/write_gui_dispatcher_include.py -> build/bdist.linux-ppc64le/wheel/./libtbx/auto_build copying build/lib/libtbx/tst_easy_mp_state.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/scheduling copying build/lib/libtbx/scheduling/mainthread.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/parallel_for.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/cluster_handler.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/job_scheduler.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/stacktrace.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/shared_resource.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/mp_handler.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/thread_handler.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/process_pool.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/file_queue.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/result.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/socket_queue.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/philgen.py -> build/bdist.linux-ppc64le/wheel/./libtbx/scheduling copying build/lib/libtbx/tst_thread_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/easy_profile.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/phil copying build/lib/libtbx/phil/command_line.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/phil/experimental.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/phil/tokenizer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_interface.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/phil/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/phil/gui_objects.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_tokenizer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/phil/interface.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/phil/parser.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_experimental.py -> build/bdist.linux-ppc64le/wheel/./libtbx/phil copying build/lib/libtbx/path.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/forward_compatibility.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_containers.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_scheduling.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/bundle copying build/lib/libtbx/bundle/copy_build_libtbx.py -> build/bdist.linux-ppc64le/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_bat.py -> build/bdist.linux-ppc64le/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_all.py -> build/bdist.linux-ppc64le/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_runtime_sources.py -> build/bdist.linux-ppc64le/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_csh.py -> build/bdist.linux-ppc64le/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx/bundle copying build/lib/libtbx/tst_math_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_object_oriented_patterns.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/xmlrpc_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/code_analysis.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/wingide.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/try_hello_world_c.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/word_index_generator.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_path.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/file_clutter.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_run_tests_parallel_retry.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_runtime_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_representation.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_word_index_generator.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/program_utils copying build/lib/libtbx/program_utils/statistics_info.py -> build/bdist.linux-ppc64le/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/result.py -> build/bdist.linux-ppc64le/wheel/./libtbx/program_utils copying build/lib/libtbx/thread_utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/utils.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/dlite.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/simplexml.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/tst_easy_mp.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/easy_run.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/libtbx/command_line copying build/lib/libtbx/command_line/show_date_and_time.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/ipython_shell_start.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_variable_names.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_dist_paths.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/cctbx_chunk.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_commands.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_files.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/printenv.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/any2unix.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_path.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/check_libcpp.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_host_and_user.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/seconds_since_the_epoch.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_available_slots.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_ext.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_clutter.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_tests_parallel.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_source_files_sorted_by_size.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_tests.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/easy_qsub.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/line_count.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_python.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/dtrace.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/resource_monitor_plot.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_selfx.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_env.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_line_count.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clear_paths.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_not_show_diff.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_dependencies.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_bin_path.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_include_paths.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numpy_version.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_qstat_counts.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_reserved_names.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bundle_as_exe.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports_crude.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_tree.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_but_no_repr.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_sphinx_html.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/raise_exception_for_testing.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_installer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/env_run.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/nequal.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_unused_imports.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_windows_exe.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/path_utility.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sphinx_build.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_module_dependencies.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/py_compile_all.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_old_style_classes.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_lib_path.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_pickled_function.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_cctbx_bundle_for_installer.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_options.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_repository_paths.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_unzipsfx.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_binary_bundle.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/epydoc_run.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/reindent.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/scons.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clean_clutter.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remote_processing.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_process.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_untested.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/add_docstrings_with_ai.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/wait_for_file.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/parallel_simple.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/prime_factors_of.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_pythonpath.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/phil.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/git_avoid_merges.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bootstrap.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_mac_app.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_number_of_processors.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_dist.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numeric_version.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_in_repositories.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install_conda.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/extract_code_from_txt.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_install_script_bat.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_under_build.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_environ_usage.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_pdb_mmcif_problems.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_modules.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_full_command_path.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_ends_with.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_contains_strings.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/analyse_code_comments.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_all_on_path.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/help.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_sys_executable.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_files.py -> build/bdist.linux-ppc64le/wheel/./libtbx/command_line copying build/lib/libtbx/mpi4py.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/topological_sort.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/cpp_function_name.py -> build/bdist.linux-ppc64le/wheel/./libtbx copying build/lib/libtbx/callbacks.py -> build/bdist.linux-ppc64le/wheel/./libtbx creating build/bdist.linux-ppc64le/wheel/cctbx_website copying build/lib/cctbx_website/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website copying build/lib/cctbx_website/libtbx_refresh.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website copying build/lib/cctbx_website/run_tests.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website creating build/bdist.linux-ppc64le/wheel/cctbx_website/regression copying build/lib/cctbx_website/regression/tst_11_script_1.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_12_script_compare_ss.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_13_script_ideal_ss.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_2_doc_hlo_intro.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_15_doc_models_hierarchy.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_py_from_html.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_8_doc_maps_intro.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_18_doc_programming_tips_2.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/exercise.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_9_doc_maps_boxing.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_17_script_rfactors.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_1_template.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_19_doc_programming_tips_3.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_10_doc_programming_tips_1.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/regression creating build/bdist.linux-ppc64le/wheel/cctbx_website/command_line copying build/lib/cctbx_website/command_line/run_pdoc_cctbx_api.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_for_boost.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/tst_comment_to_docstring.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_html.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/comment_to_docstring.py -> build/bdist.linux-ppc64le/wheel/./cctbx_website/command_line creating build/bdist.linux-ppc64le/wheel/ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/tst.py -> build/bdist.linux-ppc64le/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/copy_files.py -> build/bdist.linux-ppc64le/wheel/./ccp4io_adaptbx creating build/bdist.linux-ppc64le/wheel/boost_adaptbx copying build/lib/boost_adaptbx/hybrid_times.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx creating build/bdist.linux-ppc64le/wheel/boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/__init__.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/tuple.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/optional.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/std_pair.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/rational.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/python.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/libtbx_refresh.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx creating build/bdist.linux-ppc64le/wheel/boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/maximum_clique.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/breadth_first_search.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/metric.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/__init__.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/graph_structure_comparison.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/min_cut_max_flow.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/connected_component_algorithm.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/clustering_algorithm.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/minimum_cut_enumerate.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/utility.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/graph creating build/bdist.linux-ppc64le/wheel/boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/double_overflow.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/gcd.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/lcm.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_platform_info.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/segmentation_fault.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/divide_by_zero.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/int_overflow.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_environ_usage.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/inexact.py -> build/bdist.linux-ppc64le/wheel/./boost_adaptbx/command_line creating build/bdist.linux-ppc64le/wheel/cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/masks copying build/lib/cctbx/masks/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/masks creating build/bdist.linux-ppc64le/wheel/cctbx/development copying build/lib/cctbx/development/electron_density_sampling.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/debug_utils.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/structure_factor_utils.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_hl.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/create_models_or_maps.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx76.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/make_settings.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/make_cns_input.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/github.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/direct_or_fft.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_epsilon.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/cns_density_modification.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/random_structure.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/fmt_utils.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/approx_amplitude_vs_resolution.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/space_group_option_parser.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx.py -> build/bdist.linux-ppc64le/wheel/./cctbx/development copying build/lib/cctbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/xray copying build/lib/cctbx/xray/ext.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray creating build/bdist.linux-ppc64le/wheel/cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_direct.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_base.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/misc.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradient_flags.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/algorithm.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_fft.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/manager.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/global_counters.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_fft.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray copying build/lib/cctbx/xray/observation_types.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray copying build/lib/cctbx/xray/structure.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray copying build/lib/cctbx/xray/minimization.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray creating build/bdist.linux-ppc64le/wheel/cctbx/xray/observations copying build/lib/cctbx/xray/observations/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/observations/tst_observations.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/weighting_schemes.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray copying build/lib/cctbx/xray/target_functors.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray copying build/lib/cctbx/xray/scatterer.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray creating build/bdist.linux-ppc64le/wheel/cctbx/xray/targets copying build/lib/cctbx/xray/targets/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_r1.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/r1.py -> build/bdist.linux-ppc64le/wheel/./cctbx/xray/targets creating build/bdist.linux-ppc64le/wheel/cctbx/crystal copying build/lib/cctbx/crystal/distance_based_connectivity.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/reindex.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/coordination_sequences.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_distance_based_connectivity.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/close_packing.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/direct_space_asu.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_super_cell.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/super_cell.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_ext.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/find_best_cell.py -> build/bdist.linux-ppc64le/wheel/./cctbx/crystal creating build/bdist.linux-ppc64le/wheel/cctbx/examples copying build/lib/cctbx/examples/reduced_cell_two_folds.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/location_part.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_2.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_transform.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_refinement.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_3.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_constraints.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_distances_using_cpp_objects.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/analyze_adp.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/lebedev_2005_perturbation.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/hirshfeld_test.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/list_non_principal_continuous_shifts.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_puckers.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/neutron_structure_factors.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/ccp4_map.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/fft_map_electron_density_around_atom.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/sub_group_graph.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_3.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/symops_530.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/change_hand_p31.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_consistency_checks.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_4.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/exp_i_alpha_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples creating build/bdist.linux-ppc64le/wheel/cctbx/examples/merging copying build/lib/cctbx/examples/merging/show_results.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/sigma_correction.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test1.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/task4.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_cc_half.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_utilities.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_subset.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging creating build/bdist.linux-ppc64le/wheel/cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/join.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/scale.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/test_levenberg_sparse.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/tst_permutations.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/view_fft_map.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_minimizers.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/space_subgroups.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/adp_symmetry_constraints.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/convert_ccp4_symop_lib.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/all_axes.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/space_group_matrices.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_alpha_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/maximum_subgroups.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/getting_started.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/quartz_structure.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/steve_collins.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_f_calc.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_partial_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_common_sets.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_phase_o_phrenia.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/phase_o_phrenia.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_space_subgroups.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples creating build/bdist.linux-ppc64le/wheel/cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/tst_structure_factor_derivatives_2.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_4.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_table.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/map_skewness.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/f_model_example.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_primitive_cell.py -> build/bdist.linux-ppc64le/wheel/./cctbx/examples creating build/bdist.linux-ppc64le/wheel/cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/auto_linking_types.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_proxy_registry.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/lbfgs.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/standard_cif_links.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/flags.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/energies.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/base_geometry.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_ext.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_angle_derivs.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/distance_least_squares.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/linking_class.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/manager.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_motif.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry_restraints creating build/bdist.linux-ppc64le/wheel/cctbx/geometry copying build/lib/cctbx/geometry/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/geometry copying build/lib/cctbx/adptbx.py -> build/bdist.linux-ppc64le/wheel/./cctbx copying build/lib/cctbx/crystal_orientation.py -> build/bdist.linux-ppc64le/wheel/./cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/source_generators copying build/lib/cctbx/source_generators/flex_fwd_h.py -> build/bdist.linux-ppc64le/wheel/./cctbx/source_generators copying build/lib/cctbx/source_generators/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/source_generators creating build/bdist.linux-ppc64le/wheel/cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/bdist.linux-ppc64le/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/bdist.linux-ppc64le/wheel/./cctbx/source_generators/eltbx creating build/bdist.linux-ppc64le/wheel/cctbx/array_family copying build/lib/cctbx/array_family/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/array_family copying build/lib/cctbx/array_family/flex.py -> build/bdist.linux-ppc64le/wheel/./cctbx/array_family copying build/lib/cctbx/statistics.py -> build/bdist.linux-ppc64le/wheel/./cctbx copying build/lib/cctbx/french_wilson.py -> build/bdist.linux-ppc64le/wheel/./cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/merging copying build/lib/cctbx/merging/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/merging copying build/lib/cctbx/merging/brehm_diederichs.py -> build/bdist.linux-ppc64le/wheel/./cctbx/merging creating build/bdist.linux-ppc64le/wheel/cctbx/sgtbx copying build/lib/cctbx/sgtbx/show_cosets.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_twin_laws.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/pointgroup_tools.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/rational_matrices_point_groups.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/sub_lattice_tools.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/subgroups.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_pg_tools.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/plane_groups.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/bravais_types.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/cosets.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx creating build/bdist.linux-ppc64le/wheel/cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/reference_table.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx/direct_space_asu creating build/bdist.linux-ppc64le/wheel/cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/lattice_symmetry.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/sys_abs_equiv.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/symbol_confidence.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/literal_description.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/harker.py -> build/bdist.linux-ppc64le/wheel/./cctbx/sgtbx copying build/lib/cctbx/symmetry_search.py -> build/bdist.linux-ppc64le/wheel/./cctbx copying build/lib/cctbx/euclidean_model_matching.py -> build/bdist.linux-ppc64le/wheel/./cctbx copying build/lib/cctbx/libtbx_refresh.py -> build/bdist.linux-ppc64le/wheel/./cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/miller copying build/lib/cctbx/miller/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/miller copying build/lib/cctbx/miller/reindexing.py -> build/bdist.linux-ppc64le/wheel/./cctbx/miller copying build/lib/cctbx/miller/display.py -> build/bdist.linux-ppc64le/wheel/./cctbx/miller copying build/lib/cctbx/miller/tst_reindexing.py -> build/bdist.linux-ppc64le/wheel/./cctbx/miller copying build/lib/cctbx/miller/tst_map_to_asu_isym.py -> build/bdist.linux-ppc64le/wheel/./cctbx/miller creating build/bdist.linux-ppc64le/wheel/cctbx/omz copying build/lib/cctbx/omz/cod_select_and_pickle.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/omz/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/omz/dev.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_dev.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_bfgs.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/omz/pdb_dev.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/omz/cod_refine.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/omz/cif_refine.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/omz/tardy_adaptor.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/omz/eval_iso_vs_refined.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/omz/bfgs.py -> build/bdist.linux-ppc64le/wheel/./cctbx/omz copying build/lib/cctbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./cctbx copying build/lib/cctbx/math_module.py -> build/bdist.linux-ppc64le/wheel/./cctbx copying build/lib/cctbx/anharmonic.py -> build/bdist.linux-ppc64le/wheel/./cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/flags.py -> build/bdist.linux-ppc64le/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/energies.py -> build/bdist.linux-ppc64le/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/tst_ext.py -> build/bdist.linux-ppc64le/wheel/./cctbx/adp_restraints copying build/lib/cctbx/dmtbx.py -> build/bdist.linux-ppc64le/wheel/./cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/web copying build/lib/cctbx/web/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/explore_symmetry.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/emma.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/change_basis.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/change_setting.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/replay.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/io_utils.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/browse_settings.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/change_hand.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/lattice_symmetry.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/all_axes.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/multiple_cell.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/libtbx_help.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/dispatcher.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/cgi_utils.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/iotbx_cif_validate.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/wyckoff.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/shelx.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors_pdb.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/phase_o_phrenia.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web copying build/lib/cctbx/web/frac_cart.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web creating build/bdist.linux-ppc64le/wheel/cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_index.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/web_links.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_asu.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/guide_to_notation.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jvx.py -> build/bdist.linux-ppc64le/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/translation_search.py -> build/bdist.linux-ppc64le/wheel/./cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/maptbx copying build/lib/cctbx/maptbx/fsc_curve.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_target_and_gradients.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_mask.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_curves.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/segment_and_split_map.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/refine_scales_errors.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_real_space_refinement_simple.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_docking.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/map_symmetry.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/resolution_from_map_and_model.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/box.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/auto_sharpen.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/minimization.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_ccp.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx creating build/bdist.linux-ppc64le/wheel/cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_table.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_qmap_02.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_two_atoms.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/bcr.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_adp_refine.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_example.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm2.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/qmap.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/compute_tables.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/real_space_refinement_simple.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/servalcat_difference_map.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mask.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_asymmetric_map.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/refine_sharpening.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/qscore.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_peak_volume_estimate.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_qscore.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_MapPeakLocator.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_refinement.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mem.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_bcr.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation_2.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_loft.py -> build/bdist.linux-ppc64le/wheel/./cctbx/maptbx creating build/bdist.linux-ppc64le/wheel/cctbx/eltbx copying build/lib/cctbx/eltbx/distance_based_connectivity.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/wavelengths.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx creating build/bdist.linux-ppc64le/wheel/cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/rez_rez_grant.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_fits.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/hydrogen_plots.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_fits.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/e_scattering_plots.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_kissel.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_approx.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_io.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/format_gaussian_fits.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_cross_validation.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_section61_io.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/combine_fits.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/sasaki.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/henke.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/gaussian_fit.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/tiny_pse.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx creating build/bdist.linux-ppc64le/wheel/cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/xray_scattering/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/van_der_waals_radii.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/formula.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/read_custom_scattering_dict.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/fp_fdp.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/attenuation_coefficient.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/covalent_radii.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/chemical_elements.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/icsd_radii.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/neutron.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/e_scattering.py -> build/bdist.linux-ppc64le/wheel/./cctbx/eltbx copying build/lib/cctbx/r_free_utils.py -> build/bdist.linux-ppc64le/wheel/./cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/neutron copying build/lib/cctbx/neutron/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/neutron creating build/bdist.linux-ppc64le/wheel/cctbx/macro_mol copying build/lib/cctbx/macro_mol/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/macro_mol copying build/lib/cctbx/macro_mol/rotation_parameters.py -> build/bdist.linux-ppc64le/wheel/./cctbx/macro_mol copying build/lib/cctbx/run_examples.py -> build/bdist.linux-ppc64le/wheel/./cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973_table_1.py -> build/bdist.linux-ppc64le/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/uctbx creating build/bdist.linux-ppc64le/wheel/cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/determine_unit_cell/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/krivy_gruber_1976.py -> build/bdist.linux-ppc64le/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973.py -> build/bdist.linux-ppc64le/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/reduction_base.py -> build/bdist.linux-ppc64le/wheel/./cctbx/uctbx copying build/lib/cctbx/multipolar.py -> build/bdist.linux-ppc64le/wheel/./cctbx creating build/bdist.linux-ppc64le/wheel/cctbx/covariance copying build/lib/cctbx/covariance/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/covariance creating build/bdist.linux-ppc64le/wheel/cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_niggli_reduction_cpp.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_twin_target.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_merge_equivalents.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_triplet_generator.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_amplitude_normalisation.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_fft_map.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_site_constraints.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_statistics.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reflection_statistics.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_structure_factors.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_space_asu.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_create_models_or_maps.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_pickling.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_aniso_restraints.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sf_low_res_accuracy.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem_2.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reciprocal_space_asu.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_subgroups.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_expand_to_p1.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pointgroup_tools.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_scaling.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_math_module.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_coordination_sequences.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_statistics_graphs.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fast_nv1995.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_change_basis.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_web_change_basis.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_weighting_schemes.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_double_step_filtration.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wilson_plot.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_harker.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_lookup_utils.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grouped_data.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_find_best_cell.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fcalc_fft_stability.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications_rm.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_close_packing.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_show_cosets.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_target_functors.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_r_free_utils.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_asu_clusters.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_french_wilson.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints_cartesian.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_diffuse.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_emma.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_f_model.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wavelength_units.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_fast_gradients.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_derivatives.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pair_asu_table.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_krivy_gruber.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_loc_res.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_2.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_box.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sampled_model_density.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sphericity.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_refine_xray_curvs.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_is_periodic.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_data_manipulation.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_prepare_map_for_docking.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization_failure.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity_allsym.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_mask.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_denominators.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization.py -> build/bdist.linux-ppc64le/wheel/./cctbx/regression creating build/bdist.linux-ppc64le/wheel/cctbx/command_line copying build/lib/cctbx/command_line/cod_select_and_pickle.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/find_reticular_twin_laws.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/eltbx.show_fp_fdp.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_scale.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/segment_and_split_map.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/wavelength_units.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/subgroups.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/space_group_info.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/form_factor_query.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/diffuse.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/auto_sharpen.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/precession_view.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/euclidean_model_matching.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/structure_factor_timings.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/version.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/qscore.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/brehm_diederichs.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_join.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cctbx_test_nightly.py -> build/bdist.linux-ppc64le/wheel/./cctbx/command_line creating build/bdist.linux-ppc64le/wheel/cootbx copying build/lib/cootbx/validation_lists.py -> build/bdist.linux-ppc64le/wheel/./cootbx copying build/lib/cootbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./cootbx copying build/lib/cootbx/hydrogens_button.py -> build/bdist.linux-ppc64le/wheel/./cootbx copying build/lib/cootbx/ligand_checklist.py -> build/bdist.linux-ppc64le/wheel/./cootbx copying build/lib/cootbx/watch_file.py -> build/bdist.linux-ppc64le/wheel/./cootbx copying build/lib/cootbx/interactive_edit.py -> build/bdist.linux-ppc64le/wheel/./cootbx copying build/lib/cootbx/xmlrpc_server.py -> build/bdist.linux-ppc64le/wheel/./cootbx copying build/lib/cootbx/view_refinement.py -> build/bdist.linux-ppc64le/wheel/./cootbx copying build/lib/cootbx/simple_zoom_list.py -> build/bdist.linux-ppc64le/wheel/./cootbx creating build/bdist.linux-ppc64le/wheel/fftw3tbx copying build/lib/fftw3tbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./fftw3tbx copying build/lib/fftw3tbx/libtbx_refresh.py -> build/bdist.linux-ppc64le/wheel/./fftw3tbx copying build/lib/fftw3tbx/tst_ext.py -> build/bdist.linux-ppc64le/wheel/./fftw3tbx creating build/bdist.linux-ppc64le/wheel/serialtbx copying build/lib/serialtbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./serialtbx creating build/bdist.linux-ppc64le/wheel/serialtbx/util copying build/lib/serialtbx/util/time.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/util copying build/lib/serialtbx/util/__init__.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/util copying build/lib/serialtbx/util/construct_frame.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/util copying build/lib/serialtbx/util/energy_scan_notch_finder.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/util creating build/bdist.linux-ppc64le/wheel/serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/__init__.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/max_like.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/util.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/mono_simulation creating build/bdist.linux-ppc64le/wheel/serialtbx/detector copying build/lib/serialtbx/detector/__init__.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/cspad.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/jungfrau.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/rayonix.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/xtc.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/detector creating build/bdist.linux-ppc64le/wheel/serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/metrology.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/generic_detector.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/__init__.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/cspad_detector.py -> build/bdist.linux-ppc64le/wheel/./serialtbx/detector/legacy_metrology creating build/bdist.linux-ppc64le/wheel/xcif copying build/lib/xcif/__init__.py -> build/bdist.linux-ppc64le/wheel/./xcif copying build/lib/xcif/run_tests.py -> build/bdist.linux-ppc64le/wheel/./xcif creating build/bdist.linux-ppc64le/wheel/xcif/benchmarks copying build/lib/xcif/benchmarks/__init__.py -> build/bdist.linux-ppc64le/wheel/./xcif/benchmarks copying build/lib/xcif/benchmarks/run_benchmarks.py -> build/bdist.linux-ppc64le/wheel/./xcif/benchmarks creating build/bdist.linux-ppc64le/wheel/xcif/regression copying build/lib/xcif/regression/tst_pdb_coordinates.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_parse.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_parse_verify.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_string_interning.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/__init__.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_gil_release.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_api_compat.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_quoted_string_delimiter.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_bindings.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_memory.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_non_strict_mode.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_semicolon_field_strict.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_parity.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_tokenize.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_engine.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_roundtrip.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_sf.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression copying build/lib/xcif/regression/tst_utf8.py -> build/bdist.linux-ppc64le/wheel/./xcif/regression creating build/bdist.linux-ppc64le/wheel/scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/tst.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graphics_utils creating build/bdist.linux-ppc64le/wheel/scitbx/rigid_body copying build/lib/scitbx/rigid_body/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body copying build/lib/scitbx/rigid_body/tst.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body creating build/bdist.linux-ppc64le/wheel/scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/featherstone.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/body_lib.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_energy_plots.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/wx_tardy.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/spatial_lib.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_tardy.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tardy.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/joint_lib.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/make_bundles.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_basic.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/essence creating build/bdist.linux-ppc64le/wheel/scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_singular.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/featherstone.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion_hard.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_spherical_refinement.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_featherstone.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_joint_lib.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_utils.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_simulation.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/joint_lib.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_free_motion.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_molecules.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/free_motion_reference_impl.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_joint_lib.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/utils.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_molecules.py -> build/bdist.linux-ppc64le/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/direct_search_simulated_annealing.py -> build/bdist.linux-ppc64le/wheel/./scitbx copying build/lib/scitbx/regular_grid_on_unit_sphere.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/stl copying build/lib/scitbx/stl/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/stl copying build/lib/scitbx/stl/set.py -> build/bdist.linux-ppc64le/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_map.py -> build/bdist.linux-ppc64le/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_vector.py -> build/bdist.linux-ppc64le/wheel/./scitbx/stl copying build/lib/scitbx/stl/map.py -> build/bdist.linux-ppc64le/wheel/./scitbx/stl copying build/lib/scitbx/stl/vector.py -> build/bdist.linux-ppc64le/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_set.py -> build/bdist.linux-ppc64le/wheel/./scitbx/stl creating build/bdist.linux-ppc64le/wheel/scitbx/wigner copying build/lib/scitbx/wigner/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/wigner copying build/lib/scitbx/wigner/tst_wigner3j.py -> build/bdist.linux-ppc64le/wheel/./scitbx/wigner creating build/bdist.linux-ppc64le/wheel/scitbx/serialization copying build/lib/scitbx/serialization/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/serialization creating build/bdist.linux-ppc64le/wheel/scitbx/sparse copying build/lib/scitbx/sparse/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/sparse creating build/bdist.linux-ppc64le/wheel/scitbx/sparse/boost_python copying build/lib/scitbx/sparse/boost_python/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/sparse/boost_python creating build/bdist.linux-ppc64le/wheel/scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_sparse.py -> build/bdist.linux-ppc64le/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_lu_factorization.py -> build/bdist.linux-ppc64le/wheel/./scitbx/sparse/tests copying build/lib/scitbx/differential_evolution.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/lstbx copying build/lib/scitbx/lstbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lstbx copying build/lib/scitbx/lstbx/normal_eqns_solving.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lstbx creating build/bdist.linux-ppc64le/wheel/scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/boost_python/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lstbx/boost_python creating build/bdist.linux-ppc64le/wheel/scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/test_problems.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/tst_normal_equations.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lstbx/tests creating build/bdist.linux-ppc64le/wheel/scitbx/lstbx/benchmarks copying build/lib/scitbx/lstbx/benchmarks/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lstbx/benchmarks copying build/lib/scitbx/lstbx/normal_eqns.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lstbx copying build/lib/scitbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx copying build/lib/scitbx/minimizers.py -> build/bdist.linux-ppc64le/wheel/./scitbx copying build/lib/scitbx/smoothing.py -> build/bdist.linux-ppc64le/wheel/./scitbx copying build/lib/scitbx/genetic_algorithm_with_mp.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/examples copying build/lib/scitbx/examples/minimizer_comparisons.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples creating build/bdist.linux-ppc64le/wheel/scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/silver.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/flex_grid.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/functions.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_linear_least_squares_fit.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_array_loops.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/integrating_a_weighted_sinc_function.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/immoptibox_ports.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/principal_axes_of_inertia.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/rigid_body_refinement_core.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_recipe.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/bootstrap.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/examples/chebyshev_lsq_example.py -> build/bdist.linux-ppc64le/wheel/./scitbx/examples copying build/lib/scitbx/cross_entropy.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/glmtbx copying build/lib/scitbx/glmtbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/glmtbx creating build/bdist.linux-ppc64le/wheel/scitbx/glmtbx/boost_python copying build/lib/scitbx/glmtbx/boost_python/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/glmtbx/boost_python creating build/bdist.linux-ppc64le/wheel/scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/tst.py -> build/bdist.linux-ppc64le/wheel/./scitbx/glmtbx/tests creating build/bdist.linux-ppc64le/wheel/scitbx/boost_python copying build/lib/scitbx/boost_python/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/boost_python copying build/lib/scitbx/cubicle_neighbors.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/dtmin copying build/lib/scitbx/dtmin/realsymmetricpseudoinverse.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/bounds.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/refinebase.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/min_logging.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/reparams.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/minimizer.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/compulsory.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/optional.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/twisted_gaussian.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/auxiliary.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin creating build/bdist.linux-ppc64le/wheel/scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_basic.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_twisted.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_booth.py -> build/bdist.linux-ppc64le/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/golden_section_search.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/matrix copying build/lib/scitbx/matrix/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/matrix copying build/lib/scitbx/matrix/row_echelon.py -> build/bdist.linux-ppc64le/wheel/./scitbx/matrix creating build/bdist.linux-ppc64le/wheel/scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_householder.py -> build/bdist.linux-ppc64le/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_row_echelon.py -> build/bdist.linux-ppc64le/wheel/./scitbx/matrix/tests creating build/bdist.linux-ppc64le/wheel/scitbx/source_generators copying build/lib/scitbx/source_generators/flex_fwd_h.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators creating build/bdist.linux-ppc64le/wheel/scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_functors.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_apply.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_all.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_reductions.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/operator_functor_info.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_algebras.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_std_imports.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/lbfgs_fem.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/utils.py -> build/bdist.linux-ppc64le/wheel/./scitbx/source_generators creating build/bdist.linux-ppc64le/wheel/scitbx/array_family copying build/lib/scitbx/array_family/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family creating build/bdist.linux-ppc64le/wheel/scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_numpy_bridge.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_shared.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_smart_selection.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/regression_test.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex_argument_passing.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/shared.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family creating build/bdist.linux-ppc64le/wheel/scitbx/array_family/accessors copying build/lib/scitbx/array_family/accessors/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/accessors creating build/bdist.linux-ppc64le/wheel/scitbx/array_family/detail copying build/lib/scitbx/array_family/detail/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family/detail copying build/lib/scitbx/array_family/flex.py -> build/bdist.linux-ppc64le/wheel/./scitbx/array_family copying build/lib/scitbx/lbfgsb.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/suffixtree copying build/lib/scitbx/suffixtree/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/suffixtree creating build/bdist.linux-ppc64le/wheel/scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/boost_python/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/single.py -> build/bdist.linux-ppc64le/wheel/./scitbx/suffixtree creating build/bdist.linux-ppc64le/wheel/scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/tst_single.py -> build/bdist.linux-ppc64le/wheel/./scitbx/suffixtree/test copying build/lib/scitbx/libtbx_refresh.py -> build/bdist.linux-ppc64le/wheel/./scitbx copying build/lib/scitbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/iso_surface copying build/lib/scitbx/iso_surface/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/iso_surface copying build/lib/scitbx/iso_surface/tst_iso_surface.py -> build/bdist.linux-ppc64le/wheel/./scitbx/iso_surface creating build/bdist.linux-ppc64le/wheel/scitbx/python_utils copying build/lib/scitbx/python_utils/command_line.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/misc.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/graph_tools.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/robust_statistics.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_robust.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/random_transform.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/signal_utils.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/dicts.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_graph.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_random_transform.py -> build/bdist.linux-ppc64le/wheel/./scitbx/python_utils copying build/lib/scitbx/r3_utils.py -> build/bdist.linux-ppc64le/wheel/./scitbx copying build/lib/scitbx/restraints.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_mpi_split_evaluator.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_func_free_line_search.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_lbfgs_fem.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_curvatures.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lbfgs creating build/bdist.linux-ppc64le/wheel/scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/run.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/twisted_gaussian.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/tst_ext.py -> build/bdist.linux-ppc64le/wheel/./scitbx/lbfgs creating build/bdist.linux-ppc64le/wheel/scitbx/linalg copying build/lib/scitbx/linalg/ext.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/svd.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/householder.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg creating build/bdist.linux-ppc64le/wheel/scitbx/linalg/boost_python copying build/lib/scitbx/linalg/boost_python/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg/boost_python creating build/bdist.linux-ppc64le/wheel/scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_svd.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_matrix.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_cholesky.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_svd.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_dsyev.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_eigensystem.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/eigensystem.py -> build/bdist.linux-ppc64le/wheel/./scitbx/linalg copying build/lib/scitbx/simplex.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/tests copying build/lib/scitbx/tests/direct_search_simulated_annealing.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_r3_utils.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_cubicle_neighbors.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/differential_evolution.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/golden_section_search.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_smoothing.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_genetic_algorithm_with_mp.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_minimizer_lbfgs_general.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_regular_grid_on_unit_sphere.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/simplex.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_basic.py -> build/bdist.linux-ppc64le/wheel/./scitbx/tests creating build/bdist.linux-ppc64le/wheel/scitbx/slatec copying build/lib/scitbx/slatec/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/slatec copying build/lib/scitbx/fftpack.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/graph copying build/lib/scitbx/graph/rigidity_matrix_symbolic.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graph copying build/lib/scitbx/graph/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree_find_paths.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_utils.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graph copying build/lib/scitbx/graph/test_cases_tardy_pdb.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graph copying build/lib/scitbx/graph/tardy_tree.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_rigidity.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graph copying build/lib/scitbx/graph/utils.py -> build/bdist.linux-ppc64le/wheel/./scitbx/graph creating build/bdist.linux-ppc64le/wheel/scitbx/error copying build/lib/scitbx/error/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/error copying build/lib/scitbx/error/tst_error.py -> build/bdist.linux-ppc64le/wheel/./scitbx/error creating build/bdist.linux-ppc64le/wheel/scitbx/stdlib copying build/lib/scitbx/stdlib/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/stdlib creating build/bdist.linux-ppc64le/wheel/scitbx/misc copying build/lib/scitbx/misc/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/misc copying build/lib/scitbx/minpack.py -> build/bdist.linux-ppc64le/wheel/./scitbx creating build/bdist.linux-ppc64le/wheel/scitbx/random copying build/lib/scitbx/random/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/random creating build/bdist.linux-ppc64le/wheel/scitbx/random/boost_python copying build/lib/scitbx/random/boost_python/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/random/boost_python creating build/bdist.linux-ppc64le/wheel/scitbx/random/tests copying build/lib/scitbx/random/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/random/tests copying build/lib/scitbx/random/tests/tst_random.py -> build/bdist.linux-ppc64le/wheel/./scitbx/random/tests creating build/bdist.linux-ppc64le/wheel/scitbx/line_search copying build/lib/scitbx/line_search/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/line_search creating build/bdist.linux-ppc64le/wheel/scitbx/command_line copying build/lib/scitbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/generate_error_h.py -> build/bdist.linux-ppc64le/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/histogram.py -> build/bdist.linux-ppc64le/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/show_exp_times.py -> build/bdist.linux-ppc64le/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/show_sizes.py -> build/bdist.linux-ppc64le/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/unicode_examples.py -> build/bdist.linux-ppc64le/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/apply_tapenade_hints.py -> build/bdist.linux-ppc64le/wheel/./scitbx/command_line creating build/bdist.linux-ppc64le/wheel/scitbx/math copying build/lib/scitbx/math/fit_quadratic_function.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/fit_peak.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/scale_curves.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/tst_2d_zernike.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/tst_bessel_zeros.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/sphere_sphere_intersection.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_400.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/ext.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/tst_so3_lie_algebra.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/tst_undirected_graph.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/multiple_superposition.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/distributions.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian_fit.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/curve_fitting.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/undirected_graph.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math creating build/bdist.linux-ppc64le/wheel/scitbx/math/boost_python copying build/lib/scitbx/math/boost_python/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/boost_python copying build/lib/scitbx/math/spe.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/farey.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/besselk.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike_mom.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/clustering.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/euler_angles.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/periodogram.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math creating build/bdist.linux-ppc64le/wheel/scitbx/math/dev copying build/lib/scitbx/math/dev/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/dev copying build/lib/scitbx/math/des_3_100_13.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900_ylm.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/breakpoint.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/cubic_spline.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/so3_lie_algebra.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/incremental_SO3_sampling.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/minimum_covering_ellipsoid.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math creating build/bdist.linux-ppc64le/wheel/scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gcd.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_curve_fitting.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_bessel.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_angle_derivative.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_resample.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_tetrahedron.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_similarity_indices.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_quadratic_function.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_peak.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_halton.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_cubic_equation.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_quadrature.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_euler_angles.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_periodogram.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_orthonormal_basis.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_exp_functions.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_line_search.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_r3_rotation.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_g_function.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_weighted_correlation.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_superpose.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_dmatrix.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_uniform_rotation_matrix.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_clustering.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_math.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/tests copying build/lib/scitbx/math/chebyshev_lsq_fit.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/lefebvre.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/tst_multivariate_moments.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/superpose.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/des_3_240_21.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/zernike_align_fft.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math copying build/lib/scitbx/math/gumbel.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math creating build/bdist.linux-ppc64le/wheel/scitbx/math/erf copying build/lib/scitbx/math/erf/__init__.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math/erf copying build/lib/scitbx/math/sieve_of_eratosthenes.py -> build/bdist.linux-ppc64le/wheel/./scitbx/math creating build/bdist.linux-ppc64le/wheel/cma_es copying build/lib/cma_es/__init__.py -> build/bdist.linux-ppc64le/wheel/./cma_es copying build/lib/cma_es/run_tests.py -> build/bdist.linux-ppc64le/wheel/./cma_es copying build/lib/cma_es/tst_cma_es.py -> build/bdist.linux-ppc64le/wheel/./cma_es copying build/lib/cma_es/cma_es_interface.py -> build/bdist.linux-ppc64le/wheel/./cma_es creating build/bdist.linux-ppc64le/wheel/mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/masks copying build/lib/mmtbx/masks/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/tst_asu_mask.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/tst_masks.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/masks creating build/bdist.linux-ppc64le/wheel/mmtbx/tls copying build/lib/mmtbx/tls/perm11.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/command_line.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/decompose.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm15.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/optimise_amplitudes.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm12.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/ladp.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm13.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm14.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tools.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tls_as_xyz.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/analysis.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm10.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/tls creating build/bdist.linux-ppc64le/wheel/mmtbx/model copying build/lib/mmtbx/model/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/model copying build/lib/mmtbx/model/statistics.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/model copying build/lib/mmtbx/model/restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/model copying build/lib/mmtbx/model/model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/model copying build/lib/mmtbx/model/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/model copying build/lib/mmtbx/proq2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_entry_request.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_entry_request.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_web_services.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_web_services.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/wwpdb creating build/bdist.linux-ppc64le/wheel/mmtbx/probe copying build/lib/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/tst_mmtbx_probe_ext.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/AtomTypes.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/Helpers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/probe creating build/bdist.linux-ppc64le/wheel/mmtbx/den copying build/lib/mmtbx/den/refinement.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/den copying build/lib/mmtbx/den/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/den copying build/lib/mmtbx/den/plot_weights.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/den creating build/bdist.linux-ppc64le/wheel/mmtbx/disorder copying build/lib/mmtbx/disorder/analyze_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_analyze_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_backbone.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/backbone.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/disorder creating build/bdist.linux-ppc64le/wheel/mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_rotamer_eval.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/rotamer_eval.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/graphics.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/nqh.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/n_dim_table.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/sidechain_angles.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval_deprecated.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rotamer copying build/lib/mmtbx/pdb_distances.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_approx_zn.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/build.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_geometries.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_k.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_symmetry_axis.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_validate_ca.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_environment.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_mg.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/geometry.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions creating build/bdist.linux-ppc64le/wheel/mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_02.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/dump_sites.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_01.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/tst_pick_ca_svm.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_validate_mg.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/identify.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pickle.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/halides.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/environment.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_parameters.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ions creating build/bdist.linux-ppc64le/wheel/mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_03.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_01.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_04.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_00.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/pair_interaction.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_05.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_02.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pdbtools.py -> build/bdist.linux-ppc64le/wheel/./mmtbx copying build/lib/mmtbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/dynamics copying build/lib/mmtbx/dynamics/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/cartesian_dynamics.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/constants.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_sa.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/ensemble_cd.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_cartesian_dynamics.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/simulated_annealing.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/dynamics copying build/lib/mmtbx/invariant_domain.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/ligands copying build/lib/mmtbx/ligands/tst_ready_set_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/rdkit_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/hierarchy_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/electrons.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_electron_scripting.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_basics.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/chemistry.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/xtal_screens.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_xtal_screens.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ligands copying build/lib/mmtbx/xmanip_tasks.py -> build/bdist.linux-ppc64le/wheel/./mmtbx copying build/lib/mmtbx/process_predicted_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/ringer copying build/lib/mmtbx/ringer/tst_emringer.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rolling.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rscc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/emringer.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_scoring.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/tst_em_rscc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ringer copying build/lib/mmtbx/arrays.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/kinemage copying build/lib/mmtbx/kinemage/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/tst_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/ribbon_rendering.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/nrubs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/ribbons.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/kinemage creating build/bdist.linux-ppc64le/wheel/mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/c_beta.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/xtb_manager.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/external.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qi_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_interface.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_geo_file_parsing.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/orca_manager.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/mopac_manager.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/reference.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints creating build/bdist.linux-ppc64le/wheel/mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/base_qm_manager.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_ramachandran.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_replace_in_place.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/afitt.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_c_beta_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/geo_file_parsing.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/ramachandran.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_xtb_manager.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qm_manager.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_manager.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_restraints_manager.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry_restraints creating build/bdist.linux-ppc64le/wheel/mmtbx/polygon copying build/lib/mmtbx/polygon/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_polygon_data.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_gui.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/output.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/polygon creating build/bdist.linux-ppc64le/wheel/mmtbx/geometry copying build/lib/mmtbx/geometry/asa.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/topology.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/shared_types.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/sphere_surface_sampling.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/indexing.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/clash.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/altloc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/geometry copying build/lib/mmtbx/lattice.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/solvent copying build/lib/mmtbx/solvent/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/ordered_solvent.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/ensemble_ordered_solvent.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/map_to_water.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/solvent creating build/bdist.linux-ppc64le/wheel/mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_flat_nonuniform.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/kbu_refinery.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_mosaic.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/scaler.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/mosaic.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_scaler.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/f_model_all_scales.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_aniso_scaler.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/bulk_solvent creating build/bdist.linux-ppc64le/wheel/mmtbx/maps copying build/lib/mmtbx/maps/fobs_minus_fobs_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fem.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/map_model_cc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/correlation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/kick.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/composite_omit_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_correlation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/mtriage.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/superpose.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/polder.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/xtrapol8.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/maps copying build/lib/mmtbx/resolve_resources.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_search.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_restraints_group_list.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_params.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/cartesian_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/tncs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ligands.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ncs creating build/bdist.linux-ppc64le/wheel/mmtbx/suitename copying build/lib/mmtbx/suitename/dualparse.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninput.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitename.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitealyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenout.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/diangle.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenamedefs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/mainchain.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suites.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninit.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/transdent.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/suitename creating build/bdist.linux-ppc64le/wheel/mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/tst.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/atomic_environment_vectors creating build/bdist.linux-ppc64le/wheel/mmtbx/scaling copying build/lib/mmtbx/scaling/absence_likelihood.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_mean_f_rms_f.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_wilson.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/matthews.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absences.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_plots.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/remove_outliers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/ta_alpha_beta_calc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/thorough_outlier_test.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_bayesian_estimator.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pair_analyses.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/data_statistics.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_plan_sad_experiment.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pre_scale.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/make_param.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_sigmaa.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/massage_twin_detwin_data.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_outlier.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_scaling.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twin_analyses.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_absences.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/basic_analyses.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/mean_f_rms_f.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/plan_sad_experiment.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/fa_estimation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_massage_data.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/random_omit.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_rejection.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absolute_scaling.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/xtriage.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twmad_scale.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_scaling.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/sigmaa_estimation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage_twin_analyses.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/bayesian_estimator.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/scaling copying build/lib/mmtbx/real_space_correlation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/max_lik copying build/lib/mmtbx/max_lik/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_max_lik.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/maxlik.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_maxlik.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/max_like_non_uniform.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/max_lik creating build/bdist.linux-ppc64le/wheel/mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/tst.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/cif_parser.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/model_vs_data.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/density_modification copying build/lib/mmtbx/density_modification/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/density_modification copying build/lib/mmtbx/density_modification/tst_density_modification.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/density_modification copying build/lib/mmtbx/libtbx_refresh.py -> build/bdist.linux-ppc64le/wheel/./mmtbx copying build/lib/mmtbx/grow_density.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/nci copying build/lib/mmtbx/nci/hbond.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/skew_kurt_plot.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/data_filtering.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/tst_hbond.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/nci creating build/bdist.linux-ppc64le/wheel/mmtbx/utils copying build/lib/mmtbx/utils/rotatable_bonds.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/ntc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/grid2d.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/fab_elbow_angle.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/tst_switch_rotamers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/utils creating build/bdist.linux-ppc64le/wheel/mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conformation_dependent_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_server.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/mmtbx_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_selection.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/pdb_interpretation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_setup.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_triage.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_deuterium_terminii.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_types.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_paral_geo.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/geostd_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/correct_hydrogen_geometries.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/bondlength_defaults.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rotamer_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rotamer_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_all_cif_files.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_mixins.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_4.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conv_v2_v3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_user_supplied_library.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_superpose_ideal.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/hydrogen_restrictions.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_protein_interpretation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_triage.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_chg.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/server.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_dna_interpretation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_linking.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_coordination.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_types.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_5.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_correct_hydrogens.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_idealized_aa.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/idealized_aa.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_metal_coordination.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_carbo_linking.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_hand.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_neutron_distance.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_motif.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_chiral_values.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/monomer_library creating build/bdist.linux-ppc64le/wheel/mmtbx/real_space copying build/lib/mmtbx/real_space/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/real_space copying build/lib/mmtbx/real_space/tst.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/real_space copying build/lib/mmtbx/run_tests.py -> build/bdist.linux-ppc64le/wheel/./mmtbx copying build/lib/mmtbx/find_peaks.py -> build/bdist.linux-ppc64le/wheel/./mmtbx copying build/lib/mmtbx/restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/refinement copying build/lib/mmtbx/refinement/orca.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/select_best_starting_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement creating build/bdist.linux-ppc64le/wheel/mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/tst_rigid_body.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/data.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_anomalous_scatterer_groups.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/flip_peptide_side_chain.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/geometry_minimization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_monitor.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/refinement_flags.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/calculators.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/energy_monitor.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/inspect_tardy_trajectory.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/targets.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_misc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_select_best_starting_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/anomalous_scatterer_groups.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement creating build/bdist.linux-ppc64le/wheel/mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_4.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_water.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residues.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/weight.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_5.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_6.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_water.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_rigid_body.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0H.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/occupancy.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_4.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_selection.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/explode_and_refine.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1H.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/adp.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_monitor.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/individual_sites.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_7.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_weight.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residue.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_small_molecule.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_his.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/rigid_body.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1H.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_5.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_6.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/print_statistics.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/group.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_occupancy_selections.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights_params.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tardy.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/wrappers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_ncs_constraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_refinement_flags.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_real_space_simple.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/rigid_body.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/adp_refinement.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_fit_rotamers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/occupancies.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/refinement copying build/lib/mmtbx/f_model_info.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/sisa copying build/lib/mmtbx/sisa/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/sisa creating build/bdist.linux-ppc64le/wheel/mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_optimize.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_util.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_ga.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_masks.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_input.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_mtz.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/sisa/optimize creating build/bdist.linux-ppc64le/wheel/mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/regularize_from_pdb.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/proteins.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst_insertion_codes.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/find_ss_from_ca.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure creating build/bdist.linux-ppc64le/wheel/mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/ss_idealization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_io.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/tst_segid.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/secondary_structure_params.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/nucleic_acids.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/ss_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/secondary_structure creating build/bdist.linux-ppc64le/wheel/mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_esd.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_database.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mutli_residue.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/histidines.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hydrogen_bonding.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/LinkedResidues.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rdl_database.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/check_cdl_database.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/altloc_weighting.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_enol_peptide.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_svl_database.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_03.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/density_dependent_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rotamers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_omega_cdl.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_setup.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/bond_angle_registry.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hpdl_database.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/sf4_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/enol_peptide_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/nucleotides.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_hpdl.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_class.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/testing_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega_database.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/metal_coordination_library.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rdl.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_01.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_base_class.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_02.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/conformation_dependent_library creating build/bdist.linux-ppc64le/wheel/mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_coefficients.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_5.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_8.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_validate_H.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_7.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_10.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_8.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_6.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_5.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/validate_H.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_6.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/connectivity.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_4.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_connectivity.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/specialised_hydrogen_atoms.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/neutron_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_11.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_9.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_7.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_9.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_minimize.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_5.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/parameterization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/build_hydrogens.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_time.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/riding.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_4.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_const_dihedral.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/find.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_4.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/reduce_hydrogen.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_manager.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/hydrogens creating build/bdist.linux-ppc64le/wheel/mmtbx/reduce copying build/lib/mmtbx/reduce/Movers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/tst_mmtbx_reduce_ext.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/InteractionGraph.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/Optimizers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/reduce creating build/bdist.linux-ppc64le/wheel/mmtbx/validation copying build/lib/mmtbx/validation/convert_lists.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/experimental.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cablam.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/analyze_peptides.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cbetadev.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/holton_geometry_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comprehensive_residue.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cbd_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/datasets.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/chain_comparison.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/validate_ligands.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/graphics.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation creating build/bdist.linux-ppc64le/wheel/mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/convert_from_text.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/waters.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/fav_lists.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/model_properties.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/sequence.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/undowser.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation creating build/bdist.linux-ppc64le/wheel/mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/probescore_ligand.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_clashscore.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/mp_geo.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_mpscore.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/table_from_json.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/kinemage_templates.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/clashscore.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comparama.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_PRO_phi_psi.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mp_validate_bonds.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/undowser2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rna_validate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/barbed_wire_analysis.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rama_z.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ensembles.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/omegalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ligands.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rotalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/phi_psi_2_data.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_others_phi_psi.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation creating build/bdist.linux-ppc64le/wheel/mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_01.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/run_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_arguments.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_02.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze_rare.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rotalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev_02.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_model_properties.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_waters.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_suitename.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_do_flips_clashscore.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rna_validate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_experimental.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_validate_bonds.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_endtoend.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_find_region_max_value.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_4.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_5.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_symmetry_SS.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_omegalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_keep_hydrogens.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_chiral_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/ramalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/validation copying build/lib/mmtbx/map_tools.py -> build/bdist.linux-ppc64le/wheel/./mmtbx copying build/lib/mmtbx/superpose.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/twinning copying build/lib/mmtbx/twinning/probabalistic_detwinning.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/twin_f_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/twinning creating build/bdist.linux-ppc64le/wheel/mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/all_his.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/rotamer_manager.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/tst.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/sample_rotamers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/idealized_aa_residues creating build/bdist.linux-ppc64le/wheel/mmtbx/ias copying build/lib/mmtbx/ias/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ias copying build/lib/mmtbx/ias/tst_ias.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/ias creating build/bdist.linux-ppc64le/wheel/mmtbx/alignment copying build/lib/mmtbx/alignment/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/alignment creating build/bdist.linux-ppc64le/wheel/mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_flipping_his.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_arrows_on_plot.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_pdbtools.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression creating build/bdist.linux-ppc64le/wheel/mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_analysis.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_as_xyz.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_refinement_fft.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_get_t_scheme.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/tls creating build/bdist.linux-ppc64le/wheel/mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_cart_ref_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ramachandran.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ncs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_utils_merge_models.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_neutralize_scatterers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_get_vdw_radii.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_pairs_within.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_merge.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_mtrix.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_tors_ref_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_symmetry.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_dedeuterate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/tst_domains_from_pae.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_domains_from_pae_cif.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_and_dm.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_custom_bond.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_schrodinger_interface.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_box.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_lrv.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_special_term_at_end.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rigid_bond_test.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_clashes.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ringer.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_switch.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_prune_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_table.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geo_min_restraints_phil.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_multi_residue_class.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_misc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_arginine_geometry.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_timeout.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_apply_cif_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_refine_anomalous_substructure.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ncs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_table_one.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mtz2map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure_cif.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cis_trans_peptide_link.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_ccs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_loop_closure.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_holton_geometry_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_model_cc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression creating build/bdist.linux-ppc64le/wheel/mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search_flips.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/tst_geometry_minimization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rank_scale_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_sequence.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_probe.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_minimize_chain.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ligand_ncs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ss_validation_long_chainids.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb_cif.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cc_star.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_dynamics_cli.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_command_line_input.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rdkit_utils_fragmentation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_real_space_correlation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_cryoem_resolution.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_metal_link_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ml_estimate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_4.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_h_to_water.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_maps_misc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_type_registry.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_remediate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ribbons.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ordered_solvent.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_anomalous_substructure.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_superpose.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_alignment.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sequence_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_isomorphous_difference_misc.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_angle.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sampled_model_density.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_origin_ids.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_adp_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sort_hetatms.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_psi_phi_extraction.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_msa.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_type_parser.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validation_summary.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison_cif.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_chain_break.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_examples.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model_cif.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_no_cryst1.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_fd.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_3.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/make_fake_anomalous_data.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_statistics_output.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_models_to_from_chains.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/regression creating build/bdist.linux-ppc64le/wheel/mmtbx/rsr copying build/lib/mmtbx/rsr/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rsr copying build/lib/mmtbx/rsr/tst.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/rsr copying build/lib/mmtbx/xmanip.py -> build/bdist.linux-ppc64le/wheel/./mmtbx copying build/lib/mmtbx/clashes.py -> build/bdist.linux-ppc64le/wheel/./mmtbx copying build/lib/mmtbx/pdb_symmetry.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/command_line copying build/lib/mmtbx/command_line/probescore_ligand.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validation_summary.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_cablam_cache.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cc_star.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/sort_hetatms.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_aev.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fobs_minus_fobs_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/where_is_that_cif_file.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reciprocal_space_arrays.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mon_lib_cif_triage.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/chiral_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hbond.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/debug_riding.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/select_best_starting_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_model_distances.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_interpretation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/matthews.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/f000.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probe2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_atom_selection.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cbetadev.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_model_histogram.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/quantum_interface.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce_cryoem_resolution.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/holton_geometry_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/remove_outliers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_tls_groups.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdbtools.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer_score.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ss_idealization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/process_predicted_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/kinemage.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mtz2map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rigid_bond_test.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_comparison.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/altloc_remediate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_ligands.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_puckers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maps.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/geometry_minimization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cif_as_mtz.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/distance_difference.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_geo.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_structure_factors.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/refine_anomalous_substructure.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ligand_restraints_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/water_b_factors.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename_old.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_box.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/next_gen_residue_typing.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/angle.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_idealization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_correlation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/arginine_geometry.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rank_scale_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_sequence.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_data.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fake_f_obs.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fab_elbow_angle.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/taam_minus_iam.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/grow_density.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/nonbonded_overlaps.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/super.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/estimate_bijvoet_ratio.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mask.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/table_one.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/comparama.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_rotarama_cache.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prune_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/density_modification.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_validate_bonds.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/molprobity.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/r_factor_statistics.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fetch_pdb.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/electrons.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/verify_mon_lib_data.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_restraints.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam_idealization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_as_xyz.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/barbed_wire_analysis.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rama_z.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_suites.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_diff_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fmodel.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/apply_ncs_to_ligand.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/omegalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_fem.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prepare_pdb_deposition.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtriage.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ribbons.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rotalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/superpose.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_peaks_holes.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/polder.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/atom_valence_simple.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/massage_data.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/perigee.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ringer.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_analysis.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/show_r_factors_by_shell.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hydrogenate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_H_cl_app.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtrapol8.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/next_gen_atom_typing.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xmanip.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/search_pdb_symmetry.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/models_as_chains.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_bonds.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maximum_entropy_map.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ramalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_residue_in_pdb.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/dynamics.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/sisa.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/command_line creating build/bdist.linux-ppc64le/wheel/mmtbx/programs copying build/lib/mmtbx/programs/probescore_ligand.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_selection.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/chiral_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hbond.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/debug_riding.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fetch.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/matthews.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probe2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/emringer.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cbetadev.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/quantum_interface.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce_cryoem_resolution.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/holton_geometry_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdbtools.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_idealization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/process_predicted_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/validate_ligands.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_puckers.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ligand_restraints_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/water_b_factors.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename_old.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/next_gen_residue_typing.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/real_space_correlation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/arginine_geometry.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/model_vs_sequence.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/undowser.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/taam_minus_iam.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/nonbonded_overlaps.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mask.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/comparama.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mp_validate_bonds.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/undowser2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam_idealization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/barbed_wire_analysis.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rama_z.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_suites.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fmodel.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/omegalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/prepare_pdb_deposition.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdb_as_cif.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_validation.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ribbons.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rotalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/polder.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_valence_simple.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/elbow_services.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hydrogenate.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/xtrapol8.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/next_gen_atom_typing.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_bonds.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ramalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/programs copying build/lib/mmtbx/msa.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/mmtbx/building creating build/bdist.linux-ppc64le/wheel/mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/ccd.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/starting_conformations.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/utils.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/berkeley_ramalyze.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/extend_sidechains.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building copying build/lib/mmtbx/building/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building creating build/bdist.linux-ppc64le/wheel/mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/tst_00.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/lifi.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/tst_extend_sidechains.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building copying build/lib/mmtbx/building/tst_extend_sidechains_2.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building copying build/lib/mmtbx/building/cablam_idealization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building copying build/lib/mmtbx/building/merge_models.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building copying build/lib/mmtbx/building/minimize_chain.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building copying build/lib/mmtbx/building/loop_idealization.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/building creating build/bdist.linux-ppc64le/wheel/mmtbx/f_model copying build/lib/mmtbx/f_model/__init__.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/f_model.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/f_model_info.py -> build/bdist.linux-ppc64le/wheel/./mmtbx/f_model copying build/lib/mmtbx/domains_from_pae.py -> build/bdist.linux-ppc64le/wheel/./mmtbx creating build/bdist.linux-ppc64le/wheel/spotfinder creating build/bdist.linux-ppc64le/wheel/spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_client_push.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_utils.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/multipart_encoder.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_dials.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/adsc_client.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/general_client_example.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_bcsb.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_read_file.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/pilatus_client.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/specific_client_example.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_is_alive.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/bcsb_client_example.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_read_file.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/thin_client.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/servers copying build/lib/spotfinder/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder creating build/bdist.linux-ppc64le/wheel/spotfinder/applications copying build/lib/spotfinder/applications/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/practical_heuristics.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/stats_distl.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/image_viewer.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/signal_strength.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications creating build/bdist.linux-ppc64le/wheel/spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/method2_resolution.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice_nztt.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/spotreporter.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice2.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/wrappers.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications creating build/bdist.linux-ppc64le/wheel/spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/correction_vector_plot.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_run3.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_phil.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/applications/xfel creating build/bdist.linux-ppc64le/wheel/spotfinder/array_family copying build/lib/spotfinder/array_family/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/array_family copying build/lib/spotfinder/array_family/flex.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/array_family creating build/bdist.linux-ppc64le/wheel/spotfinder/diffraction copying build/lib/spotfinder/diffraction/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/geometry.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/imagefiles.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/diffraction copying build/lib/spotfinder/exception.py -> build/bdist.linux-ppc64le/wheel/./spotfinder copying build/lib/spotfinder/run_tests.py -> build/bdist.linux-ppc64le/wheel/./spotfinder creating build/bdist.linux-ppc64le/wheel/spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/practical_heuristics.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/dxtbx_toolbox creating build/bdist.linux-ppc64le/wheel/spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/close_spots_detail.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/core_toolbox creating build/bdist.linux-ppc64le/wheel/spotfinder/math_support copying build/lib/spotfinder/math_support/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/math_support copying build/lib/spotfinder/math_support/sphere_formulae.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/math_support creating build/bdist.linux-ppc64le/wheel/spotfinder/command_line copying build/lib/spotfinder/command_line/find_active_area.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/sweep_strength.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/__init__.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/mp_spotfinder_server_read_file.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/image_viewer.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/signal_strength.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/thin_client.py -> build/bdist.linux-ppc64le/wheel/./spotfinder/command_line running install_egg_info Copying cctbx.egg-info to build/bdist.linux-ppc64le/wheel/./cctbx-2023.12.egg-info running install_scripts creating build/bdist.linux-ppc64le/wheel/cctbx-2023.12.dist-info/WHEEL creating '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/.tmp-kh8cfdm8/cctbx-2023.12-py3-none-any.whl' and adding 'build/bdist.linux-ppc64le/wheel' to it adding 'annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/run_tests.py' adding 'annlib_adaptbx/annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/annlib_adaptbx/sample.py' adding 'annlib_adaptbx/annlib_adaptbx/self_match.py' adding 'annlib_adaptbx/source_generators/__init__.py' adding 'annlib_adaptbx/source_generators/generate_all.py' adding 'boost/__init__.py' adding 'boost/optional.py' adding 'boost/python.py' adding 'boost/rational.py' adding 'boost/std_pair.py' adding 'boost/tuple.py' adding 'boost_adaptbx/__init__.py' adding 'boost_adaptbx/hybrid_times.py' adding 'boost_adaptbx/libtbx_refresh.py' adding 'boost_adaptbx/run_tests.py' adding 'boost_adaptbx/boost/__init__.py' adding 'boost_adaptbx/boost/optional.py' adding 'boost_adaptbx/boost/python.py' adding 'boost_adaptbx/boost/rational.py' adding 'boost_adaptbx/boost/std_pair.py' adding 'boost_adaptbx/boost/tuple.py' adding 'boost_adaptbx/command_line/__init__.py' adding 'boost_adaptbx/command_line/divide_by_zero.py' adding 'boost_adaptbx/command_line/double_overflow.py' adding 'boost_adaptbx/command_line/gcd.py' adding 'boost_adaptbx/command_line/inexact.py' adding 'boost_adaptbx/command_line/int_overflow.py' adding 'boost_adaptbx/command_line/lcm.py' adding 'boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py' adding 'boost_adaptbx/command_line/segmentation_fault.py' adding 'boost_adaptbx/command_line/show_environ_usage.py' adding 'boost_adaptbx/command_line/show_platform_info.py' adding 'boost_adaptbx/graph/__init__.py' adding 'boost_adaptbx/graph/breadth_first_search.py' adding 'boost_adaptbx/graph/clustering_algorithm.py' adding 'boost_adaptbx/graph/connected_component_algorithm.py' adding 'boost_adaptbx/graph/graph_structure_comparison.py' adding 'boost_adaptbx/graph/maximum_clique.py' adding 'boost_adaptbx/graph/metric.py' adding 'boost_adaptbx/graph/min_cut_max_flow.py' adding 'boost_adaptbx/graph/minimum_cut_enumerate.py' adding 'boost_adaptbx/graph/utility.py' adding 'cbflib_adaptbx/__init__.py' adding 'cbflib_adaptbx/copy_files.py' adding 'cbflib_adaptbx/exercise_compression.py' adding 'cbflib_adaptbx/run_tests.py' adding 'cbflib_adaptbx/command_line/__init__.py' adding 'cbflib_adaptbx/command_line/dump.py' adding 'ccp4io_adaptbx/__init__.py' adding 'ccp4io_adaptbx/copy_files.py' adding 'ccp4io_adaptbx/tst.py' adding 'cctbx/__init__.py' adding 'cctbx/adptbx.py' adding 'cctbx/anharmonic.py' adding 'cctbx/crystal_orientation.py' adding 'cctbx/dmtbx.py' adding 'cctbx/euclidean_model_matching.py' adding 'cctbx/french_wilson.py' adding 'cctbx/libtbx_refresh.py' adding 'cctbx/math_module.py' adding 'cctbx/multipolar.py' adding 'cctbx/r_free_utils.py' adding 'cctbx/run_examples.py' adding 'cctbx/run_tests.py' adding 'cctbx/statistics.py' adding 'cctbx/symmetry_search.py' adding 'cctbx/translation_search.py' adding 'cctbx/adp_restraints/__init__.py' adding 'cctbx/adp_restraints/energies.py' adding 'cctbx/adp_restraints/flags.py' adding 'cctbx/adp_restraints/tst_ext.py' adding 'cctbx/array_family/__init__.py' adding 'cctbx/array_family/flex.py' adding 'cctbx/command_line/__init__.py' adding 'cctbx/command_line/auto_sharpen.py' adding 'cctbx/command_line/brehm_diederichs.py' adding 'cctbx/command_line/cctbx_test_nightly.py' adding 'cctbx/command_line/cod_select_and_pickle.py' adding 'cctbx/command_line/diffuse.py' adding 'cctbx/command_line/eltbx.show_fp_fdp.py' adding 'cctbx/command_line/euclidean_model_matching.py' adding 'cctbx/command_line/find_reticular_twin_laws.py' adding 'cctbx/command_line/form_factor_query.py' adding 'cctbx/command_line/precession_view.py' adding 'cctbx/command_line/qscore.py' adding 'cctbx/command_line/samosa_join.py' adding 'cctbx/command_line/samosa_scale.py' adding 'cctbx/command_line/segment_and_split_map.py' adding 'cctbx/command_line/space_group_info.py' adding 'cctbx/command_line/structure_factor_timings.py' adding 'cctbx/command_line/subgroups.py' adding 'cctbx/command_line/version.py' adding 'cctbx/command_line/wavelength_units.py' adding 'cctbx/covariance/__init__.py' adding 'cctbx/crystal/__init__.py' adding 'cctbx/crystal/burzlaff_zimmermann_dewolff.py' adding 'cctbx/crystal/close_packing.py' adding 'cctbx/crystal/coordination_sequences.py' adding 'cctbx/crystal/direct_space_asu.py' adding 'cctbx/crystal/distance_based_connectivity.py' adding 'cctbx/crystal/find_best_cell.py' adding 'cctbx/crystal/reindex.py' adding 'cctbx/crystal/super_cell.py' adding 'cctbx/crystal/tst_distance_based_connectivity.py' adding 'cctbx/crystal/tst_ext.py' adding 'cctbx/crystal/tst_super_cell.py' adding 'cctbx/development/__init__.py' adding 'cctbx/development/approx_amplitude_vs_resolution.py' adding 'cctbx/development/cns_density_modification.py' adding 'cctbx/development/create_models_or_maps.py' adding 'cctbx/development/debug_utils.py' adding 'cctbx/development/direct_or_fft.py' adding 'cctbx/development/electron_density_sampling.py' adding 'cctbx/development/fmt_utils.py' adding 'cctbx/development/github.py' adding 'cctbx/development/make_cns_input.py' adding 'cctbx/development/make_settings.py' adding 'cctbx/development/random_structure.py' adding 'cctbx/development/run_shelx.py' adding 'cctbx/development/run_shelx76.py' adding 'cctbx/development/space_group_option_parser.py' adding 'cctbx/development/structure_factor_utils.py' adding 'cctbx/development/tst_cns_epsilon.py' adding 'cctbx/development/tst_cns_hl.py' adding 'cctbx/eltbx/__init__.py' adding 'cctbx/eltbx/attenuation_coefficient.py' adding 'cctbx/eltbx/chemical_elements.py' adding 'cctbx/eltbx/covalent_radii.py' adding 'cctbx/eltbx/distance_based_connectivity.py' adding 'cctbx/eltbx/e_scattering.py' adding 'cctbx/eltbx/formula.py' adding 'cctbx/eltbx/fp_fdp.py' adding 'cctbx/eltbx/gaussian_fit.py' adding 'cctbx/eltbx/henke.py' adding 'cctbx/eltbx/icsd_radii.py' adding 'cctbx/eltbx/neutron.py' adding 'cctbx/eltbx/read_custom_scattering_dict.py' adding 'cctbx/eltbx/sasaki.py' adding 'cctbx/eltbx/tiny_pse.py' adding 'cctbx/eltbx/van_der_waals_radii.py' adding 'cctbx/eltbx/wavelengths.py' adding 'cctbx/eltbx/development/__init__.py' adding 'cctbx/eltbx/development/combine_fits.py' adding 'cctbx/eltbx/development/create_n_gaussian_raw_cpp.py' adding 'cctbx/eltbx/development/e_scattering_plots.py' adding 'cctbx/eltbx/development/format_gaussian_fits.py' adding 'cctbx/eltbx/development/hydrogen_plots.py' adding 'cctbx/eltbx/development/itvc_approx.py' adding 'cctbx/eltbx/development/itvc_cross_validation.py' adding 'cctbx/eltbx/development/itvc_fits.py' adding 'cctbx/eltbx/development/itvc_kissel.py' adding 'cctbx/eltbx/development/itvc_section61_io.py' adding 'cctbx/eltbx/development/kissel_fits.py' adding 'cctbx/eltbx/development/kissel_io.py' adding 'cctbx/eltbx/development/rez_rez_grant.py' adding 'cctbx/eltbx/xray_scattering/__init__.py' adding 'cctbx/examples/__init__.py' adding 'cctbx/examples/adp_symmetry_constraints.py' adding 'cctbx/examples/all_axes.py' adding 'cctbx/examples/analyze_adp.py' adding 'cctbx/examples/ccp4_map.py' adding 'cctbx/examples/change_hand_p31.py' adding 'cctbx/examples/convert_ccp4_symop_lib.py' adding 'cctbx/examples/cr2o3_consistency_checks.py' adding 'cctbx/examples/cr2o3_primitive_cell.py' adding 'cctbx/examples/exp_i_alpha_derivatives.py' adding 'cctbx/examples/f_model_example.py' adding 'cctbx/examples/fft_map_electron_density_around_atom.py' adding 'cctbx/examples/find_distances_using_cpp_objects.py' adding 'cctbx/examples/find_sys_abs_equiv_space_groups.py' adding 'cctbx/examples/g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/g_exp_i_partial_derivatives.py' adding 'cctbx/examples/getting_started.py' adding 'cctbx/examples/hirshfeld_test.py' adding 'cctbx/examples/le_page_1982_vs_lebedev_2005.py' adding 'cctbx/examples/lebedev_2005_perturbation.py' adding 'cctbx/examples/list_non_principal_continuous_shifts.py' adding 'cctbx/examples/location_part.py' adding 'cctbx/examples/map_skewness.py' adding 'cctbx/examples/maximum_subgroups.py' adding 'cctbx/examples/miller_common_sets.py' adding 'cctbx/examples/miller_transform.py' adding 'cctbx/examples/neutron_structure_factors.py' adding 'cctbx/examples/phase_o_phrenia.py' adding 'cctbx/examples/quartz_structure.py' adding 'cctbx/examples/random_f_calc.py' adding 'cctbx/examples/random_puckers.py' adding 'cctbx/examples/reduced_cell_two_folds.py' adding 'cctbx/examples/site_symmetry_constraints.py' adding 'cctbx/examples/site_symmetry_table.py' adding 'cctbx/examples/space_group_matrices.py' adding 'cctbx/examples/space_subgroups.py' adding 'cctbx/examples/steve_collins.py' adding 'cctbx/examples/structure_factor_derivatives.py' adding 'cctbx/examples/structure_factor_derivatives_2.py' adding 'cctbx/examples/structure_factor_derivatives_3.py' adding 'cctbx/examples/structure_factor_derivatives_4.py' adding 'cctbx/examples/sub_group_graph.py' adding 'cctbx/examples/symops_530.py' adding 'cctbx/examples/trigonal_r_vs_tetragonal_i.py' adding 'cctbx/examples/tst_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_phase_o_phrenia.py' adding 'cctbx/examples/tst_space_subgroups.py' adding 'cctbx/examples/tst_structure_factor_derivatives.py' adding 'cctbx/examples/tst_structure_factor_derivatives_2.py' adding 'cctbx/examples/tst_structure_factor_derivatives_3.py' adding 'cctbx/examples/tst_structure_factor_derivatives_4.py' adding 'cctbx/examples/unit_cell_minimizers.py' adding 'cctbx/examples/unit_cell_refinement.py' adding 'cctbx/examples/view_fft_map.py' adding 'cctbx/examples/merging/__init__.py' adding 'cctbx/examples/merging/data_subset.py' adding 'cctbx/examples/merging/data_utilities.py' adding 'cctbx/examples/merging/show_results.py' adding 'cctbx/examples/merging/sigma_correction.py' adding 'cctbx/examples/merging/task4.py' adding 'cctbx/examples/merging/test1.py' adding 'cctbx/examples/merging/test_cc_half.py' adding 'cctbx/examples/merging/test_levenberg_sparse.py' adding 'cctbx/examples/merging/tst_permutations.py' adding 'cctbx/examples/merging/samosa/__init__.py' adding 'cctbx/examples/merging/samosa/join.py' adding 'cctbx/examples/merging/samosa/per_lattice_postrefinement.py' adding 'cctbx/examples/merging/samosa/scale.py' adding 'cctbx/examples/structure_factor_calculus/__init__.py' adding 'cctbx/examples/structure_factor_calculus/site_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/u_star_derivatives.py' adding 'cctbx/geometry/__init__.py' adding 'cctbx/geometry_restraints/__init__.py' adding 'cctbx/geometry_restraints/auto_linking_types.py' adding 'cctbx/geometry_restraints/base_geometry.py' adding 'cctbx/geometry_restraints/distance_least_squares.py' adding 'cctbx/geometry_restraints/energies.py' adding 'cctbx/geometry_restraints/flags.py' adding 'cctbx/geometry_restraints/lbfgs.py' adding 'cctbx/geometry_restraints/linking_class.py' adding 'cctbx/geometry_restraints/manager.py' adding 'cctbx/geometry_restraints/process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/standard_cif_links.py' adding 'cctbx/geometry_restraints/tst_angle_derivs.py' adding 'cctbx/geometry_restraints/tst_ext.py' adding 'cctbx/geometry_restraints/tst_motif.py' adding 'cctbx/geometry_restraints/tst_process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/tst_proxy_registry.py' adding 'cctbx/macro_mol/__init__.py' adding 'cctbx/macro_mol/rotation_parameters.py' adding 'cctbx/maptbx/__init__.py' adding 'cctbx/maptbx/auto_sharpen.py' adding 'cctbx/maptbx/box.py' adding 'cctbx/maptbx/fsc_curve.py' adding 'cctbx/maptbx/map_symmetry.py' adding 'cctbx/maptbx/mask.py' adding 'cctbx/maptbx/mem.py' adding 'cctbx/maptbx/minimization.py' adding 'cctbx/maptbx/prepare_map_for_docking.py' adding 'cctbx/maptbx/prepare_map_for_refinement.py' adding 'cctbx/maptbx/qscore.py' adding 'cctbx/maptbx/real_space_refinement_simple.py' adding 'cctbx/maptbx/refine_scales_errors.py' adding 'cctbx/maptbx/refine_sharpening.py' adding 'cctbx/maptbx/resolution_from_map_and_model.py' adding 'cctbx/maptbx/segment_and_split_map.py' adding 'cctbx/maptbx/servalcat_difference_map.py' adding 'cctbx/maptbx/tst_MapPeakLocator.py' adding 'cctbx/maptbx/tst_asymmetric_map.py' adding 'cctbx/maptbx/tst_atom_curves.py' adding 'cctbx/maptbx/tst_atom_radius_as_central_peak_width.py' adding 'cctbx/maptbx/tst_bcr.py' adding 'cctbx/maptbx/tst_ccp.py' adding 'cctbx/maptbx/tst_get_percentile_cutoffs.py' adding 'cctbx/maptbx/tst_interpolation.py' adding 'cctbx/maptbx/tst_interpolation_2.py' adding 'cctbx/maptbx/tst_loft.py' adding 'cctbx/maptbx/tst_map_peak_3d_as_2d.py' adding 'cctbx/maptbx/tst_mask.py' adding 'cctbx/maptbx/tst_peak_volume_estimate.py' adding 'cctbx/maptbx/tst_qscore.py' adding 'cctbx/maptbx/tst_real_space_refinement_simple.py' adding 'cctbx/maptbx/tst_resolution_from_map_and_model.py' adding 'cctbx/maptbx/tst_target_and_gradients.py' adding 'cctbx/maptbx/bcr/__init__.py' adding 'cctbx/maptbx/bcr/bcr.py' adding 'cctbx/maptbx/bcr/compute_tables.py' adding 'cctbx/maptbx/bcr/qmap.py' adding 'cctbx/maptbx/bcr/tst_adp_refine.py' adding 'cctbx/maptbx/bcr/tst_example.py' adding 'cctbx/maptbx/bcr/tst_qmap_02.py' adding 'cctbx/maptbx/bcr/tst_table.py' adding 'cctbx/maptbx/bcr/tst_two_atoms.py' adding 'cctbx/maptbx/bcr/tst_vrm.py' adding 'cctbx/maptbx/bcr/tst_vrm2.py' adding 'cctbx/masks/__init__.py' adding 'cctbx/merging/__init__.py' adding 'cctbx/merging/brehm_diederichs.py' adding 'cctbx/miller/__init__.py' adding 'cctbx/miller/display.py' adding 'cctbx/miller/reindexing.py' adding 'cctbx/miller/tst_map_to_asu_isym.py' adding 'cctbx/miller/tst_reindexing.py' adding 'cctbx/neutron/__init__.py' adding 'cctbx/omz/__init__.py' adding 'cctbx/omz/bfgs.py' adding 'cctbx/omz/cif_refine.py' adding 'cctbx/omz/cod_refine.py' adding 'cctbx/omz/cod_select_and_pickle.py' adding 'cctbx/omz/dev.py' adding 'cctbx/omz/eval_iso_vs_refined.py' adding 'cctbx/omz/pdb_dev.py' adding 'cctbx/omz/tardy_adaptor.py' adding 'cctbx/omz/tst_bfgs.py' adding 'cctbx/omz/tst_dev.py' adding 'cctbx/regression/__init__.py' adding 'cctbx/regression/tst_adp_aniso_restraints.py' adding 'cctbx/regression/tst_adp_constraints.py' adding 'cctbx/regression/tst_adp_constraints_cartesian.py' adding 'cctbx/regression/tst_amplitude_normalisation.py' adding 'cctbx/regression/tst_change_basis.py' adding 'cctbx/regression/tst_connectivity.py' adding 'cctbx/regression/tst_connectivity_allsym.py' adding 'cctbx/regression/tst_coordination_sequences.py' adding 'cctbx/regression/tst_create_models_or_maps.py' adding 'cctbx/regression/tst_crystal.py' adding 'cctbx/regression/tst_crystal_asu_clusters.py' adding 'cctbx/regression/tst_crystal_close_packing.py' adding 'cctbx/regression/tst_diffuse.py' adding 'cctbx/regression/tst_direct_scaling.py' adding 'cctbx/regression/tst_direct_space_asu.py' adding 'cctbx/regression/tst_emma.py' adding 'cctbx/regression/tst_expand_to_p1.py' adding 'cctbx/regression/tst_f_model.py' adding 'cctbx/regression/tst_fast_nv1995.py' adding 'cctbx/regression/tst_fcalc_fft_stability.py' adding 'cctbx/regression/tst_find_best_cell.py' adding 'cctbx/regression/tst_fourier_transform_real_part_at_x.py' adding 'cctbx/regression/tst_french_wilson.py' adding 'cctbx/regression/tst_geometry_restraints.py' adding 'cctbx/regression/tst_geometry_restraints_2.py' adding 'cctbx/regression/tst_geometry_restraints_lbfgs.py' adding 'cctbx/regression/tst_grm_modifications.py' adding 'cctbx/regression/tst_grm_modifications_rm.py' adding 'cctbx/regression/tst_grm_pickling.py' adding 'cctbx/regression/tst_grouped_data.py' adding 'cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py' adding 'cctbx/regression/tst_krivy_gruber.py' adding 'cctbx/regression/tst_loc_res.py' adding 'cctbx/regression/tst_map_is_periodic.py' adding 'cctbx/regression/tst_map_weights_for_symmetry_summation.py' adding 'cctbx/regression/tst_maptbx_box.py' adding 'cctbx/regression/tst_maptbx_mask.py' adding 'cctbx/regression/tst_maptbx_structure_factors.py' adding 'cctbx/regression/tst_math_module.py' adding 'cctbx/regression/tst_mem.py' adding 'cctbx/regression/tst_mem_2.py' adding 'cctbx/regression/tst_miller.py' adding 'cctbx/regression/tst_miller_data_manipulation.py' adding 'cctbx/regression/tst_miller_double_step_filtration.py' adding 'cctbx/regression/tst_miller_fft_map.py' adding 'cctbx/regression/tst_miller_lookup_utils.py' adding 'cctbx/regression/tst_miller_merge_equivalents.py' adding 'cctbx/regression/tst_miller_statistics.py' adding 'cctbx/regression/tst_niggli_reduction_cpp.py' adding 'cctbx/regression/tst_pair_asu_table.py' adding 'cctbx/regression/tst_pointgroup_tools.py' adding 'cctbx/regression/tst_prepare_map_for_docking.py' adding 'cctbx/regression/tst_r_free_utils.py' adding 'cctbx/regression/tst_reciprocal_space_asu.py' adding 'cctbx/regression/tst_refine_xray_curvs.py' adding 'cctbx/regression/tst_reflection_statistics.py' adding 'cctbx/regression/tst_sampled_model_density.py' adding 'cctbx/regression/tst_sf_low_res_accuracy.py' adding 'cctbx/regression/tst_sgtbx.py' adding 'cctbx/regression/tst_sgtbx_denominators.py' adding 'cctbx/regression/tst_sgtbx_harker.py' adding 'cctbx/regression/tst_sgtbx_lattice_symmetry.py' adding 'cctbx/regression/tst_sgtbx_site_constraints.py' adding 'cctbx/regression/tst_sgtbx_special_op_simplifier.py' adding 'cctbx/regression/tst_sgtbx_subgroups.py' adding 'cctbx/regression/tst_sgtbx_tidy_pickling.py' adding 'cctbx/regression/tst_show_cosets.py' adding 'cctbx/regression/tst_space_group_type_tidy_cb_op_t.py' adding 'cctbx/regression/tst_sphericity.py' adding 'cctbx/regression/tst_statistics_graphs.py' adding 'cctbx/regression/tst_triplet_generator.py' adding 'cctbx/regression/tst_twin_target.py' adding 'cctbx/regression/tst_wavelength_units.py' adding 'cctbx/regression/tst_web_change_basis.py' adding 'cctbx/regression/tst_weighting_schemes.py' adding 'cctbx/regression/tst_wilson_plot.py' adding 'cctbx/regression/tst_xray.py' adding 'cctbx/regression/tst_xray_derivatives.py' adding 'cctbx/regression/tst_xray_fast_gradients.py' adding 'cctbx/regression/tst_xray_minimization.py' adding 'cctbx/regression/tst_xray_minimization_failure.py' adding 'cctbx/regression/tst_xray_target_functors.py' adding 'cctbx/sgtbx/__init__.py' adding 'cctbx/sgtbx/bravais_types.py' adding 'cctbx/sgtbx/cosets.py' adding 'cctbx/sgtbx/harker.py' adding 'cctbx/sgtbx/lattice_symmetry.py' adding 'cctbx/sgtbx/literal_description.py' adding 'cctbx/sgtbx/plane_groups.py' adding 'cctbx/sgtbx/pointgroup_tools.py' adding 'cctbx/sgtbx/rational_matrices_point_groups.py' adding 'cctbx/sgtbx/reticular_pg_tools.py' adding 'cctbx/sgtbx/reticular_twin_laws.py' adding 'cctbx/sgtbx/show_cosets.py' adding 'cctbx/sgtbx/sub_lattice_tools.py' adding 'cctbx/sgtbx/subgroups.py' adding 'cctbx/sgtbx/symbol_confidence.py' adding 'cctbx/sgtbx/sys_abs_equiv.py' adding 'cctbx/sgtbx/direct_space_asu/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/check_redundancies.py' adding 'cctbx/sgtbx/direct_space_asu/cut_plane.py' adding 'cctbx/sgtbx/direct_space_asu/facet_analysis.py' adding 'cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/short_cuts.py' adding 'cctbx/sgtbx/direct_space_asu/proto/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py' adding 'cctbx/sgtbx/direct_space_asu/proto/tst_asu.py' adding 'cctbx/source_generators/__init__.py' adding 'cctbx/source_generators/flex_fwd_h.py' adding 'cctbx/source_generators/eltbx/__init__.py' adding 'cctbx/source_generators/eltbx/generate_henke_cpp.py' adding 'cctbx/source_generators/eltbx/generate_sasaki_cpp.py' adding 'cctbx/uctbx/__init__.py' adding 'cctbx/uctbx/gruber_1973.py' adding 'cctbx/uctbx/gruber_1973_table_1.py' adding 'cctbx/uctbx/krivy_gruber_1976.py' adding 'cctbx/uctbx/reduction_base.py' adding 'cctbx/uctbx/determine_unit_cell/__init__.py' adding 'cctbx/web/__init__.py' adding 'cctbx/web/all_axes.py' adding 'cctbx/web/browse_settings.py' adding 'cctbx/web/cgi_utils.py' adding 'cctbx/web/change_basis.py' adding 'cctbx/web/change_hand.py' adding 'cctbx/web/change_setting.py' adding 'cctbx/web/dispatcher.py' adding 'cctbx/web/emma.py' adding 'cctbx/web/explore_symmetry.py' adding 'cctbx/web/frac_cart.py' adding 'cctbx/web/io_utils.py' adding 'cctbx/web/iotbx_cif_validate.py' adding 'cctbx/web/lattice_symmetry.py' adding 'cctbx/web/libtbx_help.py' adding 'cctbx/web/multiple_cell.py' adding 'cctbx/web/phase_o_phrenia.py' adding 'cctbx/web/replay.py' adding 'cctbx/web/shelx.py' adding 'cctbx/web/structure_factors.py' adding 'cctbx/web/structure_factors_pdb.py' adding 'cctbx/web/wyckoff.py' adding 'cctbx/web/asu_gallery/__init__.py' adding 'cctbx/web/asu_gallery/guide_to_notation.py' adding 'cctbx/web/asu_gallery/jv_asu.py' adding 'cctbx/web/asu_gallery/jv_index.py' adding 'cctbx/web/asu_gallery/jvx.py' adding 'cctbx/web/asu_gallery/web_links.py' adding 'cctbx/xray/__init__.py' adding 'cctbx/xray/ext.py' adding 'cctbx/xray/minimization.py' adding 'cctbx/xray/observation_types.py' adding 'cctbx/xray/scatterer.py' adding 'cctbx/xray/structure.py' adding 'cctbx/xray/target_functors.py' adding 'cctbx/xray/weighting_schemes.py' adding 'cctbx/xray/observations/__init__.py' adding 'cctbx/xray/observations/tst_observations.py' adding 'cctbx/xray/structure_factors/__init__.py' adding 'cctbx/xray/structure_factors/algorithm.py' adding 'cctbx/xray/structure_factors/from_scatterers.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct_parallel.py' adding 'cctbx/xray/structure_factors/from_scatterers_fft.py' adding 'cctbx/xray/structure_factors/global_counters.py' adding 'cctbx/xray/structure_factors/gradient_flags.py' adding 'cctbx/xray/structure_factors/gradients.py' adding 'cctbx/xray/structure_factors/gradients_base.py' adding 'cctbx/xray/structure_factors/gradients_direct.py' adding 'cctbx/xray/structure_factors/gradients_fft.py' adding 'cctbx/xray/structure_factors/manager.py' adding 'cctbx/xray/structure_factors/misc.py' adding 'cctbx/xray/targets/__init__.py' adding 'cctbx/xray/targets/r1.py' adding 'cctbx/xray/targets/tst_r1.py' adding 'cctbx/xray/targets/tst_shelxl_wght_ls.py' adding 'cctbx-2023.12.dist-info/licenses/LICENSE.txt' adding 'cctbx_website/__init__.py' adding 'cctbx_website/libtbx_refresh.py' adding 'cctbx_website/run_tests.py' adding 'cctbx_website/command_line/__init__.py' adding 'cctbx_website/command_line/comment_to_docstring.py' adding 'cctbx_website/command_line/edit_for_boost.py' adding 'cctbx_website/command_line/edit_html.py' adding 'cctbx_website/command_line/extract_script_from_html_cctbx_doc.py' adding 'cctbx_website/command_line/run_pdoc_cctbx_api.py' adding 'cctbx_website/command_line/tst_comment_to_docstring.py' adding 'cctbx_website/regression/__init__.py' adding 'cctbx_website/regression/exercise.py' adding 'cctbx_website/regression/tst_10_doc_programming_tips_1.py' adding 'cctbx_website/regression/tst_11_script_1.py' adding 'cctbx_website/regression/tst_12_script_compare_ss.py' adding 'cctbx_website/regression/tst_13_script_ideal_ss.py' adding 'cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py' adding 'cctbx_website/regression/tst_15_doc_models_hierarchy.py' adding 'cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py' adding 'cctbx_website/regression/tst_17_script_rfactors.py' adding 'cctbx_website/regression/tst_18_doc_programming_tips_2.py' adding 'cctbx_website/regression/tst_19_doc_programming_tips_3.py' adding 'cctbx_website/regression/tst_1_template.py' adding 'cctbx_website/regression/tst_2_doc_hlo_intro.py' adding 'cctbx_website/regression/tst_3_doc_hlo_model_manager.py' adding 'cctbx_website/regression/tst_4_doc_hlo_data_manager.py' adding 'cctbx_website/regression/tst_5_doc_hlo_map_manager.py' adding 'cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py' adding 'cctbx_website/regression/tst_7_doc_low_flex_advanced.py' adding 'cctbx_website/regression/tst_8_doc_maps_intro.py' adding 'cctbx_website/regression/tst_9_doc_maps_boxing.py' adding 'cctbx_website/regression/tst_py_from_html.py' adding 'cma_es/__init__.py' adding 'cma_es/cma_es_interface.py' adding 'cma_es/run_tests.py' adding 'cma_es/tst_cma_es.py' adding 'cootbx/__init__.py' adding 'cootbx/hydrogens_button.py' adding 'cootbx/interactive_edit.py' adding 'cootbx/ligand_checklist.py' adding 'cootbx/simple_zoom_list.py' adding 'cootbx/validation_lists.py' adding 'cootbx/view_refinement.py' adding 'cootbx/watch_file.py' adding 'cootbx/xmlrpc_server.py' adding 'fable/__init__.py' adding 'fable/cout.py' adding 'fable/equivalence.py' adding 'fable/intrinsics.py' adding 'fable/read.py' adding 'fable/run_tests.py' adding 'fable/simple_compilation.py' adding 'fable/tokenization.py' adding 'fable/tst_cout.py' adding 'fable/tst_cout_compile.py' adding 'fable/tst_equivalence.py' adding 'fable/tst_ext.py' adding 'fable/tst_read.py' adding 'fable/utils.py' adding 'fable/command_line/__init__.py' adding 'fable/command_line/cout.py' adding 'fable/command_line/fem_include_search_paths.py' adding 'fable/command_line/insert_write_at_start_of_each_procedure.py' adding 'fable/command_line/read.py' adding 'fable/command_line/show_calls.py' adding 'fable/command_line/split.py' adding 'fast_linalg/__init__.py' adding 'fftw3tbx/__init__.py' adding 'fftw3tbx/libtbx_refresh.py' adding 'fftw3tbx/tst_ext.py' adding 'gltbx/__init__.py' adding 'gltbx/extract_opengl_specs.py' adding 'gltbx/fonts.py' adding 'gltbx/generate_defines_bpl.py' adding 'gltbx/generate_fonts_ucs_cpp.py' adding 'gltbx/generate_functions_bpl.py' adding 'gltbx/gl.py' adding 'gltbx/gl_managed.py' adding 'gltbx/glu.py' adding 'gltbx/images.py' adding 'gltbx/libtbx_refresh.py' adding 'gltbx/quadrics.py' adding 'gltbx/run_tests.py' adding 'gltbx/tst.py' adding 'gltbx/tst_ellipsoids.py' adding 'gltbx/tst_fonts.py' adding 'gltbx/tst_viewer_utils.py' adding 'gltbx/util.py' adding 'gltbx/viewer_utils.py' adding 'gltbx/wx_cube.py' adding 'gltbx/wx_ellipsoids_test.py' adding 'gltbx/wx_motion_on_tab.py' adding 'gltbx/wx_scene.py' adding 'gltbx/wx_viewer.py' adding 'gltbx/wx_viewer_example.py' adding 'gltbx/wx_viewer_leapmotion.py' adding 'gltbx/wx_viewers_images.py' adding 'gltbx/command_line/__init__.py' adding 'gltbx/command_line/try_imports.py' adding 'iotbx/__init__.py' adding 'iotbx/builders.py' adding 'iotbx/builders_depending_on_smtbx.py' adding 'iotbx/cif_mtz_data_labels.py' adding 'iotbx/cli_parser.py' adding 'iotbx/crystal_symmetry_from_any.py' adding 'iotbx/csv_utils.py' adding 'iotbx/data_plots.py' adding 'iotbx/extract_xtal_data.py' adding 'iotbx/file_reader.py' adding 'iotbx/format.py' adding 'iotbx/libtbx_refresh.py' adding 'iotbx/logfiles.py' adding 'iotbx/map_manager.py' adding 'iotbx/map_model_manager.py' adding 'iotbx/map_tools.py' adding 'iotbx/merging_statistics.py' adding 'iotbx/mtrix_biomt.py' adding 'iotbx/option_parser.py' adding 'iotbx/phases.py' adding 'iotbx/phil.py' adding 'iotbx/poscar.py' adding 'iotbx/pymol.py' adding 'iotbx/ranges.py' adding 'iotbx/reflection_file_converter.py' adding 'iotbx/reflection_file_editor.py' adding 'iotbx/reflection_file_reader.py' adding 'iotbx/reflection_file_utils.py' adding 'iotbx/run_tests.py' adding 'iotbx/simple_parser.py' adding 'iotbx/symmetry.py' adding 'iotbx/table_one.py' adding 'iotbx/wildcard.py' adding 'iotbx/PrettyPrint/__init__.py' adding 'iotbx/PrettyPrint/tables.py' adding 'iotbx/bioinformatics/__init__.py' adding 'iotbx/bioinformatics/alignment_as_hsearch.py' adding 'iotbx/bioinformatics/ebi_wu_blast_xml.py' adding 'iotbx/bioinformatics/homologues.py' adding 'iotbx/bioinformatics/local_blast.py' adding 'iotbx/bioinformatics/ncbi_blast_xml.py' adding 'iotbx/bioinformatics/pdb_info.py' adding 'iotbx/bioinformatics/pubmed.py' adding 'iotbx/bioinformatics/structure.py' adding 'iotbx/bioinformatics/xmlbuild.py' adding 'iotbx/ccp4_map/__init__.py' adding 'iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/ccp4_map/tst.py' adding 'iotbx/cif/__init__.py' adding 'iotbx/cif/builders.py' adding 'iotbx/cif/citations.py' adding 'iotbx/cif/cod_tools.py' adding 'iotbx/cif/crystal_symmetry_from_cif.py' adding 'iotbx/cif/errors.py' adding 'iotbx/cif/geometry.py' adding 'iotbx/cif/model.py' adding 'iotbx/cif/restraint_file_merge.py' adding 'iotbx/cif/restraints.py' adding 'iotbx/cif/validation.py' adding 'iotbx/cns/__init__.py' adding 'iotbx/cns/crystal_symmetry_from_inp.py' adding 'iotbx/cns/crystal_symmetry_from_sdb.py' adding 'iotbx/cns/crystal_symmetry_utils.py' adding 'iotbx/cns/index_fobs_sigma_reader.py' adding 'iotbx/cns/miller_array.py' adding 'iotbx/cns/pdb_remarks.py' adding 'iotbx/cns/reflection_reader.py' adding 'iotbx/cns/sdb_reader.py' adding 'iotbx/cns/sdb_writer.py' adding 'iotbx/cns/space_group_symbols.py' adding 'iotbx/cns/tst_cns.py' adding 'iotbx/cns/xray_structure.py' adding 'iotbx/command_line/__init__.py' adding 'iotbx/command_line/biomt_reconstruction.py' adding 'iotbx/command_line/blast_pdb.py' adding 'iotbx/command_line/build_phil_cache.py' adding 'iotbx/command_line/cbf_read.py' adding 'iotbx/command_line/cif.as_miller_arrays.py' adding 'iotbx/command_line/cif.as_xray_structure.py' adding 'iotbx/command_line/cif.validate.py' adding 'iotbx/command_line/cif_as_pdb.py' adding 'iotbx/command_line/cns.reflection_reader.py' adding 'iotbx/command_line/cns.sdb_reader.py' adding 'iotbx/command_line/cns.transfer_crystal_symmetry.py' adding 'iotbx/command_line/cns_as_mtz.py' adding 'iotbx/command_line/crystal_symmetry_from_any.py' adding 'iotbx/command_line/csv_as_mtz.py' adding 'iotbx/command_line/dano_as_amplitudes.py' adding 'iotbx/command_line/detector_image_as_png.py' adding 'iotbx/command_line/distance_least_squares.py' adding 'iotbx/command_line/dtrek.to_cns.py' adding 'iotbx/command_line/effective_resolution.py' adding 'iotbx/command_line/emma.py' adding 'iotbx/command_line/explore_metric_symmetry.py' adding 'iotbx/command_line/export_scalepack_unmerged.py' adding 'iotbx/command_line/file_reader.py' adding 'iotbx/command_line/flip_symmetric_amino_acids.py' adding 'iotbx/command_line/french_wilson.py' adding 'iotbx/command_line/get_pubmed_citation.py' adding 'iotbx/command_line/lattice_symmetry.py' adding 'iotbx/command_line/merging_statistics.py' adding 'iotbx/command_line/mtrix_reconstruction.py' adding 'iotbx/command_line/mtz.dump.py' adding 'iotbx/command_line/mtz_as_cif.py' adding 'iotbx/command_line/patterson_map.py' adding 'iotbx/command_line/pdb.as_xray_structure.py' adding 'iotbx/command_line/pdb.b_factor_stats.py' adding 'iotbx/command_line/pdb.box_around_molecule.py' adding 'iotbx/command_line/pdb.hierarchy.py' adding 'iotbx/command_line/pdb.insert_scale_records.py' adding 'iotbx/command_line/pdb.join_fragment_files.py' adding 'iotbx/command_line/pdb.link_as_geometry_restraints_edits.py' adding 'iotbx/command_line/pdb.print_sequence.py' adding 'iotbx/command_line/pdb.superpose_atoms_by_name.py' adding 'iotbx/command_line/pdb.superpose_centers_of_mass.py' adding 'iotbx/command_line/pdb_add_conformations.py' adding 'iotbx/command_line/pdb_as_cif.py' adding 'iotbx/command_line/pdb_as_fasta.py' adding 'iotbx/command_line/pdb_cif_conversion.py' adding 'iotbx/command_line/pdb_get_citation.py' adding 'iotbx/command_line/pdb_labels_comparison.py' adding 'iotbx/command_line/pdb_labels_diff.py' adding 'iotbx/command_line/pdb_remediator.py' adding 'iotbx/command_line/pdb_show_connectivity.py' adding 'iotbx/command_line/pdb_split_models.py' adding 'iotbx/command_line/phil.py' adding 'iotbx/command_line/poscar_as_xray_structure.py' adding 'iotbx/command_line/r_free_flags_accumulation.py' adding 'iotbx/command_line/r_free_flags_as_cns.py' adding 'iotbx/command_line/r_free_flags_completion_simple.py' adding 'iotbx/command_line/reflection_file_converter.py' adding 'iotbx/command_line/reflection_file_editor.py' adding 'iotbx/command_line/reflection_file_reader.py' adding 'iotbx/command_line/reflection_statistics.py' adding 'iotbx/command_line/reindex.py' adding 'iotbx/command_line/shelx.as_cif.py' adding 'iotbx/command_line/shelx.as_xray_structure.py' adding 'iotbx/command_line/shelx.dump_as_python.py' adding 'iotbx/command_line/show_distances.py' adding 'iotbx/command_line/show_systematic_absences.py' adding 'iotbx/command_line/simple_map_coefficients.py' adding 'iotbx/command_line/sort_atoms.py' adding 'iotbx/command_line/split_data_cif.py' adding 'iotbx/command_line/symmetry_search.py' adding 'iotbx/command_line/unique_with_biomt.py' adding 'iotbx/command_line/xplor.map.show_summary.py' adding 'iotbx/data_manager/__init__.py' adding 'iotbx/data_manager/common.py' adding 'iotbx/data_manager/json.py' adding 'iotbx/data_manager/map_coefficients.py' adding 'iotbx/data_manager/miller_array.py' adding 'iotbx/data_manager/model.py' adding 'iotbx/data_manager/ncs_spec.py' adding 'iotbx/data_manager/phil.py' adding 'iotbx/data_manager/real_map.py' adding 'iotbx/data_manager/restraint.py' adding 'iotbx/data_manager/sequence.py' adding 'iotbx/data_manager/yaml.py' adding 'iotbx/detectors/__init__.py' adding 'iotbx/detectors/active_area_filter.py' adding 'iotbx/detectors/adsc.py' adding 'iotbx/detectors/adsc_minicbf.py' adding 'iotbx/detectors/adsc_module.py' adding 'iotbx/detectors/beam_center_convention.py' adding 'iotbx/detectors/bruker.py' adding 'iotbx/detectors/cbf.py' adding 'iotbx/detectors/cspad_detector_formats.py' adding 'iotbx/detectors/detectorbase.py' adding 'iotbx/detectors/dtrek.py' adding 'iotbx/detectors/edf.py' adding 'iotbx/detectors/eiger.py' adding 'iotbx/detectors/eiger_minicbf.py' adding 'iotbx/detectors/generic_detector.py' adding 'iotbx/detectors/hamamatsu.py' adding 'iotbx/detectors/image_from_http_request.py' adding 'iotbx/detectors/macscience.py' adding 'iotbx/detectors/mar.py' adding 'iotbx/detectors/marIP.py' adding 'iotbx/detectors/noir.py' adding 'iotbx/detectors/npy.py' adding 'iotbx/detectors/pilatus_minicbf.py' adding 'iotbx/detectors/pilatus_slice.py' adding 'iotbx/detectors/raxis.py' adding 'iotbx/detectors/raxis_nonsquare.py' adding 'iotbx/detectors/raxisbase.py' adding 'iotbx/detectors/saturn.py' adding 'iotbx/detectors/test_mar.py' adding 'iotbx/detectors/test_raxis2.py' adding 'iotbx/detectors/tst_adsc.py' adding 'iotbx/detectors/tst_cbf_comp_read_meth.py' adding 'iotbx/detectors/tst_debug_write.py' adding 'iotbx/detectors/tst_detectors.py' adding 'iotbx/detectors/tst_py_cbf.py' adding 'iotbx/detectors/url_support.py' adding 'iotbx/detectors/context/__init__.py' adding 'iotbx/detectors/context/camera_convention.py' adding 'iotbx/detectors/context/config_detector.py' adding 'iotbx/detectors/context/endstation.py' adding 'iotbx/detectors/context/endstation_max_iv_trial.py' adding 'iotbx/detectors/context/spot_xy_convention.py' adding 'iotbx/detectors/util/__init__.py' adding 'iotbx/detectors/util/filters.py' adding 'iotbx/dsn6/__init__.py' adding 'iotbx/dsn6/tst.py' adding 'iotbx/dtrek/__init__.py' adding 'iotbx/dtrek/crystal_symmetry_from_ref.py' adding 'iotbx/dtrek/dtrek_symmetry_dict.py' adding 'iotbx/dtrek/reflnlist_reader.py' adding 'iotbx/examples/__init__.py' adding 'iotbx/examples/direct_methods_light.py' adding 'iotbx/examples/libtbx_phil_examples.py' adding 'iotbx/examples/mtz_convert_free_to_work.py' adding 'iotbx/examples/mtz_free_flipper.py' adding 'iotbx/examples/pdb_hierarchy.py' adding 'iotbx/examples/pdb_shake.py' adding 'iotbx/examples/pdb_split_chains.py' adding 'iotbx/examples/pdb_symmetry_copies.py' adding 'iotbx/examples/pdb_tardy_conf_sampling_simple.py' adding 'iotbx/examples/pdb_to_map_simple.py' adding 'iotbx/examples/pdbx_mmcif_tutorial.py' adding 'iotbx/examples/prepare_model_for_rsr.py' adding 'iotbx/examples/recalculate_phenix_refine_r_factors.py' adding 'iotbx/examples/shelx_latt_sym_to_space_group_symbol.py' adding 'iotbx/examples/tst_mtz_free_flipper.py' adding 'iotbx/examples/pdb_truncate_to_ala/__init__.py' adding 'iotbx/examples/pdb_truncate_to_ala/tst.py' adding 'iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py' adding 'iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py' adding 'iotbx/examples/pdb_truncate_to_ala/v2_simple.py' adding 'iotbx/examples/pdb_truncate_to_ala/v3_better.py' adding 'iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py' adding 'iotbx/file_io/__init__.py' adding 'iotbx/file_io/_maps.py' adding 'iotbx/file_io/detection.py' adding 'iotbx/file_io/reader.py' adding 'iotbx/file_io/text_detection.py' adding 'iotbx/fullprof/__init__.py' adding 'iotbx/fullprof/read_pcr.py' adding 'iotbx/fullprof/write_pcr.py' adding 'iotbx/gui_tools/__init__.py' adding 'iotbx/gui_tools/cif_conversions.py' adding 'iotbx/gui_tools/import_data_and_flags.py' adding 'iotbx/gui_tools/models.py' adding 'iotbx/gui_tools/reflections.py' adding 'iotbx/gui_tools/tst.py' adding 'iotbx/kriber/__init__.py' adding 'iotbx/kriber/strudat.py' adding 'iotbx/kriber/tst_strudat.py' adding 'iotbx/mrcfile/__init__.py' adding 'iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/mtz/__init__.py' adding 'iotbx/mtz/crystal_symmetry_from_mtz.py' adding 'iotbx/mtz/extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst.py' adding 'iotbx/mtz/tst_dano.py' adding 'iotbx/mtz/tst_ext.py' adding 'iotbx/mtz/tst_extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst_miller_dict.py' adding 'iotbx/mtz/tst_unmerged.py' adding 'iotbx/ncs/__init__.py' adding 'iotbx/pdb/__init__.py' adding 'iotbx/pdb/aa_utils.py' adding 'iotbx/pdb/amino_acid_codes.py' adding 'iotbx/pdb/atom_name_interpretation.py' adding 'iotbx/pdb/atom_selection.py' adding 'iotbx/pdb/cryst1_interpretation.py' adding 'iotbx/pdb/crystal_symmetry_from_pdb.py' adding 'iotbx/pdb/download.py' adding 'iotbx/pdb/experiment_type.py' adding 'iotbx/pdb/extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/fetch.py' adding 'iotbx/pdb/forward_compatible_pdb_cif_conversion.py' adding 'iotbx/pdb/hierarchy.py' adding 'iotbx/pdb/hybrid_36.py' adding 'iotbx/pdb/misc_records_output.py' adding 'iotbx/pdb/mmcif.py' adding 'iotbx/pdb/modified_aa_names.py' adding 'iotbx/pdb/modified_rna_dna_names.py' adding 'iotbx/pdb/nucleic_acid_codes.py' adding 'iotbx/pdb/pdb_v3_cif_conversion.py' adding 'iotbx/pdb/pdbe.py' adding 'iotbx/pdb/rcsb.py' adding 'iotbx/pdb/records.py' adding 'iotbx/pdb/remark_290_interpretation.py' adding 'iotbx/pdb/remark_2_interpretation.py' adding 'iotbx/pdb/remark_3_interpretation.py' adding 'iotbx/pdb/rna_dna_detection.py' adding 'iotbx/pdb/secondary_structure.py' adding 'iotbx/pdb/tst_atom_name_interpretation.py' adding 'iotbx/pdb/tst_atom_selection.py' adding 'iotbx/pdb/tst_atom_selection_string.py' adding 'iotbx/pdb/tst_ext.py' adding 'iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/tst_hierarchy.py' adding 'iotbx/pdb/tst_hierarchy_atom_sort.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric_2.py' adding 'iotbx/pdb/tst_input_pickling.py' adding 'iotbx/pdb/tst_mmcif.py' adding 'iotbx/pdb/tst_mmcif_hierarchy.py' adding 'iotbx/pdb/tst_mmcif_hierarchy_2.py' adding 'iotbx/pdb/tst_pdb.py' adding 'iotbx/pdb/tst_read_mtrix_records_from_cif.py' adding 'iotbx/pdb/tst_rna_dna_atom_names.py' adding 'iotbx/pdb/tst_secondary_structure.py' adding 'iotbx/pdb/tst_secondary_structure_2.py' adding 'iotbx/pdb/tst_tls.py' adding 'iotbx/pdb/tst_utils.py' adding 'iotbx/pdb/utils.py' adding 'iotbx/pdb/web_service_api.py' adding 'iotbx/pdb/xray_structure.py' adding 'iotbx/pdb/remediation/__init__.py' adding 'iotbx/pdb/remediation/remediator.py' adding 'iotbx/pdb/remediation/tst_remediator.py' adding 'iotbx/programs/__init__.py' adding 'iotbx/programs/box_around_molecule.py' adding 'iotbx/programs/split_data_cif.py' adding 'iotbx/programs/unique_with_biomt.py' adding 'iotbx/regression/__init__.py' adding 'iotbx/regression/tst_add_conformations.py' adding 'iotbx/regression/tst_all_chain_ids.py' adding 'iotbx/regression/tst_atom_selections_10k.py' adding 'iotbx/regression/tst_bioinformatics.py' adding 'iotbx/regression/tst_box_around_molecule.py' adding 'iotbx/regression/tst_cif_1.py' adding 'iotbx/regression/tst_cif_as_pdb_1atom.py' adding 'iotbx/regression/tst_cli_parser.py' adding 'iotbx/regression/tst_crystal_symmetry_from_any.py' adding 'iotbx/regression/tst_csv_utils.py' adding 'iotbx/regression/tst_data_manager.py' adding 'iotbx/regression/tst_data_plots.py' adding 'iotbx/regression/tst_examples.py' adding 'iotbx/regression/tst_export_scalepack_unmerged.py' adding 'iotbx/regression/tst_extract_xtal_data.py' adding 'iotbx/regression/tst_fetch.py' adding 'iotbx/regression/tst_file_io.py' adding 'iotbx/regression/tst_file_reader.py' adding 'iotbx/regression/tst_generate_n_char_string.py' adding 'iotbx/regression/tst_group_rounding.py' adding 'iotbx/regression/tst_hierarchy_altlocs.py' adding 'iotbx/regression/tst_hierarchy_copy_select.py' adding 'iotbx/regression/tst_hierarchy_forward_compatible_pdb.py' adding 'iotbx/regression/tst_hierarchy_id_str.py' adding 'iotbx/regression/tst_hierarchy_long_chain_ids_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_2.py' adding 'iotbx/regression/tst_hierarchy_long_resname_3.py' adding 'iotbx/regression/tst_hierarchy_long_resname_4.py' adding 'iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py' adding 'iotbx/regression/tst_hierarchy_occupancies_rounding.py' adding 'iotbx/regression/tst_hierarchy_pdb_v3.py' adding 'iotbx/regression/tst_lattice_symmetry.py' adding 'iotbx/regression/tst_map_manager.py' adding 'iotbx/regression/tst_map_manager_2.py' adding 'iotbx/regression/tst_map_manager_wrapping.py' adding 'iotbx/regression/tst_map_model_manager.py' adding 'iotbx/regression/tst_map_model_manager_2.py' adding 'iotbx/regression/tst_map_model_manager_3.py' adding 'iotbx/regression/tst_map_model_manager_4.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py' adding 'iotbx/regression/tst_map_model_manager_call_consistency.py' adding 'iotbx/regression/tst_map_model_manager_cif.py' adding 'iotbx/regression/tst_map_model_manager_external_sharpening_7.py' adding 'iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py' adding 'iotbx/regression/tst_map_model_manager_local_resolution_10.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py' adding 'iotbx/regression/tst_map_model_manager_tls_from_map_8.py' adding 'iotbx/regression/tst_map_tools.py' adding 'iotbx/regression/tst_merging_statistics.py' adding 'iotbx/regression/tst_miller_sort_asu.py' adding 'iotbx/regression/tst_mmcif_input.py' adding 'iotbx/regression/tst_mmcif_multimodel.py' adding 'iotbx/regression/tst_mmcif_segids.py' adding 'iotbx/regression/tst_mmcif_to_from_hierarchy.py' adding 'iotbx/regression/tst_mrc_io.py' adding 'iotbx/regression/tst_mtz_as_cif.py' adding 'iotbx/regression/tst_patterson.py' adding 'iotbx/regression/tst_pdb_as_cif.py' adding 'iotbx/regression/tst_pdb_as_fasta.py' adding 'iotbx/regression/tst_pdb_cif_cells.py' adding 'iotbx/regression/tst_pdb_cif_inputs.py' adding 'iotbx/regression/tst_pdb_link_records.py' adding 'iotbx/regression/tst_pdbx_mmcif_tutorial.py' adding 'iotbx/regression/tst_phases.py' adding 'iotbx/regression/tst_phil.py' adding 'iotbx/regression/tst_poscar.py' adding 'iotbx/regression/tst_reflection_file_editor.py' adding 'iotbx/regression/tst_reflection_file_reader.py' adding 'iotbx/regression/tst_reflection_file_utils.py' adding 'iotbx/regression/tst_reflection_statistics.py' adding 'iotbx/regression/tst_reindex.py' adding 'iotbx/regression/tst_restraints_merge.py' adding 'iotbx/regression/tst_selected_hierarchy_flip.py' adding 'iotbx/regression/tst_show_systematic_absences.py' adding 'iotbx/regression/tst_simple_map_coefficients.py' adding 'iotbx/regression/tst_simple_parser.py' adding 'iotbx/regression/tst_sort_atoms.py' adding 'iotbx/regression/tst_split_data_cif.py' adding 'iotbx/regression/tst_split_models.py' adding 'iotbx/regression/tst_symmetry.py' adding 'iotbx/regression/tst_text_detection.py' adding 'iotbx/regression/tst_wildcard.py' adding 'iotbx/regression/tst_xray_scale.py' adding 'iotbx/regression/utils.py' adding 'iotbx/regression/ncs/__init__.py' adding 'iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py' adding 'iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py' adding 'iotbx/regression/ncs/tst_ncs.py' adding 'iotbx/regression/ncs/tst_ncs_groups_preprocessing.py' adding 'iotbx/regression/ncs/tst_ncs_input.py' adding 'iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py' adding 'iotbx/regression/ncs/tst_ncs_reordered_chains.py' adding 'iotbx/regression/ncs/tst_ncs_search_broken_chain.py' adding 'iotbx/regression/ncs/tst_ncs_search_ligs.py' adding 'iotbx/regression/ncs/tst_ncs_search_shortcut_1.py' adding 'iotbx/regression/ncs/tst_ncs_user_selections.py' adding 'iotbx/regression/ncs/tst_ncs_without_validation.py' adding 'iotbx/scalepack/__init__.py' adding 'iotbx/scalepack/crystal_symmetry_from_hkl.py' adding 'iotbx/scalepack/merge.py' adding 'iotbx/scalepack/no_merge_original_index.py' adding 'iotbx/scalepack/space_group_dictionary.py' adding 'iotbx/scalepack/tst_merge.py' adding 'iotbx/scalepack/tst_no_merge_original_index.py' adding 'iotbx/shelx/__init__.py' adding 'iotbx/shelx/crystal_symmetry_from_ins.py' adding 'iotbx/shelx/errors.py' adding 'iotbx/shelx/fcf.py' adding 'iotbx/shelx/fvar_encoding.py' adding 'iotbx/shelx/hklf.py' adding 'iotbx/shelx/lexer.py' adding 'iotbx/shelx/parsers.py' adding 'iotbx/shelx/tokens.py' adding 'iotbx/shelx/tst_fvar_encoding.py' adding 'iotbx/shelx/tst_hklf.py' adding 'iotbx/shelx/tst_lex_parse_build.py' adding 'iotbx/shelx/tst_writer.py' adding 'iotbx/shelx/write_ins.py' adding 'iotbx/shelx/writer.py' adding 'iotbx/solve/__init__.py' adding 'iotbx/solve/crystal_symmetry_from_inp.py' adding 'iotbx/solve/fpfm_reader.py' adding 'iotbx/xds/__init__.py' adding 'iotbx/xds/blank_cbf.py' adding 'iotbx/xds/correction.py' adding 'iotbx/xds/crystal_symmetry_from_hkl.py' adding 'iotbx/xds/gain_cbf.py' adding 'iotbx/xds/geometry.py' adding 'iotbx/xds/integrate_hkl.py' adding 'iotbx/xds/read_ascii.py' adding 'iotbx/xds/spot_xds.py' adding 'iotbx/xds/xds_cbf.py' adding 'iotbx/xds/xds_inp.py' adding 'iotbx/xds/xparm.py' adding 'iotbx/xplor/__init__.py' adding 'iotbx/xplor/crystal_symmetry_from_map.py' adding 'iotbx/xplor/ext.py' adding 'iotbx/xplor/map.py' adding 'iotbx/xplor/tst_xplormap.py' adding 'libtbx/__init__.py' adding 'libtbx/assert_utils.py' adding 'libtbx/binary_search.py' adding 'libtbx/callbacks.py' adding 'libtbx/citations.py' adding 'libtbx/clear_paths.py' adding 'libtbx/cli.py' adding 'libtbx/cluster.py' adding 'libtbx/clusterTests.py' adding 'libtbx/code_analysis.py' adding 'libtbx/complex_math.py' adding 'libtbx/configure.py' adding 'libtbx/console_utils.py' adding 'libtbx/containers.py' adding 'libtbx/cpp_function_name.py' adding 'libtbx/crossmingw.py' adding 'libtbx/dlite.py' adding 'libtbx/easy_mp.py' adding 'libtbx/easy_pickle.py' adding 'libtbx/easy_profile.py' adding 'libtbx/easy_run.py' adding 'libtbx/env_config.py' adding 'libtbx/file_clutter.py' adding 'libtbx/find_reference_cycles.py' adding 'libtbx/forward_compatibility.py' adding 'libtbx/introspection.py' adding 'libtbx/libtbx_refresh.py' adding 'libtbx/load_env.py' adding 'libtbx/log.py' adding 'libtbx/math_utils.py' adding 'libtbx/metric_prefixes.py' adding 'libtbx/mpi4py.py' adding 'libtbx/object_oriented_patterns.py' adding 'libtbx/objgraph.py' adding 'libtbx/option_parser.py' adding 'libtbx/path.py' adding 'libtbx/pkg_utils.py' adding 'libtbx/program_template.py' adding 'libtbx/progress.py' adding 'libtbx/pyframe.py' adding 'libtbx/pyplot.py' adding 'libtbx/python_code_parsing.py' adding 'libtbx/resource_monitor.py' adding 'libtbx/run_tests.py' adding 'libtbx/runtime_utils.py' adding 'libtbx/simplexml.py' adding 'libtbx/smart_open.py' adding 'libtbx/start_print_trace.py' adding 'libtbx/str_utils.py' adding 'libtbx/subprocess_with_fixes.py' adding 'libtbx/table_utils.py' adding 'libtbx/thread_utils.py' adding 'libtbx/topological_sort.py' adding 'libtbx/try_hello_world_c.py' adding 'libtbx/tst_add_docstrings_with_ai.py' adding 'libtbx/tst_binary_search.py' adding 'libtbx/tst_citation_encoding.py' adding 'libtbx/tst_citations.py' adding 'libtbx/tst_conda_dispatcher.py' adding 'libtbx/tst_containers.py' adding 'libtbx/tst_dlite.py' adding 'libtbx/tst_easy_mp.py' adding 'libtbx/tst_easy_mp_multicore.py' adding 'libtbx/tst_easy_mp_state.py' adding 'libtbx/tst_easy_pickle.py' adding 'libtbx/tst_find_unused_imports.py' adding 'libtbx/tst_fully_buffered_timeout.py' adding 'libtbx/tst_mahalanobis.py' adding 'libtbx/tst_math_utils.py' adding 'libtbx/tst_object_oriented_patterns.py' adding 'libtbx/tst_path.py' adding 'libtbx/tst_program_template.py' adding 'libtbx/tst_python_code_parsing.py' adding 'libtbx/tst_representation.py' adding 'libtbx/tst_run_tests_parallel_retry.py' adding 'libtbx/tst_run_tests_parallel_unique_dirs.py' adding 'libtbx/tst_runtime_utils.py' adding 'libtbx/tst_scheduling.py' adding 'libtbx/tst_str_utils.py' adding 'libtbx/tst_thread_utils.py' adding 'libtbx/tst_topological_sort.py' adding 'libtbx/tst_utils.py' adding 'libtbx/tst_version.py' adding 'libtbx/tst_word_index_generator.py' adding 'libtbx/tst_xmlrpc_utils.py' adding 'libtbx/utils.py' adding 'libtbx/version.py' adding 'libtbx/wingide.py' adding 'libtbx/word_index_generator.py' adding 'libtbx/xmlrpc_server_example.py' adding 'libtbx/xmlrpc_utils.py' adding 'libtbx/auto_build/__init__.py' adding 'libtbx/auto_build/bootstrap.py' adding 'libtbx/auto_build/create_cctbx_bundle_for_installer.py' adding 'libtbx/auto_build/create_installer.py' adding 'libtbx/auto_build/create_mac_app.py' adding 'libtbx/auto_build/create_mac_pkg.py' adding 'libtbx/auto_build/create_windows_exe.py' adding 'libtbx/auto_build/create_windows_installer.py' adding 'libtbx/auto_build/install_base_packages.py' adding 'libtbx/auto_build/install_conda.py' adding 'libtbx/auto_build/install_distribution.py' adding 'libtbx/auto_build/installer_utils.py' adding 'libtbx/auto_build/make_bundle.py' adding 'libtbx/auto_build/package_defs.py' adding 'libtbx/auto_build/plus_installer.py' adding 'libtbx/auto_build/regenerate_module_files.py' adding 'libtbx/auto_build/rpath.py' adding 'libtbx/auto_build/setup_installer.py' adding 'libtbx/auto_build/write_gui_dispatcher_include.py' adding 'libtbx/bundle/__init__.py' adding 'libtbx/bundle/copy_all.py' adding 'libtbx/bundle/copy_build_libtbx.py' adding 'libtbx/bundle/copy_runtime_sources.py' adding 'libtbx/bundle/install_bat.py' adding 'libtbx/bundle/install_csh.py' adding 'libtbx/bundle/utils.py' adding 'libtbx/command_line/__init__.py' adding 'libtbx/command_line/add_docstrings_with_ai.py' adding 'libtbx/command_line/analyse_code_comments.py' adding 'libtbx/command_line/any2unix.py' adding 'libtbx/command_line/assert_line_count.py' adding 'libtbx/command_line/assert_not_show_diff.py' adding 'libtbx/command_line/assert_stdin.py' adding 'libtbx/command_line/assert_stdin_contains_strings.py' adding 'libtbx/command_line/assert_stdin_ends_with.py' adding 'libtbx/command_line/bootstrap.py' adding 'libtbx/command_line/bundle_as_exe.py' adding 'libtbx/command_line/cctbx_chunk.py' adding 'libtbx/command_line/check_libcpp.py' adding 'libtbx/command_line/clean_clutter.py' adding 'libtbx/command_line/clear_paths.py' adding 'libtbx/command_line/create_cctbx_bundle_for_installer.py' adding 'libtbx/command_line/create_install_script_bat.py' adding 'libtbx/command_line/create_installer.py' adding 'libtbx/command_line/create_mac_app.py' adding 'libtbx/command_line/create_selfx.py' adding 'libtbx/command_line/create_unzipsfx.py' adding 'libtbx/command_line/create_windows_exe.py' adding 'libtbx/command_line/dtrace.py' adding 'libtbx/command_line/easy_qsub.py' adding 'libtbx/command_line/env_run.py' adding 'libtbx/command_line/epydoc_run.py' adding 'libtbx/command_line/extract_code_from_txt.py' adding 'libtbx/command_line/find_clutter.py' adding 'libtbx/command_line/find_files.py' adding 'libtbx/command_line/find_in_repositories.py' adding 'libtbx/command_line/find_old_style_classes.py' adding 'libtbx/command_line/find_pdb_mmcif_problems.py' adding 'libtbx/command_line/find_reserved_names.py' adding 'libtbx/command_line/find_under_build.py' adding 'libtbx/command_line/find_untested.py' adding 'libtbx/command_line/find_unused_imports.py' adding 'libtbx/command_line/find_unused_imports_crude.py' adding 'libtbx/command_line/git_avoid_merges.py' adding 'libtbx/command_line/help.py' adding 'libtbx/command_line/import_all_ext.py' adding 'libtbx/command_line/import_all_python.py' adding 'libtbx/command_line/install.py' adding 'libtbx/command_line/install_conda.py' adding 'libtbx/command_line/ipython_shell_start.py' adding 'libtbx/command_line/line_count.py' adding 'libtbx/command_line/list_files.py' adding 'libtbx/command_line/list_modules.py' adding 'libtbx/command_line/list_source_files_sorted_by_size.py' adding 'libtbx/command_line/make_dist.py' adding 'libtbx/command_line/make_sphinx_html.py' adding 'libtbx/command_line/nequal.py' adding 'libtbx/command_line/parallel_simple.py' adding 'libtbx/command_line/path_utility.py' adding 'libtbx/command_line/phil.py' adding 'libtbx/command_line/prime_factors_of.py' adding 'libtbx/command_line/printenv.py' adding 'libtbx/command_line/py_compile_all.py' adding 'libtbx/command_line/raise_exception_for_testing.py' adding 'libtbx/command_line/reindent.py' adding 'libtbx/command_line/remote_processing.py' adding 'libtbx/command_line/remove_tree.py' adding 'libtbx/command_line/remove_unused_imports.py' adding 'libtbx/command_line/resource_monitor_plot.py' adding 'libtbx/command_line/run_pickled_function.py' adding 'libtbx/command_line/run_tests_parallel.py' adding 'libtbx/command_line/scons.py' adding 'libtbx/command_line/seconds_since_the_epoch.py' adding 'libtbx/command_line/sge_available_slots.py' adding 'libtbx/command_line/sge_qstat_counts.py' adding 'libtbx/command_line/show_all_on_path.py' adding 'libtbx/command_line/show_bin_path.py' adding 'libtbx/command_line/show_build_options.py' adding 'libtbx/command_line/show_build_path.py' adding 'libtbx/command_line/show_but_no_repr.py' adding 'libtbx/command_line/show_commands.py' adding 'libtbx/command_line/show_date_and_time.py' adding 'libtbx/command_line/show_dist_paths.py' adding 'libtbx/command_line/show_env.py' adding 'libtbx/command_line/show_environ_usage.py' adding 'libtbx/command_line/show_full_command_path.py' adding 'libtbx/command_line/show_host_and_user.py' adding 'libtbx/command_line/show_include_paths.py' adding 'libtbx/command_line/show_lib_path.py' adding 'libtbx/command_line/show_module_dependencies.py' adding 'libtbx/command_line/show_number_of_processors.py' adding 'libtbx/command_line/show_numeric_version.py' adding 'libtbx/command_line/show_numpy_version.py' adding 'libtbx/command_line/show_python_dependencies.py' adding 'libtbx/command_line/show_python_sys_executable.py' adding 'libtbx/command_line/show_pythonpath.py' adding 'libtbx/command_line/show_repository_paths.py' adding 'libtbx/command_line/show_tests.py' adding 'libtbx/command_line/show_variable_names.py' adding 'libtbx/command_line/sphinx_build.py' adding 'libtbx/command_line/start_binary_bundle.py' adding 'libtbx/command_line/start_process.py' adding 'libtbx/command_line/wait_for_file.py' adding 'libtbx/development/__init__.py' adding 'libtbx/development/except_Exception.py' adding 'libtbx/development/timers.py' adding 'libtbx/development/xcode_build_phase.py' adding 'libtbx/langchain/__init__.py' adding 'libtbx/langchain/phenix_knowledge.py' adding 'libtbx/langchain/run_build_db.py' adding 'libtbx/langchain/run_inspect_db.py' adding 'libtbx/langchain/run_query_docs.py' adding 'libtbx/langchain/agent/__init__.py' adding 'libtbx/langchain/agent/advice_preprocessor.py' adding 'libtbx/langchain/agent/api_client.py' adding 'libtbx/langchain/agent/best_files_tracker.py' adding 'libtbx/langchain/agent/command_builder.py' adding 'libtbx/langchain/agent/command_postprocessor.py' adding 'libtbx/langchain/agent/config_loader.py' adding 'libtbx/langchain/agent/contract.py' adding 'libtbx/langchain/agent/directive_extractor.py' adding 'libtbx/langchain/agent/directive_validator.py' adding 'libtbx/langchain/agent/display_data_model.py' adding 'libtbx/langchain/agent/docs_tools.py' adding 'libtbx/langchain/agent/dry_run_manager.py' adding 'libtbx/langchain/agent/error_analyzer.py' adding 'libtbx/langchain/agent/error_classifier.py' adding 'libtbx/langchain/agent/event_formatter.py' adding 'libtbx/langchain/agent/event_log.py' adding 'libtbx/langchain/agent/failure_diagnoser.py' adding 'libtbx/langchain/agent/file_metadata.py' adding 'libtbx/langchain/agent/file_utils.py' adding 'libtbx/langchain/agent/format_validation.py' adding 'libtbx/langchain/agent/gate_evaluator.py' adding 'libtbx/langchain/agent/generate_logic_doc.py' adding 'libtbx/langchain/agent/generate_safety_docs.py' adding 'libtbx/langchain/agent/graph.py' adding 'libtbx/langchain/agent/graph_nodes.py' adding 'libtbx/langchain/agent/graph_state.py' adding 'libtbx/langchain/agent/hypothesis_evaluator.py' adding 'libtbx/langchain/agent/intent_classifier.py' adding 'libtbx/langchain/agent/kb_tags.py' adding 'libtbx/langchain/agent/log_section_extractor.py' adding 'libtbx/langchain/agent/memory.py' adding 'libtbx/langchain/agent/metric_evaluator.py' adding 'libtbx/langchain/agent/metrics_analyzer.py' adding 'libtbx/langchain/agent/mtz_inspector.py' adding 'libtbx/langchain/agent/nl_to_phil.py' adding 'libtbx/langchain/agent/pattern_manager.py' adding 'libtbx/langchain/agent/perceive_checks.py' adding 'libtbx/langchain/agent/phenix_utils.py' adding 'libtbx/langchain/agent/phil_validator.py' adding 'libtbx/langchain/agent/placement_checker.py' adding 'libtbx/langchain/agent/plan_generator.py' adding 'libtbx/langchain/agent/planner.py' adding 'libtbx/langchain/agent/program_registry.py' adding 'libtbx/langchain/agent/program_validator.py' adding 'libtbx/langchain/agent/rate_limit_handler.py' adding 'libtbx/langchain/agent/raw_advice_scanner.py' adding 'libtbx/langchain/agent/rules_selector.py' adding 'libtbx/langchain/agent/sanity_checker.py' adding 'libtbx/langchain/agent/session.py' adding 'libtbx/langchain/agent/session_tools.py' adding 'libtbx/langchain/agent/strategy_memory.py' adding 'libtbx/langchain/agent/structure_model.py' adding 'libtbx/langchain/agent/template_builder.py' adding 'libtbx/langchain/agent/thinking_agent.py' adding 'libtbx/langchain/agent/transport.py' adding 'libtbx/langchain/agent/tst_agent_enhancements.py' adding 'libtbx/langchain/agent/utils.py' adding 'libtbx/langchain/agent/validation_history.py' adding 'libtbx/langchain/agent/validation_inspector.py' adding 'libtbx/langchain/agent/workflow_engine.py' adding 'libtbx/langchain/agent/workflow_state.py' adding 'libtbx/langchain/agent/yaml_tools.py' adding 'libtbx/langchain/analysis/__init__.py' adding 'libtbx/langchain/analysis/agent_session_analyzer.py' adding 'libtbx/langchain/analysis/analyzer.py' adding 'libtbx/langchain/analysis/log_info.py' adding 'libtbx/langchain/analysis/state_extractor.py' adding 'libtbx/langchain/analysis/summarizer.py' adding 'libtbx/langchain/commands/__init__.py' adding 'libtbx/langchain/commands/base.py' adding 'libtbx/langchain/core/__init__.py' adding 'libtbx/langchain/core/_build_info.py' adding 'libtbx/langchain/core/_version.py' adding 'libtbx/langchain/core/llm.py' adding 'libtbx/langchain/core/types.py' adding 'libtbx/langchain/examples/__init__.py' adding 'libtbx/langchain/knowledge/__init__.py' adding 'libtbx/langchain/knowledge/api_schema.py' adding 'libtbx/langchain/knowledge/explanation_prompts.py' adding 'libtbx/langchain/knowledge/html_report_template.py' adding 'libtbx/langchain/knowledge/kb_loader.py' adding 'libtbx/langchain/knowledge/metric_patterns.py' adding 'libtbx/langchain/knowledge/phenix_programs.py' adding 'libtbx/langchain/knowledge/plan_schema.py' adding 'libtbx/langchain/knowledge/plan_template_loader.py' adding 'libtbx/langchain/knowledge/program_registration.py' adding 'libtbx/langchain/knowledge/prompts.py' adding 'libtbx/langchain/knowledge/prompts_hybrid.py' adding 'libtbx/langchain/knowledge/summary_display.py' adding 'libtbx/langchain/knowledge/thinking_prompts.py' adding 'libtbx/langchain/knowledge/yaml_loader.py' adding 'libtbx/langchain/rag/__init__.py' adding 'libtbx/langchain/rag/_chroma_resilience.py' adding 'libtbx/langchain/rag/document_loader.py' adding 'libtbx/langchain/rag/retriever.py' adding 'libtbx/langchain/rag/vector_store.py' adding 'libtbx/langchain/strategies/__init__.py' adding 'libtbx/langchain/strategies/base.py' adding 'libtbx/langchain/tests/__init__.py' adding 'libtbx/langchain/tests/analyze_tutorial_runs.py' adding 'libtbx/langchain/tests/audit_phase_rename.py' adding 'libtbx/langchain/tests/canary_utils.py' adding 'libtbx/langchain/tests/run_all_tests.py' adding 'libtbx/langchain/tests/test_api_keys.py' adding 'libtbx/langchain/tests/tst_abort_message_all_stops.py' adding 'libtbx/langchain/tests/tst_action_item_1.py' adding 'libtbx/langchain/tests/tst_advice_preprocessing.py' adding 'libtbx/langchain/tests/tst_after_program_fill_from_raw.py' adding 'libtbx/langchain/tests/tst_after_program_prompt.py' adding 'libtbx/langchain/tests/tst_agent_build_info.py' adding 'libtbx/langchain/tests/tst_api_schema.py' adding 'libtbx/langchain/tests/tst_audit_fixes.py' adding 'libtbx/langchain/tests/tst_autobuild_hl_recovery.py' adding 'libtbx/langchain/tests/tst_autobuild_sequence_waiver.py' adding 'libtbx/langchain/tests/tst_autosol_bugs.py' adding 'libtbx/langchain/tests/tst_backward_compat.py' adding 'libtbx/langchain/tests/tst_best_files_tracker.py' adding 'libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py' adding 'libtbx/langchain/tests/tst_canary.py' adding 'libtbx/langchain/tests/tst_cc_key_extraction.py' adding 'libtbx/langchain/tests/tst_classify_mtz_type_001.py' adding 'libtbx/langchain/tests/tst_command_builder.py' adding 'libtbx/langchain/tests/tst_contract_compliance.py' adding 'libtbx/langchain/tests/tst_copies_tracking.py' adding 'libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py' adding 'libtbx/langchain/tests/tst_cryoem_stop_validation.py' adding 'libtbx/langchain/tests/tst_data_input_filter.py' adding 'libtbx/langchain/tests/tst_decision_flow.py' adding 'libtbx/langchain/tests/tst_default_models.py' adding 'libtbx/langchain/tests/tst_density_modify_experiment_type.py' adding 'libtbx/langchain/tests/tst_dependencies.py' adding 'libtbx/langchain/tests/tst_diagnosed_failure_stop.py' adding 'libtbx/langchain/tests/tst_diagnostic_messages.py' adding 'libtbx/langchain/tests/tst_directive_extractor.py' adding 'libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py' adding 'libtbx/langchain/tests/tst_directive_extractor_grounding.py' adding 'libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py' adding 'libtbx/langchain/tests/tst_directive_layer_diagnostics.py' adding 'libtbx/langchain/tests/tst_directive_validation.py' adding 'libtbx/langchain/tests/tst_directive_validator.py' adding 'libtbx/langchain/tests/tst_directive_validator_typo_hints.py' adding 'libtbx/langchain/tests/tst_directives_integration.py' adding 'libtbx/langchain/tests/tst_display_data_model.py' adding 'libtbx/langchain/tests/tst_dock_and_stop.py' adding 'libtbx/langchain/tests/tst_docs_tools.py' adding 'libtbx/langchain/tests/tst_dry_run.py' adding 'libtbx/langchain/tests/tst_error_analyzer.py' adding 'libtbx/langchain/tests/tst_error_classifier.py' adding 'libtbx/langchain/tests/tst_event_formatter_file_categories.py' adding 'libtbx/langchain/tests/tst_event_system.py' adding 'libtbx/langchain/tests/tst_explanation_prompts.py' adding 'libtbx/langchain/tests/tst_extended_stop_phrasings.py' adding 'libtbx/langchain/tests/tst_extract_raw_advice.py' adding 'libtbx/langchain/tests/tst_extraction_failure_visibility.py' adding 'libtbx/langchain/tests/tst_fabricated_stop_condition.py' adding 'libtbx/langchain/tests/tst_file_categorization.py' adding 'libtbx/langchain/tests/tst_file_categorizer.py' adding 'libtbx/langchain/tests/tst_file_encoding.py' adding 'libtbx/langchain/tests/tst_file_utils.py' adding 'libtbx/langchain/tests/tst_fix_verification.py' adding 'libtbx/langchain/tests/tst_force_no_ai_server.py' adding 'libtbx/langchain/tests/tst_gate_evaluator.py' adding 'libtbx/langchain/tests/tst_general_resolver.py' adding 'libtbx/langchain/tests/tst_grounding_stop_after_requested.py' adding 'libtbx/langchain/tests/tst_h17_strip_executor.py' adding 'libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py' adding 'libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py' adding 'libtbx/langchain/tests/tst_hardcoded_cleanup.py' adding 'libtbx/langchain/tests/tst_history_analysis.py' adding 'libtbx/langchain/tests/tst_hypothesis_evaluator.py' adding 'libtbx/langchain/tests/tst_initialize_plan_smoke.py' adding 'libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py' adding 'libtbx/langchain/tests/tst_integration.py' adding 'libtbx/langchain/tests/tst_intent_classifier.py' adding 'libtbx/langchain/tests/tst_langchain_tools.py' adding 'libtbx/langchain/tests/tst_ligand_workflow_restart.py' adding 'libtbx/langchain/tests/tst_llm_unavailable_notice.py' adding 'libtbx/langchain/tests/tst_log_extractor.py' adding 'libtbx/langchain/tests/tst_metric_patterns.py' adding 'libtbx/langchain/tests/tst_metrics_analyzer.py' adding 'libtbx/langchain/tests/tst_mtz_crosscheck.py' adding 'libtbx/langchain/tests/tst_mtz_phases_session_blocking.py' adding 'libtbx/langchain/tests/tst_n_bugs.py' adding 'libtbx/langchain/tests/tst_new_programs.py' adding 'libtbx/langchain/tests/tst_obs_labels_auto_fill.py' adding 'libtbx/langchain/tests/tst_old_client_compat.py' adding 'libtbx/langchain/tests/tst_optional_dep_resilience.py' adding 'libtbx/langchain/tests/tst_pattern_manager.py' adding 'libtbx/langchain/tests/tst_perceive_stop_checks.py' adding 'libtbx/langchain/tests/tst_phase0_static_audit.py' adding 'libtbx/langchain/tests/tst_phase1_contract_gaps.py' adding 'libtbx/langchain/tests/tst_phase2_path_consistency.py' adding 'libtbx/langchain/tests/tst_phase2b_activation.py' adding 'libtbx/langchain/tests/tst_phase3_bug5.py' adding 'libtbx/langchain/tests/tst_phase3_serialization_symmetry.py' adding 'libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py' adding 'libtbx/langchain/tests/tst_phase4_history_flags.py' adding 'libtbx/langchain/tests/tst_phase5_error_classification.py' adding 'libtbx/langchain/tests/tst_phase6_category_consumer.py' adding 'libtbx/langchain/tests/tst_phase7_routing_simulation.py' adding 'libtbx/langchain/tests/tst_phase8_command_building.py' adding 'libtbx/langchain/tests/tst_phase9_llm_perturbation.py' adding 'libtbx/langchain/tests/tst_phaser_multimodel.py' adding 'libtbx/langchain/tests/tst_phil_namespace_cleaner.py' adding 'libtbx/langchain/tests/tst_phil_validation.py' adding 'libtbx/langchain/tests/tst_placement_skip_rebuild.py' adding 'libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py' adding 'libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py' adding 'libtbx/langchain/tests/tst_plan_generator.py' adding 'libtbx/langchain/tests/tst_plan_lead_program_offer.py' adding 'libtbx/langchain/tests/tst_plan_schema.py' adding 'libtbx/langchain/tests/tst_planning_framework.py' adding 'libtbx/langchain/tests/tst_portkey_embedding_model.py' adding 'libtbx/langchain/tests/tst_predict_and_build_no_ncs.py' adding 'libtbx/langchain/tests/tst_preprocessor_file_override.py' adding 'libtbx/langchain/tests/tst_program_registration.py' adding 'libtbx/langchain/tests/tst_program_requirements.py' adding 'libtbx/langchain/tests/tst_protocol_version.py' adding 'libtbx/langchain/tests/tst_provider_error_classification.py' adding 'libtbx/langchain/tests/tst_provider_lock.py' adding 'libtbx/langchain/tests/tst_raw_advice_scanner.py' adding 'libtbx/langchain/tests/tst_reactive_deviation_hold.py' adding 'libtbx/langchain/tests/tst_reasoning_command_divergence.py' adding 'libtbx/langchain/tests/tst_rebuild_template_selection.py' adding 'libtbx/langchain/tests/tst_refine_final_rfree.py' adding 'libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py' adding 'libtbx/langchain/tests/tst_resume_reopen_stages.py' adding 'libtbx/langchain/tests/tst_rfree_flags_missing.py' adding 'libtbx/langchain/tests/tst_rfree_generate_guard.py' adding 'libtbx/langchain/tests/tst_rfree_lock_reconciliation.py' adding 'libtbx/langchain/tests/tst_rfree_resolution_stop.py' adding 'libtbx/langchain/tests/tst_safe_float_consolidation.py' adding 'libtbx/langchain/tests/tst_sanity_checker.py' adding 'libtbx/langchain/tests/tst_scenario_tracer.py' adding 'libtbx/langchain/tests/tst_sequence_only_routing.py' adding 'libtbx/langchain/tests/tst_session_directives.py' adding 'libtbx/langchain/tests/tst_session_summary.py' adding 'libtbx/langchain/tests/tst_session_tools.py' adding 'libtbx/langchain/tests/tst_settings_list_coercion.py' adding 'libtbx/langchain/tests/tst_shared_code_imports.py' adding 'libtbx/langchain/tests/tst_silent_stop_abort_messages.py' adding 'libtbx/langchain/tests/tst_simple_extractor_validation.py' adding 'libtbx/langchain/tests/tst_skip_promotion.py' adding 'libtbx/langchain/tests/tst_skip_to_program.py' adding 'libtbx/langchain/tests/tst_solve_action_keywords.py' adding 'libtbx/langchain/tests/tst_space_group_validation.py' adding 'libtbx/langchain/tests/tst_spurious_stop_after_requested.py' adding 'libtbx/langchain/tests/tst_standalone_consistency.py' adding 'libtbx/langchain/tests/tst_state_serialization.py' adding 'libtbx/langchain/tests/tst_step1f_single_emit.py' adding 'libtbx/langchain/tests/tst_stop_condition_false_positive.py' adding 'libtbx/langchain/tests/tst_stop_condition_fix.py' adding 'libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py' adding 'libtbx/langchain/tests/tst_stop_reason_codes.py' adding 'libtbx/langchain/tests/tst_stop_reason_prompt.py' adding 'libtbx/langchain/tests/tst_strategy_memory.py' adding 'libtbx/langchain/tests/tst_structure_model.py' adding 'libtbx/langchain/tests/tst_summary_display.py' adding 'libtbx/langchain/tests/tst_supported_providers_single_source.py' adding 'libtbx/langchain/tests/tst_template.py' adding 'libtbx/langchain/tests/tst_thinking_agent.py' adding 'libtbx/langchain/tests/tst_thinking_defense.py' adding 'libtbx/langchain/tests/tst_transport.py' adding 'libtbx/langchain/tests/tst_user_advice_filter.py' adding 'libtbx/langchain/tests/tst_utils.py' adding 'libtbx/langchain/tests/tst_v112_13_fixes.py' adding 'libtbx/langchain/tests/tst_v120_providers.py' adding 'libtbx/langchain/tests/tst_validate_file_overrides.py' adding 'libtbx/langchain/tests/tst_validate_step_after_program_guard.py' adding 'libtbx/langchain/tests/tst_validation_history.py' adding 'libtbx/langchain/tests/tst_workflow_complete_stop.py' adding 'libtbx/langchain/tests/tst_workflow_state.py' adding 'libtbx/langchain/tests/tst_yaml_config.py' adding 'libtbx/langchain/tests/tst_yaml_tools.py' adding 'libtbx/langchain/tests/integration/__init__.py' adding 'libtbx/langchain/tests/llm/__init__.py' adding 'libtbx/langchain/tests/llm/canary_check.py' adding 'libtbx/langchain/tests/llm/framework.py' adding 'libtbx/langchain/tests/llm/run_llm_tests.py' adding 'libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py' adding 'libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py' adding 'libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py' adding 'libtbx/langchain/tests/llm/tst_c1_raw_authority.py' adding 'libtbx/langchain/tests/llm/tst_directive_extraction.py' adding 'libtbx/langchain/tests/llm/tst_framework_self.py' adding 'libtbx/langchain/tests/llm/tst_planning.py' adding 'libtbx/langchain/utils/__init__.py' adding 'libtbx/langchain/utils/query.py' adding 'libtbx/langchain/utils/run_utils.py' adding 'libtbx/langchain/utils/text_processing.py' adding 'libtbx/phil/__init__.py' adding 'libtbx/phil/command_line.py' adding 'libtbx/phil/experimental.py' adding 'libtbx/phil/gui_objects.py' adding 'libtbx/phil/interface.py' adding 'libtbx/phil/parser.py' adding 'libtbx/phil/tokenizer.py' adding 'libtbx/phil/tst.py' adding 'libtbx/phil/tst_experimental.py' adding 'libtbx/phil/tst_interface.py' adding 'libtbx/phil/tst_tokenizer.py' adding 'libtbx/program_utils/__init__.py' adding 'libtbx/program_utils/result.py' adding 'libtbx/program_utils/statistics_info.py' adding 'libtbx/queuing_system_utils/__init__.py' adding 'libtbx/queuing_system_utils/communication.py' adding 'libtbx/queuing_system_utils/generic.py' adding 'libtbx/queuing_system_utils/looping.py' adding 'libtbx/queuing_system_utils/lsf.py' adding 'libtbx/queuing_system_utils/pbs_utils.py' adding 'libtbx/queuing_system_utils/remote.py' adding 'libtbx/queuing_system_utils/scheduling.py' adding 'libtbx/queuing_system_utils/scheduling_helpers.py' adding 'libtbx/queuing_system_utils/sge_utils.py' adding 'libtbx/queuing_system_utils/tst.py' adding 'libtbx/queuing_system_utils/processing/__init__.py' adding 'libtbx/queuing_system_utils/processing/errors.py' adding 'libtbx/queuing_system_utils/processing/polling.py' adding 'libtbx/queuing_system_utils/processing/status.py' adding 'libtbx/queuing_system_utils/processing/submission.py' adding 'libtbx/queuing_system_utils/processing/transfer.py' adding 'libtbx/queuing_system_utils/processing/util.py' adding 'libtbx/scheduling/__init__.py' adding 'libtbx/scheduling/cluster_handler.py' adding 'libtbx/scheduling/file_queue.py' adding 'libtbx/scheduling/job_scheduler.py' adding 'libtbx/scheduling/mainthread.py' adding 'libtbx/scheduling/mp_handler.py' adding 'libtbx/scheduling/parallel_for.py' adding 'libtbx/scheduling/philgen.py' adding 'libtbx/scheduling/process_pool.py' adding 'libtbx/scheduling/result.py' adding 'libtbx/scheduling/shared_resource.py' adding 'libtbx/scheduling/socket_queue.py' adding 'libtbx/scheduling/stacktrace.py' adding 'libtbx/scheduling/thread_handler.py' adding 'libtbx/server/FileClient.py' adding 'libtbx/server/FileServer.py' adding 'libtbx/server/FileSocket.py' adding 'libtbx/server/SocketServer.py' adding 'libtbx/server/StartServer.py' adding 'libtbx/server/__init__.py' adding 'libtbx/sphinx/__init__.py' adding 'libtbx/sphinx/phil.py' adding 'libtbx/sphinx/pubmed.py' adding 'libtbx/sphinx/python_string.py' adding 'libtbx/test_utils/__init__.py' adding 'libtbx/test_utils/parallel.py' adding 'mmtbx/__init__.py' adding 'mmtbx/arrays.py' adding 'mmtbx/clashes.py' adding 'mmtbx/domains_from_pae.py' adding 'mmtbx/f_model_info.py' adding 'mmtbx/find_peaks.py' adding 'mmtbx/grow_density.py' adding 'mmtbx/invariant_domain.py' adding 'mmtbx/lattice.py' adding 'mmtbx/libtbx_refresh.py' adding 'mmtbx/map_tools.py' adding 'mmtbx/model_vs_data.py' adding 'mmtbx/msa.py' adding 'mmtbx/pdb_distances.py' adding 'mmtbx/pdb_symmetry.py' adding 'mmtbx/pdbtools.py' adding 'mmtbx/process_predicted_model.py' adding 'mmtbx/proq2.py' adding 'mmtbx/real_space_correlation.py' adding 'mmtbx/resolve_resources.py' adding 'mmtbx/restraints.py' adding 'mmtbx/run_tests.py' adding 'mmtbx/superpose.py' adding 'mmtbx/xmanip.py' adding 'mmtbx/xmanip_tasks.py' adding 'mmtbx/alignment/__init__.py' adding 'mmtbx/atomic_environment_vectors/__init__.py' adding 'mmtbx/atomic_environment_vectors/tst.py' adding 'mmtbx/building/__init__.py' adding 'mmtbx/building/cablam_idealization.py' adding 'mmtbx/building/extend_sidechains.py' adding 'mmtbx/building/loop_idealization.py' adding 'mmtbx/building/merge_models.py' adding 'mmtbx/building/minimize_chain.py' adding 'mmtbx/building/tst_extend_sidechains.py' adding 'mmtbx/building/tst_extend_sidechains_2.py' adding 'mmtbx/building/ligands/__init__.py' adding 'mmtbx/building/ligands/lifi.py' adding 'mmtbx/building/ligands/tst_00.py' adding 'mmtbx/building/loop_closure/__init__.py' adding 'mmtbx/building/loop_closure/berkeley_ramalyze.py' adding 'mmtbx/building/loop_closure/ccd.py' adding 'mmtbx/building/loop_closure/starting_conformations.py' adding 'mmtbx/building/loop_closure/utils.py' adding 'mmtbx/bulk_solvent/__init__.py' adding 'mmtbx/bulk_solvent/bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/example.py' adding 'mmtbx/bulk_solvent/example2.py' adding 'mmtbx/bulk_solvent/f_model_all_scales.py' adding 'mmtbx/bulk_solvent/kbu_refinery.py' adding 'mmtbx/bulk_solvent/mosaic.py' adding 'mmtbx/bulk_solvent/multi_mask_bulk_solvent.py' adding 'mmtbx/bulk_solvent/scaler.py' adding 'mmtbx/bulk_solvent/tst_aniso_scaler.py' adding 'mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py' adding 'mmtbx/bulk_solvent/tst_flat_nonuniform.py' adding 'mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py' adding 'mmtbx/bulk_solvent/tst_mosaic.py' adding 'mmtbx/bulk_solvent/tst_scaler.py' adding 'mmtbx/chemical_components/__init__.py' adding 'mmtbx/chemical_components/cif_parser.py' adding 'mmtbx/chemical_components/tst.py' adding 'mmtbx/command_line/__init__.py' adding 'mmtbx/command_line/altloc_remediate.py' adding 'mmtbx/command_line/angle.py' adding 'mmtbx/command_line/apply_ncs_to_ligand.py' adding 'mmtbx/command_line/arginine_geometry.py' adding 'mmtbx/command_line/atom_valence_simple.py' adding 'mmtbx/command_line/barbed_wire_analysis.py' adding 'mmtbx/command_line/cablam.py' adding 'mmtbx/command_line/cablam_idealization.py' adding 'mmtbx/command_line/cbetadev.py' adding 'mmtbx/command_line/cc_star.py' adding 'mmtbx/command_line/chiral_validation.py' adding 'mmtbx/command_line/cif_as_mtz.py' adding 'mmtbx/command_line/clashscore.py' adding 'mmtbx/command_line/clashscore2.py' adding 'mmtbx/command_line/comparama.py' adding 'mmtbx/command_line/debug_riding.py' adding 'mmtbx/command_line/density_modification.py' adding 'mmtbx/command_line/development_aev.py' adding 'mmtbx/command_line/development_fem.py' adding 'mmtbx/command_line/distance_difference.py' adding 'mmtbx/command_line/dynamics.py' adding 'mmtbx/command_line/electrons.py' adding 'mmtbx/command_line/emringer.py' adding 'mmtbx/command_line/emringer_score.py' adding 'mmtbx/command_line/estimate_bijvoet_ratio.py' adding 'mmtbx/command_line/f000.py' adding 'mmtbx/command_line/fab_elbow_angle.py' adding 'mmtbx/command_line/fake_f_obs.py' adding 'mmtbx/command_line/fetch_pdb.py' adding 'mmtbx/command_line/find_peaks_holes.py' adding 'mmtbx/command_line/find_residue_in_pdb.py' adding 'mmtbx/command_line/find_tls_groups.py' adding 'mmtbx/command_line/fmodel.py' adding 'mmtbx/command_line/fobs_minus_fobs_map.py' adding 'mmtbx/command_line/geometry_minimization.py' adding 'mmtbx/command_line/grow_density.py' adding 'mmtbx/command_line/hbond.py' adding 'mmtbx/command_line/helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/command_line/holton_geometry_validation.py' adding 'mmtbx/command_line/hydrogenate.py' adding 'mmtbx/command_line/kinemage.py' adding 'mmtbx/command_line/ligand_restraints_validation.py' adding 'mmtbx/command_line/map_box.py' adding 'mmtbx/command_line/map_comparison.py' adding 'mmtbx/command_line/map_to_model_histogram.py' adding 'mmtbx/command_line/map_to_structure_factors.py' adding 'mmtbx/command_line/maps.py' adding 'mmtbx/command_line/mask.py' adding 'mmtbx/command_line/massage_data.py' adding 'mmtbx/command_line/matthews.py' adding 'mmtbx/command_line/maximum_entropy_map.py' adding 'mmtbx/command_line/model_idealization.py' adding 'mmtbx/command_line/model_map.py' adding 'mmtbx/command_line/model_model_distances.py' adding 'mmtbx/command_line/model_vs_data.py' adding 'mmtbx/command_line/model_vs_map.py' adding 'mmtbx/command_line/model_vs_sequence.py' adding 'mmtbx/command_line/models_as_chains.py' adding 'mmtbx/command_line/molprobity.py' adding 'mmtbx/command_line/mon_lib_cif_triage.py' adding 'mmtbx/command_line/mp_geo.py' adding 'mmtbx/command_line/mp_validate_bonds.py' adding 'mmtbx/command_line/mtz2map.py' adding 'mmtbx/command_line/next_gen_atom_typing.py' adding 'mmtbx/command_line/next_gen_residue_typing.py' adding 'mmtbx/command_line/nonbonded_overlaps.py' adding 'mmtbx/command_line/omegalyze.py' adding 'mmtbx/command_line/pdb_atom_selection.py' adding 'mmtbx/command_line/pdb_interpretation.py' adding 'mmtbx/command_line/pdbtools.py' adding 'mmtbx/command_line/perigee.py' adding 'mmtbx/command_line/plan_sad_experiment.py' adding 'mmtbx/command_line/polder.py' adding 'mmtbx/command_line/prepare_pdb_deposition.py' adding 'mmtbx/command_line/probe2.py' adding 'mmtbx/command_line/probescore_ligand.py' adding 'mmtbx/command_line/process_predicted_model.py' adding 'mmtbx/command_line/prune_model.py' adding 'mmtbx/command_line/quantum_interface.py' adding 'mmtbx/command_line/r_factor_statistics.py' adding 'mmtbx/command_line/rama_z.py' adding 'mmtbx/command_line/ramalyze.py' adding 'mmtbx/command_line/rank_scale_map.py' adding 'mmtbx/command_line/real_space_correlation.py' adding 'mmtbx/command_line/real_space_diff_map.py' adding 'mmtbx/command_line/rebuild_cablam_cache.py' adding 'mmtbx/command_line/rebuild_rotarama_cache.py' adding 'mmtbx/command_line/reciprocal_space_arrays.py' adding 'mmtbx/command_line/reduce2.py' adding 'mmtbx/command_line/reduce_cryoem_resolution.py' adding 'mmtbx/command_line/refine_anomalous_substructure.py' adding 'mmtbx/command_line/remove_outliers.py' adding 'mmtbx/command_line/ribbons.py' adding 'mmtbx/command_line/rigid_bond_test.py' adding 'mmtbx/command_line/ringer.py' adding 'mmtbx/command_line/rna_validate.py' adding 'mmtbx/command_line/rna_validate_bonds.py' adding 'mmtbx/command_line/rna_validate_puckers.py' adding 'mmtbx/command_line/rna_validate_suites.py' adding 'mmtbx/command_line/rotalyze.py' adding 'mmtbx/command_line/search_pdb_symmetry.py' adding 'mmtbx/command_line/secondary_structure_restraints.py' adding 'mmtbx/command_line/secondary_structure_validation.py' adding 'mmtbx/command_line/select_best_starting_model.py' adding 'mmtbx/command_line/show_r_factors_by_shell.py' adding 'mmtbx/command_line/sisa.py' adding 'mmtbx/command_line/sort_hetatms.py' adding 'mmtbx/command_line/ss_idealization.py' adding 'mmtbx/command_line/suitename.py' adding 'mmtbx/command_line/suitename_old.py' adding 'mmtbx/command_line/super.py' adding 'mmtbx/command_line/superpose.py' adding 'mmtbx/command_line/taam_minus_iam.py' adding 'mmtbx/command_line/table_one.py' adding 'mmtbx/command_line/tls.py' adding 'mmtbx/command_line/tls_analysis.py' adding 'mmtbx/command_line/tls_as_xyz.py' adding 'mmtbx/command_line/undowser.py' adding 'mmtbx/command_line/undowser2.py' adding 'mmtbx/command_line/validate_H_cl_app.py' adding 'mmtbx/command_line/validate_ligands.py' adding 'mmtbx/command_line/validation_summary.py' adding 'mmtbx/command_line/verify_mon_lib_data.py' adding 'mmtbx/command_line/water_b_factors.py' adding 'mmtbx/command_line/where_is_that_cif_file.py' adding 'mmtbx/command_line/xmanip.py' adding 'mmtbx/command_line/xtrapol8.py' adding 'mmtbx/command_line/xtriage.py' adding 'mmtbx/conformation_dependent_library/LinkedResidues.py' adding 'mmtbx/conformation_dependent_library/__init__.py' adding 'mmtbx/conformation_dependent_library/altloc_weighting.py' adding 'mmtbx/conformation_dependent_library/bond_angle_registry.py' adding 'mmtbx/conformation_dependent_library/cdl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_setup.py' adding 'mmtbx/conformation_dependent_library/cdl_svl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_utils.py' adding 'mmtbx/conformation_dependent_library/check_cdl_database.py' adding 'mmtbx/conformation_dependent_library/density_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/enol_peptide_restraints.py' adding 'mmtbx/conformation_dependent_library/histidines.py' adding 'mmtbx/conformation_dependent_library/hpdl_database.py' adding 'mmtbx/conformation_dependent_library/hydrogen_bonding.py' adding 'mmtbx/conformation_dependent_library/investigate_rotamer_space.py' adding 'mmtbx/conformation_dependent_library/mcl.py' adding 'mmtbx/conformation_dependent_library/mcl_sf4_coordination.py' adding 'mmtbx/conformation_dependent_library/metal_coordination_library.py' adding 'mmtbx/conformation_dependent_library/multi_base_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_cdl_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_class.py' adding 'mmtbx/conformation_dependent_library/nucleotides.py' adding 'mmtbx/conformation_dependent_library/omega.py' adding 'mmtbx/conformation_dependent_library/omega_database.py' adding 'mmtbx/conformation_dependent_library/pH_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/rdl_database.py' adding 'mmtbx/conformation_dependent_library/rotamers.py' adding 'mmtbx/conformation_dependent_library/sf4_restraints.py' adding 'mmtbx/conformation_dependent_library/testing_utils.py' adding 'mmtbx/conformation_dependent_library/tst_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_esd.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py' adding 'mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py' adding 'mmtbx/conformation_dependent_library/tst_enol_peptide.py' adding 'mmtbx/conformation_dependent_library/tst_hpdl.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_01.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_02.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_03.py' adding 'mmtbx/conformation_dependent_library/tst_multi_residue_rna.py' adding 'mmtbx/conformation_dependent_library/tst_mutli_residue.py' adding 'mmtbx/conformation_dependent_library/tst_omega_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_pH_mechanism.py' adding 'mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py' adding 'mmtbx/conformation_dependent_library/tst_rdl.py' adding 'mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py' adding 'mmtbx/conformation_dependent_library/utils.py' adding 'mmtbx/den/__init__.py' adding 'mmtbx/den/plot_weights.py' adding 'mmtbx/den/refinement.py' adding 'mmtbx/density_modification/__init__.py' adding 'mmtbx/density_modification/tst_density_modification.py' adding 'mmtbx/disorder/__init__.py' adding 'mmtbx/disorder/analyze_model.py' adding 'mmtbx/disorder/backbone.py' adding 'mmtbx/disorder/tst.py' adding 'mmtbx/disorder/tst_analyze_model.py' adding 'mmtbx/disorder/tst_backbone.py' adding 'mmtbx/dynamics/__init__.py' adding 'mmtbx/dynamics/cartesian_dynamics.py' adding 'mmtbx/dynamics/constants.py' adding 'mmtbx/dynamics/ensemble_cd.py' adding 'mmtbx/dynamics/simulated_annealing.py' adding 'mmtbx/dynamics/tst_cartesian_dynamics.py' adding 'mmtbx/dynamics/tst_sa.py' adding 'mmtbx/f_model/__init__.py' adding 'mmtbx/f_model/f_model.py' adding 'mmtbx/f_model/f_model_info.py' adding 'mmtbx/geometry/__init__.py' adding 'mmtbx/geometry/altloc.py' adding 'mmtbx/geometry/asa.py' adding 'mmtbx/geometry/clash.py' adding 'mmtbx/geometry/indexing.py' adding 'mmtbx/geometry/shared_types.py' adding 'mmtbx/geometry/sphere_surface_sampling.py' adding 'mmtbx/geometry/topology.py' adding 'mmtbx/geometry_restraints/__init__.py' adding 'mmtbx/geometry_restraints/afitt.py' adding 'mmtbx/geometry_restraints/base_qm_manager.py' adding 'mmtbx/geometry_restraints/c_beta.py' adding 'mmtbx/geometry_restraints/external.py' adding 'mmtbx/geometry_restraints/geo_file_parsing.py' adding 'mmtbx/geometry_restraints/mopac_manager.py' adding 'mmtbx/geometry_restraints/orca_manager.py' adding 'mmtbx/geometry_restraints/qi_utils.py' adding 'mmtbx/geometry_restraints/qm_manager.py' adding 'mmtbx/geometry_restraints/quantum_interface.py' adding 'mmtbx/geometry_restraints/quantum_restraints_manager.py' adding 'mmtbx/geometry_restraints/ramachandran.py' adding 'mmtbx/geometry_restraints/reference.py' adding 'mmtbx/geometry_restraints/tst_c_beta_restraints.py' adding 'mmtbx/geometry_restraints/tst_geo_file_parsing.py' adding 'mmtbx/geometry_restraints/tst_manager.py' adding 'mmtbx/geometry_restraints/tst_ramachandran.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate2.py' adding 'mmtbx/geometry_restraints/tst_replace_in_place.py' adding 'mmtbx/geometry_restraints/tst_xtb_manager.py' adding 'mmtbx/geometry_restraints/xtb_manager.py' adding 'mmtbx/geometry_restraints/torsion_restraints/__init__.py' adding 'mmtbx/geometry_restraints/torsion_restraints/reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py' adding 'mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/utils.py' adding 'mmtbx/hydrogens/__init__.py' adding 'mmtbx/hydrogens/build_hydrogens.py' adding 'mmtbx/hydrogens/connectivity.py' adding 'mmtbx/hydrogens/find.py' adding 'mmtbx/hydrogens/neutron_utils.py' adding 'mmtbx/hydrogens/parameterization.py' adding 'mmtbx/hydrogens/reduce_hydrogen.py' adding 'mmtbx/hydrogens/riding.py' adding 'mmtbx/hydrogens/specialised_hydrogen_atoms.py' adding 'mmtbx/hydrogens/tst.py' adding 'mmtbx/hydrogens/tst_add_hydrogen.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_1.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_10.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_11.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_2.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_3.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_4.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_5.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_6.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_7.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_8.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_9.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_time.py' adding 'mmtbx/hydrogens/tst_connectivity.py' adding 'mmtbx/hydrogens/tst_const_dihedral.py' adding 'mmtbx/hydrogens/tst_parameterization_1.py' adding 'mmtbx/hydrogens/tst_parameterization_2.py' adding 'mmtbx/hydrogens/tst_parameterization_3.py' adding 'mmtbx/hydrogens/tst_parameterization_4.py' adding 'mmtbx/hydrogens/tst_parameterization_5.py' adding 'mmtbx/hydrogens/tst_parameterization_6.py' adding 'mmtbx/hydrogens/tst_parameterization_7.py' adding 'mmtbx/hydrogens/tst_parameterization_8.py' adding 'mmtbx/hydrogens/tst_parameterization_9.py' adding 'mmtbx/hydrogens/tst_riding_coefficients.py' adding 'mmtbx/hydrogens/tst_riding_fd_1.py' adding 'mmtbx/hydrogens/tst_riding_fd_2.py' adding 'mmtbx/hydrogens/tst_riding_fd_3.py' adding 'mmtbx/hydrogens/tst_riding_fd_4.py' adding 'mmtbx/hydrogens/tst_riding_fd_5.py' adding 'mmtbx/hydrogens/tst_riding_manager.py' adding 'mmtbx/hydrogens/tst_riding_minimize.py' adding 'mmtbx/hydrogens/tst_validate_H.py' adding 'mmtbx/hydrogens/validate_H.py' adding 'mmtbx/ias/__init__.py' adding 'mmtbx/ias/tst_ias.py' adding 'mmtbx/idealized_aa_residues/__init__.py' adding 'mmtbx/idealized_aa_residues/all_his.py' adding 'mmtbx/idealized_aa_residues/rotamer_manager.py' adding 'mmtbx/idealized_aa_residues/sample_rotamers.py' adding 'mmtbx/idealized_aa_residues/tst.py' adding 'mmtbx/ions/__init__.py' adding 'mmtbx/ions/build.py' adding 'mmtbx/ions/environment.py' adding 'mmtbx/ions/geometry.py' adding 'mmtbx/ions/halides.py' adding 'mmtbx/ions/identify.py' adding 'mmtbx/ions/tst_environment.py' adding 'mmtbx/ions/tst_geometries.py' adding 'mmtbx/ions/tst_parameters.py' adding 'mmtbx/ions/tst_pick_approx_zn.py' adding 'mmtbx/ions/tst_pick_ca.py' adding 'mmtbx/ions/tst_pick_ca_svm.py' adding 'mmtbx/ions/tst_pick_k.py' adding 'mmtbx/ions/tst_pick_mg.py' adding 'mmtbx/ions/tst_pickle.py' adding 'mmtbx/ions/tst_symmetry_axis.py' adding 'mmtbx/ions/tst_utils.py' adding 'mmtbx/ions/tst_validate_ca.py' adding 'mmtbx/ions/tst_validate_mg.py' adding 'mmtbx/ions/utils.py' adding 'mmtbx/ions/svm/__init__.py' adding 'mmtbx/ions/svm/dump_sites.py' adding 'mmtbx/ions/svm/tst_classifier_01.py' adding 'mmtbx/ions/svm/tst_classifier_02.py' adding 'mmtbx/ions/svm/utils.py' adding 'mmtbx/kinemage/__init__.py' adding 'mmtbx/kinemage/nrubs.py' adding 'mmtbx/kinemage/ribbon_rendering.py' adding 'mmtbx/kinemage/ribbons.py' adding 'mmtbx/kinemage/tst_validation.py' adding 'mmtbx/kinemage/validation.py' adding 'mmtbx/ligands/__init__.py' adding 'mmtbx/ligands/chemistry.py' adding 'mmtbx/ligands/electrons.py' adding 'mmtbx/ligands/hierarchy_utils.py' adding 'mmtbx/ligands/rdkit_utils.py' adding 'mmtbx/ligands/ready_set_basics.py' adding 'mmtbx/ligands/ready_set_utils.py' adding 'mmtbx/ligands/tst_electron_scripting.py' adding 'mmtbx/ligands/tst_ready_set_utils.py' adding 'mmtbx/ligands/tst_xtal_screens.py' adding 'mmtbx/ligands/xtal_screens.py' adding 'mmtbx/maps/__init__.py' adding 'mmtbx/maps/composite_omit_map.py' adding 'mmtbx/maps/correlation.py' adding 'mmtbx/maps/fem.py' adding 'mmtbx/maps/fobs_minus_fobs_map.py' adding 'mmtbx/maps/kick.py' adding 'mmtbx/maps/map_model_cc.py' adding 'mmtbx/maps/mtriage.py' adding 'mmtbx/maps/polder.py' adding 'mmtbx/maps/superpose.py' adding 'mmtbx/maps/tst_composite_omit_map.py' adding 'mmtbx/maps/tst_composite_omit_map_2.py' adding 'mmtbx/maps/tst_composite_omit_map_3.py' adding 'mmtbx/maps/tst_correlation.py' adding 'mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py' adding 'mmtbx/maps/utils.py' adding 'mmtbx/maps/xtrapol8.py' adding 'mmtbx/masks/__init__.py' adding 'mmtbx/masks/tst_asu_mask.py' adding 'mmtbx/masks/tst_masks.py' adding 'mmtbx/max_lik/__init__.py' adding 'mmtbx/max_lik/max_like_non_uniform.py' adding 'mmtbx/max_lik/maxlik.py' adding 'mmtbx/max_lik/tst_max_lik.py' adding 'mmtbx/max_lik/tst_maxlik.py' adding 'mmtbx/model/__init__.py' adding 'mmtbx/model/model.py' adding 'mmtbx/model/restraints.py' adding 'mmtbx/model/statistics.py' adding 'mmtbx/model/utils.py' adding 'mmtbx/monomer_library/__init__.py' adding 'mmtbx/monomer_library/bondlength_defaults.py' adding 'mmtbx/monomer_library/cif_triage.py' adding 'mmtbx/monomer_library/cif_types.py' adding 'mmtbx/monomer_library/conformation_dependent_restraints.py' adding 'mmtbx/monomer_library/conv_v2_v3.py' adding 'mmtbx/monomer_library/correct_hydrogen_geometries.py' adding 'mmtbx/monomer_library/geostd_utils.py' adding 'mmtbx/monomer_library/glyco_chiral_values.py' adding 'mmtbx/monomer_library/glyco_utils.py' adding 'mmtbx/monomer_library/hydrogen_restrictions.py' adding 'mmtbx/monomer_library/idealized_aa.py' adding 'mmtbx/monomer_library/linking_mixins.py' adding 'mmtbx/monomer_library/linking_setup.py' adding 'mmtbx/monomer_library/linking_utils.py' adding 'mmtbx/monomer_library/mmtbx_utils.py' adding 'mmtbx/monomer_library/pdb_interpretation.py' adding 'mmtbx/monomer_library/populate_auto_linking_origin_ids.py' adding 'mmtbx/monomer_library/rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/rotamer_utils.py' adding 'mmtbx/monomer_library/server.py' adding 'mmtbx/monomer_library/tst_all_cif_files.py' adding 'mmtbx/monomer_library/tst_carbo_linking.py' adding 'mmtbx/monomer_library/tst_chg.py' adding 'mmtbx/monomer_library/tst_cif_triage.py' adding 'mmtbx/monomer_library/tst_cif_types.py' adding 'mmtbx/monomer_library/tst_correct_hydrogens.py' adding 'mmtbx/monomer_library/tst_deuterium_terminii.py' adding 'mmtbx/monomer_library/tst_geo_reduce_for_tardy.py' adding 'mmtbx/monomer_library/tst_glyco_coordination.py' adding 'mmtbx/monomer_library/tst_glyco_hand.py' adding 'mmtbx/monomer_library/tst_idealized_aa.py' adding 'mmtbx/monomer_library/tst_iron_sulfur_clusters.py' adding 'mmtbx/monomer_library/tst_linking.py' adding 'mmtbx/monomer_library/tst_metal_coordination.py' adding 'mmtbx/monomer_library/tst_motif.py' adding 'mmtbx/monomer_library/tst_neutron_distance.py' adding 'mmtbx/monomer_library/tst_paral_geo.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_2.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_3.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_4.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_5.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py' adding 'mmtbx/monomer_library/tst_protein_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_dna_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/tst_rotamer_utils.py' adding 'mmtbx/monomer_library/tst_selection.py' adding 'mmtbx/monomer_library/tst_server.py' adding 'mmtbx/monomer_library/tst_superpose_ideal.py' adding 'mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py' adding 'mmtbx/monomer_library/tst_user_supplied_library.py' adding 'mmtbx/nci/__init__.py' adding 'mmtbx/nci/data_filtering.py' adding 'mmtbx/nci/hbond.py' adding 'mmtbx/nci/skew_kurt_plot.py' adding 'mmtbx/nci/tst_hbond.py' adding 'mmtbx/ncs/__init__.py' adding 'mmtbx/ncs/cartesian_restraints.py' adding 'mmtbx/ncs/ligands.py' adding 'mmtbx/ncs/ncs.py' adding 'mmtbx/ncs/ncs_params.py' adding 'mmtbx/ncs/ncs_restraints_group_list.py' adding 'mmtbx/ncs/ncs_search.py' adding 'mmtbx/ncs/ncs_utils.py' adding 'mmtbx/ncs/tncs.py' adding 'mmtbx/pair_interaction/__init__.py' adding 'mmtbx/pair_interaction/pair_interaction.py' adding 'mmtbx/pair_interaction/tst_00.py' adding 'mmtbx/pair_interaction/tst_01.py' adding 'mmtbx/pair_interaction/tst_02.py' adding 'mmtbx/pair_interaction/tst_03.py' adding 'mmtbx/pair_interaction/tst_04.py' adding 'mmtbx/pair_interaction/tst_05.py' adding 'mmtbx/polygon/__init__.py' adding 'mmtbx/polygon/output.py' adding 'mmtbx/polygon/tst.py' adding 'mmtbx/polygon/tst_gui.py' adding 'mmtbx/polygon/tst_polygon_data.py' adding 'mmtbx/probe/AtomTypes.py' adding 'mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py' adding 'mmtbx/probe/Helpers.py' adding 'mmtbx/probe/__init__.py' adding 'mmtbx/probe/tst_mmtbx_probe_ext.py' adding 'mmtbx/programs/__init__.py' adding 'mmtbx/programs/arginine_geometry.py' adding 'mmtbx/programs/atom_selection.py' adding 'mmtbx/programs/atom_valence_simple.py' adding 'mmtbx/programs/barbed_wire_analysis.py' adding 'mmtbx/programs/cablam.py' adding 'mmtbx/programs/cablam_idealization.py' adding 'mmtbx/programs/cbetadev.py' adding 'mmtbx/programs/chiral_validation.py' adding 'mmtbx/programs/clashscore.py' adding 'mmtbx/programs/clashscore2.py' adding 'mmtbx/programs/comparama.py' adding 'mmtbx/programs/debug_riding.py' adding 'mmtbx/programs/elbow_services.py' adding 'mmtbx/programs/emringer.py' adding 'mmtbx/programs/fetch.py' adding 'mmtbx/programs/fmodel.py' adding 'mmtbx/programs/hbond.py' adding 'mmtbx/programs/holton_geometry_validation.py' adding 'mmtbx/programs/hydrogenate.py' adding 'mmtbx/programs/ligand_restraints_validation.py' adding 'mmtbx/programs/mask.py' adding 'mmtbx/programs/matthews.py' adding 'mmtbx/programs/model_vs_sequence.py' adding 'mmtbx/programs/mp_validate_bonds.py' adding 'mmtbx/programs/next_gen_atom_typing.py' adding 'mmtbx/programs/next_gen_residue_typing.py' adding 'mmtbx/programs/nonbonded_overlaps.py' adding 'mmtbx/programs/omegalyze.py' adding 'mmtbx/programs/pdb_as_cif.py' adding 'mmtbx/programs/pdbtools.py' adding 'mmtbx/programs/polder.py' adding 'mmtbx/programs/prepare_pdb_deposition.py' adding 'mmtbx/programs/probe2.py' adding 'mmtbx/programs/probescore_ligand.py' adding 'mmtbx/programs/process_predicted_model.py' adding 'mmtbx/programs/quantum_interface.py' adding 'mmtbx/programs/rama_z.py' adding 'mmtbx/programs/ramalyze.py' adding 'mmtbx/programs/real_space_correlation.py' adding 'mmtbx/programs/reduce2.py' adding 'mmtbx/programs/reduce_cryoem_resolution.py' adding 'mmtbx/programs/ribbons.py' adding 'mmtbx/programs/rna_validate.py' adding 'mmtbx/programs/rna_validate_bonds.py' adding 'mmtbx/programs/rna_validate_puckers.py' adding 'mmtbx/programs/rna_validate_suites.py' adding 'mmtbx/programs/rotalyze.py' adding 'mmtbx/programs/ss_idealization.py' adding 'mmtbx/programs/ss_validation.py' adding 'mmtbx/programs/suitename.py' adding 'mmtbx/programs/suitename_old.py' adding 'mmtbx/programs/taam_minus_iam.py' adding 'mmtbx/programs/undowser.py' adding 'mmtbx/programs/undowser2.py' adding 'mmtbx/programs/validate_ligands.py' adding 'mmtbx/programs/water_b_factors.py' adding 'mmtbx/programs/xtrapol8.py' adding 'mmtbx/real_space/__init__.py' adding 'mmtbx/real_space/tst.py' adding 'mmtbx/reduce/InteractionGraph.py' adding 'mmtbx/reduce/Movers.py' adding 'mmtbx/reduce/Optimizers.py' adding 'mmtbx/reduce/__init__.py' adding 'mmtbx/reduce/tst_mmtbx_reduce_ext.py' adding 'mmtbx/refinement/__init__.py' adding 'mmtbx/refinement/adp_refinement.py' adding 'mmtbx/refinement/anomalous_scatterer_groups.py' adding 'mmtbx/refinement/calculators.py' adding 'mmtbx/refinement/data.py' adding 'mmtbx/refinement/energy_monitor.py' adding 'mmtbx/refinement/flip_peptide_side_chain.py' adding 'mmtbx/refinement/geometry_minimization.py' adding 'mmtbx/refinement/group.py' adding 'mmtbx/refinement/inspect_tardy_trajectory.py' adding 'mmtbx/refinement/minimization.py' adding 'mmtbx/refinement/minimization_monitor.py' adding 'mmtbx/refinement/minimization_ncs_constraints.py' adding 'mmtbx/refinement/occupancies.py' adding 'mmtbx/refinement/orca.py' adding 'mmtbx/refinement/print_statistics.py' adding 'mmtbx/refinement/refinement_flags.py' adding 'mmtbx/refinement/restraints.py' adding 'mmtbx/refinement/rigid_body.py' adding 'mmtbx/refinement/select_best_starting_model.py' adding 'mmtbx/refinement/tardy.py' adding 'mmtbx/refinement/targets.py' adding 'mmtbx/refinement/tst_anomalous_scatterer_groups.py' adding 'mmtbx/refinement/tst_fit_rotamers.py' adding 'mmtbx/refinement/tst_group.py' adding 'mmtbx/refinement/tst_group_2.py' adding 'mmtbx/refinement/tst_misc.py' adding 'mmtbx/refinement/tst_occupancy_selections.py' adding 'mmtbx/refinement/tst_real_space_simple.py' adding 'mmtbx/refinement/tst_refinement_flags.py' adding 'mmtbx/refinement/tst_rigid_body.py' adding 'mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py' adding 'mmtbx/refinement/tst_select_best_starting_model.py' adding 'mmtbx/refinement/utils.py' adding 'mmtbx/refinement/weights.py' adding 'mmtbx/refinement/weights_params.py' adding 'mmtbx/refinement/wrappers.py' adding 'mmtbx/refinement/ensemble_refinement/__init__.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_probability.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_utils.py' adding 'mmtbx/refinement/real_space/__init__.py' adding 'mmtbx/refinement/real_space/adp.py' adding 'mmtbx/refinement/real_space/explode_and_refine.py' adding 'mmtbx/refinement/real_space/fit_his.py' adding 'mmtbx/refinement/real_space/fit_residue.py' adding 'mmtbx/refinement/real_space/fit_residues.py' adding 'mmtbx/refinement/real_space/fit_small_molecule.py' adding 'mmtbx/refinement/real_space/fit_water.py' adding 'mmtbx/refinement/real_space/individual_sites.py' adding 'mmtbx/refinement/real_space/occupancy.py' adding 'mmtbx/refinement/real_space/rigid_body.py' adding 'mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_7.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_selection.py' adding 'mmtbx/refinement/real_space/tst_fit_water.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_1.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_2.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_3.py' adding 'mmtbx/refinement/real_space/tst_monitor.py' adding 'mmtbx/refinement/real_space/tst_rigid_body.py' adding 'mmtbx/refinement/real_space/tst_weight.py' adding 'mmtbx/refinement/real_space/utils.py' adding 'mmtbx/refinement/real_space/weight.py' adding 'mmtbx/regression/__init__.py' adding 'mmtbx/regression/make_fake_anomalous_data.py' adding 'mmtbx/regression/tst_add_arrows_on_plot.py' adding 'mmtbx/regression/tst_add_h_to_water.py' adding 'mmtbx/regression/tst_adp_restraints.py' adding 'mmtbx/regression/tst_alignment.py' adding 'mmtbx/regression/tst_altloc_chain_break.py' adding 'mmtbx/regression/tst_altloc_remediate.py' adding 'mmtbx/regression/tst_angle.py' adding 'mmtbx/regression/tst_anomalous_substructure.py' adding 'mmtbx/regression/tst_apply_cif_restraints.py' adding 'mmtbx/regression/tst_arginine_geometry.py' adding 'mmtbx/regression/tst_cc_star.py' adding 'mmtbx/regression/tst_chain_comparison.py' adding 'mmtbx/regression/tst_chain_comparison_cif.py' adding 'mmtbx/regression/tst_cif_as_mtz_wavelengths.py' adding 'mmtbx/regression/tst_cis_trans_peptide_link.py' adding 'mmtbx/regression/tst_clashes.py' adding 'mmtbx/regression/tst_command_line_input.py' adding 'mmtbx/regression/tst_domains_from_pae.py' adding 'mmtbx/regression/tst_domains_from_pae_cif.py' adding 'mmtbx/regression/tst_dynamics_cli.py' adding 'mmtbx/regression/tst_examples.py' adding 'mmtbx/regression/tst_find_ncs.py' adding 'mmtbx/regression/tst_find_ss_structure.py' adding 'mmtbx/regression/tst_find_ss_structure_cif.py' adding 'mmtbx/regression/tst_flipping_his.py' adding 'mmtbx/regression/tst_fmodel.py' adding 'mmtbx/regression/tst_fmodel_2.py' adding 'mmtbx/regression/tst_fmodel_and_dm.py' adding 'mmtbx/regression/tst_fmodel_fd.py' adding 'mmtbx/regression/tst_fmodel_misc.py' adding 'mmtbx/regression/tst_fmodel_no_cryst1.py' adding 'mmtbx/regression/tst_geo_min_restraints_phil.py' adding 'mmtbx/regression/tst_geometry_minimization.py' adding 'mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/regression/tst_holton_geometry_validation.py' adding 'mmtbx/regression/tst_isomorphous_difference_misc.py' adding 'mmtbx/regression/tst_ligand_ncs.py' adding 'mmtbx/regression/tst_loop_closure.py' adding 'mmtbx/regression/tst_lrv.py' adding 'mmtbx/regression/tst_map_model_cc.py' adding 'mmtbx/regression/tst_map_type_parser.py' adding 'mmtbx/regression/tst_maps_misc.py' adding 'mmtbx/regression/tst_metal_link_1.py' adding 'mmtbx/regression/tst_minimize_chain.py' adding 'mmtbx/regression/tst_ml_estimate.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py' adding 'mmtbx/regression/tst_model_map.py' adding 'mmtbx/regression/tst_model_vs_map.py' adding 'mmtbx/regression/tst_model_vs_sequence.py' adding 'mmtbx/regression/tst_models_to_from_chains.py' adding 'mmtbx/regression/tst_msa.py' adding 'mmtbx/regression/tst_mtz2map.py' adding 'mmtbx/regression/tst_multi_residue_class.py' adding 'mmtbx/regression/tst_ordered_solvent.py' adding 'mmtbx/regression/tst_origin_ids.py' adding 'mmtbx/regression/tst_pdbtools.py' adding 'mmtbx/regression/tst_polder.py' adding 'mmtbx/regression/tst_polder_1.py' adding 'mmtbx/regression/tst_polder_2.py' adding 'mmtbx/regression/tst_polder_3.py' adding 'mmtbx/regression/tst_polder_4.py' adding 'mmtbx/regression/tst_polder_box.py' adding 'mmtbx/regression/tst_polder_ccs.py' adding 'mmtbx/regression/tst_probe.py' adding 'mmtbx/regression/tst_process_predicted_model.py' adding 'mmtbx/regression/tst_process_predicted_model_cif.py' adding 'mmtbx/regression/tst_prune_model.py' adding 'mmtbx/regression/tst_psi_phi_extraction.py' adding 'mmtbx/regression/tst_rank_scale_map.py' adding 'mmtbx/regression/tst_rdkit_utils_fragmentation.py' adding 'mmtbx/regression/tst_real_space_correlation.py' adding 'mmtbx/regression/tst_reduce.py' adding 'mmtbx/regression/tst_reduce_cryoem_resolution.py' adding 'mmtbx/regression/tst_reduce_custom_bond.py' adding 'mmtbx/regression/tst_reduce_switch.py' adding 'mmtbx/regression/tst_reduce_timeout.py' adding 'mmtbx/regression/tst_refine_anomalous_substructure.py' adding 'mmtbx/regression/tst_regularize_from_pdb.py' adding 'mmtbx/regression/tst_regularize_from_pdb_cif.py' adding 'mmtbx/regression/tst_ribbons.py' adding 'mmtbx/regression/tst_rigid_bond_test.py' adding 'mmtbx/regression/tst_ringer.py' adding 'mmtbx/regression/tst_sampled_model_density.py' adding 'mmtbx/regression/tst_scattering_table.py' adding 'mmtbx/regression/tst_scattering_type_registry.py' adding 'mmtbx/regression/tst_schrodinger_interface.py' adding 'mmtbx/regression/tst_sequence_validation.py' adding 'mmtbx/regression/tst_sort_hetatms.py' adding 'mmtbx/regression/tst_special_term_at_end.py' adding 'mmtbx/regression/tst_ss_validation_long_chainids.py' adding 'mmtbx/regression/tst_statistics_output.py' adding 'mmtbx/regression/tst_superpose.py' adding 'mmtbx/regression/tst_table_one.py' adding 'mmtbx/regression/tst_utils.py' adding 'mmtbx/regression/tst_validate_ligands.py' adding 'mmtbx/regression/tst_validate_ligands_2.py' adding 'mmtbx/regression/tst_validate_ligands_3.py' adding 'mmtbx/regression/tst_validation_summary.py' adding 'mmtbx/regression/model/__init__.py' adding 'mmtbx/regression/model/tst_model.py' adding 'mmtbx/regression/model/tst_model_2.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix_2.py' adding 'mmtbx/regression/model/tst_model_cart_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_dedeuterate.py' adding 'mmtbx/regression/model/tst_model_get_vdw_radii.py' adding 'mmtbx/regression/model/tst_model_merge.py' adding 'mmtbx/regression/model/tst_model_mtrix.py' adding 'mmtbx/regression/model/tst_model_ncs.py' adding 'mmtbx/regression/model/tst_model_neutralize_scatterers.py' adding 'mmtbx/regression/model/tst_model_pairs_within.py' adding 'mmtbx/regression/model/tst_model_ramachandran.py' adding 'mmtbx/regression/model/tst_model_remove_alternative_conformations.py' adding 'mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py' adding 'mmtbx/regression/model/tst_model_symmetry.py' adding 'mmtbx/regression/model/tst_model_tors_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_utils_merge_models.py' adding 'mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py' adding 'mmtbx/regression/ncs/__init__.py' adding 'mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py' adding 'mmtbx/regression/ncs/tst_ncs_restraints_group_list.py' adding 'mmtbx/regression/ncs/tst_ncs_search.py' adding 'mmtbx/regression/ncs/tst_ncs_search_flips.py' adding 'mmtbx/regression/ncs/tst_ncs_utils.py' adding 'mmtbx/regression/ncs/tst_restraints.py' adding 'mmtbx/regression/tls/__init__.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py' adding 'mmtbx/regression/tls/tst_get_t_scheme.py' adding 'mmtbx/regression/tls/tst_tls.py' adding 'mmtbx/regression/tls/tst_tls_analysis.py' adding 'mmtbx/regression/tls/tst_tls_as_xyz.py' adding 'mmtbx/regression/tls/tst_tls_optimise_amplitudes.py' adding 'mmtbx/regression/tls/tst_tls_refinement_fft.py' adding 'mmtbx/regression/tls/tst_tls_utils.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py' adding 'mmtbx/ringer/__init__.py' adding 'mmtbx/ringer/em_rolling.py' adding 'mmtbx/ringer/em_rscc.py' adding 'mmtbx/ringer/em_scoring.py' adding 'mmtbx/ringer/emringer.py' adding 'mmtbx/ringer/tst_em_rscc.py' adding 'mmtbx/ringer/tst_emringer.py' adding 'mmtbx/rotamer/__init__.py' adding 'mmtbx/rotamer/graphics.py' adding 'mmtbx/rotamer/n_dim_table.py' adding 'mmtbx/rotamer/nqh.py' adding 'mmtbx/rotamer/ramachandran_eval.py' adding 'mmtbx/rotamer/ramachandran_eval_deprecated.py' adding 'mmtbx/rotamer/rotamer_eval.py' adding 'mmtbx/rotamer/sidechain_angles.py' adding 'mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py' adding 'mmtbx/rotamer/tst_rotamer_eval.py' adding 'mmtbx/rsr/__init__.py' adding 'mmtbx/rsr/tst.py' adding 'mmtbx/scaling/__init__.py' adding 'mmtbx/scaling/absence_likelihood.py' adding 'mmtbx/scaling/absences.py' adding 'mmtbx/scaling/absolute_scaling.py' adding 'mmtbx/scaling/basic_analyses.py' adding 'mmtbx/scaling/bayesian_estimator.py' adding 'mmtbx/scaling/data_statistics.py' adding 'mmtbx/scaling/fa_estimation.py' adding 'mmtbx/scaling/make_param.py' adding 'mmtbx/scaling/massage_twin_detwin_data.py' adding 'mmtbx/scaling/matthews.py' adding 'mmtbx/scaling/mean_f_rms_f.py' adding 'mmtbx/scaling/outlier_plots.py' adding 'mmtbx/scaling/outlier_rejection.py' adding 'mmtbx/scaling/pair_analyses.py' adding 'mmtbx/scaling/plan_sad_experiment.py' adding 'mmtbx/scaling/pre_scale.py' adding 'mmtbx/scaling/random_omit.py' adding 'mmtbx/scaling/relative_scaling.py' adding 'mmtbx/scaling/relative_wilson.py' adding 'mmtbx/scaling/remove_outliers.py' adding 'mmtbx/scaling/sigmaa_estimation.py' adding 'mmtbx/scaling/ta_alpha_beta_calc.py' adding 'mmtbx/scaling/thorough_outlier_test.py' adding 'mmtbx/scaling/tst_absences.py' adding 'mmtbx/scaling/tst_bayesian_estimator.py' adding 'mmtbx/scaling/tst_massage_data.py' adding 'mmtbx/scaling/tst_mean_f_rms_f.py' adding 'mmtbx/scaling/tst_outlier.py' adding 'mmtbx/scaling/tst_plan_sad_experiment.py' adding 'mmtbx/scaling/tst_scaling.py' adding 'mmtbx/scaling/tst_sigmaa.py' adding 'mmtbx/scaling/tst_xtriage.py' adding 'mmtbx/scaling/tst_xtriage_twin_analyses.py' adding 'mmtbx/scaling/twin_analyses.py' adding 'mmtbx/scaling/twmad_scale.py' adding 'mmtbx/scaling/xtriage.py' adding 'mmtbx/secondary_structure/__init__.py' adding 'mmtbx/secondary_structure/find_ss_from_ca.py' adding 'mmtbx/secondary_structure/nucleic_acids.py' adding 'mmtbx/secondary_structure/proteins.py' adding 'mmtbx/secondary_structure/regularize_from_pdb.py' adding 'mmtbx/secondary_structure/secondary_structure_params.py' adding 'mmtbx/secondary_structure/ss_validation.py' adding 'mmtbx/secondary_structure/tst.py' adding 'mmtbx/secondary_structure/tst_insertion_codes.py' adding 'mmtbx/secondary_structure/tst_segid.py' adding 'mmtbx/secondary_structure/utils.py' adding 'mmtbx/secondary_structure/build/__init__.py' adding 'mmtbx/secondary_structure/build/ss_idealization.py' adding 'mmtbx/secondary_structure/build/tst_1.py' adding 'mmtbx/secondary_structure/build/tst_2.py' adding 'mmtbx/secondary_structure/build/tst_3.py' adding 'mmtbx/secondary_structure/build/tst_io.py' adding 'mmtbx/secondary_structure/build/tst_ss_id_ncs.py' adding 'mmtbx/sisa/__init__.py' adding 'mmtbx/sisa/optimize/__init__.py' adding 'mmtbx/sisa/optimize/mod_ga.py' adding 'mmtbx/sisa/optimize/mod_input.py' adding 'mmtbx/sisa/optimize/mod_masks.py' adding 'mmtbx/sisa/optimize/mod_mtz.py' adding 'mmtbx/sisa/optimize/mod_optimize.py' adding 'mmtbx/sisa/optimize/mod_util.py' adding 'mmtbx/solvent/__init__.py' adding 'mmtbx/solvent/ensemble_ordered_solvent.py' adding 'mmtbx/solvent/map_to_water.py' adding 'mmtbx/solvent/ordered_solvent.py' adding 'mmtbx/suitename/__init__.py' adding 'mmtbx/suitename/diangle.py' adding 'mmtbx/suitename/dualparse.py' adding 'mmtbx/suitename/mainchain.py' adding 'mmtbx/suitename/suitealyze.py' adding 'mmtbx/suitename/suitename.py' adding 'mmtbx/suitename/suitenamedefs.py' adding 'mmtbx/suitename/suiteninit.py' adding 'mmtbx/suitename/suiteninput.py' adding 'mmtbx/suitename/suitenout.py' adding 'mmtbx/suitename/suites.py' adding 'mmtbx/suitename/transdent.py' adding 'mmtbx/tls/__init__.py' adding 'mmtbx/tls/analysis.py' adding 'mmtbx/tls/command_line.py' adding 'mmtbx/tls/decompose.py' adding 'mmtbx/tls/ladp.py' adding 'mmtbx/tls/optimise_amplitudes.py' adding 'mmtbx/tls/perm10.py' adding 'mmtbx/tls/perm11.py' adding 'mmtbx/tls/perm12.py' adding 'mmtbx/tls/perm13.py' adding 'mmtbx/tls/perm14.py' adding 'mmtbx/tls/perm15.py' adding 'mmtbx/tls/tls_as_xyz.py' adding 'mmtbx/tls/tools.py' adding 'mmtbx/tls/utils.py' adding 'mmtbx/twinning/__init__.py' adding 'mmtbx/twinning/probabalistic_detwinning.py' adding 'mmtbx/twinning/twin_f_model.py' adding 'mmtbx/utils/__init__.py' adding 'mmtbx/utils/fab_elbow_angle.py' adding 'mmtbx/utils/grid2d.py' adding 'mmtbx/utils/ntc.py' adding 'mmtbx/utils/rotatable_bonds.py' adding 'mmtbx/utils/tst_switch_rotamers.py' adding 'mmtbx/validation/__init__.py' adding 'mmtbx/validation/analyze_peptides.py' adding 'mmtbx/validation/barbed_wire_analysis.py' adding 'mmtbx/validation/cablam.py' adding 'mmtbx/validation/cbd_utils.py' adding 'mmtbx/validation/cbetadev.py' adding 'mmtbx/validation/chain_comparison.py' adding 'mmtbx/validation/clashscore.py' adding 'mmtbx/validation/clashscore2.py' adding 'mmtbx/validation/comparama.py' adding 'mmtbx/validation/comprehensive_residue.py' adding 'mmtbx/validation/convert_lists.py' adding 'mmtbx/validation/datasets.py' adding 'mmtbx/validation/ensembles.py' adding 'mmtbx/validation/experimental.py' adding 'mmtbx/validation/fav_lists.py' adding 'mmtbx/validation/graphics.py' adding 'mmtbx/validation/holton_geometry_validation.py' adding 'mmtbx/validation/ligands.py' adding 'mmtbx/validation/mean_devs_PRO_phi_psi.py' adding 'mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py' adding 'mmtbx/validation/mean_devs_others_phi_psi.py' adding 'mmtbx/validation/model_properties.py' adding 'mmtbx/validation/mp_validate_bonds.py' adding 'mmtbx/validation/omegalyze.py' adding 'mmtbx/validation/phi_psi_2_data.py' adding 'mmtbx/validation/rama_z.py' adding 'mmtbx/validation/ramalyze.py' adding 'mmtbx/validation/restraints.py' adding 'mmtbx/validation/rna_validate.py' adding 'mmtbx/validation/rotalyze.py' adding 'mmtbx/validation/sequence.py' adding 'mmtbx/validation/undowser.py' adding 'mmtbx/validation/undowser2.py' adding 'mmtbx/validation/utils.py' adding 'mmtbx/validation/validate_ligands.py' adding 'mmtbx/validation/waters.py' adding 'mmtbx/validation/molprobity/__init__.py' adding 'mmtbx/validation/molprobity/kinemage_templates.py' adding 'mmtbx/validation/molprobity/mp_geo.py' adding 'mmtbx/validation/molprobity/percentile_clashscore.py' adding 'mmtbx/validation/molprobity/percentile_mpscore.py' adding 'mmtbx/validation/molprobity/probescore_ligand.py' adding 'mmtbx/validation/molprobity/table_from_json.py' adding 'mmtbx/validation/ramachandran/__init__.py' adding 'mmtbx/validation/ramachandran/convert_from_text.py' adding 'mmtbx/validation/regression/__init__.py' adding 'mmtbx/validation/regression/run_restraints.py' adding 'mmtbx/validation/regression/tst_cablam.py' adding 'mmtbx/validation/regression/tst_cablam_2.py' adding 'mmtbx/validation/regression/tst_cbetadev.py' adding 'mmtbx/validation/regression/tst_cbetadev_02.py' adding 'mmtbx/validation/regression/tst_chiral_validation.py' adding 'mmtbx/validation/regression/tst_clashscore.py' adding 'mmtbx/validation/regression/tst_clashscore_2.py' adding 'mmtbx/validation/regression/tst_do_flips_clashscore.py' adding 'mmtbx/validation/regression/tst_experimental.py' adding 'mmtbx/validation/regression/tst_find_region_max_value.py' adding 'mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py' adding 'mmtbx/validation/regression/tst_keep_hydrogens.py' adding 'mmtbx/validation/regression/tst_model_properties.py' adding 'mmtbx/validation/regression/tst_molprobity_1.py' adding 'mmtbx/validation/regression/tst_molprobity_2.py' adding 'mmtbx/validation/regression/tst_molprobity_3.py' adding 'mmtbx/validation/regression/tst_molprobity_4.py' adding 'mmtbx/validation/regression/tst_molprobity_5.py' adding 'mmtbx/validation/regression/tst_molprobity_arguments.py' adding 'mmtbx/validation/regression/tst_mp_geo.py' adding 'mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py' adding 'mmtbx/validation/regression/tst_mp_geo_endtoend.py' adding 'mmtbx/validation/regression/tst_mp_validate_bonds.py' adding 'mmtbx/validation/regression/tst_omegalyze.py' adding 'mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py' adding 'mmtbx/validation/regression/tst_rama_z_01.py' adding 'mmtbx/validation/regression/tst_rama_z_02.py' adding 'mmtbx/validation/regression/tst_ramalyze.py' adding 'mmtbx/validation/regression/tst_ramalyze2.py' adding 'mmtbx/validation/regression/tst_ramalyze_rare.py' adding 'mmtbx/validation/regression/tst_restraints.py' adding 'mmtbx/validation/regression/tst_rna_validate.py' adding 'mmtbx/validation/regression/tst_rotalyze.py' adding 'mmtbx/validation/regression/tst_suitename.py' adding 'mmtbx/validation/regression/tst_symmetry_SS.py' adding 'mmtbx/validation/regression/tst_undowser.py' adding 'mmtbx/validation/regression/tst_undowser2.py' adding 'mmtbx/validation/regression/tst_utils.py' adding 'mmtbx/validation/regression/tst_waters.py' adding 'mmtbx/wwpdb/__init__.py' adding 'mmtbx/wwpdb/rcsb_entry_request.py' adding 'mmtbx/wwpdb/rcsb_web_services.py' adding 'mmtbx/wwpdb/tst_rcsb_entry_request.py' adding 'mmtbx/wwpdb/tst_rcsb_web_services.py' adding 'omptbx/__init__.py' adding 'omptbx/tst.py' adding 'qttbx/__init__.py' adding 'qttbx/phil.py' adding 'qttbx/qt.py' adding 'qttbx/run_tests.py' adding 'qttbx/examples/__init__.py' adding 'qttbx/examples/_helpers.py' adding 'qttbx/examples/data_manager_example.py' adding 'qttbx/examples/phil_widgets_example.py' adding 'qttbx/regression/__init__.py' adding 'qttbx/regression/tst_chat_agent_core.py' adding 'qttbx/regression/tst_chat_approval_coordinator.py' adding 'qttbx/regression/tst_chat_artifact_panel.py' adding 'qttbx/regression/tst_chat_auto_height.py' adding 'qttbx/regression/tst_chat_conversation_widgets.py' adding 'qttbx/regression/tst_chat_credentials_dialog.py' adding 'qttbx/regression/tst_chat_diagnostics.py' adding 'qttbx/regression/tst_chat_eliding.py' adding 'qttbx/regression/tst_chat_image.py' adding 'qttbx/regression/tst_chat_logging_setup.py' adding 'qttbx/regression/tst_chat_markdown.py' adding 'qttbx/regression/tst_chat_mcp_client.py' adding 'qttbx/regression/tst_chat_message_bubble.py' adding 'qttbx/regression/tst_chat_message_input.py' adding 'qttbx/regression/tst_chat_overlay_anchor.py' adding 'qttbx/regression/tst_chat_profile.py' adding 'qttbx/regression/tst_chat_question_card.py' adding 'qttbx/regression/tst_chat_runner.py' adding 'qttbx/regression/tst_chat_search.py' adding 'qttbx/regression/tst_chat_session.py' adding 'qttbx/regression/tst_chat_skills.py' adding 'qttbx/regression/tst_chat_storage.py' adding 'qttbx/regression/tst_chat_storage_session.py' adding 'qttbx/regression/tst_chat_subagent.py' adding 'qttbx/regression/tst_chat_subagent_view.py' adding 'qttbx/regression/tst_chat_tool_approval.py' adding 'qttbx/regression/tst_chat_tools.py' adding 'qttbx/regression/tst_chat_window_chrome.py' adding 'qttbx/regression/tst_data_manager_widget.py' adding 'qttbx/regression/tst_phil_widgets.py' adding 'qttbx/regression/tst_run_tests_manifest.py' adding 'qttbx/viewers/__init__.py' adding 'qttbx/viewers/chimerax.py' adding 'qttbx/widgets/__init__.py' adding 'qttbx/widgets/font_init.py' adding 'qttbx/widgets/chat/__init__.py' adding 'qttbx/widgets/chat/artifact.py' adding 'qttbx/widgets/chat/artifact_panel.py' adding 'qttbx/widgets/chat/auto_height.py' adding 'qttbx/widgets/chat/chat_top_bar.py' adding 'qttbx/widgets/chat/conversation_list.py' adding 'qttbx/widgets/chat/conversation_search.py' adding 'qttbx/widgets/chat/conversation_view.py' adding 'qttbx/widgets/chat/credentials_dialog.py' adding 'qttbx/widgets/chat/diagnostics.py' adding 'qttbx/widgets/chat/edge_rail.py' adding 'qttbx/widgets/chat/eliding.py' adding 'qttbx/widgets/chat/image_cache.py' adding 'qttbx/widgets/chat/image_lightbox.py' adding 'qttbx/widgets/chat/logging_setup.py' adding 'qttbx/widgets/chat/markdown_export.py' adding 'qttbx/widgets/chat/markdown_view.py' adding 'qttbx/widgets/chat/message_bubble.py' adding 'qttbx/widgets/chat/message_input.py' adding 'qttbx/widgets/chat/overlay_anchor.py' adding 'qttbx/widgets/chat/question_card.py' adding 'qttbx/widgets/chat/search_bar.py' adding 'qttbx/widgets/chat/tool_approval.py' adding 'qttbx/widgets/chat/tool_call_disclosure.py' adding 'qttbx/widgets/chat/agent/__init__.py' adding 'qttbx/widgets/chat/agent/approval.py' adding 'qttbx/widgets/chat/agent/base.py' adding 'qttbx/widgets/chat/agent/conversation.py' adding 'qttbx/widgets/chat/agent/errors.py' adding 'qttbx/widgets/chat/agent/events.py' adding 'qttbx/widgets/chat/agent/mcp_client.py' adding 'qttbx/widgets/chat/agent/paths.py' adding 'qttbx/widgets/chat/agent/profile.py' adding 'qttbx/widgets/chat/agent/runner.py' adding 'qttbx/widgets/chat/agent/session.py' adding 'qttbx/widgets/chat/agent/skills.py' adding 'qttbx/widgets/chat/agent/storage.py' adding 'qttbx/widgets/chat/agent/subagent.py' adding 'qttbx/widgets/chat/agent/tools.py' adding 'qttbx/widgets/data_manager/__init__.py' adding 'qttbx/widgets/data_manager/_binding_popup.py' adding 'qttbx/widgets/data_manager/_delegate.py' adding 'qttbx/widgets/data_manager/_phil_helpers.py' adding 'qttbx/widgets/data_manager/_table_model.py' adding 'qttbx/widgets/data_manager/widget.py' adding 'qttbx/widgets/phil/__init__.py' adding 'qttbx/widgets/phil/_colors.py' adding 'qttbx/widgets/phil/atom_selection.py' adding 'qttbx/widgets/phil/bool_widget.py' adding 'qttbx/widgets/phil/choice_widget.py' adding 'qttbx/widgets/phil/delegate.py' adding 'qttbx/widgets/phil/float_widget.py' adding 'qttbx/widgets/phil/floats_widget.py' adding 'qttbx/widgets/phil/int_widget.py' adding 'qttbx/widgets/phil/ints_widget.py' adding 'qttbx/widgets/phil/key_widget.py' adding 'qttbx/widgets/phil/multiple.py' adding 'qttbx/widgets/phil/path_widget.py' adding 'qttbx/widgets/phil/qstr_widget.py' adding 'qttbx/widgets/phil/space_group.py' adding 'qttbx/widgets/phil/str_widget.py' adding 'qttbx/widgets/phil/strings_widget.py' adding 'qttbx/widgets/phil/text_base.py' adding 'qttbx/widgets/phil/unit_cell.py' adding 'qttbx/widgets/phil/words_widget.py' adding 'rstbx/__init__.py' adding 'rstbx/run_tests.py' adding 'rstbx/utils.py' adding 'rstbx/apps/__init__.py' adding 'rstbx/apps/dual_resolution_helpers.py' adding 'rstbx/apps/slip_helpers.py' adding 'rstbx/apps/spot_markup.py' adding 'rstbx/apps/stills/__init__.py' adding 'rstbx/apps/stills/deltapsi_refinement_preceding_integration.py' adding 'rstbx/apps/stills/dials_refinement_preceding_integration.py' adding 'rstbx/apps/stills/simple_integration.py' adding 'rstbx/apps/stills/stills_integration.py' adding 'rstbx/apps/stills/util.py' adding 'rstbx/array_family/__init__.py' adding 'rstbx/array_family/flex.py' adding 'rstbx/bandpass/__init__.py' adding 'rstbx/bandpass/simulated_annealing.py' adding 'rstbx/bpcx/__init__.py' adding 'rstbx/bpcx/compare_mosflm_xds.py' adding 'rstbx/bpcx/ersatz_misset.py' adding 'rstbx/bpcx/uc1_2.py' adding 'rstbx/bpcx/uc1_2_positions.py' adding 'rstbx/bpcx/uc1_2_positions_idx.py' adding 'rstbx/bpcx/uc1_2_validate.py' adding 'rstbx/bpcx/uc1_2a.py' adding 'rstbx/bpcx/detector_model/__init__.py' adding 'rstbx/bpcx/detector_model/detector.py' adding 'rstbx/bpcx/detector_model/instrument_specifics.py' adding 'rstbx/bpcx/detector_model/tst_detector_model.py' adding 'rstbx/cftbx/__init__.py' adding 'rstbx/cftbx/coordinate_frame_converter.py' adding 'rstbx/cftbx/coordinate_frame_helpers.py' adding 'rstbx/cftbx/tst_coordinate_frame_converter.py' adding 'rstbx/command_line/__init__.py' adding 'rstbx/command_line/example_viewer.py' adding 'rstbx/command_line/index.py' adding 'rstbx/command_line/simage.create.py' adding 'rstbx/command_line/simage.explore_completeness.py' adding 'rstbx/command_line/simage.solver.py' adding 'rstbx/command_line/simage.wx_display.py' adding 'rstbx/command_line/slip_viewer.py' adding 'rstbx/command_line/viewer.py' adding 'rstbx/detectors/__init__.py' adding 'rstbx/detectors/silicon.py' adding 'rstbx/dials_core/__init__.py' adding 'rstbx/dials_core/integration_core.py' adding 'rstbx/diffraction/__init__.py' adding 'rstbx/diffraction/tst_ewald_sphere.py' adding 'rstbx/diffraction/tst_partial_derivatives.py' adding 'rstbx/diffraction/tst_predict.py' adding 'rstbx/diffraction/fastbragg/__init__.py' adding 'rstbx/diffraction/fastbragg/tst_bragg_minimal.py' adding 'rstbx/diffraction/fastbragg/tst_utils_clustering.py' adding 'rstbx/dps_core/__init__.py' adding 'rstbx/dps_core/basis_choice.py' adding 'rstbx/dps_core/cell_assessment.py' adding 'rstbx/dps_core/constrainment.py' adding 'rstbx/dps_core/lepage.py' adding 'rstbx/dps_core/sampling.py' adding 'rstbx/dps_core/tst_iotbx_converter.py' adding 'rstbx/dps_core/zuoreduction.py' adding 'rstbx/indexing/__init__.py' adding 'rstbx/indexing/do_index.py' adding 'rstbx/indexing/tst_auto_monoscan.py' adding 'rstbx/indexing/tst_dataset1.py' adding 'rstbx/indexing_api/__init__.py' adding 'rstbx/indexing_api/basis_choice.py' adding 'rstbx/indexing_api/force_cell.py' adding 'rstbx/indexing_api/lattice.py' adding 'rstbx/indexing_api/nearest_neighbor.py' adding 'rstbx/indexing_api/outlier_detection.py' adding 'rstbx/indexing_api/outlier_procedure.py' adding 'rstbx/indexing_api/sampling.py' adding 'rstbx/indexing_api/test_dps.py' adding 'rstbx/indexing_api/tools.py' adding 'rstbx/new_horizons/__init__.py' adding 'rstbx/new_horizons/index.py' adding 'rstbx/new_horizons/oscillation_shots.py' adding 'rstbx/new_horizons/pixel_spread.py' adding 'rstbx/new_horizons/speckfinder.py' adding 'rstbx/new_horizons/spot_shape.py' adding 'rstbx/new_horizons/stats_index.py' adding 'rstbx/outlier_spots/__init__.py' adding 'rstbx/outlier_spots/fit_distribution.py' adding 'rstbx/phil/__init__.py' adding 'rstbx/phil/phil_preferences.py' adding 'rstbx/phil/preferences.py' adding 'rstbx/phil/scope.py' adding 'rstbx/simage/__init__.py' adding 'rstbx/simage/create.py' adding 'rstbx/simage/explore_completeness.py' adding 'rstbx/simage/integrate_crude.py' adding 'rstbx/simage/refine_uc_cr.py' adding 'rstbx/simage/run_labelit_index.py' adding 'rstbx/simage/run_spotfinder.py' adding 'rstbx/simage/solver.py' adding 'rstbx/simage/tst.py' adding 'rstbx/simage/wx_display.py' adding 'rstbx/simulation/__init__.py' adding 'rstbx/simulation/constants.py' adding 'rstbx/simulation/sim_pdf.py' adding 'rstbx/simulation/sim_utils.py' adding 'rstbx/simulation/tst_xfel1_simple.py' adding 'rstbx/slip_viewer/__init__.py' adding 'rstbx/slip_viewer/calibration_frame.py' adding 'rstbx/slip_viewer/example_frame_plugin_hidden.py' adding 'rstbx/slip_viewer/frame.py' adding 'rstbx/slip_viewer/pyslip.py' adding 'rstbx/slip_viewer/ring_frame.py' adding 'rstbx/slip_viewer/score_frame.py' adding 'rstbx/slip_viewer/slip_display.py' adding 'rstbx/slip_viewer/slip_viewer_image_factory.py' adding 'rstbx/slip_viewer/tile_generation.py' adding 'rstbx/slip_viewer/uc_frame.py' adding 'rstbx/sublattice_support/__init__.py' adding 'rstbx/sublattice_support/change_basis.py' adding 'rstbx/sublattice_support/tst_sublattice.py' adding 'rstbx/symmetry/__init__.py' adding 'rstbx/symmetry/sgtbx_adaptor.py' adding 'rstbx/symmetry/subgroup.py' adding 'rstbx/symmetry/constraints/__init__.py' adding 'rstbx/symmetry/constraints/g_gradients.py' adding 'rstbx/symmetry/constraints/parameter_reduction.py' adding 'rstbx/viewer/__init__.py' adding 'rstbx/viewer/calibration.py' adding 'rstbx/viewer/calibration_frame.py' adding 'rstbx/viewer/controls.py' adding 'rstbx/viewer/dataset.py' adding 'rstbx/viewer/display.py' adding 'rstbx/viewer/drivers.py' adding 'rstbx/viewer/frame.py' adding 'rstbx/viewer/indexing.py' adding 'rstbx/viewer/integration.py' adding 'rstbx/viewer/pixels3d.py' adding 'rstbx/viewer/processing.py' adding 'rstbx/viewer/results_base.py' adding 'rstbx/viewer/spotfinder_frame.py' adding 'rstbx/viewer/spotfinder_wrap.py' adding 'rstbx/viewer/tst.py' adding 'scitbx/__init__.py' adding 'scitbx/cross_entropy.py' adding 'scitbx/cubicle_neighbors.py' adding 'scitbx/differential_evolution.py' adding 'scitbx/direct_search_simulated_annealing.py' adding 'scitbx/fftpack.py' adding 'scitbx/genetic_algorithm_with_mp.py' adding 'scitbx/golden_section_search.py' adding 'scitbx/lbfgsb.py' adding 'scitbx/libtbx_refresh.py' adding 'scitbx/minimizers.py' adding 'scitbx/minpack.py' adding 'scitbx/r3_utils.py' adding 'scitbx/regular_grid_on_unit_sphere.py' adding 'scitbx/restraints.py' adding 'scitbx/run_tests.py' adding 'scitbx/simplex.py' adding 'scitbx/smoothing.py' adding 'scitbx/array_family/__init__.py' adding 'scitbx/array_family/flex.py' adding 'scitbx/array_family/shared.py' adding 'scitbx/array_family/accessors/__init__.py' adding 'scitbx/array_family/boost_python/__init__.py' adding 'scitbx/array_family/boost_python/regression_test.py' adding 'scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py' adding 'scitbx/array_family/boost_python/tst_flex.py' adding 'scitbx/array_family/boost_python/tst_flex_argument_passing.py' adding 'scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py' adding 'scitbx/array_family/boost_python/tst_numpy_bridge.py' adding 'scitbx/array_family/boost_python/tst_shared.py' adding 'scitbx/array_family/boost_python/tst_smart_selection.py' adding 'scitbx/array_family/detail/__init__.py' adding 'scitbx/boost_python/__init__.py' adding 'scitbx/command_line/__init__.py' adding 'scitbx/command_line/apply_tapenade_hints.py' adding 'scitbx/command_line/generate_error_h.py' adding 'scitbx/command_line/histogram.py' adding 'scitbx/command_line/show_exp_times.py' adding 'scitbx/command_line/show_sizes.py' adding 'scitbx/command_line/unicode_examples.py' adding 'scitbx/dtmin/__init__.py' adding 'scitbx/dtmin/auxiliary.py' adding 'scitbx/dtmin/bounds.py' adding 'scitbx/dtmin/compulsory.py' adding 'scitbx/dtmin/min_logging.py' adding 'scitbx/dtmin/minimizer.py' adding 'scitbx/dtmin/optional.py' adding 'scitbx/dtmin/realsymmetricpseudoinverse.py' adding 'scitbx/dtmin/refinebase.py' adding 'scitbx/dtmin/reparams.py' adding 'scitbx/dtmin/twisted_gaussian.py' adding 'scitbx/dtmin/regression/__init__.py' adding 'scitbx/dtmin/regression/tst_dtmin_basic.py' adding 'scitbx/dtmin/regression/tst_dtmin_booth.py' adding 'scitbx/dtmin/regression/tst_dtmin_twisted.py' adding 'scitbx/error/__init__.py' adding 'scitbx/error/tst_error.py' adding 'scitbx/examples/__init__.py' adding 'scitbx/examples/bootstrap.py' adding 'scitbx/examples/chebyshev_lsq_example.py' adding 'scitbx/examples/flex_array_loops.py' adding 'scitbx/examples/flex_grid.py' adding 'scitbx/examples/functions.py' adding 'scitbx/examples/immoptibox_ports.py' adding 'scitbx/examples/integrating_a_weighted_sinc_function.py' adding 'scitbx/examples/lbfgs_linear_least_squares_fit.py' adding 'scitbx/examples/lbfgs_recipe.py' adding 'scitbx/examples/minimizer_comparisons.py' adding 'scitbx/examples/principal_axes_of_inertia.py' adding 'scitbx/examples/rigid_body_refinement_core.py' adding 'scitbx/examples/bevington/__init__.py' adding 'scitbx/examples/bevington/silver.py' adding 'scitbx/glmtbx/__init__.py' adding 'scitbx/glmtbx/boost_python/__init__.py' adding 'scitbx/glmtbx/tests/__init__.py' adding 'scitbx/glmtbx/tests/tst.py' adding 'scitbx/graph/__init__.py' adding 'scitbx/graph/rigidity.py' adding 'scitbx/graph/rigidity_matrix_symbolic.py' adding 'scitbx/graph/tardy_tree.py' adding 'scitbx/graph/test_cases_tardy_pdb.py' adding 'scitbx/graph/tst_rigidity.py' adding 'scitbx/graph/tst_tardy_tree.py' adding 'scitbx/graph/tst_tardy_tree_find_paths.py' adding 'scitbx/graph/tst_utils.py' adding 'scitbx/graph/utils.py' adding 'scitbx/graphics_utils/__init__.py' adding 'scitbx/graphics_utils/tst.py' adding 'scitbx/iso_surface/__init__.py' adding 'scitbx/iso_surface/tst_iso_surface.py' adding 'scitbx/lbfgs/__init__.py' adding 'scitbx/lbfgs/tst_curvatures.py' adding 'scitbx/lbfgs/tst_ext.py' adding 'scitbx/lbfgs/tst_func_free_line_search.py' adding 'scitbx/lbfgs/tst_lbfgs_fem.py' adding 'scitbx/lbfgs/tst_mpi_split_evaluator.py' adding 'scitbx/lbfgs/dev/__init__.py' adding 'scitbx/lbfgs/dev/run.py' adding 'scitbx/lbfgs/dev/twisted_gaussian.py' adding 'scitbx/linalg/__init__.py' adding 'scitbx/linalg/eigensystem.py' adding 'scitbx/linalg/ext.py' adding 'scitbx/linalg/householder.py' adding 'scitbx/linalg/svd.py' adding 'scitbx/linalg/boost_python/__init__.py' adding 'scitbx/linalg/tests/__init__.py' adding 'scitbx/linalg/tests/tst_cholesky.py' adding 'scitbx/linalg/tests/tst_eigensystem.py' adding 'scitbx/linalg/tests/tst_lapack_dsyev.py' adding 'scitbx/linalg/tests/tst_lapack_svd.py' adding 'scitbx/linalg/tests/tst_matrix.py' adding 'scitbx/linalg/tests/tst_svd.py' adding 'scitbx/line_search/__init__.py' adding 'scitbx/lstbx/__init__.py' adding 'scitbx/lstbx/normal_eqns.py' adding 'scitbx/lstbx/normal_eqns_solving.py' adding 'scitbx/lstbx/benchmarks/__init__.py' adding 'scitbx/lstbx/boost_python/__init__.py' adding 'scitbx/lstbx/tests/__init__.py' adding 'scitbx/lstbx/tests/test_problems.py' adding 'scitbx/lstbx/tests/tst_normal_equations.py' adding 'scitbx/math/__init__.py' adding 'scitbx/math/besselk.py' adding 'scitbx/math/breakpoint.py' adding 'scitbx/math/chebyshev_lsq_fit.py' adding 'scitbx/math/clustering.py' adding 'scitbx/math/cubic_spline.py' adding 'scitbx/math/curve_fitting.py' adding 'scitbx/math/des_3_100_13.py' adding 'scitbx/math/des_3_240_21.py' adding 'scitbx/math/distributions.py' adding 'scitbx/math/euler_angles.py' adding 'scitbx/math/ext.py' adding 'scitbx/math/farey.py' adding 'scitbx/math/fit_peak.py' adding 'scitbx/math/fit_quadratic_function.py' adding 'scitbx/math/fliege_mayer_400.py' adding 'scitbx/math/fliege_mayer_900.py' adding 'scitbx/math/fliege_mayer_900_ylm.py' adding 'scitbx/math/gaussian.py' adding 'scitbx/math/gaussian_fit.py' adding 'scitbx/math/gumbel.py' adding 'scitbx/math/incremental_SO3_sampling.py' adding 'scitbx/math/lefebvre.py' adding 'scitbx/math/minimum_covering_ellipsoid.py' adding 'scitbx/math/multiple_superposition.py' adding 'scitbx/math/periodogram.py' adding 'scitbx/math/scale_curves.py' adding 'scitbx/math/sieve_of_eratosthenes.py' adding 'scitbx/math/so3_lie_algebra.py' adding 'scitbx/math/spe.py' adding 'scitbx/math/sphere_sphere_intersection.py' adding 'scitbx/math/superpose.py' adding 'scitbx/math/tst_2d_zernike.py' adding 'scitbx/math/tst_bessel_zeros.py' adding 'scitbx/math/tst_multivariate_moments.py' adding 'scitbx/math/tst_so3_lie_algebra.py' adding 'scitbx/math/tst_undirected_graph.py' adding 'scitbx/math/tst_zernike.py' adding 'scitbx/math/tst_zernike_mom.py' adding 'scitbx/math/undirected_graph.py' adding 'scitbx/math/zernike_align_fft.py' adding 'scitbx/math/boost_python/__init__.py' adding 'scitbx/math/dev/__init__.py' adding 'scitbx/math/erf/__init__.py' adding 'scitbx/math/tests/__init__.py' adding 'scitbx/math/tests/tst_angle_derivative.py' adding 'scitbx/math/tests/tst_bessel.py' adding 'scitbx/math/tests/tst_clustering.py' adding 'scitbx/math/tests/tst_cubic_equation.py' adding 'scitbx/math/tests/tst_curve_fitting.py' adding 'scitbx/math/tests/tst_dmatrix.py' adding 'scitbx/math/tests/tst_error_propagation_matrix_inverse.py' adding 'scitbx/math/tests/tst_euler_angles.py' adding 'scitbx/math/tests/tst_exp_functions.py' adding 'scitbx/math/tests/tst_fit_peak.py' adding 'scitbx/math/tests/tst_fit_quadratic_function.py' adding 'scitbx/math/tests/tst_g_function.py' adding 'scitbx/math/tests/tst_gaussian.py' adding 'scitbx/math/tests/tst_gaussian_fit_1d_analytical.py' adding 'scitbx/math/tests/tst_gcd.py' adding 'scitbx/math/tests/tst_halton.py' adding 'scitbx/math/tests/tst_line_search.py' adding 'scitbx/math/tests/tst_math.py' adding 'scitbx/math/tests/tst_minimum_covering_ellipsoid.py' adding 'scitbx/math/tests/tst_orthonormal_basis.py' adding 'scitbx/math/tests/tst_periodogram.py' adding 'scitbx/math/tests/tst_quadrature.py' adding 'scitbx/math/tests/tst_r3_rotation.py' adding 'scitbx/math/tests/tst_resample.py' adding 'scitbx/math/tests/tst_similarity_indices.py' adding 'scitbx/math/tests/tst_superpose.py' adding 'scitbx/math/tests/tst_tetrahedron.py' adding 'scitbx/math/tests/tst_uniform_rotation_matrix.py' adding 'scitbx/math/tests/tst_weighted_correlation.py' adding 'scitbx/matrix/__init__.py' adding 'scitbx/matrix/row_echelon.py' adding 'scitbx/matrix/tests/__init__.py' adding 'scitbx/matrix/tests/tst_householder.py' adding 'scitbx/matrix/tests/tst_row_echelon.py' adding 'scitbx/misc/__init__.py' adding 'scitbx/python_utils/__init__.py' adding 'scitbx/python_utils/command_line.py' adding 'scitbx/python_utils/dicts.py' adding 'scitbx/python_utils/graph_tools.py' adding 'scitbx/python_utils/misc.py' adding 'scitbx/python_utils/random_transform.py' adding 'scitbx/python_utils/robust_statistics.py' adding 'scitbx/python_utils/signal_utils.py' adding 'scitbx/python_utils/tst_graph.py' adding 'scitbx/python_utils/tst_random_transform.py' adding 'scitbx/python_utils/tst_robust.py' adding 'scitbx/random/__init__.py' adding 'scitbx/random/boost_python/__init__.py' adding 'scitbx/random/tests/__init__.py' adding 'scitbx/random/tests/tst_random.py' adding 'scitbx/rigid_body/__init__.py' adding 'scitbx/rigid_body/tst.py' adding 'scitbx/rigid_body/essence/__init__.py' adding 'scitbx/rigid_body/essence/body_lib.py' adding 'scitbx/rigid_body/essence/featherstone.py' adding 'scitbx/rigid_body/essence/joint_lib.py' adding 'scitbx/rigid_body/essence/make_bundles.py' adding 'scitbx/rigid_body/essence/spatial_lib.py' adding 'scitbx/rigid_body/essence/tardy.py' adding 'scitbx/rigid_body/essence/tst_basic.py' adding 'scitbx/rigid_body/essence/tst_energy_plots.py' adding 'scitbx/rigid_body/essence/tst_tardy.py' adding 'scitbx/rigid_body/essence/wx_tardy.py' adding 'scitbx/rigid_body/proto/__init__.py' adding 'scitbx/rigid_body/proto/featherstone.py' adding 'scitbx/rigid_body/proto/free_motion_reference_impl.py' adding 'scitbx/rigid_body/proto/joint_lib.py' adding 'scitbx/rigid_body/proto/test_simulation.py' adding 'scitbx/rigid_body/proto/test_utils.py' adding 'scitbx/rigid_body/proto/tst_featherstone.py' adding 'scitbx/rigid_body/proto/tst_free_motion.py' adding 'scitbx/rigid_body/proto/tst_free_motion_hard.py' adding 'scitbx/rigid_body/proto/tst_joint_lib.py' adding 'scitbx/rigid_body/proto/tst_molecules.py' adding 'scitbx/rigid_body/proto/tst_singular.py' adding 'scitbx/rigid_body/proto/tst_spherical_refinement.py' adding 'scitbx/rigid_body/proto/utils.py' adding 'scitbx/rigid_body/proto/wx_free_motion.py' adding 'scitbx/rigid_body/proto/wx_joint_lib.py' adding 'scitbx/rigid_body/proto/wx_molecules.py' adding 'scitbx/serialization/__init__.py' adding 'scitbx/slatec/__init__.py' adding 'scitbx/source_generators/__init__.py' adding 'scitbx/source_generators/flex_fwd_h.py' adding 'scitbx/source_generators/lbfgs_fem.py' adding 'scitbx/source_generators/utils.py' adding 'scitbx/source_generators/array_family/__init__.py' adding 'scitbx/source_generators/array_family/generate_algebras.py' adding 'scitbx/source_generators/array_family/generate_all.py' adding 'scitbx/source_generators/array_family/generate_apply.py' adding 'scitbx/source_generators/array_family/generate_operator_functors.py' adding 'scitbx/source_generators/array_family/generate_operator_traits_builtin.py' adding 'scitbx/source_generators/array_family/generate_reductions.py' adding 'scitbx/source_generators/array_family/generate_std_imports.py' adding 'scitbx/source_generators/array_family/operator_functor_info.py' adding 'scitbx/sparse/__init__.py' adding 'scitbx/sparse/boost_python/__init__.py' adding 'scitbx/sparse/tests/__init__.py' adding 'scitbx/sparse/tests/tst_lu_factorization.py' adding 'scitbx/sparse/tests/tst_sparse.py' adding 'scitbx/stdlib/__init__.py' adding 'scitbx/stl/__init__.py' adding 'scitbx/stl/map.py' adding 'scitbx/stl/set.py' adding 'scitbx/stl/tst_map.py' adding 'scitbx/stl/tst_set.py' adding 'scitbx/stl/tst_vector.py' adding 'scitbx/stl/vector.py' adding 'scitbx/suffixtree/__init__.py' adding 'scitbx/suffixtree/single.py' adding 'scitbx/suffixtree/boost_python/__init__.py' adding 'scitbx/suffixtree/test/__init__.py' adding 'scitbx/suffixtree/test/tst_single.py' adding 'scitbx/tests/__init__.py' adding 'scitbx/tests/differential_evolution.py' adding 'scitbx/tests/direct_search_simulated_annealing.py' adding 'scitbx/tests/golden_section_search.py' adding 'scitbx/tests/simplex.py' adding 'scitbx/tests/tst_basic.py' adding 'scitbx/tests/tst_cubicle_neighbors.py' adding 'scitbx/tests/tst_genetic_algorithm_with_mp.py' adding 'scitbx/tests/tst_minimizer_lbfgs_general.py' adding 'scitbx/tests/tst_r3_utils.py' adding 'scitbx/tests/tst_regular_grid_on_unit_sphere.py' adding 'scitbx/tests/tst_smoothing.py' adding 'scitbx/wigner/__init__.py' adding 'scitbx/wigner/tst_wigner3j.py' adding 'serialtbx/__init__.py' adding 'serialtbx/detector/__init__.py' adding 'serialtbx/detector/cspad.py' adding 'serialtbx/detector/jungfrau.py' adding 'serialtbx/detector/rayonix.py' adding 'serialtbx/detector/xtc.py' adding 'serialtbx/detector/legacy_metrology/__init__.py' adding 'serialtbx/detector/legacy_metrology/cspad_detector.py' adding 'serialtbx/detector/legacy_metrology/generic_detector.py' adding 'serialtbx/detector/legacy_metrology/metrology.py' adding 'serialtbx/mono_simulation/__init__.py' adding 'serialtbx/mono_simulation/max_like.py' adding 'serialtbx/mono_simulation/util.py' adding 'serialtbx/util/__init__.py' adding 'serialtbx/util/construct_frame.py' adding 'serialtbx/util/energy_scan_notch_finder.py' adding 'serialtbx/util/time.py' adding 'simtbx/__init__.py' adding 'simtbx/run_tests.py' adding 'simtbx/diffBragg/__init__.py' adding 'simtbx/diffBragg/attr_list.py' adding 'simtbx/diffBragg/device.py' adding 'simtbx/diffBragg/ensemble_refine_launcher.py' adding 'simtbx/diffBragg/hopper_ensemble_utils.py' adding 'simtbx/diffBragg/hopper_io.py' adding 'simtbx/diffBragg/hopper_utils.py' adding 'simtbx/diffBragg/mpi_logger.py' adding 'simtbx/diffBragg/parameter_errors.py' adding 'simtbx/diffBragg/phil.py' adding 'simtbx/diffBragg/prep_stage2_input.py' adding 'simtbx/diffBragg/psf.py' adding 'simtbx/diffBragg/stage_two_utils.py' adding 'simtbx/diffBragg/utils.py' adding 'simtbx/diffBragg/refiners/__init__.py' adding 'simtbx/diffBragg/refiners/base_refiner.py' adding 'simtbx/diffBragg/refiners/geometry.py' adding 'simtbx/diffBragg/refiners/parameters.py' adding 'simtbx/diffBragg/refiners/stage_two_refiner.py' adding 'simtbx/diffBragg/refiners/crystal_systems/__init__.py' adding 'simtbx/diffBragg/refiners/crystal_systems/hexagonal.py' adding 'simtbx/diffBragg/refiners/crystal_systems/manager.py' adding 'simtbx/diffBragg/refiners/crystal_systems/monoclinic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/tetragonal.py' adding 'simtbx/gpu/__init__.py' adding 'simtbx/gpu/tst_exafel_api.py' adding 'simtbx/gpu/tst_gpu_multisource_background.py' adding 'simtbx/gpu/tst_shoeboxes.py' adding 'simtbx/kokkos/__init__.py' adding 'simtbx/kokkos/tst_kokkos_lib.py' adding 'simtbx/modeling/FormatHDF5AttributeGeometry.py' adding 'simtbx/modeling/__init__.py' adding 'simtbx/modeling/forward_models.py' adding 'simtbx/modeling/predictions.py' adding 'simtbx/nanoBragg/__init__.py' adding 'simtbx/nanoBragg/anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/nanoBragg_beam.py' adding 'simtbx/nanoBragg/nanoBragg_crystal.py' adding 'simtbx/nanoBragg/nanoBragg_gui_dialogs.py' adding 'simtbx/nanoBragg/nanoBragg_gui_frames.py' adding 'simtbx/nanoBragg/nanoBragg_gui_init.py' adding 'simtbx/nanoBragg/nanoBragg_input.py' adding 'simtbx/nanoBragg/nanoBragg_threads.py' adding 'simtbx/nanoBragg/sim_data.py' adding 'simtbx/nanoBragg/tst_anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/tst_gauss_argchk.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity2.py' adding 'simtbx/nanoBragg/tst_multisource_background.py' adding 'simtbx/nanoBragg/tst_nanoBragg_basic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_cbf_write.py' adding 'simtbx/nanoBragg/tst_nanoBragg_minimal.py' adding 'simtbx/nanoBragg/tst_nanoBragg_mosaic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_multipanel.py' adding 'simtbx/nanoBragg/tst_nanoBragg_pilatus.py' adding 'simtbx/nanoBragg/utils.py' adding 'simtbx/pixel/__init__.py' adding 'smtbx/__init__.py' adding 'smtbx/development.py' adding 'smtbx/libtbx_refresh.py' adding 'smtbx/run_tests.py' adding 'smtbx/utils.py' adding 'smtbx/ab_initio/__init__.py' adding 'smtbx/ab_initio/charge_flipping.py' adding 'smtbx/ab_initio/tests/__init__.py' adding 'smtbx/ab_initio/tests/tst_ab_initio_ext.py' adding 'smtbx/ab_initio/tests/tst_charge_flipping.py' adding 'smtbx/absolute_structure/__init__.py' adding 'smtbx/array_family/__init__.py' adding 'smtbx/command_line/__init__.py' adding 'smtbx/command_line/absolute_structure.py' adding 'smtbx/command_line/anom_refine.py' adding 'smtbx/command_line/benchmark_refinement.py' adding 'smtbx/command_line/masks.py' adding 'smtbx/command_line/refine.py' adding 'smtbx/masks/__init__.py' adding 'smtbx/refinement/__init__.py' adding 'smtbx/refinement/least_squares.py' adding 'smtbx/refinement/weighting_schemes.py' adding 'smtbx/refinement/constraints/__init__.py' adding 'smtbx/refinement/constraints/adp.py' adding 'smtbx/refinement/constraints/all.py' adding 'smtbx/refinement/constraints/fpfdp.py' adding 'smtbx/refinement/constraints/occupancy.py' adding 'smtbx/refinement/constraints/rigid.py' adding 'smtbx/refinement/constraints/site.py' adding 'smtbx/refinement/constraints/geometrical/__init__.py' adding 'smtbx/refinement/constraints/geometrical/all.py' adding 'smtbx/refinement/constraints/geometrical/hydrogens.py' adding 'smtbx/refinement/constraints/tests/__init__.py' adding 'smtbx/refinement/constraints/tests/tst_constrained_structure.py' adding 'smtbx/refinement/constraints/tests/tst_direction.py' adding 'smtbx/refinement/constraints/tests/tst_disorder.py' adding 'smtbx/refinement/constraints/tests/tst_lbfgs.py' adding 'smtbx/refinement/constraints/tests/tst_occupancies.py' adding 'smtbx/refinement/constraints/tests/tst_reparametrisation.py' adding 'smtbx/refinement/constraints/tests/tst_rigid.py' adding 'smtbx/refinement/constraints/tests/tst_same_group.py' adding 'smtbx/refinement/restraints/__init__.py' adding 'smtbx/refinement/restraints/adp_restraints.py' adding 'smtbx/refinement/restraints/origin_fixing_restraints.py' adding 'smtbx/regression/__init__.py' adding 'smtbx/regression/tst_commandline_anomrefine.py' adding 'smtbx/regression/tst_commandline_refine.py' adding 'smtbx/regression/test_data/__init__.py' adding 'smtbx/source_generators/__init__.py' adding 'smtbx/source_generators/flex_fwd_h.py' adding 'smtbx/stl/__init__.py' adding 'smtbx/stl/map.py' adding 'smtbx/structure_factors/__init__.py' adding 'smtbx/structure_factors/direct/__init__.py' adding 'spotfinder/__init__.py' adding 'spotfinder/exception.py' adding 'spotfinder/run_tests.py' adding 'spotfinder/applications/__init__.py' adding 'spotfinder/applications/image_viewer.py' adding 'spotfinder/applications/practical_heuristics.py' adding 'spotfinder/applications/signal_strength.py' adding 'spotfinder/applications/stats_distl.py' adding 'spotfinder/applications/wrappers.py' adding 'spotfinder/applications/heuristic_tbx/__init__.py' adding 'spotfinder/applications/heuristic_tbx/ice2.py' adding 'spotfinder/applications/heuristic_tbx/ice_nztt.py' adding 'spotfinder/applications/heuristic_tbx/method2_resolution.py' adding 'spotfinder/applications/heuristic_tbx/spotreporter.py' adding 'spotfinder/applications/xfel/__init__.py' adding 'spotfinder/applications/xfel/correction_vector_plot.py' adding 'spotfinder/applications/xfel/cxi_phil.py' adding 'spotfinder/applications/xfel/cxi_run3.py' adding 'spotfinder/array_family/__init__.py' adding 'spotfinder/array_family/flex.py' adding 'spotfinder/command_line/__init__.py' adding 'spotfinder/command_line/find_active_area.py' adding 'spotfinder/command_line/image_viewer.py' adding 'spotfinder/command_line/mp_spotfinder_server_read_file.py' adding 'spotfinder/command_line/signal_strength.py' adding 'spotfinder/command_line/sweep_strength.py' adding 'spotfinder/command_line/thin_client.py' adding 'spotfinder/core_toolbox/__init__.py' adding 'spotfinder/core_toolbox/close_spots_detail.py' adding 'spotfinder/diffraction/__init__.py' adding 'spotfinder/diffraction/geometry.py' adding 'spotfinder/diffraction/imagefiles.py' adding 'spotfinder/dxtbx_toolbox/__init__.py' adding 'spotfinder/dxtbx_toolbox/practical_heuristics.py' adding 'spotfinder/math_support/__init__.py' adding 'spotfinder/math_support/sphere_formulae.py' adding 'spotfinder/servers/__init__.py' adding 'spotfinder/servers/adsc_client.py' adding 'spotfinder/servers/apache.py' adding 'spotfinder/servers/apache_bcsb.py' adding 'spotfinder/servers/apache_dials.py' adding 'spotfinder/servers/apache_utils.py' adding 'spotfinder/servers/bcsb_client_example.py' adding 'spotfinder/servers/general_client_example.py' adding 'spotfinder/servers/mp_spotfinder_server_is_alive.py' adding 'spotfinder/servers/mp_spotfinder_server_read_file.py' adding 'spotfinder/servers/multipart_encoder.py' adding 'spotfinder/servers/pilatus_client.py' adding 'spotfinder/servers/specific_client_example.py' adding 'spotfinder/servers/spotfinder_server_client_push.py' adding 'spotfinder/servers/spotfinder_server_read_file.py' adding 'spotfinder/servers/thin_client.py' adding 'wxtbx/__init__.py' adding 'wxtbx/adp_statistics.py' adding 'wxtbx/anomalous_scattering.py' adding 'wxtbx/app.py' adding 'wxtbx/b_plot.py' adding 'wxtbx/bitmaps.py' adding 'wxtbx/browser.py' adding 'wxtbx/checklistctrl.py' adding 'wxtbx/custom_restraints.py' adding 'wxtbx/ensemble_validation.py' adding 'wxtbx/errors.py' adding 'wxtbx/heavy_atoms.py' adding 'wxtbx/icons.py' adding 'wxtbx/info_panels.py' adding 'wxtbx/layout.py' adding 'wxtbx/listeditor.py' adding 'wxtbx/metallicbutton.py' adding 'wxtbx/misc_dialogs.py' adding 'wxtbx/monitor.py' adding 'wxtbx/mtz_dump.py' adding 'wxtbx/path_dialogs.py' adding 'wxtbx/pdb_editor.py' adding 'wxtbx/polygon.py' adding 'wxtbx/polygon_db_viewer.py' adding 'wxtbx/process_control.py' adding 'wxtbx/qstat_view.py' adding 'wxtbx/run_tests.py' adding 'wxtbx/segmentedctrl.py' adding 'wxtbx/sequence_view.py' adding 'wxtbx/symmetry_dialog.py' adding 'wxtbx/tables.py' adding 'wxtbx/utils.py' adding 'wxtbx/windows.py' adding 'wxtbx/xtriage.py' adding 'wxtbx/command_line/__init__.py' adding 'wxtbx/command_line/anomalous_differences_histogram.py' adding 'wxtbx/command_line/b_plot.py' adding 'wxtbx/command_line/inspect_r_free_flags.py' adding 'wxtbx/command_line/loggraph.py' adding 'wxtbx/command_line/pdb_editor.py' adding 'wxtbx/command_line/pdb_statistics.py' adding 'wxtbx/command_line/plan_sad_experiment.py' adding 'wxtbx/command_line/plot_anomalous_scattering.py' adding 'wxtbx/command_line/show_file_info.py' adding 'wxtbx/command_line/wxpython.py' adding 'wxtbx/command_line/xtriage.py' adding 'wxtbx/phil_controls/__init__.py' adding 'wxtbx/phil_controls/array_label.py' adding 'wxtbx/phil_controls/boolctrl.py' adding 'wxtbx/phil_controls/choice.py' adding 'wxtbx/phil_controls/choice_multi.py' adding 'wxtbx/phil_controls/floatctrl.py' adding 'wxtbx/phil_controls/floats.py' adding 'wxtbx/phil_controls/intctrl.py' adding 'wxtbx/phil_controls/ints.py' adding 'wxtbx/phil_controls/misc_ctrls.py' adding 'wxtbx/phil_controls/numbers.py' adding 'wxtbx/phil_controls/path.py' adding 'wxtbx/phil_controls/simple_dialogs.py' adding 'wxtbx/phil_controls/space_group.py' adding 'wxtbx/phil_controls/strctrl.py' adding 'wxtbx/phil_controls/strings.py' adding 'wxtbx/phil_controls/symop.py' adding 'wxtbx/phil_controls/text_base.py' adding 'wxtbx/phil_controls/tree.py' adding 'wxtbx/phil_controls/tribool.py' adding 'wxtbx/phil_controls/unit_cell.py' adding 'wxtbx/plots/__init__.py' adding 'wxtbx/plots/emringer.py' adding 'wxtbx/plots/molprobity.py' adding 'wxtbx/regression/__init__.py' adding 'wxtbx/regression/_headless_construct_cases.py' adding 'wxtbx/regression/_warnings.py' adding 'wxtbx/regression/tst_headless_construct.py' adding 'wxtbx/regression/tst_imports.py' adding 'wxtbx/regression/tst_process_control.py' adding 'wxtbx/reports/__init__.py' adding 'wxtbx/reports/blast.py' adding 'wxtbx/reports/pdb_symmetry.py' adding 'xcif/__init__.py' adding 'xcif/run_tests.py' adding 'xcif/benchmarks/__init__.py' adding 'xcif/benchmarks/run_benchmarks.py' adding 'xcif/regression/__init__.py' adding 'xcif/regression/tst_api_compat.py' adding 'xcif/regression/tst_bindings.py' adding 'xcif/regression/tst_example_parse.py' adding 'xcif/regression/tst_example_tokenize.py' adding 'xcif/regression/tst_gil_release.py' adding 'xcif/regression/tst_iotbx_cif_reader_engine.py' adding 'xcif/regression/tst_iotbx_cif_reader_parity.py' adding 'xcif/regression/tst_memory.py' adding 'xcif/regression/tst_non_strict_mode.py' adding 'xcif/regression/tst_parse_verify.py' adding 'xcif/regression/tst_pdb_coordinates.py' adding 'xcif/regression/tst_pdb_sf.py' adding 'xcif/regression/tst_quoted_string_delimiter.py' adding 'xcif/regression/tst_roundtrip.py' adding 'xcif/regression/tst_semicolon_field_strict.py' adding 'xcif/regression/tst_string_interning.py' adding 'xcif/regression/tst_utf8.py' adding 'cctbx-2023.12.dist-info/METADATA' adding 'cctbx-2023.12.dist-info/WHEEL' adding 'cctbx-2023.12.dist-info/top_level.txt' adding 'cctbx-2023.12.dist-info/RECORD' removing build/bdist.linux-ppc64le/wheel Successfully built cctbx-2023.12-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module dh_auto_build --sourcedirectory=dxtbx -- --name dxtbx pybuild --build -i python{version} -p 3.14 --name dxtbx --dir dxtbx --parallel=8 I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_dxtbx * Building wheel... Successfully built dxtbx-3.30.0-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module dh_auto_build -- --name cctbx -s custom --build-args="cd {build_dir}_ && ./bin/libtbx.scons -j 8" pybuild --build -i python{version} -p 3.14 --name cctbx -s custom --build-args="cd {build_dir}_ && ./bin/libtbx.scons -j 8" --parallel=8 I: pybuild base:385: cd '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && ./bin/libtbx.scons -j 8 scons: Reading SConscript files ... libtbx.scons: using flags from initial environment: CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -lhdf5_serial libtbx.scons: OpenMP is disabled. BOOST_PYTHON_LIB_VERSION: boost_python314 BOOST_NUMPY_LIB_VERSION: boost_numpy314 BOOST_VERSION: 109000 Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cbflib.tst_memory' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.getting_started' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.sym_equiv_sites' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.convert_ccp4_symop_lib' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.lattice_symmetry' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.find_distances' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.sys_abs_equiv_space_groups' scons: done reading SConscript files. scons: Building targets ... g++ -o annlib_adaptbx/ann/ann_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -Iannlib_adaptbx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/src -Iannlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/ann/ann_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o annlib_adaptbx/ann/boost_python/annlib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/usr/include/python3.14 -Iannlib_adaptbx/ann/boost_python/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/ann/boost_python/src -Iannlib_adaptbx/ann/boost_python/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/ann/boost_python/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/ann/boost_python/annlib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/blobs_cmd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/blobs_cmd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/asymmetric_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/asymmetric_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/skeletons.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/skeletons.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/dijkstra.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/dijkstra.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_reader.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/xplor/map_reader.cpp g++ -o iotbx/xplor/map_writer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/xplor/map_writer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/direct_space_asu/proto/cut.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libiotbx_xplor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_xplor.so.0 iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lm g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so.0'->'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so'->'lib/libiotbx_xplor.so.0.0.1' g++ -o cctbx/eltbx/basic.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/basic.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering/it1992.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering/wk1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering/n_gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/fp_fdp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/fp_fdp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/henke.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_73_84.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_73_84.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_85_92.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_85_92.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/icsd_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/icsd_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/covalent_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/covalent_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/neutron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/neutron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/sasaki.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_73_82.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/tiny_pse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/tiny_pse.cpp g++ -o cctbx/eltbx/wavelengths.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/wavelengths.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/electron_scattering/peng1996.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/electron_scattering/peng1996.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/attenuation_coefficient.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/attenuation_coefficient.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/index_generator.cpp g++ -o cctbx/miller/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/bricks.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/bricks.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/change_of_basis_op.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/group_codes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/group_codes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/hall_in.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/hall_in.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_tr.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/lattice_tr.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/miller.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/miller.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/reciprocal_space_ref_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rot_mx_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/row_echelon_solve.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/row_echelon_solve.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/reference_settings/normalizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/reference_settings/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/uctbx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx/uctbx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/spoil_optimization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx/spoil_optimization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/crystal_orientation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx/crystal_orientation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o omptbx/stubs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/omptbx/stubs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libomptbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libomptbx.so.0 omptbx/stubs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread Create symlinks for: 'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so.0'->'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so'->'lib/libomptbx.so.0.0.1' g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcctbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libcctbx.so.0 cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lm Create symlinks for: 'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so.0'->'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so'->'lib/libcctbx.so.0.0.1' g++ -o boost_adaptbx/graph/metric_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/metric_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/metric_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/utility_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/utility_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/hybrid_times_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/hybrid_times_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/meta_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/meta_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/graph/utility_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/optional_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/optional_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/rational_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/rational_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/std_pair_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/std_pair_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/boost_thread_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/tests/boost_thread_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/tests/python_streambuf_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/tests/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread boost_adaptbx/tests/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o boost_adaptbx/tuple_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/boost_adaptbx/tuple_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSWIG_PYTHON_STRICT_BYTE_CHAR -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx/detectors/boost_python/cbflib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/buffer_based_service.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx/detectors/buffer_based_service.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx/detectors/cbf_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/mar_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx/detectors/mar_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/tst_memory.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCBF_NO_REGEX -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx/detectors/tst_memory.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ccp4io_adaptbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ccp4io -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ccp4io_adaptbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o ccp4io_adaptbx/fortran_call_stubs.o -c -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ccp4io_adaptbx/fortran_call_stubs.c gcc -o ccp4io_adaptbx/printf_wrappers.o -c -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ccp4io_adaptbx/printf_wrappers.c g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adp_restraints/adp_restraints_bpl.cpp g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adp_restraints/adp_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adp_restraints/adp_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adp_restraints/aniso_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcctbx_sgtbx_asu.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libcctbx_sgtbx_asu.so.0 cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lm Create symlinks for: 'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so.0'->'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so'->'lib/libcctbx_sgtbx_asu.so.0.0.1' g++ -o lib/libasymmetric_map.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libasymmetric_map.so.0 cctbx/maptbx/asymmetric_map.o cctbx/maptbx/skeletons.o cctbx/maptbx/dijkstra.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm Create symlinks for: 'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so.0'->'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so'->'lib/libasymmetric_map.so.0.0.1' g++ -o bin/cctbx_blobs -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/maptbx/blobs_cmd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adp_restraints/isotropic_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adp_restraints/rigid_bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/rigu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adp_restraints/rigu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adptbx/boost_python/adptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/anharmonic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adptbx/boost_python/anharmonic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/adptbx/boost_python/hirshfeld.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/array_family/boost_python/flex_miller_index.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/array_family/boost_python/flex_xray_scatterer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/emma_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/boost_python/emma_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/french_wilson_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/boost_python/french_wilson_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/orientation_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/boost_python/orientation_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/statistics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/boost_python/statistics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/covariance/boost_python/covariance_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/asu_clusters_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/asu_clusters_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/close_packing_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/close_packing_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/coordination_sequences_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/crystal_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/crystal_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/direct_space_asu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/incremental_pairs_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/neighbors_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/neighbors_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/pair_tables_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/pair_tables_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/site_cluster_analysis_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/symmetry_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/symmetry_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/dmtbx/boost_python/dmtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/dmtbx/boost_python/triplet_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/chemical_elements_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/covalent_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/fp_fdp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/henke_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/icsd_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/neutron_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/sasaki_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/tiny_pse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/wavelengths_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/boost_python/xray_scattering_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples/convert_ccp4_symop_lib.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/find_distances.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples/find_distances.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/getting_started.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples/getting_started.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/examples/sys_abs_equiv_space_groups.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry/boost_python/geometry_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/angle_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/angle.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:13: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::angle_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:75:65: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_angle_proxy") | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_misc.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:14: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:10: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::map; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:129:23: required from here 129 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 130 | "bond_params_table") | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:232:25: required from here 232 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 233 | "shared_bond_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:340:25: required from here 340 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 341 | "shared_bond_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_similarity.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:12: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_similarity.h:84:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for(int i=0;i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_similarity.h:108:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 108 | for(int i=0;i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:9: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_similarity_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:55:44: required from here 54 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | bond_similarity_proxy, rir>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | "shared_bond_similarity_proxy"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny, 2>; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:79:54: required from here 78 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 | af::tiny, 2>, rbv>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 80 | "sites_array"); | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/chirality_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/dihedral_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_sorted.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp:9: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/tuple.hpp:10, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/shared_wrapper_pickle.hpp:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:2: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/geometry_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/direct_space_asu.h: In instantiation of ‘int cctbx::crystal::direct_space_asu::asu_mappings::find_i_sym(unsigned int, const cctbx::sgtbx::rt_mx&) const [with FloatType = double; IntShiftType = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/pair_tables.h:643:46: required from ‘bool cctbx::crystal::pair_asu_table::process_pair(unsigned int, unsigned int, const cctbx::sgtbx::rt_mx&) [with FloatType = double; IntShiftType = int]’ 643 | int j_sym = asu_mappings_->find_i_sym(j_seq, rt_mx_j); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/pair_tables.h:543:35: required from ‘cctbx::crystal::pair_asu_table& cctbx::crystal::pair_asu_table::add_pair(const scitbx::af::tiny&) [with FloatType = double; IntShiftType = int]’ 543 | bool is_new = process_pair(i_seqs[0], i_seqs[1], rt_mx_ji); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond_sorted.h:16:30: required from here 16 | pair_asu_table.add_pair(bond_simple_proxies[i].i_seqs); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/direct_space_asu.h:859:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 859 | for(int i_sym=0; i_sym, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 869 | for(int i_sym=0; i_sym::get() [with ElementType = scitbx::af::tiny, 2>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:26:32: warning: ‘’ is used uninitialized [-Wuninitialized] 26 | get() { return ElementType(); } | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:26:20: note: ‘’ declared here 26 | get() { return ElementType(); } | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/chirality.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:13: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::chirality_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:75:60: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_chirality_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:12: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = dihedral_proxy]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:110:17: required from here 110 | shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::dihedral_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:84:65: required from here 84 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 85 | "shared_dihedral_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:10: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:92:25: required from here 92 | shared_w_t::wrap("shared_nonbonded_simple_proxy") | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:125:25: required from here 125 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 126 | "shared_nonbonded_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/parallelity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/planarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:8: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::parallelity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp:82:60: required from here 82 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 83 | "shared_parallelity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/neighbors_fast.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/pair_tables.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = cctbx::cartesian; CubicleContentType = std::vector; FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/neighbors_fast.h:77:34: required from ‘cctbx::crystal::neighbors::fast_pair_generator::fast_pair_generator(const boost::shared_ptr >&, const FloatType&, bool, const FloatType&, const FloatType&) [with FloatType = double; IntShiftType = int]’ 77 | cubicles_.i_cubicle(mappings[mi.i_seq][mi.i_sym].mapped_site())); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:80:27: required from here 80 | min_cubicle_edge); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::planarity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:62:23: required from here 62 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 63 | "shared_planarity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/asymmetric_map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/bcr/bcr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/bcr/bcr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/boost_python/coordinate_transformers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/boost_python/grid_tags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/gridding.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/boost_python/gridding.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/boost_python/maptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/misc.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/boost_python/misc.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/peak_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/boost_python/peak_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/boost_python/pymol_interface.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/boost_python/statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/maptbx/boost_python/structure_factors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/masks/boost_python/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/masks/boost_python/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/math/time_trigonometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/merging/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/merging/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/math/time_trigonometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lboost_thread -lboost_timer -lm g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/amplitude_normalisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/change_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/change_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/expand_to_p1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/f_calc_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/f_calc_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/lookup_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/lookup_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/merge_equivalents.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/miller_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/miller_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_integrator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/phase_integrator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_transfer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/phase_transfer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/randomize_amplitude_and_phase.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/randomize_amplitude_and_phase.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/slices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/slices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/boost_python/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/multipolar/aspherical_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/multipolar/aspherical_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/brick.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/brick.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/change_of_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/phase_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/search_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/sgtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/tensors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/boost_python/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/translation_search/boost_python/fast_nv1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/translation_search/boost_python/fast_terms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/translation_search/boost_python/symmetry_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lm g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/translation_search/boost_python/translation_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/niggli_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx/boost_python/niggli_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx/boost_python/uctbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/determine_unit_cell/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_SINGLEFILE_NCDIST -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx/determine_unit_cell/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/conversions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/conversions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/curvatures_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/each_hkl_gradients_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/extinction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/extinction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/f_model_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/fast_gradients.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/fast_gradients.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/curvatures_simple.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/curvatures_simple.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/gradients_direct.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/each_hkl_gradients_direct.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/gradient_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/gradient_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/fast_gradients.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/fast_gradients.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/f_model.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/f_model.h: In instantiation of ‘cctbx::xray::f_model_core_data::f_model_core_data cctbx::xray::f_model_core_data::f_model_core_data::select(const scitbx::af::const_ref&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/f_model_bpl.cpp:174:32: required from here 174 | .def("select", &w_t::select) | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/f_model.h:732:38: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 732 | CCTBX_ASSERT( iselection[ii]::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h:14, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sampling_base.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/sampling_base.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h:257:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for (long int ii=0;ii::r_abs() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:69:31: required from here 69 | .def("r_abs", &w_t::r_abs) | ^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h:271:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for (long int ii=0;ii cctbx::xray::grouped_data::merger::combine_obs(long int) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h:258:24: required from ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’ 258 | tmp_result = combine_obs( ii ); | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h:213:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 213 | for (int ii=1;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int ii=1;ii::unmerged_data(scitbx::af::const_ref >, scitbx::af::const_ref >, const cctbx::sgtbx::space_group&, const bool&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::unmerged_data; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<4>::apply::execute(PyObject*, t0, t1, t2, t3) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; W = cctbx::xray::grouped_data::unmerged_data; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:27:15: required from here 26 | class_("unmerged_data", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | bool const& | ~~~~~~~~~~~ 31 | > | ~ 32 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 33 | arg("asu_hkl"), | ~~~~~~~~~~~~~~~ 34 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 35 | arg("anomalous_flag") ))) | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h:54:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 54 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for (int ii=0; ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h:67:11: note: in expansion of macro ‘CCTBX_ASSERT’ 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘cctbx::xray::grouped_data::merger::merger(scitbx::af::const_ref >, scitbx::af::const_ref, scitbx::af::const_ref, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::merger; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref&; t2 = const scitbx::af::const_ref&; t3 = const cctbx::sgtbx::space_group&; t4 = const bool&; t5 = const cctbx::uctbx::unit_cell&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; W = cctbx::xray::grouped_data::merger; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:54:15: required from here 53 | class_("merger", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 | cctbx::uctbx::unit_cell const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | > | ~ 61 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 62 | arg("i_obs"), | ~~~~~~~~~~~~~ 63 | arg("s_obs"), | ~~~~~~~~~~~~~ 64 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 65 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 66 | arg("unit_cell") | ~~~~~~~~~~~~~~~~ 67 | ))) | ~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/grouped_data.h:151:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 151 | for (int ii=0;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 167 | for (int ii=0; ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/parameter_map.cpp:10: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/sampled_model_density.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/sampled_model_density.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::init_scatterer_part(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/parameter_map.h:54:7: required from ‘cctbx::xray::parameter_map::parameter_map(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’ 54 | init_scatterer_part(scatterers); | ^~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0) [with A0 = boost::python::objects::reference_to_value, scitbx::af::trivial_accessor>&>; Value = cctbx::xray::parameter_map >; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<1>::apply::execute(PyObject*, t0) [with Holder = boost::python::objects::value_holder > >; ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; PyObject = _object; t0 = const scitbx::af::const_ref, scitbx::af::trivial_accessor>&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; Arity = boost::mpl::size, scitbx::af::trivial_accessor>&> >; Holder = boost::python::objects::value_holder > >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = cctbx::xray::parameter_map >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/parameter_map.cpp:46:11: required from ‘static void cctbx::xray::boost_python::parameter_map_wrapper::wrap(const char*) [with XRayScattererType = cctbx::xray::scatterer<>]’ 45 | class_("parameter_map", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 | .def(init const &>(( | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 | arg("scatterers")))) | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/parameter_map.cpp:60:50: required from here 60 | parameter_map_wrapper >::wrap("parameter_map"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/parameter_map.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for(int i_sc=0; i_sc < scatterers.size(); ++i_sc) { | ~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/scatterer_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/sampling_base.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer_utils.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/scatterer.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::henke::table]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/scatterer.cpp:349:54: required from here 349 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::sasaki::table]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/scatterer.cpp:353:55: required from here 353 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scattering_type_registry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/sigmaa.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/sigmaa.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::xray::scatterer_flags; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:142:44: required from here 140 | class_ wrapper = scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | scatterer_flags, | ~~~~~~~~~~~~~~~~ 142 | return_internal_reference<> >::wrap("shared_scatterer_flags"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/sigmaa.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/sigmaa.cpp:8: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp: In static member function ‘static std::auto_ptr cctbx::xray::boost_python::{anonymous}::scattering_type_registry_wrappers::constructor_for_pickle(const boost::python::dict&, const boost::python::list&, const cctbx::xray::scattering_type_registry::unique_counts_t&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:55:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr self(new w_t); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/structure_factors_direct.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/structure_factors_direct.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/twin_targets.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_components.cpp:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_components.cpp:91:77: required from here 91 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_components.cpp:92:78: required from here 92 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/xray_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/xray_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/observations/boost_python/observations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/observations/boost_python/observations.cpp g++ -o cctbx/xray/observations/boost_python/observations_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/observations/boost_python/observations_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/targets/shelxl_wght_ls_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o chiltbx/handle_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/chiltbx/handle_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:14, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -o chiltbx/handle_test -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread chiltbx/handle_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o cma_es/cma/cmaes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cma_es/cma/cmaes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::shared cctbx::xray::twin_targets::twin_completion::get_free_model_selection(scitbx::af::const_ref >, const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:42:50: required from here 42 | .def("get_free_model_selection", &w_t::get_free_model_selection) | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:128:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 128 | CCTBX_ASSERT( index < flags.size() ); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:128:11: note: in expansion of macro ‘CCTBX_ASSERT’ 128 | CCTBX_ASSERT( index < flags.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:182:39: required from here 182 | .def("r_intensity_abs", &w_t::r_intensity_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:559:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:559:6: note: in expansion of macro ‘CCTBX_ASSERT’ 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:560:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:560:6: note: in expansion of macro ‘CCTBX_ASSERT’ 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:561:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:561:6: note: in expansion of macro ‘CCTBX_ASSERT’ 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:189:38: required from here 189 | .def("r_intensity_sq", &w_t::r_intensity_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:604:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:604:6: note: in expansion of macro ‘CCTBX_ASSERT’ 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:605:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:605:6: note: in expansion of macro ‘CCTBX_ASSERT’ 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:606:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:606:6: note: in expansion of macro ‘CCTBX_ASSERT’ 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:196:39: required from here 196 | .def("r_amplitude_abs", &w_t::r_amplitude_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:649:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:649:6: note: in expansion of macro ‘CCTBX_ASSERT’ 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:650:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:650:6: note: in expansion of macro ‘CCTBX_ASSERT’ 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:651:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:651:6: note: in expansion of macro ‘CCTBX_ASSERT’ 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:203:38: required from here 203 | .def("r_amplitude_sq", &w_t::r_amplitude_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:697:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:697:6: note: in expansion of macro ‘CCTBX_ASSERT’ 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:698:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:698:6: note: in expansion of macro ‘CCTBX_ASSERT’ 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:699:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:699:6: note: in expansion of macro ‘CCTBX_ASSERT’ 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:263:45: required from here 263 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:997:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:997:19: note: in expansion of macro ‘CCTBX_ASSERT’ 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:1003:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:1003:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:1006:41: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:1006:13: note: in expansion of macro ‘CCTBX_ASSERT’ 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:1010:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:1010:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:275:45: required from here 275 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:936:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:936:17: note: in expansion of macro ‘CCTBX_ASSERT’ 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:942:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:942:19: note: in expansion of macro ‘CCTBX_ASSERT’ 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:945:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:945:17: note: in expansion of macro ‘CCTBX_ASSERT’ 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:948:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:948:17: note: in expansion of macro ‘CCTBX_ASSERT’ 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘cctbx::xray::twin_targets::hemihedral_r_values::hemihedral_r_values(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value&>; Value = cctbx::xray::twin_targets::hemihedral_r_values; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<5>::apply::execute(PyObject*, t0, t1, t2, t3, t4) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&; t4 = const scitbx::mat3&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; W = cctbx::xray::twin_targets::hemihedral_r_values; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:169:13: required from here 168 | class_("hemihedral_r_values", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | .def(init< | ~~~~^~~~~~ 170 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 1 obs indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 2 calc indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | sgtbx::space_group const&, // 3 space group | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | bool const&, // 4 anomalous flag | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | scitbx::mat3 const& // 5 twin law | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 | > | ~ 176 | ((arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~ 177 | arg("hkl_calc"), | ~~~~~~~~~~~~~~~~ 178 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 179 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 180 | arg("twin_law") | ~~~~~~~~~~~~~~~ 181 | ))) | ~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:544:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 544 | for (long ii=0;ii::refine(const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/quadrature.h:523:14: required from ‘scitbx::math::quadrature::gauss_legendre_engine::gauss_legendre_engine(const int&) [with FloatType = double]’ 523 | x = refine( start_guess ); | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/twin_targets.h:1070:68: required from ‘cctbx::xray::twin_targets::single_twin_likelihood::single_twin_likelihood(const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const bool&, const bool&, const FloatType&, const FloatType&, const FloatType&, const int&) [with FloatType = double]’ 1070 | scitbx::math::quadrature::gauss_legendre_engine tmp_gle(n_quad_); | ^~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8, A9, A10, A11, A12, A13) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; A9 = boost::python::objects::reference_to_value; A10 = boost::python::objects::reference_to_value; A11 = boost::python::objects::reference_to_value; A12 = boost::python::objects::reference_to_value; A13 = boost::python::objects::reference_to_value; Value = cctbx::xray::twin_targets::single_twin_likelihood; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<14>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8, t9, t10, t11, t12, t13) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector14; PyObject = _object; t0 = const double&; t1 = const double&; t2 = const double&; t3 = const double&; t4 = const double&; t5 = const double&; t6 = const double&; t7 = const double&; t8 = const bool&; t9 = const bool&; t10 = const double&; t11 = const double&; t12 = const double&; t13 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector14; NArgs = boost::mpl::size >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init; W = cctbx::xray::twin_targets::single_twin_likelihood; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:343:14: required from here 342 | class_("single_twin_likelihood", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | .def(init< | ~~~~^~~~~~ 344 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 | bool const&, bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 | double const&, int const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 | > | ~ 352 | ((arg("i_obs1"), arg("s_obs1"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | arg("i_obs2"), arg("s_obs2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 | arg("f_calc1"), arg("f_calc2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 | arg("eps1"), arg("eps2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 | arg("centric1"),arg("centric2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 | arg("alpha"), arg("beta"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 | arg("twin_fraction"), arg("n_quad") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | )) | ~~ 360 | ) | ~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/quadrature.h:546:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 546 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘unsigned int dxtbx::boost_python::cbf_decompress(const char*, std::size_t, int*, std::size_t)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:124:50: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 124 | while ((j < packed_sz) && ((values - original) < values_sz)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘void dxtbx::boost_python::rod_TY5_TY6_decompress(int*, const char*, const char*, int, int, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:207:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 207 | for (size_t iy = 0; iy < slow; iy++) { | ~~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:228:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 228 | for (int k = 0; k < nblock; k++) { | ~~^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:254:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 254 | for (int j = 0; j < nbit; j++) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:261:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 261 | for (int j = 0; j < BLOCKSIZE; j++) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:282:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 282 | for (int i = 0; i < nrest; i++) { | ~~^~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/flumpy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘scitbx::af::flex_int dxtbx::boost_python::uncompress(const boost::python::api::object&, const int&, const int&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 183 | DXTBX_ASSERT(nn == (slow * fast)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:5: note: in expansion of macro ‘DXTBX_ASSERT’ 183 | DXTBX_ASSERT(nn == (slow * fast)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘void dxtbx::boost_python::radial_average(scitbx::af::versa >&, scitbx::af::versa >&, const scitbx::vec2&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, double, double, const scitbx::vec2&, const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:218:43: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 218 | for (std::size_t y = upper_left[1]; y < lower_right[1]; y++) { /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:219:45: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 219 | for (std::size_t x = upper_left[0]; x < lower_right[0]; x++) { g++ -o dxtbx/src/dxtbx/boost_python/imageset_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/format/boost_python/image_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/nexus_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = bool; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = signed char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = float; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = double; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:138:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:140:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 140 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:166:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:168:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 168 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = long unsigned int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:191:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 191 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:193:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:215:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:217:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 217 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:113:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:115:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp:10:1: warning: ‘typedef’ was ignored in this declaration 10 | typedef struct cbf_handle_struct; | ^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = bool]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = bool]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = int]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = double]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/masking/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:24, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:9: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/beam.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:25: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:27: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/detector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:17: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/goniometer_shadow_masking.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:30: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::ImageBuffer dxtbx::ImageSet::get_raw_data(std::size_t)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:651:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | if (data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::Image dxtbx::ImageSet::get_raw_data_as_double(std::size_t)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1119:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1119 | if (double_raw_data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1206:12: note: by ‘dxtbx::ImageSet dxtbx::ImageGrid::partial_set(std::size_t, std::size_t) const’ 1206 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1142:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1142:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h:17: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1156:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1156:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1477:12: note: by ‘dxtbx::ImageSet dxtbx::ImageSequence::partial_set(std::size_t, std::size_t) const’ 1477 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1241:23: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1241 | if (data.size() != scan->get_num_images()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1280:26: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1280 | if (indices.size() != scan->get_num_images()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘void dxtbx::ImageSequence::set_scan(const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1402:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1402 | if (scan->get_num_images() != size()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1418:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:1418:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:17: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:469:56: required from here 469 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = float]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:471:55: required from here 471 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:473:53: required from here 473 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::BeamBase; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:250:56: required from here 250 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 251 | obj, | ~~~~ 252 | boost::python::extract(models[0])(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 | &ImageSetData::set_beam); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Detector; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:254:56: required from here 254 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 255 | obj, | ~~~~ 256 | boost::python::extract(models[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | &ImageSetData::set_detector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Goniometer; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:258:58: required from here 258 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 259 | obj, | ~~~~ 260 | boost::python::extract(models[2]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 | &ImageSetData::set_goniometer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Scan; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:262:52: required from here 262 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 263 | obj, | ~~~~ 264 | boost::python::extract(models[3]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 | &ImageSetData::set_scan); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_tuple(dxtbx::model::Beam&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:209:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 209 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_list(dxtbx::model::Beam&, boost::python::list)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:219:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 219 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static boost::python::tuple dxtbx::model::boost_python::PolychromaticBeamPickleSuite::getstate(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:302:32: warning: unused variable ‘beam’ [-Wunused-variable] 302 | const PolychromaticBeam &beam = | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static void dxtbx::model::boost_python::PolychromaticBeamPickleSuite::setstate(boost::python::api::object, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:308:26: warning: unused variable ‘beam’ [-Wunused-variable] 308 | PolychromaticBeam &beam = boost::python::extract(obj)(); | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_tuple(dxtbx::model::CrystalBase&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:119:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 119 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_list(dxtbx::model::CrystalBase&, boost::python::list)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:129:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 129 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_B_covariance_from_tuple(dxtbx::model::CrystalBase&, boost::python::api::object)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:141:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 141 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc:17: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:23: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:24: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:19: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/experiment.h:19: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘void dxtbx::model::boost_python::detector_detail::node_from_dict(boost::python::dict, dxtbx::model::Detector::Node*, boost::python::list, scitbx::af::ref)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:9: note: in expansion of macro ‘DXTBX_ASSERT’ 89 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:90:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 90 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:90:9: note: in expansion of macro ‘DXTBX_ASSERT’ 90 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:101:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 101 | for (std::size_t i = 0; i < boost::python::len(obj["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:125:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 125 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:135:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 135 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict, const dxtbx::format::Image&, const dxtbx::format::Image&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:159:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 159 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:169:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 169 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In static member function ‘static void dxtbx::model::boost_python::detector_detail::DetectorPickleSuite::copy_node(dxtbx::model::Detector::Node::pointer, boost::python::dict, boost::python::list)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:229:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 229 | for (std::size_t i = 0; i < boost::python::len(node["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment_list.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/history.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/history.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/experiment_list.h:23, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:20: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/experiment_list.h:20: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:20: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList* dxtbx::model::boost_python::make_experiment_list(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:30:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 30 | for (std::size_t i = 0; i < boost::python::len(items); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_setitem(dxtbx::model::ExperimentList&, int, dxtbx::model::Experiment)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:174:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::Experiment& dxtbx::model::boost_python::experiment_list_getitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:184:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList dxtbx::model::boost_python::experiment_list_getitem_slice(const dxtbx::model::ExperimentList&, boost::python::slice)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:193:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 193 | for (std::size_t i = as.start; i < as.stop && i < self.size(); i += as.step) { | ~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_delitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:203:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 203 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:17: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_tuple(dxtbx::model::Goniometer&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:79:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 79 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_list(dxtbx::model::Goniometer&, boost::python::list)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/model_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/panel.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/parallax_correction.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:16: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:21: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc: In function ‘T* dxtbx::model::boost_python::from_dict(boost::python::dict) [with T = dxtbx::model::MultiAxisGoniometer]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:105:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 105 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:22: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:19: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc:14: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/spectrum.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:19: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec2.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:17: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:20: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In static member function ‘static void dxtbx::model::boost_python::ScanPickleSuite::setstate(dxtbx::model::Scan&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:41: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:7: note: in expansion of macro ‘DXTBX_ASSERT’ 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::dict dxtbx::model::boost_python::MaptoPythonDict(dxtbx::model::ExpImgRangeMap)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:187:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | for (int k = 0; k < val.size(); ++k) { | ~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::list dxtbx::model::boost_python::get_valid_image_ranges(dxtbx::model::Scan&, std::string)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:374:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 374 | for (int k = 0; k < ranges.size(); ++k) { | ~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc:16: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:24: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T* dxtbx::af::flex_table_suite::make_flex_table(boost::python::list) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1233:42: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:416:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 416 | for (std::size_t i = 0; i < len(columns); ++i) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::setitem_row(T&, typename T::size_type, boost::python::dict) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; typename T::size_type = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1252:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:525:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 525 | for (std::size_t i = 0; i < len(row); ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T dxtbx::af::flex_table_suite::select_cols_tuple(const T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1265:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:747:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 747 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::set_selected_cols_tuple(T&, boost::python::tuple, const T&) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1269:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:838:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 838 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::del_selected_cols_tuple(T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1273:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 | .def("del_selected", &del_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1271 | .def("del_selected", &del_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 | .def("del_selected", &del_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 | .def("del_selected", &del_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:890:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 890 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:10: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ g++ -o lib/libcbf-private.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libcbf-private.so.0 cbflib_adaptbx/detectors/mar_adaptor.o cbflib_adaptbx/detectors/cbf_adaptor.o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o cbflib_adaptbx/detectors/buffer_based_service.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lhdf5_serial -lcbf In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ Create symlinks for: 'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so.0'->'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so'->'lib/libcbf-private.so.0.0.1' g++ -o exe_dev/cbflib.tst_memory -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cbflib_adaptbx/detectors/tst_memory.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcbf -lcbf-private -lm -lhdf5_serial g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/convert_ccp4_symop_lib.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/spectrum.h:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:9: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ g++ -o exe_dev/cctbx.find_distances -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/find_distances.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o exe_dev/cctbx.getting_started -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/getting_started.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.lattice_symmetry -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/lattice_symmetry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.sym_equiv_sites -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/sym_equiv_sites.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/sys_abs_equiv_space_groups.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o fable/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_10x20.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_10x20.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_8x13.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_8x13.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_9x15.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_9x15.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/fonts_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/gltbx/fonts_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/ext.cpp:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/ext.cpp:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string.hpp:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/str_ref.hpp:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/format.hpp:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/ext.cpp:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/ext.cpp: In function ‘unsigned int fable::ext::get_code_stop(const boost::python::api::object&, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/ext.cpp:24:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 24 | TBXX_ASSERT(stop <= len_code); | ~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/ext.cpp: In function ‘int fable::ext::floating_point_scan_after_dot(const boost::python::api::object&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/ext.cpp:71:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 71 | if (i < code_stop) { | ~~^~~~~~~~~~~ g++ -o gltbx/gl_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/gltbx/gl_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:23: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/scan.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ g++ -o gltbx/gl_functions_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_08_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_08_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ In file included from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:11: /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec2&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec2]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec3&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec3]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ g++ -o gltbx/gl_functions_09_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_09_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_10_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_10_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_11_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_11_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_12_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_12_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_13_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_13_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_14_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_14_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_15_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_15_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/gltbx/glu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/quadrics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/gltbx/quadrics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/util_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/gltbx/util_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/viewer_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/gltbx/viewer_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/ccp4_map/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/cif/boost_python/cif_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/cif/boost_python/cif_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/bruker.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/detectors/bruker.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_set_grid(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp:178:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 178 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp:213:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 213 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 215 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp:216:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 216 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_box(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp:245:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp:278:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 278 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp:280:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 280 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp:281:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 281 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_p1_cell(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/ccp4_map/ext.cpp:311:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ g++ -o iotbx/detectors/bruker_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/detectors/bruker_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/detectors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/detectors/detectors_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/image_divider.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/detectors/image_divider.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/dsn6/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/dsn6/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/misc/boost_python/dtrek_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/misc/boost_python/scalepack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/batch_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/batch_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/column.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/column_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/crystal_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/column.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/column.cpp: In member function ‘void iotbx::mtz::column::set_reals(const scitbx::af::const_ref&, const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/column.cpp:253:48: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/column.cpp:253:5: note: in expansion of macro ‘IOTBX_ASSERT’ 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/batch_bpl.cpp:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/dataset.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::batch; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/batch_bpl.cpp:78:60: required from here 78 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 79 | "shared_batch"); | ~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/dataset_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset_bpl.cpp g++ -o iotbx/mtz/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/column_bpl.cpp:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/object.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/object_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::column; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/column_bpl.cpp:76:60: required from here 76 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 77 | "shared_column"); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal_bpl.cpp:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::crystal; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal_bpl.cpp:42:60: required from here 42 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 43 | "shared_crystal"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/pdb/atom_selection.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/atom_selection.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/hendrickson_lattman.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/sym_equiv.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/miller/asu.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.cpp:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.cpp: In member function ‘void iotbx::mtz::object::replace_miller_indices(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.cpp:433:40: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.cpp:433:5: note: in expansion of macro ‘IOTBX_ASSERT’ 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.cpp:435:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 435 | for(int i_refl=0;i_refl iotbx::mtz::object::extract_integers(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.cpp:624:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 624 | for(int i=0;i iotbx::mtz::object::extract_reals(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.cpp:684:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 684 | for(int i=0;i&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object_bpl.cpp:9: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::dataset; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/mtz/dataset_bpl.cpp:43:60: required from here 43 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 44 | "shared_dataset"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/pdb/common_residue_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/common_residue_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/construct_hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/construct_hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atom_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/construct_hierarchy.cpp: In member function ‘iotbx::pdb::hierarchy::root iotbx::pdb::input::construct_hierarchy(bool, bool, bool)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/construct_hierarchy.cpp:97:20: warning: variable ‘i_chain’ set but not used [-Wunused-but-set-variable=] 97 | for(unsigned i_chain=0;ch_r.next();i_chain++) { | ^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/construct_hierarchy.cpp: In member function ‘void iotbx::pdb::input_atoms_with_labels_generator::run(const iotbx::pdb::input&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/construct_hierarchy.cpp:222:20: warning: variable ‘i_chain’ set but not used [-Wunused-but-set-variable=] 222 | for(unsigned i_chain=0;ch_r.next();i_chain++) { | ^~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy.cpp: In member function ‘bool iotbx::pdb::hierarchy::chain::is_polymer_chain() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy.cpp:1795:26: warning: variable ‘n_water’ set but not used [-Wunused-but-set-variable=] 1795 | int n_polymer_res=0, n_water=0, n_unk = 0, n_non_polymer=0; | ^~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:244:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp(const scitbx::af::const_ref&, int, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:250:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 250 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.cpp: At global scope: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:259:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 259 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp_for_occupancy_groups_simple(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:263:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 263 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_select.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_select.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp: In function ‘void iotbx::pdb::hierarchy::atoms::bpl_wrap()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:84:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | std::auto_ptr, | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_write.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hybrid_36_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hybrid_36_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/c++/16/cassert:46, from /usr/include/boost/function/function_template.hpp:20, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:87:36: required from here 87 | class_ wa = wat::wrap("af_shared_atom"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom_with_labels; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:91:44: required from here 91 | class_ wawl = wawl_t::wrap("af_shared_atom_with_labels"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_ext.cpp:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ gcc -o iotbx/pdb/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hybrid_36_c.c g++ -o iotbx/pdb/hybrid_36_cpp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/hybrid_36_cpp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable iotbx/pdb/hybrid_36_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/input.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/input.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem.hpp:10, from iotbx/pdb/hybrid_36_fem.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/file_utils.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/input.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ g++ -o iotbx/pdb/input_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/input_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/input_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/input_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread iotbx/pdb/hybrid_36_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o iotbx/pdb/overall_counts.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/overall_counts.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/rna_dna_atom_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/write_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/write_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/write_utils.cpp: In destructor ‘iotbx::pdb::write_utils::fstream_open_close::~fstream_open_close()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/write_utils.cpp:42:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 42 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "Failure writing to file: \"" + file_name + "\""); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/write_utils.cpp:42:7: note: in C++11 destructors default to ‘noexcept’ g++ -o iotbx/pdb/xray_structure_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/xray_structure_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/shelx/shelx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/shelx/shelx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/wildcard_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/wildcard_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/xplor/boost_python/xplor_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/xray_structure.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/pdb/xray_structure_bpl.cpp:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o lib/libann_adaptor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libann_adaptor.so.0 annlib_adaptbx/ann/ann_adaptor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lann-cctbx Create symlinks for: 'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so.0'->'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so'->'lib/libann_adaptor.so.0.0.1' g++ -o lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_boost_thread_test_ext.so.0 boost_adaptbx/tests/boost_thread_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/annlib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=annlib_ext.so.0 annlib_adaptbx/ann/boost_python/annlib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lann-cctbx -lann_adaptor -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so.0'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_breadth_first_search_ext.so.0 boost_adaptbx/graph/breadth_first_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so.0'->'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so'->'lib/annlib_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_clustering_algorithm_ext.so.0 boost_adaptbx/graph/clustering_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_connected_component_algorithm_ext.so.0 boost_adaptbx/graph/connected_component_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_ext.so.0 boost_adaptbx/graph/graph_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_graph_structure_comparison_ext.so.0 boost_adaptbx/graph/graph_structure_comparison_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_maximum_clique_ext.so.0 boost_adaptbx/graph/maximum_clique_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/boost_adaptbx_graph_metric_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_metric_ext.so.0 boost_adaptbx/graph/metric_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so.0'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_min_cut_max_flow_ext.so.0 boost_adaptbx/graph/min_cut_max_flow_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_utility_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_utility_ext.so.0 boost_adaptbx/graph/utility_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so.0'->'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so'->'lib/boost_adaptbx_graph_ext.so.0.0.1' Create symlinks for: 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' Create symlinks for: 'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so.0'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_python_streambuf_test_ext.so.0 boost_adaptbx/tests/python_streambuf_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer g++ -o lib/boost_optional_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_optional_ext.so.0 boost_adaptbx/optional_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer g++ -o lib/boost_python_hybrid_times_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_hybrid_times_ext.so.0 boost_adaptbx/hybrid_times_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so.0'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' g++ -o lib/boost_python_meta_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_meta_ext.so.0 boost_adaptbx/meta_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so.0'->'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so'->'lib/boost_optional_ext.so.0.0.1' g++ -o lib/boost_rational_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_rational_ext.so.0 boost_adaptbx/rational_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so.0'->'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so'->'lib/boost_python_hybrid_times_ext.so.0.0.1' g++ -o lib/boost_tuple_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_tuple_ext.so.0 boost_adaptbx/tuple_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so.0'->'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so'->'lib/boost_python_meta_ext.so.0.0.1' g++ -o lib/cbflib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cbflib_ext.so.0 cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcbf-private -lcbf -lboost_thread -lboost_python314 -lm -lhdf5_serial Create symlinks for: 'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so.0'->'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so'->'lib/boost_tuple_ext.so.0.0.1' Create symlinks for: 'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so.0'->'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so'->'lib/boost_rational_ext.so.0.0.1' g++ -o lib/libccp4io.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libccp4io.so.0 ccp4io_adaptbx/fortran_call_stubs.o ccp4io_adaptbx/printf_wrappers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lm -lccp4c g++ -o scitbx/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so.0'->'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so'->'lib/libccp4io.so.0.0.1' g++ -o lib/ccp4io_adaptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=ccp4io_adaptbx_ext.so.0 ccp4io_adaptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lccp4io -lccp4c -lssm -lmmdb2 -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so.0'->'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so'->'lib/cbflib_ext.so.0.0.1' g++ -o scitbx/boost_python/slice.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/slice.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/ccp4io_adaptbx_ext.so.0.0.1' 'lib/ccp4io_adaptbx_ext.so.0'->'lib/ccp4io_adaptbx_ext.so.0.0.1' 'lib/ccp4io_adaptbx_ext.so'->'lib/ccp4io_adaptbx_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/cma_es_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cma_es_ext.so.0 cma_es/cma_es_ext.o cma_es/cma/cmaes.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_ext.so.0 dxtbx/src/dxtbx/boost_python/ext.o dxtbx/src/dxtbx/boost_python/compression.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf Create symlinks for: 'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so.0'->'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so'->'lib/cma_es_ext.so.0.0.1' g++ -o lib/dxtbx_format_image_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_image_ext.so.0 dxtbx/src/dxtbx/format/boost_python/image_ext.o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so.0'->'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so'->'lib/dxtbx_ext.so.0.0.1' g++ -o lib/dxtbx_format_nexus_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_nexus_ext.so.0 dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lhdf5_serial g++ -o lib/fable_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=fable_ext.so.0 fable/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so.0'->'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so'->'lib/dxtbx_format_nexus_ext.so.0.0.1' g++ -o lib/iotbx_ccp4_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_ccp4_map_ext.so.0 iotbx/ccp4_map/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lccp4c -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so.0'->'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so'->'lib/fable_ext.so.0.0.1' g++ -o ucif/cifParser.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ucif/cifParser.cpp g++ -o ucif/cifLexer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/ucif/cifLexer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so.0'->'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so'->'lib/iotbx_ccp4_map_ext.so.0.0.1' g++ -o lib/iotbx_detectors_bruker_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_bruker_ext.so.0 iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so.0'->'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so'->'lib/dxtbx_format_image_ext.so.0.0.1' g++ -o lib/iotbx_detectors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_ext.so.0 iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so.0'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' g++ -o lib/iotbx_dsn6_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dsn6_map_ext.so.0 iotbx/dsn6/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_dtrek_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dtrek_ext.so.0 iotbx/misc/boost_python/dtrek_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so.0'->'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so'->'lib/iotbx_dsn6_map_ext.so.0.0.1' g++ -o lib/libiotbx_mtz.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_mtz.so.0 iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lccp4io -lccp4c -lm -lboost_thread Create symlinks for: 'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so.0'->'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so'->'lib/iotbx_dtrek_ext.so.0.0.1' g++ -o lib/libiotbx_pdb.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_pdb.so.0 iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread Create symlinks for: 'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so.0'->'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so'->'lib/iotbx_detectors_ext.so.0.0.1' Create symlinks for: 'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so.0'->'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so'->'lib/libiotbx_mtz.so.0.0.1' g++ -o lib/iotbx_scalepack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_scalepack_ext.so.0 iotbx/misc/boost_python/scalepack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm g++ -o lib/libscitbx_boost_python.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -shared -rdynamic -std=c++14 -Wl,-soname=libscitbx_boost_python.so.0 scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 g++ -o lib/iotbx_shelx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_shelx_ext.so.0 iotbx/shelx/shelx_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so.0'->'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so'->'lib/iotbx_scalepack_ext.so.0.0.1' g++ -o lib/iotbx_wildcard_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_wildcard_ext.so.0 iotbx/wildcard_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so.0'->'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so'->'lib/iotbx_wildcard_ext.so.0.0.1' Create symlinks for: 'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so.0'->'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so'->'lib/libscitbx_boost_python.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/dxtbx_toolbox/libdistl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_chemical_elements_ext.so.0 cctbx/eltbx/boost_python/chemical_elements_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so.0'->'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so'->'lib/iotbx_shelx_ext.so.0.0.1' g++ -o lib/determine_unit_cell_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=determine_unit_cell_ext.so.0 cctbx/uctbx/determine_unit_cell/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so.0'->'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so'->'lib/determine_unit_cell_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so.0'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' g++ -o lib/cctbx_adptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adptbx_ext.so.0 cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_math_ext.so.0 cctbx/math/boost_python/math_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so.0'->'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so'->'lib/libiotbx_pdb.so.0.0.1' g++ -o lib/gltbx_viewer_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_viewer_utils_ext.so.0 gltbx/viewer_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so.0'->'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so'->'lib/cctbx_math_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so.0'->'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so'->'lib/cctbx_adptbx_ext.so.0.0.1' g++ -o lib/iotbx_pdb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_ext.so.0 iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so.0'->'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so'->'lib/gltbx_viewer_utils_ext.so.0.0.1' g++ -o lib/iotbx_xplor_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_xplor_ext.so.0 iotbx/xplor/boost_python/xplor_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_geometry_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_ext.so.0 cctbx/geometry/boost_python/geometry_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_icsd_radii_ext.so.0 cctbx/eltbx/boost_python/icsd_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_crystal_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_crystal_ext.so.0 cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so.0'->'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so'->'lib/iotbx_xplor_ext.so.0.0.1' g++ -o lib/cctbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_array_family_flex_ext.so.0 cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so.0'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' g++ -o lib/dxtbx_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_model_ext.so.0 dxtbx/src/dxtbx/model/boost_python/beam.o dxtbx/src/dxtbx/model/boost_python/spectrum.o dxtbx/src/dxtbx/model/boost_python/goniometer.o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o dxtbx/src/dxtbx/model/boost_python/panel.o dxtbx/src/dxtbx/model/boost_python/detector.o dxtbx/src/dxtbx/model/boost_python/scan.o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o dxtbx/src/dxtbx/model/boost_python/crystal.o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o dxtbx/src/dxtbx/model/boost_python/history.o dxtbx/src/dxtbx/model/boost_python/experiment.o dxtbx/src/dxtbx/model/boost_python/experiment_list.o dxtbx/src/dxtbx/model/boost_python/model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so.0'->'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so'->'lib/cctbx_geometry_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_neutron_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_neutron_ext.so.0 cctbx/eltbx/boost_python/neutron_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_cif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_cif_ext.so.0 iotbx/cif/boost_python/cif_ext.o ucif/cifParser.o ucif/cifLexer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm -lantlr3c Create symlinks for: 'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so.0'->'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so'->'lib/iotbx_pdb_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_ext.so.0 cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so.0'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' g++ -o lib/gltbx_fonts_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_fonts_ext.so.0 gltbx/fonts_ext.o gltbx/font_ucs_8x13.o gltbx/font_ucs_9x15.o gltbx/font_ucs_10x20.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so.0'->'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so'->'lib/iotbx_cif_ext.so.0.0.1' g++ -o lib/cctbx_geometry_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_restraints_ext.so.0 cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so.0'->'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so'->'lib/gltbx_fonts_ext.so.0.0.1' g++ -o lib/cctbx_covariance_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_covariance_ext.so.0 cctbx/covariance/boost_python/covariance_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so.0'->'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so'->'lib/cctbx_array_family_flex_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so.0'->'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so'->'lib/cctbx_covariance_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_tiny_pse_ext.so.0 cctbx/eltbx/boost_python/tiny_pse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_statistics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_statistics_ext.so.0 cctbx/boost_python/statistics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_xray_scattering_ext.so.0 cctbx/eltbx/boost_python/xray_scattering_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so.0'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' g++ -o lib/cctbx_multipolar_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_multipolar_ext.so.0 cctbx/multipolar/aspherical_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so.0'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' g++ -o lib/cctbx_xray_observations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_observations_ext.so.0 cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so.0'->'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so'->'lib/cctbx_multipolar_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_attenuation_coefficient_ext.so.0 cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so.0'->'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so'->'lib/cctbx_statistics_ext.so.0.0.1' g++ -o lib/dxtbx_imageset_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_imageset_ext.so.0 dxtbx/src/dxtbx/boost_python/imageset_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lhdf5_serial -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so.0'->'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so'->'lib/cctbx_xray_observations_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_asu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_asu_ext.so.0 cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' g++ -o lib/cctbx_miller_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_miller_ext.so.0 cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so.0'->'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so'->'lib/cctbx_crystal_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so.0'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' g++ -o lib/gltbx_util_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_util_ext.so.0 gltbx/util_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm g++ -o lib/cctbx_orientation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_orientation_ext.so.0 cctbx/boost_python/orientation_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so.0'->'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so'->'lib/cctbx_maptbx_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so.0'->'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so'->'lib/cctbx_orientation_ext.so.0.0.1' g++ -o lib/cctbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_masks_ext.so.0 cctbx/masks/boost_python/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_symmetry_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_symmetry_search_ext.so.0 cctbx/symmetry_search/boost_python/symmetry_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so.0'->'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so'->'lib/gltbx_util_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_bcr_bcr_ext.so.0 cctbx/maptbx/bcr/bcr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so.0'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' g++ -o lib/dxtbx_masking_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_masking_ext.so.0 dxtbx/src/dxtbx/masking/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/usr/lib -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so.0'->'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so'->'lib/cctbx_symmetry_search_ext.so.0.0.1' g++ -o lib/gltbx_quadrics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_quadrics_ext.so.0 gltbx/quadrics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so.0'->'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so'->'lib/cctbx_masks_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_fp_fdp_ext.so.0 cctbx/eltbx/boost_python/fp_fdp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so.0'->'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so'->'lib/dxtbx_model_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so.0'->'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so'->'lib/cctbx_miller_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so.0'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' Create symlinks for: 'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so.0'->'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so'->'lib/gltbx_quadrics_ext.so.0.0.1' Create symlinks for: 'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so.0'->'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so'->'lib/dxtbx_imageset_ext.so.0.0.1' g++ -o lib/cctbx_adp_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adp_restraints_ext.so.0 cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so.0'->'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so'->'lib/dxtbx_masking_ext.so.0.0.1' g++ -o lib/iotbx_mtz_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_mtz_ext.so.0 iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -liotbx_mtz -lcctbx -lccp4io -lccp4c -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_merging_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_merging_ext.so.0 cctbx/merging/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_xray_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_ext.so.0 cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_translation_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_translation_search_ext.so.0 cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_asymmetric_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_asymmetric_map_ext.so.0 cctbx/maptbx/asymmetric_map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so.0'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so.0'->'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so'->'lib/cctbx_merging_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so.0'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so.0'->'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so'->'lib/cctbx_translation_search_ext.so.0.0.1' g++ -o lib/dxtbx_flumpy.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_flumpy.so.0 dxtbx/src/dxtbx/boost_python/flumpy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so.0'->'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so'->'lib/cctbx_adp_restraints_ext.so.0.0.1' g++ -o lib/cctbx_dmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_dmtbx_ext.so.0 cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so.0'->'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so'->'lib/iotbx_mtz_ext.so.0.0.1' g++ -o lib/cctbx_anharmonic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_anharmonic_ext.so.0 cctbx/adptbx/boost_python/anharmonic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so.0'->'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so'->'lib/dxtbx_flumpy.so.0.0.1' Create symlinks for: 'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so.0'->'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so'->'lib/cctbx_dmtbx_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_sasaki_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_sasaki_ext.so.0 cctbx/eltbx/boost_python/sasaki_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_sgtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_ext.so.0 cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/gltbx_glu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_glu_ext.so.0 gltbx/glu_ext.o gltbx/glu_defines_00_bpl.o gltbx/glu_defines_01_bpl.o gltbx/glu_functions_00_bpl.o gltbx/glu_functions_01_bpl.o gltbx/glu_functions_02_bpl.o gltbx/glu_functions_03_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm g++ -o lib/cctbx_eltbx_wavelengths_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_wavelengths_ext.so.0 cctbx/eltbx/boost_python/wavelengths_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_eltbx_henke_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_henke_ext.so.0 cctbx/eltbx/boost_python/henke_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so.0'->'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so'->'lib/cctbx_anharmonic_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_covalent_radii_ext.so.0 cctbx/eltbx/boost_python/covalent_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so.0'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' g++ -o lib/gltbx_gl_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_gl_ext.so.0 gltbx/gl_ext.o gltbx/gl_defines_00_bpl.o gltbx/gl_defines_01_bpl.o gltbx/gl_defines_02_bpl.o gltbx/gl_defines_03_bpl.o gltbx/gl_defines_04_bpl.o gltbx/gl_defines_05_bpl.o gltbx/gl_defines_06_bpl.o gltbx/gl_defines_07_bpl.o gltbx/gl_functions_00_bpl.o gltbx/gl_functions_01_bpl.o gltbx/gl_functions_02_bpl.o gltbx/gl_functions_03_bpl.o gltbx/gl_functions_04_bpl.o gltbx/gl_functions_05_bpl.o gltbx/gl_functions_06_bpl.o gltbx/gl_functions_07_bpl.o gltbx/gl_functions_08_bpl.o gltbx/gl_functions_09_bpl.o gltbx/gl_functions_10_bpl.o gltbx/gl_functions_11_bpl.o gltbx/gl_functions_12_bpl.o gltbx/gl_functions_13_bpl.o gltbx/gl_functions_14_bpl.o gltbx/gl_functions_15_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so.0'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' g++ -o lib/cctbx_french_wilson_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_french_wilson_ext.so.0 cctbx/boost_python/french_wilson_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so.0'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' g++ -o lib/cctbx_uctbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_uctbx_ext.so.0 cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o cctbx/uctbx/boost_python/niggli_reduction.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so.0'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' g++ -o lib/cctbx_emma_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_emma_ext.so.0 cctbx/boost_python/emma_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so.0'->'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so'->'lib/gltbx_glu_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/dxtbx_toolbox/distl.cpp Create symlinks for: 'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so.0'->'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so'->'lib/cctbx_french_wilson_ext.so.0.0.1' cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so.0'->'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so'->'lib/cctbx_emma_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/libdistl.cpp Create symlinks for: 'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so.0'->'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so'->'lib/gltbx_gl_ext.so.0.0.1' cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so.0'->'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so'->'lib/cctbx_uctbx_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/hough.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/hough.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so.0'->'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so'->'lib/cctbx_xray_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/spotfilter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/spotfilter.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so.0'->'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so'->'lib/cctbx_sgtbx_ext.so.0.0.1' g++ -o mmtbx/masks/atom_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/masks/atom_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/decompose.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/tls/decompose.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/dps_core.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/dps_core/dps_core.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/directional_fft.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/dps_core/directional_fft.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/dps_core/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/indexing_api/indexing_api.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/indexing_api.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/diffraction/ewald_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/ewald_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/iotbx_pdb_hierarchy_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_hierarchy_ext.so.0 iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/libmmtbx_tls.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libmmtbx_tls.so.0 mmtbx/tls/decompose.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lm Create symlinks for: 'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so.0'->'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so'->'lib/libmmtbx_tls.so.0.0.1' g++ -o rstbx/diffraction/partial_spot_position_partial_H.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/partial_spot_position_partial_H.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libspotfinder.so.0 spotfinder/core_toolbox/spot.o spotfinder/core_toolbox/libdistl.o spotfinder/core_toolbox/hough.o spotfinder/core_toolbox/distl.o spotfinder/core_toolbox/spotfilter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so.0'->'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so'->'lib/libspotfinder.so.0.0.1' g++ -o lib/libdxtbxspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libdxtbxspotfinder.so.0 spotfinder/dxtbx_toolbox/libdistl.o spotfinder/dxtbx_toolbox/distl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lspotfinder -lann-cctbx -lomptbx -lm g++ -o scitbx/minpack/raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/minpack/raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so.0'->'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so'->'lib/libdxtbxspotfinder.so.0.0.1' gcc -o scitbx/slatec/lib_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/slatec/lib_c.c Create symlinks for: 'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so.0'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libscitbx_slatec.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libscitbx_slatec.so.0 scitbx/slatec/lib_c.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lm Create symlinks for: 'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so.0'->'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so'->'lib/libscitbx_slatec.so.0.0.1' g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libscitbx_minpack.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libscitbx_minpack.so.0 scitbx/minpack/raw.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lm Create symlinks for: 'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so.0'->'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so'->'lib/libscitbx_minpack.so.0.0.1' g++ -o smtbx/refinement/constraints/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/librstbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=librstbx.so.0 rstbx/dps_core/dps_core.o rstbx/dps_core/directional_fft.o rstbx/dps_core/direction.o rstbx/indexing_api/indexing_api.o rstbx/diffraction/ewald_sphere.o rstbx/diffraction/partial_spot_position_partial_H.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lcctbx -lm Create symlinks for: 'lib/librstbx.so.0.0.1' 'lib/librstbx.so.0'->'lib/librstbx.so.0.0.1' 'lib/librstbx.so'->'lib/librstbx.so.0.0.1' g++ -o smtbx/refinement/constraints/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/data_model.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/data_model.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/tokenizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/tokenizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/numeric.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/numeric.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/alignment/alignment_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/alignment/alignment_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/building/loop_closure/ccd_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/building/loop_closure/ccd_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/bulk_solvent/bulk_solvent_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/bulk_solvent/bulk_solvent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/den/boost_python/den_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/den/boost_python/den_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libxcif.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libxcif.so.0 xcif/data_model.o xcif/tokenizer.o xcif/numeric.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread Create symlinks for: 'lib/libxcif.so.0.0.1' 'lib/libxcif.so.0'->'lib/libxcif.so.0.0.1' 'lib/libxcif.so'->'lib/libxcif.so.0.0.1' g++ -o mmtbx/secondary_structure/dssp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/secondary_structure/dssp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libsmtbx_refinement_constraints.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libsmtbx_refinement_constraints.so.0 smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/scaled_adp.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o lib/libmmtbx_masks.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libmmtbx_masks.so.0 mmtbx/masks/atom_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm Create symlinks for: 'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so.0'->'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so'->'lib/libsmtbx_refinement_constraints.so.0.0.1' g++ -o mmtbx/dynamics/dynamics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/dynamics/dynamics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so.0'->'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so'->'lib/libmmtbx_masks.so.0.0.1' g++ -o mmtbx/dynamics/dynamics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/dynamics/dynamics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/f_model/f_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/f_model/f_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry/boost_python/asa_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry/boost_python/asa_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/den/den.h:2, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/den/boost_python/den_ext.cpp:12: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::den::den_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/den/boost_python/den_ext.cpp:53:78: required from here 53 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 54 | "shared_den_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_dssp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dssp_ext.so.0 mmtbx/secondary_structure/dssp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so.0'->'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so'->'lib/mmtbx_dssp_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/clash_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry/boost_python/clash_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_alignment_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_alignment_ext.so.0 mmtbx/alignment/alignment_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so.0'->'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so'->'lib/mmtbx_alignment_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/indexing_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_dynamics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dynamics_ext.so.0 mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so.0'->'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so'->'lib/mmtbx_dynamics_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/primitive_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry/boost_python/primitive_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry/boost_python/asa_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_building_loop_closure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_building_loop_closure_ext.so.0 mmtbx/building/loop_closure/ccd_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -liotbx_pdb -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so.0'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/shared_types_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry/boost_python/clash_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/extract.hpp:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_den_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_den_restraints_ext.so.0 mmtbx/den/boost_python/den_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_geometry_primitive_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_primitive_ext.so.0 mmtbx/geometry/boost_python/primitive_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so.0'->'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so'->'lib/mmtbx_den_restraints_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry/boost_python/sphere_surface_sampling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so.0'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' g++ -o mmtbx/hydrogens/hydrogens_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/hydrogens/hydrogens_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_f_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_f_model_ext.so.0 mmtbx/f_model/f_model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so.0'->'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so'->'lib/mmtbx_f_model_ext.so.0.0.1' g++ -o mmtbx/masks/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/masks/masks_ext.cpp g++ -o lib/mmtbx_geometry_shared_types_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_shared_types_ext.so.0 mmtbx/geometry/boost_python/shared_types_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so.0'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/max_lik/max_lik_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_sphere_surface_sampling_ext.so.0 mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/max_lik/max_lik.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_hydrogens_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_hydrogens_ext.so.0 mmtbx/hydrogens/hydrogens_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so.0'->'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so'->'lib/mmtbx_hydrogens_ext.so.0.0.1' g++ -o mmtbx/bulk_solvent/mosaic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/bulk_solvent/mosaic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_bulk_solvent_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_bulk_solvent_ext.so.0 mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so.0'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' g++ -o mmtbx/ncs/cartesian_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/ncs/cartesian_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_indexing_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_indexing_ext.so.0 mmtbx/geometry/boost_python/indexing_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o mmtbx/ncs/tncs_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/ncs/tncs_ext.cpp Create symlinks for: 'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so.0'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/pair_interaction/interaction_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/pair_interaction/interaction_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_masks_ext.so.0 mmtbx/masks/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_geometry_clash_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_clash_ext.so.0 mmtbx/geometry/boost_python/clash_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so.0'->'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so'->'lib/mmtbx_masks_ext.so.0.0.1' g++ -o mmtbx/probe/boost_python/probe_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/probe/boost_python/probe_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so.0'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' g++ -o mmtbx/probe/Scoring.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/probe/Scoring.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_max_lik_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_max_lik_ext.so.0 mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so.0'->'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so'->'lib/mmtbx_max_lik_ext.so.0.0.1' g++ -o mmtbx/probe/DotSpheres.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/probe/DotSpheres.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_cartesian_restraints_ext.so.0 mmtbx/ncs/cartesian_restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_mosaic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_mosaic_ext.so.0 mmtbx/bulk_solvent/mosaic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so.0'->'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so'->'lib/mmtbx_mosaic_ext.so.0.0.1' Create symlinks for: 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' g++ -o mmtbx/probe/SpatialQuery.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/probe/SpatialQuery.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/reduce/boost_python/reduce_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/reduce/boost_python/reduce_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/ramachandran.h:10, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i mmtbx::geometry_restraints::target_phi_psi(const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const phi_psi_proxy&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/ramachandran.h:314:35: required from here 314 | r = target_phi_psi(general_table, sites_cart, proxy);} | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/ramachandran.h:269:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 269 | for(int i=0; i, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 284 | for(int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/format/parsing.hpp:21, from /usr/include/boost/format.hpp:50, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/dihedral.h:8: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::phi_psi_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:52:75: required from here 52 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 53 | "shared_phi_psi_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_ncs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_ext.so.0 mmtbx/ncs/tncs_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so.0'->'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so'->'lib/mmtbx_ncs_ext.so.0.0.1' g++ -o mmtbx/reduce/InteractionGraph.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/reduce/InteractionGraph.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc probe/lib/libprobelib.a mmtbx/probe/Scoring.o mmtbx/probe/DotSpheres.o mmtbx/probe/SpatialQuery.o ranlib probe/lib/libprobelib.a g++ -o mmtbx/reduce/Optimizers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/reduce/Optimizers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_pair_interaction_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_pair_interaction_ext.so.0 mmtbx/pair_interaction/interaction_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_geometry_asa_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_asa_ext.so.0 mmtbx/geometry/boost_python/asa_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so.0'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' g++ -o mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so.0'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' g++ -o mmtbx/rotamer/fit_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/rotamer/fit_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/rsr/rsr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/rsr/rsr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/reference_coordinate.h:2, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:13: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = mmtbx::geometry_restraints::reference_coordinate_proxy]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:80:41: required from here 80 | cctbx::geometry_restraints::shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::reference_coordinate_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:61:25: required from here 61 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 62 | "shared_reference_coordinate_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o mmtbx/scaling/scaling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/scaling/scaling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_probe_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_probe_ext.so.0 mmtbx/probe/boost_python/probe_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/probe/lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so.0'->'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so'->'lib/mmtbx_probe_ext.so.0.0.1' g++ -o mmtbx/scaling/twinning_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/scaling/twinning_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ramachandran_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ramachandran_restraints_ext.so.0 mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so.0'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/scaling/relative_scaling_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_rsr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rsr_ext.so.0 mmtbx/rsr/rsr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so.0'->'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so'->'lib/mmtbx_rsr_ext.so.0.0.1' g++ -o mmtbx/scaling/outlier_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/scaling/outlier_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_rotamer_fit_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rotamer_fit_ext.so.0 mmtbx/rotamer/fit_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so.0'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' g++ -o mmtbx/secondary_structure/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/secondary_structure/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reference_coordinate_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reference_coordinate_ext.so.0 mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so.0'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' g++ -o mmtbx/tls/decompose_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/tls/decompose_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc reduce/lib/libreduce2lib.a mmtbx/reduce/PositionReturn.o mmtbx/reduce/InteractionGraph.o mmtbx/reduce/Optimizers.o ranlib reduce/lib/libreduce2lib.a g++ -o mmtbx/tls/tls_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/tls/tls_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_secondary_structure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_secondary_structure_ext.so.0 mmtbx/secondary_structure/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so.0'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' g++ -o mmtbx/tls/optimise_amplitudes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/tls/optimise_amplitudes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/optimise_amplitudes_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/tls/optimise_amplitudes_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_decompose_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_decompose_ext.so.0 mmtbx/tls/decompose_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so.0'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' g++ -o mmtbx/tls/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/tls/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/tls/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/utils/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/utils/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_optimise_amplitudes_ext.so.0 mmtbx/tls/optimise_amplitudes.o mmtbx/tls/optimise_amplitudes_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' g++ -o mmtbx/validation/ramachandran/rama_eval_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/validation/ramachandran/rama_eval_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reduce_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reduce_ext.so.0 mmtbx/reduce/boost_python/reduce_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Lreduce/lib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/reduce/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/probe/lib -lreduce2lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o omptbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/omptbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_scaling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_scaling_ext.so.0 mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so.0'->'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so'->'lib/mmtbx_reduce_ext.so.0.0.1' g++ -o rstbx/array_family/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/array_family/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/array_family/flex_rstbx_arrays.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/array_family/flex_rstbx_arrays.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so.0'->'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so'->'lib/mmtbx_scaling_ext.so.0.0.1' g++ -o rstbx/bandpass/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/bandpass/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/src -Irstbx/bandpass/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/bpcx/detector_model/detector_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bpcx/detector_model/detector_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_validation_ramachandran_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_validation_ramachandran_ext.so.0 mmtbx/validation/ramachandran/rama_eval_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so.0'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/sensor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bpcx/detector_model/sensor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_utils_ext.so.0 mmtbx/utils/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so.0'->'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so'->'lib/mmtbx_utils_ext.so.0.0.1' g++ -o rstbx/diffraction/fastbragg/fastbragg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/diffraction/fastbragg/fastbragg.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/omptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=omptbx_ext.so.0 omptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lomptbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so.0'->'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so'->'lib/omptbx_ext.so.0.0.1' g++ -o rstbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:10: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/parameters.h: In constructor ‘rstbx::bandpass::active_area_filter::active_area_filter(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/parameters.h:100:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i < tiles.size()/4; ++i){ | ~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/parameters.h:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/parameters.h: In member function ‘bool rstbx::bandpass::active_area_filter::operator()(rstbx::bandpass::vec3, const int&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/parameters.h:126:39: warning: comparison of integer expressions of different signedness: ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/parameters.h:126:9: note: in expansion of macro ‘SCITBX_ASSERT’ 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/subpixel_joint_model.h: In member function ‘void rstbx::bandpass::subpixel_joint_model::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/subpixel_joint_model.h:26:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/subpixel_joint_model.h:31:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::prescreen_indices(const double&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:46:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared rstbx::bandpass::use_case_bp3::selected_partialities() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:93:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:152:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 152 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow_force()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:296:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 296 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:462:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 462 | for ( int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectangles(rstbx::bandpass::vec3ref)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 477 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectregions(rstbx::bandpass::vec3ref, const double&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:511:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 511 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::enclosed_pixels() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:543:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 543 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hi_predictions() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:752:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 752 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_lo_predictions() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:763:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 763 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:774:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 774 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions_labelit_format() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:787:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 787 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hkls() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:802:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 802 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::restricted_to_active_areas(scitbx::af::shared, scitbx::af::shared >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:815:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 815 | for (int idx = 0; idx < active_areas.size(); idx+=4){ | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:828:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 828 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ //DEPRECATED | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In function ‘scitbx::af::shared > rstbx::bandpass::ext::use_case_bp2_picture_fast_slow(scitbx::af::shared >, const cctbx::crystal_orientation&, const scitbx::vec3&, const double&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const double&, const scitbx::vec3&, const double&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:933:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 933 | for (int idx = 0; idx < indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = resolution_limited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:616:87: required from here 616 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = unlimited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:620:78: required from here 620 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -o rstbx/indexing_api/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/indexing_api/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/src -Irstbx/indexing_api/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:10: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = scitbx::vec3; MillerConversionPolicy = rstbx::diffraction::fastbragg::vec3_double_miller_index_policy]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:134:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:417:9: warning: variable ‘j_image_ptr’ set but not used [-Wunused-but-set-variable=] 417 | int j_image_ptr = 0; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:418:9: warning: variable ‘progress_pixel’ set but not used [-Wunused-but-set-variable=] 418 | int progress_pixel = 0; | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = cctbx::miller::index<>; MillerConversionPolicy = rstbx::diffraction::fastbragg::integer_miller_index_policy]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:138:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 138 | .def("sweep_over_detector_integer_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | rstbx::diffraction::fastbragg::miller_t, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | rstbx::diffraction::fastbragg::integer_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:417:9: warning: variable ‘j_image_ptr’ set but not used [-Wunused-but-set-variable=] 417 | int j_image_ptr = 0; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:418:9: warning: variable ‘progress_pixel’ set but not used [-Wunused-but-set-variable=] 418 | int progress_pixel = 0; | ^~~~~~~~~~~~~~ g++ -o lib/mmtbx_tls_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_ext.so.0 mmtbx/tls/tls_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/rstbx_bpcx_detector_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bpcx_detector_model_ext.so.0 rstbx/bpcx/detector_model/detector_model_ext.o rstbx/bpcx/detector_model/sensor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so.0'->'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so'->'lib/mmtbx_tls_ext.so.0.0.1' Create symlinks for: 'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so.0'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' g++ -o rstbx/apps/integration_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/apps/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/src -Irstbx/apps/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/integration_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/simage/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/simage/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simage/src -Irstbx/simage/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simage/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simage/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/scope.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/bandpass/ext.cpp:4: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/real_to_complex.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/dps_core/directional_fft.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/dps_core/dps_core.h:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/indexing_api.h:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/indexing_api.h:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘void indexing_api::rayleigh_cpp::estimate_parameters_from_cdf(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp:59:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 59 | for (int i=0; i < x_data.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::pdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp:80:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 80 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::cdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp:96:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::d_cdf_d_sigma(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::gradients(scitbx::af::shared, const int&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp:129:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/indexing_api/ext.cpp:135:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for (int i = 0; i < gradients.size(); ++i){ | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/libdistl.h:81, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/distl.h:14, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/stills/simple_integration.h:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/integration_ext.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/detectors/scanbox.h: In member function ‘Distl::interval_list Distl::scanbox_tiling_explicit::generate_defined_x_tiles(const int&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/iotbx/detectors/scanbox.h:268:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | for (int tile = 0 ; tile < tile_count; ++tile){ | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::append_ISmask(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/stills/simple_integration.h:222:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 222 | for (int i=0; i < mask.size(); i+=2){ | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::positional_correction_mapping(scitbx::af::shared >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/stills/simple_integration.h:273:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 273 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for (int p=0; p >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/stills/simple_integration.h:310:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 310 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 320 | for (int p=0; p > rstbx::integration::simple_integration::safe_background(const scitbx::af::flex_int&, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/stills/simple_integration.h:366:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 366 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 378 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 395 | for (int i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 495 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 550 | for (int i=0; i >, scitbx::af::shared >, scitbx::af::shared >)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/apps/stills/simple_integration.h:575:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 575 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 638 | for (int k=0; k >&, const scitbx::af::const_ref&, const scitbx::mat3&, double, double, int, double, scitbx::vec2, scitbx::vec2, unsigned int, double)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simage/image_simple.hpp:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 144 | for(int i=0;i<=point_spread;i++) { | ~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simage/image_simple.hpp:148:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 148 | for(int j=0;j<=point_spread;j++) { | ~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simage/image_simple.hpp:10: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simage/ext.cpp: In function ‘std::string rstbx::simage::ext::combine_rgb_images(const boost::python::list&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simage/ext.cpp:58:42: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 58 | TBXX_ASSERT(bp::len(rgb_images[j]) == img_size); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ g++ -o lib/rstbx_bandpass_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bandpass_ext.so.0 rstbx/bandpass/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lann-cctbx -lann_adaptor -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so.0'->'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so'->'lib/rstbx_bandpass_ext.so.0.0.1' g++ -o rstbx/simulation/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/simulation/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simulation/src -Irstbx/simulation/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simulation/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simulation/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_diffraction_fastbragg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_diffraction_fastbragg_ext.so.0 rstbx/diffraction/fastbragg/fastbragg_ext.o rstbx/diffraction/fastbragg/fastbragg.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so.0'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' g++ -o rstbx/symmetry/constraints/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -Irstbx/symmetry/constraints/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/symmetry/constraints/src -Irstbx/symmetry/constraints/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/symmetry/constraints/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/symmetry/constraints/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_simage_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simage_ext.so.0 rstbx/simage/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/rstbx_indexing_api_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_indexing_api_ext.so.0 rstbx/indexing_api/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so.0'->'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so'->'lib/rstbx_simage_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so.0'->'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so'->'lib/rstbx_indexing_api_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_grid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_grid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simulation/ext.cpp:11: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::shared rstbx::xfel1::select_proximal_indices(const int&, const double&, const double&, const cctbx::crystal_orientation&, const double&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simulation/sim_xfel1.h:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int x = 0; x < indices_all.size(); ++x){ | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::versa > rstbx::xfel1::raw_diffraction(scitbx::af::shared, scitbx::af::versa >, const size_t&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simulation/sim_xfel1.h:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 178 | for (int mcount=0; mcount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 230 | for (int isel = 0; isel < selected.size(); ++isel){ | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simulation/sim_xfel1.h:231:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int imos = 0; imos < mosaic_perturbations.size(); ++imos){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_tls_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_utils_ext.so.0 mmtbx/tls/utils.o mmtbx/tls/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so.0'->'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so'->'lib/mmtbx_tls_utils_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_bool.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_integration_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_integration_ext.so.0 rstbx/apps/integration_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lann-cctbx -lann_adaptor -lspotfinder -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so.0'->'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so'->'lib/rstbx_integration_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp: In member function ‘const char* scitbx::af::boost_python::cost_of_m_handle_in_af_shared::operator()(unsigned int, unsigned int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:367:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 367 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:375:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 375 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:383:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 383 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/selections.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:2: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/selections.h: In instantiation of ‘scitbx::af::shared scitbx::af::reindexing_array(std::size_t, const const_ref&) [with IntType = int; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:544:7: required from here 544 | reindexing_array, | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/selections.h:156:35: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | SCITBX_ASSERT(iselection[i] < selectee_size); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/selections.h:156:7: note: in expansion of macro ‘SCITBX_ASSERT’ 156 | SCITBX_ASSERT(iselection[i] < selectee_size); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/c_grid_flex_conversions.h:10, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:10: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:84:46: required from here 84 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:85:45: required from here 85 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:86:36: required from here 86 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:87:36: required from here 87 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:88:36: required from here 88 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:89:36: required from here 89 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:90:37: required from here 90 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:91:39: required from here 91 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:92:39: required from here 92 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:93:39: required from here 93 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:94:39: required from here 94 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:95:39: required from here 95 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:96:53: required from here 96 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:97:53: required from here 97 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:98:53: required from here 98 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:100:50: required from here 100 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:101:51: required from here 101 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:102:55: required from here 102 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:103:55: required from here 103 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:104:55: required from here 104 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:105:58: required from here 105 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:106:53: required from here 106 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:107:53: required from here 107 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:108:53: required from here 108 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:110:54: required from here 110 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:112:46: required from here 112 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:113:46: required from here 113 | tuple_mapping_fixed_size >(); // scitbx/math/golay.h | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:115:49: required from here 115 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:117:50: required from here 117 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:118:50: required from here 118 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:119:50: required from here 119 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:120:50: required from here 120 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:122:53: required from here 122 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:123:53: required from here 123 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:124:53: required from here 124 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:127:51: required from here 127 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:128:52: required from here 128 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:129:42: required from here 129 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:130:42: required from here 130 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:131:45: required from here 131 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:132:63: required from here 132 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:133:45: required from here 133 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:134:49: required from here 134 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:135:51: required from here 135 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:136:52: required from here 136 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:137:42: required from here 137 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:138:42: required from here 138 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:139:45: required from here 139 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:140:45: required from here 140 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:141:49: required from here 141 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:143:60: required from here 143 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:144:60: required from here 144 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:146:54: required from here 146 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:147:54: required from here 147 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:148:54: required from here 148 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:149:54: required from here 149 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:150:54: required from here 150 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:151:54: required from here 151 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:153:64: required from here 153 | tuple_mapping_fixed_capacity(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 3>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:154:56: required from here 154 | tuple_mapping_fixed_capacity, 3> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 2>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:155:56: required from here 155 | tuple_mapping_fixed_capacity, 2> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 6>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:156:59: required from here 156 | tuple_mapping_fixed_capacity, 6> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 7>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:157:59: required from here 157 | tuple_mapping_fixed_capacity, 7> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:158:59: required from here 158 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:159:59: required from here 159 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:7, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/rstbx/simulation/sim_xfel1.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = cctbx::crystal_orientation]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const cctbx::crystal_orientation&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = cctbx::crystal_orientation]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:429:8: required from here 429 | def("first_index", f_w::first_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:430:8: required from here 430 | def("last_index", f_w::last_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/rstbx_symmetry_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_symmetry_constraints_ext.so.0 rstbx/symmetry/constraints/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = bool]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = bool]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/rstbx_simulation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simulation_ext.so.0 rstbx/simulation/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ Create symlinks for: 'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so.0'->'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so'->'lib/rstbx_simulation_ext.so.0.0.1' /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_float.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_float.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o lib/rstbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_ext.so.0 rstbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; Create symlinks for: 'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so.0'->'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so'->'lib/rstbx_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = float]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = signed char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = signed char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘scitbx::af::flex::type* scitbx::af::{anonymous}::from_list_or_tuple_of_lists_or_tuples(PyObject*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:138:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:154:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 154 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:190:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 190 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:206:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 206 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘std::string scitbx::af::{anonymous}::mathematica_form(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:452:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 452 | for (int i=1; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 454 | if (i != indices.size() - 1) o << ","; | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:365:26: required from here 365 | return matrix::norm_1(self); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/norms.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | for (int i=0; i scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:536:8: required from here 536 | def( | ~~~^ 537 | "double_from_byte_str", | ~~~~~~~~~~~~~~~~~~~~~~~ 538 | shared_from_byte_str, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | (arg("byte_str"))); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:119:74: required from here 119 | double (*matrix_norm_1)(const_ref const &) = matrix::norm_1; | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/norms.h:16:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 16 | for (int i=0; i scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_inf(const scitbx::af::const_ref >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:177:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/norms.h:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:178:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | .def("matrix_norm_frobenius", matrix::norm_frobenius) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/norms.h:46:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int k=0; k < a_ij.size(); ++k) norm_accu(a_ij[k]); | ~~^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = double]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o lib/rstbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_array_family_flex_ext.so.0 rstbx/array_family/ext.o rstbx/array_family/flex_rstbx_arrays.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so.0'->'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so'->'lib/rstbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::complex]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:885:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 885 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:886:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 886 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_sort.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_sort.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_weighted_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_mean_and_variance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_median.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_median.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_linear_interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:2: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/basic_statistics.h: In instantiation of ‘scitbx::math::median_statistics scitbx::math::median_functor::dispersion(const scitbx::af::ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:31:26: required from ‘static scitbx::math::median_statistics scitbx::af::boost_python::median_functor_wrapper::dispersion(wt&, const scitbx::af::const_ref&) [with FloatType = double; wt = scitbx::math::median_functor]’ 31 | return O.dispersion(af::make_ref(buffer)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:40:13: required from ‘static void scitbx::af::boost_python::median_functor_wrapper::wrap(const char*) [with FloatType = double]’ 36 | class_(name, no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | .def(init<>()) | ~~~~~~~~~~~~~~ 38 | .def(init(arg("seed"))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | .def("__call__", call, arg("data")) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | .def("dispersion", dispersion, arg("data")) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:63:41: required from here 63 | median_functor_wrapper::wrap("median_functor"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/basic_statistics.h:210:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for (int i=0; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp: In function ‘scitbx::af::flex >::type* scitbx::af::{anonymous}::array_indices_as_double_from_array_focus_dimensions(const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:128:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 128 | for(std::size_t i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec2]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = tiny]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = tiny]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = tiny]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::sym_mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::sym_mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::af::tiny; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::sym_mat3*; _Size = long unsigned int; _Tp = scitbx::sym_mat3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::mat3*; _Size = long unsigned int; _Tp = scitbx::mat3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec2; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec2*; _Size = long unsigned int; _Tp = scitbx::vec2]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/loops.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/loops.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/show_sizes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/show_sizes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/usr/lib/powerpc64le-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:202:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:202:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:203:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:203:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:214:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:214:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:215:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:215:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:224:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:224:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ g++ -o scitbx/cubicle_neighbors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicle_neighbors_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:40:53: required from here 40 | shared_wrapper, rir>::wrap("stl_vector_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:41:51: required from here 41 | shared_wrapper, rir>::wrap("stl_vector_double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:42:50: required from here 42 | shared_wrapper, rir>::wrap("stl_set_unsigned") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:48:37: required from here 48 | shared_wrapper >::wrap("mat3_int"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:49:40: required from here 49 | shared_wrapper >::wrap("tiny_int_3"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:50:40: required from here 50 | shared_wrapper >::wrap("tiny_int_4"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:51:40: required from here 51 | shared_wrapper >::wrap("tiny_int_2"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/glmtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/glmtbx/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/graphics_utils/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/graphics_utils/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicle_neighbors_ext.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicle_neighbors.hpp: In instantiation of ‘std::map > scitbx::cubicle_neighbors::neighbors_of(const scitbx::af::const_ref >&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicle_neighbors_ext.cpp:23:36: required from here 23 | .def("neighbors_of", &w_t::neighbors_of, ( | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicle_neighbors.hpp:61:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 61 | if (i_cub[0] < 0 || i_cub[0] >= n_cubicles[0]) continue; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicle_neighbors.hpp:63:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 63 | if (i_cub[1] < 0 || i_cub[1] >= n_cubicles[1]) continue; /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicle_neighbors.hpp:65:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 65 | if (i_cub[2] < 0 || i_cub[2] >= n_cubicles[2]) continue; In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicle_neighbors.hpp:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = scitbx::vec3; CubicleContentType = std::vector::cubicle_site, std::allocator::cubicle_site> >; FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicle_neighbors.hpp:43:30: required from ‘scitbx::cubicle_neighbors::cubicle_neighbors(const scitbx::af::const_ref >&, const FloatType&, const FloatType&) [with FloatType = double]’ 43 | cubicles_.i_cubicle(main_sites_cart[i_seq])); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; Value = scitbx::cubicle_neighbors<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<3>::apply::execute(PyObject*, t0, t1, t2) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector3 >&, const double&, const double&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const double&; t2 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector3 >&, const double&, const double&>; Arity = boost::mpl::size >&, const double&, const double&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const double&, const double&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const double&, const double&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const double&, const double&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const double&, const double&>; W = scitbx::cubicle_neighbors<>; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicle_neighbors_ext.cpp:16:13: required from here 15 | class_("cubicle_neighbors", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 | .def(init< | ~~~~^~~~~~ 17 | af::const_ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 18 | double const&, | ~~~~~~~~~~~~~~ 19 | double const&>(( | ~~~~~~~~~~~~~~~~ 20 | arg("main_sites_cart"), | ~~~~~~~~~~~~~~~~~~~~~~~ 21 | arg("cubicle_edge"), | ~~~~~~~~~~~~~~~~~~~~ 22 | arg("epsilon")=1.e-6))) | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/gridding.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/iso_surface/iso_surface_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/iso_surface/iso_surface_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_cubicle_neighbors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_cubicle_neighbors_ext.so.0 scitbx/cubicle_neighbors_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so.0'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' g++ -o scitbx/lbfgs/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgs/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/lbfgs_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable scitbx/lbfgs/lbfgs_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/lbfgs_fem.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_graphics_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_graphics_utils_ext.so.0 scitbx/graphics_utils/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so.0'->'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so'->'lib/scitbx_graphics_utils_ext.so.0.0.1' g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_iso_surface_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_iso_surface_ext.so.0 scitbx/iso_surface/iso_surface_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so.0'->'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so'->'lib/scitbx_iso_surface_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/linalg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_glmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_glmtbx_ext.so.0 scitbx/glmtbx/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so.0'->'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so'->'lib/scitbx_glmtbx_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb.h:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j::minimizer(const int&, const int&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, bool, const FloatType&, const FloatType&, const int&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value >; A3 = boost::python::objects::reference_to_value >; A4 = boost::python::objects::reference_to_value >; A5 = bool; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; Value = scitbx::lbfgsb::minimizer; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<9>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; PyObject = _object; t0 = const int&; t1 = const int&; t2 = scitbx::af::shared; t3 = scitbx::af::shared; t4 = scitbx::af::shared; t5 = bool; t6 = const double&; t7 = const double&; t8 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; Arity = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, not_specified, not_specified, not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = scitbx::lbfgsb::minimizer; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:20:13: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 19 | class_("minimizer", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 20 | .def(init, | ~~~~~~~~~~~~~~~~~~~~~~ 23 | af::shared, | ~~~~~~~~~~~~~~~~~~~~~~ 24 | af::shared, | ~~~~~~~~~~~~~~~~ 25 | bool, | ~~~~~ 26 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 27 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 28 | int const&>()) | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb.h:118:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 118 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb.h:118:9: note: in expansion of macro ‘SCITBX_ASSERT’ 118 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb.h:119:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 119 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb.h:119:9: note: in expansion of macro ‘SCITBX_ASSERT’ 119 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb.h:120:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 120 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb.h:120:9: note: in expansion of macro ‘SCITBX_ASSERT’ 120 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/linalg/boost_python/svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_fftpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_fftpack_ext.so.0 scitbx/fftpack/boost_python/fftpack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so.0'->'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so'->'lib/scitbx_fftpack_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/eigensystem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/eigensystem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lbfgsb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgsb_ext.so.0 scitbx/lbfgsb/boost_python/lbfgsb_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so.0'->'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so'->'lib/scitbx_lbfgsb_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lstbx/boost_python/lstbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lstbx/boost_python/normal_equations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_flex_ext.so.0 scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 g++ -o lib/scitbx_lbfgs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgs_ext.so.0 scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so.0'->'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so'->'lib/scitbx_lbfgs_ext.so.0.0.1' g++ -o scitbx/math/boost_python/basic_statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/basic_statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_array_family_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_shared_ext.so.0 scitbx/array_family/boost_python/shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp: In function ‘int scitbx::lapack::boost_python::dsyev_wrapper(const std::string&, const std::string&, const scitbx::af::ref >&, const scitbx::af::ref&, bool)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 246 | SCITBX_ASSERT(w.size() == n); | ~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:5: note: in expansion of macro ‘SCITBX_ASSERT’ 246 | SCITBX_ASSERT(w.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/math/boost_python/gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so.0'->'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so'->'lib/scitbx_array_family_shared_ext.so.0.0.1' g++ -o scitbx/math/boost_python/golay.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/golay.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/minimum_covering_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_linalg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_linalg_ext.so.0 scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so.0'->'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so'->'lib/scitbx_linalg_ext.so.0.0.1' g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/principal_axes_of_inertia.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so.0'->'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so'->'lib/scitbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/math/boost_python/row_echelon.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/row_echelon.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/chebyshev.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/chebyshev.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/icosahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/icosahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/slatec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/slatec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/line_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/line_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/r3_rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/r3_rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/resample.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/resample.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/quadrature.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/quadrature.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/unimodular_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/unimodular_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lstbx_normal_equations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lstbx_normal_equations_ext.so.0 scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so.0'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' g++ -o scitbx/math/boost_python/halton.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/halton.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/least_squares_plane.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/least_squares_plane.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/continued_fraction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/continued_fraction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/numeric_limits.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/numeric_limits.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/exp_functions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/exp_functions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/zernike.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/2d_zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/weighted_covariance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/weighted_covariance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tetrahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/tetrahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/angle_derivative.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/boost_python/angle_derivative.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/minpack/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/minpack/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/r3_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/r3_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/minpack/raw.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/minpack/levenberg_marquardt.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/minpack/ext.cpp:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/minpack/levenberg_marquardt.h: In member function ‘void scitbx::minpack::levenberg_marquardt::process_fvec(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/minpack/levenberg_marquardt.h:80:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | SCITBX_ASSERT(fvec.size() == m); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/minpack/levenberg_marquardt.h:80:9: note: in expansion of macro ‘SCITBX_ASSERT’ 80 | SCITBX_ASSERT(fvec.size() == m); | ^~~~~~~~~~~~~ g++ -o scitbx/random/boost_python/random_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/random/boost_python/random_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/random/boost_python/basic_distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/random/boost_python/basic_distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/rigid_body/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_r3_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_r3_utils_ext.so.0 scitbx/r3_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so.0'->'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so'->'lib/scitbx_r3_utils_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/vector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sparse/boost_python/vector.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sparse/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_minpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_minpack_ext.so.0 scitbx/minpack/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o scitbx/sparse/boost_python/approx_equal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sparse/boost_python/approx_equal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so.0'->'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so'->'lib/scitbx_minpack_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sparse/boost_python/random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sparse/boost_python/lu_factorization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rotr3.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/spatial_lib.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/featherstone.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/tardy.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/ext.cpp:14: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 4]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:361:21: required from ‘scitbx::rotr3 scitbx::rigid_body::joint_lib::six_dof_aja_simplified(const scitbx::vec3&, const scitbx::af::const_ref&) [with FloatType = double]’ 361 | af::tiny qe(&q[0], &q[4]); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/ext.cpp:24:49: required from here 24 | result = joint_lib::six_dof_aja_simplified(center_of_mass, q); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_matrix.h:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/spatial_lib.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/featherstone.h:683:31: required from ‘scitbx::af::shared > scitbx::rigid_body::featherstone::system_model::inverse_dynamics(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&) [with FloatType = double]’ 683 | tau_array[ib] = af::small(f[ib].begin(), f[ib].end()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/featherstone.h:705:21: required from ‘scitbx::af::shared scitbx::rigid_body::featherstone::system_model::inverse_dynamics_packed(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with FloatType = double]’ 705 | tau_array = inverse_dynamics( | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/ext.cpp:120:46: required from here 120 | .def("inverse_dynamics_packed", &wt::inverse_dynamics_packed, ( | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/mat3.h:5: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/tardy.h: In instantiation of ‘scitbx::af::shared > > scitbx::rigid_body::tardy::construct_bodies(const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const boost::python::api::object&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/tardy.h:203:54: required from ‘scitbx::rigid_body::tardy::model::model(const boost::python::api::object&, const scitbx::af::shared >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, const ft&) [with FloatType = double; ft = double]’ 203 | featherstone::system_model(construct_bodies( | ~~~~~~~~~~~~~~~~^ 204 | sites_.const_ref(), | ~~~~~~~~~~~~~~~~~~~ 205 | masses_.const_ref(), | ~~~~~~~~~~~~~~~~~~~~ 206 | tardy_tree_.attr("cluster_manager"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 | near_singular_hinges_angular_tolerance_deg_)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = scitbx::rigid_body::tardy::model<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; PyObject = _object; t0 = const boost::python::api::object&; t1 = const scitbx::af::shared >&; t2 = const scitbx::af::shared&; t3 = const boost::python::api::object&; t4 = const boost::python::api::object&; t5 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; Arity = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:344:31: required from ‘static void boost::python::detail::define_class_init_helper::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, boost::python::detail::keyword_range) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; int NDefaults = 1; boost::python::detail::keyword_range = std::pair]’ 344 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedT = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional > >; classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedVisitor = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >; W = scitbx::rigid_body::tardy::model<>; X1 = boost::python::bases >; X2 = boost::noncopyable_::noncopyable; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/ext.cpp:151:13: required from here 146 | class_ >, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | boost::noncopyable | ~~~~~~~~~~~~~~~~~~ 149 | >("tardy_model", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .enable_pickling() | ~~~~~~~~~~~~~~~~~~ 151 | .def(init< | ~~~~^~~~~~ 152 | object const&, | ~~~~~~~~~~~~~~ 153 | af::shared > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | af::shared const&, | ~~~~~~~~~~~~~~~~~~~~~~ 155 | object const&, | ~~~~~~~~~~~~~~ 156 | object const&, | ~~~~~~~~~~~~~~ 157 | optional >(( | ~~~~~~~~~~~~~~~~~~~~~~~ 158 | arg("labels"), | ~~~~~~~~~~~~~~ 159 | arg("sites"), | ~~~~~~~~~~~~~ 160 | arg("masses"), | ~~~~~~~~~~~~~~ 161 | arg("tardy_tree"), | ~~~~~~~~~~~~~~~~~~ 162 | arg("potential_obj"), | ~~~~~~~~~~~~~~~~~~~~~ 163 | arg("near_singular_hinges_angular_tolerance_deg")=5))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/tardy.h:163:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 163 | SCITBX_ASSERT(body->parent < nc); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/tardy.h:163:9: note: in expansion of macro ‘SCITBX_ASSERT’ 163 | SCITBX_ASSERT(body->parent < nc); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 1]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:648:13: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::revolute::new_q(const scitbx::af::const_ref&) const [with FloatType = double]’ 648 | af::tiny(q.begin(), q.end()))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:643:5: required from here 643 | new_q( | ^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 12]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:45:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::rbda_eq_4_13(const scitbx::af::tiny&) [with FloatType = double]’ 45 | return af::tiny(coeffs, coeffs+4*3) * ft(0.5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:279:21: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::six_dof::time_step_position(const scitbx::af::const_ref&, const ft&) const [with FloatType = double; ft = double]’ 279 | rbda_eq_4_13(unit_quaternion), w_body_frame); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:271:5: required from here 271 | time_step_position( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 16]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:79:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::d_unit_quaternion_d_qe_matrix(const scitbx::af::tiny&) [with FloatType = double]’ 79 | return af::tiny(coeffs, coeffs+4*4) / n3; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:317:58: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 317 | af::tiny d = d_unit_quaternion_d_qe_matrix(qe); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:324:24: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 324 | af::small result(cn.begin(), cn.end()); | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sparse/boost_python/sparse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/set_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/set_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_math_ext.so.0 scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_python314 -lm In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/versa_matrix.h:4: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/array_as_list.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/rigid_body/ext.cpp:3: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/set_ext.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/set_wrapper.h: In static member function ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/set_wrapper.h:52:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 52 | bp::class_ >(python_name.c_str()) | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/set_wrapper.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = unsigned int; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/set_ext.cpp:9:32: required from here 9 | set_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/set_ext.cpp:10:35: required from here 10 | set_wrapper::wrap("stl_string"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ Create symlinks for: 'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so.0'->'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so'->'lib/scitbx_math_ext.so.0.0.1' /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/stl/vector_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/vector_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/shared_plain.h:307: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_random_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_random_ext.so.0 scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so.0'->'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so'->'lib/scitbx_random_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/vector_ext.cpp:2: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/vector_ext.cpp:10:35: required from here 10 | vector_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/vector_ext.cpp:11:33: required from here 11 | vector_wrapper::wrap("double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/stl/vector_ext.cpp:14:50: required from here 14 | vector_wrapper, rir>::wrap("set_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/suffixtree/boost_python/object_extensions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_suffixtree_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_shared_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so.0'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' g++ -o scitbx/wigner/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/wigner/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_sparse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_sparse_ext.so.0 scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/scitbx_stl_set_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_set_ext.so.0 scitbx/stl/set_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o smtbx/ab_initio/ab_initio_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/ab_initio/ab_initio_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so.0'->'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so'->'lib/scitbx_stl_set_ext.so.0.0.1' g++ -o smtbx/array_family/af_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/array_family/af_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so.0'->'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so'->'lib/scitbx_sparse_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_array_family_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_array_family_ext.so.0 smtbx/array_family/af_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so.0'->'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so'->'lib/smtbx_array_family_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/constraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_rigid_body_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_rigid_body_ext.so.0 scitbx/rigid_body/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/smtbx_ab_initio_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_ab_initio_ext.so.0 smtbx/ab_initio/ab_initio_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so.0'->'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so'->'lib/smtbx_ab_initio_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so.0'->'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so'->'lib/scitbx_rigid_body_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_wigner_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_wigner_ext.so.0 scitbx/wigner/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so.0'->'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so'->'lib/scitbx_wigner_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_vector_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_vector_ext.so.0 scitbx/stl/vector_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so.0'->'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so'->'lib/scitbx_stl_vector_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_map_ext.so.0 scitbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/scitbx_suffixtree_single_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_single_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so.0'->'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so'->'lib/scitbx_stl_map_ext.so.0.0.1' Create symlinks for: 'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so.0'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/boost_python/least_squares_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/boost_python/weighting_schemes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/boost_python/least_squares.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/restraints/boost_python/origin_fixing.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/restraints/boost_python/restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/structure_factors/direct/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/array_family/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/array_family/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/array_family/flex_distl_spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/array_family/flex_distl_spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/boost_python/distltbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/boost_python/distltbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_stl_map_ext.so.0 smtbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so.0'->'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so'->'lib/smtbx_stl_map_ext.so.0.0.1' g++ -o spotfinder/diffraction/geometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/diffraction/geometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/dxtbx_toolbox/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/dxtbx_toolbox/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/dxtbx_toolbox/src -Ispotfinder/dxtbx_toolbox/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/dxtbx_toolbox/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/dxtbx_toolbox/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_constraints_ext.so.0 smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scaled_adp.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so.0'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/boost_python/hough_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/spotfinder/core_toolbox/boost_python/hough_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/std_pair_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=std_pair_ext.so.0 boost_adaptbx/std_pair_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so.0'->'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so'->'lib/std_pair_ext.so.0.0.1' g++ -o xcif/xcif_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/xcif_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_restraints_ext.so.0 smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so.0'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' g++ -o mmtbx/masks/tst_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/mmtbx/masks/tst_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_hough_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_hough_ext.so.0 spotfinder/core_toolbox/boost_python/hough_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so.0'->'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so'->'lib/spotfinder_hough_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_dxtbx_ext.so.0 spotfinder/dxtbx_toolbox/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -ldxtbxspotfinder -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so.0'->'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so'->'lib/spotfinder_dxtbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_accessors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_accessors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_accessors.cpp:15: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<1>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_accessors.cpp:127:11: required from here 127 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<4>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_accessors.cpp:145:11: required from here 145 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<2>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_accessors.cpp:172:11: required from here 172 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<3>]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_accessors.cpp:202:11: required from here 202 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_accessors.cpp:248:11: required from here 248 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_accessors.cpp:280:11: required from here 280 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_accessors.cpp:326:11: required from here 326 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_accessors.cpp:371:11: required from here 371 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/list.hpp:10, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:156:78: required from here 156 | scitbx::boost_python::container_conversions::variable_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:160:72: required from here 160 | scitbx::boost_python::container_conversions::linked_list_policy>(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:164:71: required from here 164 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:168:71: required from here 168 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:172:75: required from here 172 | scitbx::boost_python::container_conversions::fixed_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o mmtbx/masks/tst_mask -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread mmtbx/masks/tst_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lmmtbx_masks -liotbx_pdb -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm g++ -o scitbx/array_family/tst_af_1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/scoped_array.hpp:14, from /usr/include/boost/scoped_array.hpp:13, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/ref.h:10, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/tiny_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small_plain]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::small]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:621:46: required from here 621 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::shared_plain]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:624:48: required from here 624 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::shared]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:629:42: required from here 629 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_1() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:635:64: required from here 634 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 | af::versa_plain > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::versa_exercise::run_1() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:637:58: required from here 636 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 | af::versa > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/small_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = int; long unsigned int N = 128]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:41:17: required from ‘static void {anonymous}::array_exercise::run_1() [with ArrayType = scitbx::af::small_plain]’ 41 | ArrayType a5(a4.begin(), a4.begin()); | ^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:28:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 28 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_accessors -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_accessors.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/xcif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=xcif_ext.so.0 xcif/xcif_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/xcif_ext.so.0.0.1' 'lib/xcif_ext.so.0'->'lib/xcif_ext.so.0.0.1' 'lib/xcif_ext.so'->'lib/xcif_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_2 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/boost_python/regression_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=regression_test_ext.so.0 scitbx/array_family/boost_python/regression_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 g++ -o scitbx/array_family/tst_af_4.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_4.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so.0'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_5.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_af_5.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_structure_factors_direct_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_structure_factors_direct_ext.so.0 smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm g++ -o lib/spotfinder_distltbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_distltbx_ext.so.0 spotfinder/core_toolbox/boost_python/distltbx_ext.o spotfinder/diffraction/geometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so.0'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' g++ -o scitbx/array_family/tst_mat3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_mat3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so.0'->'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so'->'lib/spotfinder_distltbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_ref_matrix_facet.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_5 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_5.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lm g++ -o scitbx/array_family/tst_sym_mat3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_sym_mat3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp: In function ‘int main()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 52 | for(int i=0; i'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/timing/fftpack_timer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_mat3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lm g++ -o scitbx/fftpack/timing/test0.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/timing/test0.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_unsigned_float_arithmetic.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o scitbx/lbfgs/sdrive_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable scitbx/lbfgs/sdrive_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/error/tst_error -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/error/tst_error.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o scitbx/lbfgs/tst_lbfgs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgs/tst_lbfgs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/timing/fftpack_timer.cpp:6: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/complex_to_complex_3d.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/timing/test0.cpp:3: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/sdrive_fem.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ g++ -o scitbx/array_family/tst_sym_mat3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_sym_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lm /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_vec3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_vec3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lm g++ -o scitbx/lbfgsb/dev/driver2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/sdrive_fem -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lm g++ -o scitbx/lbfgsb/dev/driver3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver1.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver2.cpp:102:19: required from here 102 | write_ref1(" ", x); | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver2.cpp:70:11: required from here 70 | setulb( | ~~~~~~^ 71 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver3.cpp:1: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver3.cpp:82:19: required from here 82 | write_ref1(" ", wa.get1(j+1,n)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/dev/driver3.cpp:72:11: required from here 72 | setulb( | ~~~~~~^ 73 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o lib/spotfinder_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_array_family_flex_ext.so.0 spotfinder/array_family/flex_ext.o spotfinder/array_family/flex_distl_spot.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so.0'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' g++ -o scitbx/matrix/tests/tst_cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/tests/tst_cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/tests/tst -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/math/tests/tst.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o scitbx/matrix/tests/tst_givens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/tests/tst_givens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/fftpack/timing/fftpack_timer -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/fftpack/timing/fftpack_timer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/matrix/tests/tst_householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/tests/tst_householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/fftpack/timing/test0 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/fftpack/timing/test0.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/matrix/tests/tst_svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/matrix/tests/tst_svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/serialization/tst_base_256.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Iscitbx/serialization -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/serialization /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/serialization/tst_base_256.cpp g++ -o scitbx/lbfgsb/dev/driver2 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_timer -lboost_chrono -lm cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/tests/tst_sparse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Iscitbx/sparse/tests -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sparse/tests /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/scitbx/sparse/tests/tst_sparse.cpp g++ -o scitbx/lbfgsb/dev/driver3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_timer -lboost_chrono -lm cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_givens -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_givens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/serialization/tst_base_256 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/serialization/tst_base_256.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lm g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/smtbx/refinement/constraints/tests/tst_special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_cholesky -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_cholesky.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o xcif/benchmarks/bench_xcif.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/benchmarks/bench_xcif.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_householder -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_householder.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o scitbx/matrix/tests/tst_svd -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_svd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o xcif/regression/cpp/example_parse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/example_parse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/example_tokenize.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/example_tokenize.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/example_tokenize -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/example_tokenize.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/fuzz_target.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/fuzz_target.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/benchmarks/bench_xcif -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/benchmarks/bench_xcif.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o scitbx/sparse/tests/tst_sparse -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/sparse/tests/tst_sparse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lboost_thread g++ -o xcif/regression/cpp/tst_data_model.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_data_model.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_error_handling.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_error_handling.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/example_parse -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/example_parse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_infrastructure.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_infrastructure.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_infrastructure -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_infrastructure.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/fuzz_target -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/fuzz_target.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_mapped_file.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_mapped_file.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_non_strict_mode.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_non_strict_mode.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_error_handling -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_error_handling.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_numeric.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_numeric.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_mapped_file -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_mapped_file.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_quoted_string_delimiter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_quoted_string_delimiter.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_data_model -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_data_model.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_special_position -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_special_position.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o xcif/regression/cpp/tst_semicolon_field_strict.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_semicolon_field_strict.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_string_view.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_string_view.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_thread_safety.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_thread_safety.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_tokenizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/xcif/regression/cpp/tst_tokenizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_non_strict_mode -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_non_strict_mode.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_numeric -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_numeric.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_semicolon_field_strict -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_semicolon_field_strict.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_quoted_string_delimiter -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_quoted_string_delimiter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_string_view -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_string_view.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_tokenizer -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_tokenizer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_thread_safety -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_thread_safety.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lxcif -lboost_thread g++ -o scitbx/array_family/tst_af_4 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_4.o -L/usr/lib -L/usr/lib64 -L/usr/lib/powerpc64le-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/lib -lm scons: done building targets. usr+sys time: 29.00 seconds wall clock time: 13 minutes 8.77 seconds (788.77 seconds total) iconv -f ISO-8859-1 -t UTF-8 cctbx/eltbx/covalent_radii.h > covalent_radii.h mv covalent_radii.h cctbx/eltbx/covalent_radii.h dh_auto_build -- --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" pybuild --build -i python{version} -p 3.14 --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" --parallel=8 I: pybuild base:385: cp -f '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_/lib/*_ext.so '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_/scitbx/array_family/boost_python/regression_test_ext.so '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build' dh_auto_build -- --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" pybuild --build -i python{version} -p 3.14 --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" --parallel=8 I: pybuild base:385: cp -f '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_/lib/dxtbx_flumpy.so '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build' make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' # DOES NOT WORK, source code must be modified in order to find the expected # /usr/share/cctbx libtbx_env file during the build process make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars rm -fr -- debian/.debhelper/generated/libcctbx0/ debian/libcctbx0/ debian/tmp/ debian/.debhelper/generated/libcctbx-dev/ debian/libcctbx-dev/ debian/.debhelper/generated/python3-cctbx/ debian/python3-cctbx/ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' # Python modules dh_auto_install -- --name cctbx install -m0755 -d /build/reproducible-path/cctbx-2026.7\+ds2\+\~3.30.0\+ds1/debian/tmp pybuild --install -i python{version} -p 3.14 --name cctbx --parallel=8 I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir dh_auto_install --sourcedirectory=dxtbx -- --name dxtbx install -m0755 -d /build/reproducible-path/cctbx-2026.7\+ds2\+\~3.30.0\+ds1/debian/tmp pybuild --install -i python{version} -p 3.14 --name dxtbx --dir dxtbx --parallel=8 I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir # pybuild does not set properly dest-dir when name is set. So merge both installation under debian/tmp install -d debian/tmp rsync -av --ignore-existing debian/python3-cctbx/ debian/python3-dxtbx/ debian/tmp sending incremental file list usr/ usr/bin/ usr/bin/cxi.image2pickle usr/bin/cxi.image_average usr/bin/dev.dxtbx.debug_memory usr/bin/dev.dxtbx.image_availability usr/bin/dev.dxtbx.read_sequence usr/bin/dev.dxtbx.simulate_collection usr/bin/dxtbx.any2nexus usr/bin/dxtbx.depends_on usr/bin/dxtbx.detector_superpose usr/bin/dxtbx.display_parallax_correction usr/bin/dxtbx.dlsnxs2cbf usr/bin/dxtbx.image2pickle usr/bin/dxtbx.image_average usr/bin/dxtbx.install_format usr/bin/dxtbx.overload usr/bin/dxtbx.plot_detector_models usr/bin/dxtbx.print_header usr/bin/dxtbx.print_matching_images usr/bin/dxtbx.radial_average usr/bin/dxtbx.saturation usr/bin/dxtbx.show_mask_info usr/bin/dxtbx.show_matching_formats usr/bin/dxtbx.show_registry usr/lib/ usr/lib/python3.14/ usr/lib/python3.14/dist-packages/ usr/lib/python3.14/dist-packages/annlib_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_boost_thread_test_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_maximum_clique_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_metric_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_utility_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_python_streambuf_test_ext.so usr/lib/python3.14/dist-packages/boost_optional_ext.so usr/lib/python3.14/dist-packages/boost_python_hybrid_times_ext.so usr/lib/python3.14/dist-packages/boost_python_meta_ext.so usr/lib/python3.14/dist-packages/boost_rational_ext.so usr/lib/python3.14/dist-packages/boost_tuple_ext.so usr/lib/python3.14/dist-packages/cbflib_ext.so usr/lib/python3.14/dist-packages/ccp4io_adaptbx_ext.so usr/lib/python3.14/dist-packages/cctbx_adp_restraints_ext.so usr/lib/python3.14/dist-packages/cctbx_adptbx_ext.so usr/lib/python3.14/dist-packages/cctbx_anharmonic_ext.so usr/lib/python3.14/dist-packages/cctbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/cctbx_asymmetric_map_ext.so usr/lib/python3.14/dist-packages/cctbx_covariance_ext.so usr/lib/python3.14/dist-packages/cctbx_crystal_ext.so usr/lib/python3.14/dist-packages/cctbx_dmtbx_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_chemical_elements_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_covalent_radii_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_fp_fdp_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_henke_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_icsd_radii_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_neutron_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_sasaki_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_tiny_pse_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_wavelengths_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_xray_scattering_ext.so usr/lib/python3.14/dist-packages/cctbx_emma_ext.so usr/lib/python3.14/dist-packages/cctbx_french_wilson_ext.so usr/lib/python3.14/dist-packages/cctbx_geometry_ext.so usr/lib/python3.14/dist-packages/cctbx_geometry_restraints_ext.so usr/lib/python3.14/dist-packages/cctbx_maptbx_bcr_bcr_ext.so usr/lib/python3.14/dist-packages/cctbx_maptbx_ext.so usr/lib/python3.14/dist-packages/cctbx_masks_ext.so usr/lib/python3.14/dist-packages/cctbx_math_ext.so usr/lib/python3.14/dist-packages/cctbx_merging_ext.so usr/lib/python3.14/dist-packages/cctbx_miller_ext.so usr/lib/python3.14/dist-packages/cctbx_multipolar_ext.so usr/lib/python3.14/dist-packages/cctbx_orientation_ext.so usr/lib/python3.14/dist-packages/cctbx_sgtbx_asu_ext.so usr/lib/python3.14/dist-packages/cctbx_sgtbx_ext.so usr/lib/python3.14/dist-packages/cctbx_statistics_ext.so usr/lib/python3.14/dist-packages/cctbx_symmetry_search_ext.so usr/lib/python3.14/dist-packages/cctbx_translation_search_ext.so usr/lib/python3.14/dist-packages/cctbx_uctbx_ext.so usr/lib/python3.14/dist-packages/cctbx_xray_ext.so usr/lib/python3.14/dist-packages/cctbx_xray_observations_ext.so usr/lib/python3.14/dist-packages/cma_es_ext.so usr/lib/python3.14/dist-packages/determine_unit_cell_ext.so usr/lib/python3.14/dist-packages/dxtbx_ext.so usr/lib/python3.14/dist-packages/dxtbx_flumpy.so usr/lib/python3.14/dist-packages/dxtbx_format_image_ext.so usr/lib/python3.14/dist-packages/dxtbx_format_nexus_ext.so usr/lib/python3.14/dist-packages/dxtbx_imageset_ext.so 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usr/lib/python3.14/dist-packages/iotbx_scalepack_ext.so usr/lib/python3.14/dist-packages/iotbx_shelx_ext.so usr/lib/python3.14/dist-packages/iotbx_wildcard_ext.so usr/lib/python3.14/dist-packages/iotbx_xplor_ext.so usr/lib/python3.14/dist-packages/mmtbx_alignment_ext.so usr/lib/python3.14/dist-packages/mmtbx_building_loop_closure_ext.so usr/lib/python3.14/dist-packages/mmtbx_bulk_solvent_ext.so usr/lib/python3.14/dist-packages/mmtbx_den_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_dssp_ext.so usr/lib/python3.14/dist-packages/mmtbx_dynamics_ext.so usr/lib/python3.14/dist-packages/mmtbx_f_model_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_asa_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_clash_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_indexing_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_primitive_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_shared_types_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.so usr/lib/python3.14/dist-packages/mmtbx_hydrogens_ext.so usr/lib/python3.14/dist-packages/mmtbx_masks_ext.so usr/lib/python3.14/dist-packages/mmtbx_max_lik_ext.so usr/lib/python3.14/dist-packages/mmtbx_mosaic_ext.so usr/lib/python3.14/dist-packages/mmtbx_ncs_cartesian_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_ncs_ext.so usr/lib/python3.14/dist-packages/mmtbx_pair_interaction_ext.so usr/lib/python3.14/dist-packages/mmtbx_probe_ext.so usr/lib/python3.14/dist-packages/mmtbx_ramachandran_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_reduce_ext.so usr/lib/python3.14/dist-packages/mmtbx_reference_coordinate_ext.so usr/lib/python3.14/dist-packages/mmtbx_rotamer_fit_ext.so usr/lib/python3.14/dist-packages/mmtbx_rsr_ext.so usr/lib/python3.14/dist-packages/mmtbx_scaling_ext.so usr/lib/python3.14/dist-packages/mmtbx_secondary_structure_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_decompose_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_optimise_amplitudes_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_utils_ext.so usr/lib/python3.14/dist-packages/mmtbx_utils_ext.so usr/lib/python3.14/dist-packages/mmtbx_validation_ramachandran_ext.so usr/lib/python3.14/dist-packages/omptbx_ext.so usr/lib/python3.14/dist-packages/regression_test_ext.so usr/lib/python3.14/dist-packages/rstbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/rstbx_bandpass_ext.so usr/lib/python3.14/dist-packages/rstbx_bpcx_detector_model_ext.so usr/lib/python3.14/dist-packages/rstbx_diffraction_fastbragg_ext.so usr/lib/python3.14/dist-packages/rstbx_ext.so usr/lib/python3.14/dist-packages/rstbx_indexing_api_ext.so usr/lib/python3.14/dist-packages/rstbx_integration_ext.so usr/lib/python3.14/dist-packages/rstbx_simage_ext.so usr/lib/python3.14/dist-packages/rstbx_simulation_ext.so usr/lib/python3.14/dist-packages/rstbx_symmetry_constraints_ext.so usr/lib/python3.14/dist-packages/scitbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/scitbx_array_family_shared_ext.so usr/lib/python3.14/dist-packages/scitbx_cubicle_neighbors_ext.so usr/lib/python3.14/dist-packages/scitbx_fftpack_ext.so usr/lib/python3.14/dist-packages/scitbx_glmtbx_ext.so usr/lib/python3.14/dist-packages/scitbx_graphics_utils_ext.so usr/lib/python3.14/dist-packages/scitbx_iso_surface_ext.so usr/lib/python3.14/dist-packages/scitbx_lbfgs_ext.so usr/lib/python3.14/dist-packages/scitbx_lbfgsb_ext.so usr/lib/python3.14/dist-packages/scitbx_linalg_ext.so usr/lib/python3.14/dist-packages/scitbx_lstbx_normal_equations_ext.so usr/lib/python3.14/dist-packages/scitbx_math_ext.so usr/lib/python3.14/dist-packages/scitbx_minpack_ext.so usr/lib/python3.14/dist-packages/scitbx_r3_utils_ext.so usr/lib/python3.14/dist-packages/scitbx_random_ext.so usr/lib/python3.14/dist-packages/scitbx_rigid_body_ext.so usr/lib/python3.14/dist-packages/scitbx_sparse_ext.so usr/lib/python3.14/dist-packages/scitbx_stl_map_ext.so usr/lib/python3.14/dist-packages/scitbx_stl_set_ext.so usr/lib/python3.14/dist-packages/scitbx_stl_vector_ext.so usr/lib/python3.14/dist-packages/scitbx_suffixtree_shared_ext.so usr/lib/python3.14/dist-packages/scitbx_suffixtree_single_ext.so usr/lib/python3.14/dist-packages/scitbx_wigner_ext.so usr/lib/python3.14/dist-packages/smtbx_ab_initio_ext.so usr/lib/python3.14/dist-packages/smtbx_array_family_ext.so usr/lib/python3.14/dist-packages/smtbx_refinement_constraints_ext.so usr/lib/python3.14/dist-packages/smtbx_refinement_least_squares_ext.so usr/lib/python3.14/dist-packages/smtbx_refinement_restraints_ext.so usr/lib/python3.14/dist-packages/smtbx_stl_map_ext.so usr/lib/python3.14/dist-packages/smtbx_structure_factors_direct_ext.so usr/lib/python3.14/dist-packages/spotfinder_array_family_flex_ext.so usr/lib/python3.14/dist-packages/spotfinder_distltbx_ext.so usr/lib/python3.14/dist-packages/spotfinder_dxtbx_ext.so usr/lib/python3.14/dist-packages/spotfinder_hough_ext.so usr/lib/python3.14/dist-packages/std_pair_ext.so usr/lib/python3.14/dist-packages/xcif_ext.so usr/lib/python3.14/dist-packages/annlib_adaptbx/ usr/lib/python3.14/dist-packages/annlib_adaptbx/__init__.py usr/lib/python3.14/dist-packages/annlib_adaptbx/run_tests.py usr/lib/python3.14/dist-packages/annlib_adaptbx/annlib_adaptbx/ usr/lib/python3.14/dist-packages/annlib_adaptbx/annlib_adaptbx/__init__.py usr/lib/python3.14/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py usr/lib/python3.14/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py usr/lib/python3.14/dist-packages/annlib_adaptbx/source_generators/ usr/lib/python3.14/dist-packages/annlib_adaptbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/annlib_adaptbx/source_generators/generate_all.py usr/lib/python3.14/dist-packages/boost/ usr/lib/python3.14/dist-packages/boost/__init__.py usr/lib/python3.14/dist-packages/boost/optional.py usr/lib/python3.14/dist-packages/boost/python.py usr/lib/python3.14/dist-packages/boost/rational.py usr/lib/python3.14/dist-packages/boost/std_pair.py usr/lib/python3.14/dist-packages/boost/tuple.py usr/lib/python3.14/dist-packages/boost_adaptbx/ usr/lib/python3.14/dist-packages/boost_adaptbx/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/hybrid_times.py usr/lib/python3.14/dist-packages/boost_adaptbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/boost_adaptbx/run_tests.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/ usr/lib/python3.14/dist-packages/boost_adaptbx/boost/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/optional.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/python.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/rational.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/std_pair.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/tuple.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/ usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/divide_by_zero.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/double_overflow.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/gcd.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/inexact.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/int_overflow.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/lcm.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/segmentation_fault.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/show_environ_usage.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/show_platform_info.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/ usr/lib/python3.14/dist-packages/boost_adaptbx/graph/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/breadth_first_search.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/clustering_algorithm.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/connected_component_algorithm.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/graph_structure_comparison.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/maximum_clique.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/metric.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/min_cut_max_flow.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/minimum_cut_enumerate.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/utility.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/ usr/lib/python3.14/dist-packages/cbflib_adaptbx/__init__.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/copy_files.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/exercise_compression.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/run_tests.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/command_line/ usr/lib/python3.14/dist-packages/cbflib_adaptbx/command_line/__init__.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/command_line/dump.py usr/lib/python3.14/dist-packages/ccp4io_adaptbx/ usr/lib/python3.14/dist-packages/ccp4io_adaptbx/__init__.py usr/lib/python3.14/dist-packages/ccp4io_adaptbx/copy_files.py usr/lib/python3.14/dist-packages/ccp4io_adaptbx/tst.py usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/ usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/METADATA usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/RECORD usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/WHEEL usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/top_level.txt usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/licenses/ usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/licenses/LICENSE.txt usr/lib/python3.14/dist-packages/cctbx/ usr/lib/python3.14/dist-packages/cctbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/adptbx.py usr/lib/python3.14/dist-packages/cctbx/anharmonic.py usr/lib/python3.14/dist-packages/cctbx/crystal_orientation.py usr/lib/python3.14/dist-packages/cctbx/dmtbx.py usr/lib/python3.14/dist-packages/cctbx/euclidean_model_matching.py usr/lib/python3.14/dist-packages/cctbx/french_wilson.py usr/lib/python3.14/dist-packages/cctbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/cctbx/math_module.py usr/lib/python3.14/dist-packages/cctbx/multipolar.py usr/lib/python3.14/dist-packages/cctbx/r_free_utils.py usr/lib/python3.14/dist-packages/cctbx/run_examples.py usr/lib/python3.14/dist-packages/cctbx/run_tests.py usr/lib/python3.14/dist-packages/cctbx/statistics.py usr/lib/python3.14/dist-packages/cctbx/symmetry_search.py usr/lib/python3.14/dist-packages/cctbx/translation_search.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/ usr/lib/python3.14/dist-packages/cctbx/adp_restraints/__init__.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/energies.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/flags.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/tst_ext.py usr/lib/python3.14/dist-packages/cctbx/array_family/ usr/lib/python3.14/dist-packages/cctbx/array_family/__init__.py usr/lib/python3.14/dist-packages/cctbx/array_family/flex.py usr/lib/python3.14/dist-packages/cctbx/command_line/ usr/lib/python3.14/dist-packages/cctbx/command_line/__init__.py usr/lib/python3.14/dist-packages/cctbx/command_line/auto_sharpen.py usr/lib/python3.14/dist-packages/cctbx/command_line/brehm_diederichs.py usr/lib/python3.14/dist-packages/cctbx/command_line/cctbx_test_nightly.py usr/lib/python3.14/dist-packages/cctbx/command_line/cod_select_and_pickle.py usr/lib/python3.14/dist-packages/cctbx/command_line/diffuse.py usr/lib/python3.14/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py usr/lib/python3.14/dist-packages/cctbx/command_line/euclidean_model_matching.py usr/lib/python3.14/dist-packages/cctbx/command_line/find_reticular_twin_laws.py usr/lib/python3.14/dist-packages/cctbx/command_line/form_factor_query.py usr/lib/python3.14/dist-packages/cctbx/command_line/precession_view.py usr/lib/python3.14/dist-packages/cctbx/command_line/qscore.py usr/lib/python3.14/dist-packages/cctbx/command_line/samosa_join.py usr/lib/python3.14/dist-packages/cctbx/command_line/samosa_scale.py usr/lib/python3.14/dist-packages/cctbx/command_line/segment_and_split_map.py usr/lib/python3.14/dist-packages/cctbx/command_line/space_group_info.py usr/lib/python3.14/dist-packages/cctbx/command_line/structure_factor_timings.py usr/lib/python3.14/dist-packages/cctbx/command_line/subgroups.py usr/lib/python3.14/dist-packages/cctbx/command_line/version.py usr/lib/python3.14/dist-packages/cctbx/command_line/wavelength_units.py usr/lib/python3.14/dist-packages/cctbx/covariance/ usr/lib/python3.14/dist-packages/cctbx/covariance/__init__.py usr/lib/python3.14/dist-packages/cctbx/crystal/ usr/lib/python3.14/dist-packages/cctbx/crystal/__init__.py usr/lib/python3.14/dist-packages/cctbx/crystal/burzlaff_zimmermann_dewolff.py usr/lib/python3.14/dist-packages/cctbx/crystal/close_packing.py usr/lib/python3.14/dist-packages/cctbx/crystal/coordination_sequences.py usr/lib/python3.14/dist-packages/cctbx/crystal/direct_space_asu.py usr/lib/python3.14/dist-packages/cctbx/crystal/distance_based_connectivity.py usr/lib/python3.14/dist-packages/cctbx/crystal/find_best_cell.py usr/lib/python3.14/dist-packages/cctbx/crystal/reindex.py usr/lib/python3.14/dist-packages/cctbx/crystal/super_cell.py usr/lib/python3.14/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py usr/lib/python3.14/dist-packages/cctbx/crystal/tst_ext.py usr/lib/python3.14/dist-packages/cctbx/crystal/tst_super_cell.py usr/lib/python3.14/dist-packages/cctbx/development/ usr/lib/python3.14/dist-packages/cctbx/development/__init__.py usr/lib/python3.14/dist-packages/cctbx/development/approx_amplitude_vs_resolution.py usr/lib/python3.14/dist-packages/cctbx/development/cns_density_modification.py usr/lib/python3.14/dist-packages/cctbx/development/create_models_or_maps.py usr/lib/python3.14/dist-packages/cctbx/development/debug_utils.py usr/lib/python3.14/dist-packages/cctbx/development/direct_or_fft.py usr/lib/python3.14/dist-packages/cctbx/development/electron_density_sampling.py usr/lib/python3.14/dist-packages/cctbx/development/fmt_utils.py usr/lib/python3.14/dist-packages/cctbx/development/github.py usr/lib/python3.14/dist-packages/cctbx/development/make_cns_input.py usr/lib/python3.14/dist-packages/cctbx/development/make_settings.py usr/lib/python3.14/dist-packages/cctbx/development/random_structure.py usr/lib/python3.14/dist-packages/cctbx/development/run_shelx.py usr/lib/python3.14/dist-packages/cctbx/development/run_shelx76.py usr/lib/python3.14/dist-packages/cctbx/development/space_group_option_parser.py usr/lib/python3.14/dist-packages/cctbx/development/structure_factor_utils.py usr/lib/python3.14/dist-packages/cctbx/development/tst_cns_epsilon.py usr/lib/python3.14/dist-packages/cctbx/development/tst_cns_hl.py usr/lib/python3.14/dist-packages/cctbx/eltbx/ usr/lib/python3.14/dist-packages/cctbx/eltbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/eltbx/attenuation_coefficient.py usr/lib/python3.14/dist-packages/cctbx/eltbx/chemical_elements.py usr/lib/python3.14/dist-packages/cctbx/eltbx/covalent_radii.py usr/lib/python3.14/dist-packages/cctbx/eltbx/distance_based_connectivity.py usr/lib/python3.14/dist-packages/cctbx/eltbx/e_scattering.py usr/lib/python3.14/dist-packages/cctbx/eltbx/formula.py usr/lib/python3.14/dist-packages/cctbx/eltbx/fp_fdp.py usr/lib/python3.14/dist-packages/cctbx/eltbx/gaussian_fit.py usr/lib/python3.14/dist-packages/cctbx/eltbx/henke.py usr/lib/python3.14/dist-packages/cctbx/eltbx/icsd_radii.py usr/lib/python3.14/dist-packages/cctbx/eltbx/neutron.py usr/lib/python3.14/dist-packages/cctbx/eltbx/read_custom_scattering_dict.py usr/lib/python3.14/dist-packages/cctbx/eltbx/sasaki.py usr/lib/python3.14/dist-packages/cctbx/eltbx/tiny_pse.py usr/lib/python3.14/dist-packages/cctbx/eltbx/van_der_waals_radii.py usr/lib/python3.14/dist-packages/cctbx/eltbx/wavelengths.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/ usr/lib/python3.14/dist-packages/cctbx/eltbx/development/__init__.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/combine_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/e_scattering_plots.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/format_gaussian_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/hydrogen_plots.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_approx.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_cross_validation.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_kissel.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_section61_io.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/kissel_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/kissel_io.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/rez_rez_grant.py usr/lib/python3.14/dist-packages/cctbx/eltbx/xray_scattering/ usr/lib/python3.14/dist-packages/cctbx/eltbx/xray_scattering/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/ usr/lib/python3.14/dist-packages/cctbx/examples/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/adp_symmetry_constraints.py usr/lib/python3.14/dist-packages/cctbx/examples/all_axes.py usr/lib/python3.14/dist-packages/cctbx/examples/analyze_adp.py usr/lib/python3.14/dist-packages/cctbx/examples/ccp4_map.py usr/lib/python3.14/dist-packages/cctbx/examples/change_hand_p31.py usr/lib/python3.14/dist-packages/cctbx/examples/convert_ccp4_symop_lib.py usr/lib/python3.14/dist-packages/cctbx/examples/cr2o3_consistency_checks.py usr/lib/python3.14/dist-packages/cctbx/examples/cr2o3_primitive_cell.py usr/lib/python3.14/dist-packages/cctbx/examples/exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/f_model_example.py usr/lib/python3.14/dist-packages/cctbx/examples/fft_map_electron_density_around_atom.py usr/lib/python3.14/dist-packages/cctbx/examples/find_distances_using_cpp_objects.py usr/lib/python3.14/dist-packages/cctbx/examples/find_sys_abs_equiv_space_groups.py usr/lib/python3.14/dist-packages/cctbx/examples/g_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/g_exp_i_partial_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/getting_started.py usr/lib/python3.14/dist-packages/cctbx/examples/hirshfeld_test.py usr/lib/python3.14/dist-packages/cctbx/examples/le_page_1982_vs_lebedev_2005.py usr/lib/python3.14/dist-packages/cctbx/examples/lebedev_2005_perturbation.py usr/lib/python3.14/dist-packages/cctbx/examples/list_non_principal_continuous_shifts.py usr/lib/python3.14/dist-packages/cctbx/examples/location_part.py usr/lib/python3.14/dist-packages/cctbx/examples/map_skewness.py usr/lib/python3.14/dist-packages/cctbx/examples/maximum_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/miller_common_sets.py usr/lib/python3.14/dist-packages/cctbx/examples/miller_transform.py usr/lib/python3.14/dist-packages/cctbx/examples/neutron_structure_factors.py usr/lib/python3.14/dist-packages/cctbx/examples/phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/examples/quartz_structure.py usr/lib/python3.14/dist-packages/cctbx/examples/random_f_calc.py usr/lib/python3.14/dist-packages/cctbx/examples/random_puckers.py usr/lib/python3.14/dist-packages/cctbx/examples/reduced_cell_two_folds.py usr/lib/python3.14/dist-packages/cctbx/examples/site_symmetry_constraints.py usr/lib/python3.14/dist-packages/cctbx/examples/site_symmetry_table.py usr/lib/python3.14/dist-packages/cctbx/examples/space_group_matrices.py usr/lib/python3.14/dist-packages/cctbx/examples/space_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/steve_collins.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_2.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_3.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_4.py usr/lib/python3.14/dist-packages/cctbx/examples/sub_group_graph.py usr/lib/python3.14/dist-packages/cctbx/examples/symops_530.py usr/lib/python3.14/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_space_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py usr/lib/python3.14/dist-packages/cctbx/examples/unit_cell_minimizers.py usr/lib/python3.14/dist-packages/cctbx/examples/unit_cell_refinement.py usr/lib/python3.14/dist-packages/cctbx/examples/view_fft_map.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/ usr/lib/python3.14/dist-packages/cctbx/examples/merging/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/data_subset.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/data_utilities.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/show_results.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/sigma_correction.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/task4.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test1.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test_cc_half.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/tst_permutations.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/ usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/join.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/scale.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/ usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py usr/lib/python3.14/dist-packages/cctbx/geometry/ usr/lib/python3.14/dist-packages/cctbx/geometry/__init__.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/ usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/__init__.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/auto_linking_types.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/base_geometry.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/distance_least_squares.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/energies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/flags.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/lbfgs.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/linking_class.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/manager.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/standard_cif_links.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_ext.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_motif.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py usr/lib/python3.14/dist-packages/cctbx/macro_mol/ usr/lib/python3.14/dist-packages/cctbx/macro_mol/__init__.py usr/lib/python3.14/dist-packages/cctbx/macro_mol/rotation_parameters.py usr/lib/python3.14/dist-packages/cctbx/maptbx/ usr/lib/python3.14/dist-packages/cctbx/maptbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/maptbx/auto_sharpen.py usr/lib/python3.14/dist-packages/cctbx/maptbx/box.py usr/lib/python3.14/dist-packages/cctbx/maptbx/fsc_curve.py usr/lib/python3.14/dist-packages/cctbx/maptbx/map_symmetry.py usr/lib/python3.14/dist-packages/cctbx/maptbx/mask.py usr/lib/python3.14/dist-packages/cctbx/maptbx/mem.py usr/lib/python3.14/dist-packages/cctbx/maptbx/minimization.py usr/lib/python3.14/dist-packages/cctbx/maptbx/prepare_map_for_docking.py usr/lib/python3.14/dist-packages/cctbx/maptbx/prepare_map_for_refinement.py usr/lib/python3.14/dist-packages/cctbx/maptbx/qscore.py usr/lib/python3.14/dist-packages/cctbx/maptbx/real_space_refinement_simple.py usr/lib/python3.14/dist-packages/cctbx/maptbx/refine_scales_errors.py usr/lib/python3.14/dist-packages/cctbx/maptbx/refine_sharpening.py usr/lib/python3.14/dist-packages/cctbx/maptbx/resolution_from_map_and_model.py usr/lib/python3.14/dist-packages/cctbx/maptbx/segment_and_split_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/servalcat_difference_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_MapPeakLocator.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_asymmetric_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_atom_curves.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_bcr.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_ccp.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_interpolation.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_interpolation_2.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_loft.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_mask.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_qscore.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_target_and_gradients.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/ usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/__init__.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/bcr.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/compute_tables.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/qmap.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_adp_refine.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_example.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_qmap_02.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_table.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_two_atoms.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_vrm.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_vrm2.py usr/lib/python3.14/dist-packages/cctbx/masks/ usr/lib/python3.14/dist-packages/cctbx/masks/__init__.py usr/lib/python3.14/dist-packages/cctbx/merging/ usr/lib/python3.14/dist-packages/cctbx/merging/__init__.py usr/lib/python3.14/dist-packages/cctbx/merging/brehm_diederichs.py usr/lib/python3.14/dist-packages/cctbx/miller/ usr/lib/python3.14/dist-packages/cctbx/miller/__init__.py usr/lib/python3.14/dist-packages/cctbx/miller/display.py usr/lib/python3.14/dist-packages/cctbx/miller/reindexing.py usr/lib/python3.14/dist-packages/cctbx/miller/tst_map_to_asu_isym.py usr/lib/python3.14/dist-packages/cctbx/miller/tst_reindexing.py usr/lib/python3.14/dist-packages/cctbx/neutron/ usr/lib/python3.14/dist-packages/cctbx/neutron/__init__.py usr/lib/python3.14/dist-packages/cctbx/omz/ usr/lib/python3.14/dist-packages/cctbx/omz/__init__.py usr/lib/python3.14/dist-packages/cctbx/omz/bfgs.py usr/lib/python3.14/dist-packages/cctbx/omz/cif_refine.py usr/lib/python3.14/dist-packages/cctbx/omz/cod_refine.py usr/lib/python3.14/dist-packages/cctbx/omz/cod_select_and_pickle.py usr/lib/python3.14/dist-packages/cctbx/omz/dev.py usr/lib/python3.14/dist-packages/cctbx/omz/eval_iso_vs_refined.py usr/lib/python3.14/dist-packages/cctbx/omz/pdb_dev.py usr/lib/python3.14/dist-packages/cctbx/omz/tardy_adaptor.py usr/lib/python3.14/dist-packages/cctbx/omz/tst_bfgs.py usr/lib/python3.14/dist-packages/cctbx/omz/tst_dev.py usr/lib/python3.14/dist-packages/cctbx/regression/ usr/lib/python3.14/dist-packages/cctbx/regression/__init__.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_constraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_amplitude_normalisation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_change_basis.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_connectivity.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_connectivity_allsym.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_coordination_sequences.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_create_models_or_maps.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal_close_packing.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_diffuse.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_direct_scaling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_direct_space_asu.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_emma.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_expand_to_p1.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_f_model.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fast_nv1995.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_find_best_cell.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_french_wilson.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints_2.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_modifications.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_modifications_rm.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_pickling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grouped_data.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_krivy_gruber.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_loc_res.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_map_is_periodic.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_box.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_mask.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_math_module.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_mem.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_mem_2.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_data_manipulation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_fft_map.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_lookup_utils.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_statistics.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_niggli_reduction_cpp.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_pair_asu_table.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_pointgroup_tools.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_r_free_utils.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_refine_xray_curvs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_reflection_statistics.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sampled_model_density.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_denominators.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_harker.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_show_cosets.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sphericity.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_statistics_graphs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_triplet_generator.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_twin_target.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_wavelength_units.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_web_change_basis.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_weighting_schemes.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_wilson_plot.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_derivatives.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_fast_gradients.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_minimization.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_minimization_failure.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_target_functors.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/bravais_types.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/cosets.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/harker.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/literal_description.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/plane_groups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/pointgroup_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/reticular_pg_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/reticular_twin_laws.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/show_cosets.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/sub_lattice_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/subgroups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/symbol_confidence.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/sys_abs_equiv.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/check_redundancies.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/cut_plane.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/facet_analysis.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/reference_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/short_cuts.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py usr/lib/python3.14/dist-packages/cctbx/source_generators/ usr/lib/python3.14/dist-packages/cctbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/cctbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/ usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/generate_henke_cpp.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/generate_sasaki_cpp.py usr/lib/python3.14/dist-packages/cctbx/uctbx/ usr/lib/python3.14/dist-packages/cctbx/uctbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/uctbx/gruber_1973.py usr/lib/python3.14/dist-packages/cctbx/uctbx/gruber_1973_table_1.py usr/lib/python3.14/dist-packages/cctbx/uctbx/krivy_gruber_1976.py usr/lib/python3.14/dist-packages/cctbx/uctbx/reduction_base.py usr/lib/python3.14/dist-packages/cctbx/uctbx/determine_unit_cell/ usr/lib/python3.14/dist-packages/cctbx/uctbx/determine_unit_cell/__init__.py usr/lib/python3.14/dist-packages/cctbx/web/ usr/lib/python3.14/dist-packages/cctbx/web/__init__.py usr/lib/python3.14/dist-packages/cctbx/web/all_axes.py usr/lib/python3.14/dist-packages/cctbx/web/browse_settings.py usr/lib/python3.14/dist-packages/cctbx/web/cgi_utils.py usr/lib/python3.14/dist-packages/cctbx/web/change_basis.py usr/lib/python3.14/dist-packages/cctbx/web/change_hand.py usr/lib/python3.14/dist-packages/cctbx/web/change_setting.py usr/lib/python3.14/dist-packages/cctbx/web/dispatcher.py usr/lib/python3.14/dist-packages/cctbx/web/emma.py usr/lib/python3.14/dist-packages/cctbx/web/explore_symmetry.py usr/lib/python3.14/dist-packages/cctbx/web/frac_cart.py usr/lib/python3.14/dist-packages/cctbx/web/io_utils.py usr/lib/python3.14/dist-packages/cctbx/web/iotbx_cif_validate.py usr/lib/python3.14/dist-packages/cctbx/web/lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/web/libtbx_help.py usr/lib/python3.14/dist-packages/cctbx/web/multiple_cell.py usr/lib/python3.14/dist-packages/cctbx/web/phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/web/replay.py usr/lib/python3.14/dist-packages/cctbx/web/shelx.py usr/lib/python3.14/dist-packages/cctbx/web/structure_factors.py usr/lib/python3.14/dist-packages/cctbx/web/structure_factors_pdb.py usr/lib/python3.14/dist-packages/cctbx/web/wyckoff.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/ usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/__init__.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/guide_to_notation.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/jv_asu.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/jv_index.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/jvx.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/web_links.py usr/lib/python3.14/dist-packages/cctbx/xray/ usr/lib/python3.14/dist-packages/cctbx/xray/__init__.py usr/lib/python3.14/dist-packages/cctbx/xray/ext.py usr/lib/python3.14/dist-packages/cctbx/xray/minimization.py usr/lib/python3.14/dist-packages/cctbx/xray/observation_types.py usr/lib/python3.14/dist-packages/cctbx/xray/scatterer.py usr/lib/python3.14/dist-packages/cctbx/xray/structure.py usr/lib/python3.14/dist-packages/cctbx/xray/target_functors.py usr/lib/python3.14/dist-packages/cctbx/xray/weighting_schemes.py usr/lib/python3.14/dist-packages/cctbx/xray/observations/ usr/lib/python3.14/dist-packages/cctbx/xray/observations/__init__.py usr/lib/python3.14/dist-packages/cctbx/xray/observations/tst_observations.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/ usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/__init__.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/algorithm.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/from_scatterers.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/from_scatterers_fft.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/global_counters.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/gradient_flags.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/gradients.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/gradients_base.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/gradients_direct.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/gradients_fft.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/manager.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/misc.py usr/lib/python3.14/dist-packages/cctbx/xray/targets/ usr/lib/python3.14/dist-packages/cctbx/xray/targets/__init__.py usr/lib/python3.14/dist-packages/cctbx/xray/targets/r1.py usr/lib/python3.14/dist-packages/cctbx/xray/targets/tst_r1.py usr/lib/python3.14/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py usr/lib/python3.14/dist-packages/cctbx_website/ usr/lib/python3.14/dist-packages/cctbx_website/__init__.py usr/lib/python3.14/dist-packages/cctbx_website/libtbx_refresh.py usr/lib/python3.14/dist-packages/cctbx_website/run_tests.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/ usr/lib/python3.14/dist-packages/cctbx_website/command_line/__init__.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/comment_to_docstring.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/edit_for_boost.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/edit_html.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/run_pdoc_cctbx_api.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/tst_comment_to_docstring.py usr/lib/python3.14/dist-packages/cctbx_website/regression/ usr/lib/python3.14/dist-packages/cctbx_website/regression/__init__.py usr/lib/python3.14/dist-packages/cctbx_website/regression/exercise.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_10_doc_programming_tips_1.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_11_script_1.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_12_script_compare_ss.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_13_script_ideal_ss.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_15_doc_models_hierarchy.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_17_script_rfactors.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_18_doc_programming_tips_2.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_19_doc_programming_tips_3.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_1_template.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_2_doc_hlo_intro.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_3_doc_hlo_model_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_4_doc_hlo_data_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_5_doc_hlo_map_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_7_doc_low_flex_advanced.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_8_doc_maps_intro.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_9_doc_maps_boxing.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_py_from_html.py usr/lib/python3.14/dist-packages/cma_es/ usr/lib/python3.14/dist-packages/cma_es/__init__.py usr/lib/python3.14/dist-packages/cma_es/cma_es_interface.py usr/lib/python3.14/dist-packages/cma_es/run_tests.py usr/lib/python3.14/dist-packages/cma_es/tst_cma_es.py usr/lib/python3.14/dist-packages/cootbx/ usr/lib/python3.14/dist-packages/cootbx/__init__.py usr/lib/python3.14/dist-packages/cootbx/hydrogens_button.py usr/lib/python3.14/dist-packages/cootbx/interactive_edit.py usr/lib/python3.14/dist-packages/cootbx/ligand_checklist.py usr/lib/python3.14/dist-packages/cootbx/simple_zoom_list.py usr/lib/python3.14/dist-packages/cootbx/validation_lists.py usr/lib/python3.14/dist-packages/cootbx/view_refinement.py usr/lib/python3.14/dist-packages/cootbx/watch_file.py usr/lib/python3.14/dist-packages/cootbx/xmlrpc_server.py usr/lib/python3.14/dist-packages/dxtbx-3.30.0.dist-info/ usr/lib/python3.14/dist-packages/dxtbx-3.30.0.dist-info/METADATA usr/lib/python3.14/dist-packages/dxtbx-3.30.0.dist-info/RECORD usr/lib/python3.14/dist-packages/dxtbx-3.30.0.dist-info/WHEEL usr/lib/python3.14/dist-packages/dxtbx-3.30.0.dist-info/entry_points.txt usr/lib/python3.14/dist-packages/dxtbx-3.30.0.dist-info/licenses/ usr/lib/python3.14/dist-packages/dxtbx-3.30.0.dist-info/licenses/AUTHORS usr/lib/python3.14/dist-packages/dxtbx-3.30.0.dist-info/licenses/LICENSE.txt usr/lib/python3.14/dist-packages/dxtbx/ usr/lib/python3.14/dist-packages/dxtbx/CMakeLists.txt usr/lib/python3.14/dist-packages/dxtbx/__init__.py usr/lib/python3.14/dist-packages/dxtbx/datablock.py usr/lib/python3.14/dist-packages/dxtbx/dxtbx_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/dxtbx_flumpy.pyi usr/lib/python3.14/dist-packages/dxtbx/dxtbx_format_image_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/dxtbx_format_nexus_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/dxtbx_imageset_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/dxtbx_masking_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/dxtbx_model_ext.pyi usr/lib/python3.14/dist-packages/dxtbx/error.h usr/lib/python3.14/dist-packages/dxtbx/ext.py usr/lib/python3.14/dist-packages/dxtbx/filecache.py usr/lib/python3.14/dist-packages/dxtbx/filecache_controller.py usr/lib/python3.14/dist-packages/dxtbx/flumpy.py usr/lib/python3.14/dist-packages/dxtbx/imageset.h usr/lib/python3.14/dist-packages/dxtbx/imageset.py usr/lib/python3.14/dist-packages/dxtbx/py.typed usr/lib/python3.14/dist-packages/dxtbx/sequence_filenames.py usr/lib/python3.14/dist-packages/dxtbx/version.py usr/lib/python3.14/dist-packages/dxtbx/array_family/ usr/lib/python3.14/dist-packages/dxtbx/array_family/flex_table.h usr/lib/python3.14/dist-packages/dxtbx/array_family/flex_table_suite.h usr/lib/python3.14/dist-packages/dxtbx/array_family/ref_pickle_double_buffered.h usr/lib/python3.14/dist-packages/dxtbx/boost_python/ usr/lib/python3.14/dist-packages/dxtbx/boost_python/compression.cc usr/lib/python3.14/dist-packages/dxtbx/boost_python/compression.h usr/lib/python3.14/dist-packages/dxtbx/boost_python/ext.cpp usr/lib/python3.14/dist-packages/dxtbx/boost_python/flumpy.cc usr/lib/python3.14/dist-packages/dxtbx/boost_python/imageset_ext.cc usr/lib/python3.14/dist-packages/dxtbx/command_line/ usr/lib/python3.14/dist-packages/dxtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/dxtbx/command_line/any2nexus.py usr/lib/python3.14/dist-packages/dxtbx/command_line/debug_memory.py usr/lib/python3.14/dist-packages/dxtbx/command_line/depends_on.py usr/lib/python3.14/dist-packages/dxtbx/command_line/detector_superpose.py usr/lib/python3.14/dist-packages/dxtbx/command_line/display_parallax_correction.py usr/lib/python3.14/dist-packages/dxtbx/command_line/dlsnxs2cbf.py usr/lib/python3.14/dist-packages/dxtbx/command_line/image2pickle.py usr/lib/python3.14/dist-packages/dxtbx/command_line/image_availability.py usr/lib/python3.14/dist-packages/dxtbx/command_line/image_average.py usr/lib/python3.14/dist-packages/dxtbx/command_line/install_format.py usr/lib/python3.14/dist-packages/dxtbx/command_line/overload.py usr/lib/python3.14/dist-packages/dxtbx/command_line/plot_detector_models.py usr/lib/python3.14/dist-packages/dxtbx/command_line/print_header.py usr/lib/python3.14/dist-packages/dxtbx/command_line/print_matching_images.py usr/lib/python3.14/dist-packages/dxtbx/command_line/radial_average.py usr/lib/python3.14/dist-packages/dxtbx/command_line/read_sequence.py usr/lib/python3.14/dist-packages/dxtbx/command_line/saturation.py usr/lib/python3.14/dist-packages/dxtbx/command_line/show_mask_info.py usr/lib/python3.14/dist-packages/dxtbx/command_line/show_matching_formats.py usr/lib/python3.14/dist-packages/dxtbx/command_line/show_registry.py usr/lib/python3.14/dist-packages/dxtbx/command_line/simulate_collection.py usr/lib/python3.14/dist-packages/dxtbx/data/ usr/lib/python3.14/dist-packages/dxtbx/data/__init__.py usr/lib/python3.14/dist-packages/dxtbx/data/detectors.lib usr/lib/python3.14/dist-packages/dxtbx/data/beamline_defs/ usr/lib/python3.14/dist-packages/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py usr/lib/python3.14/dist-packages/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py usr/lib/python3.14/dist-packages/dxtbx/data/beamline_defs/__init__.py usr/lib/python3.14/dist-packages/dxtbx/example/ usr/lib/python3.14/dist-packages/dxtbx/example/resolution_corners.py usr/lib/python3.14/dist-packages/dxtbx/example/to_xds.py usr/lib/python3.14/dist-packages/dxtbx/format/ usr/lib/python3.14/dist-packages/dxtbx/format/Format.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatBruker.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatBrukerFixedChi.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatBrukerModern.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBF.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFCspad.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFFull.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFFullByteOffset.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFFullPilatus.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMini.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniADSCHF4M.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniEiger.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniEigerChessID7B2.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniEigerPetraP14.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniEigerQuadroED1.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniEigerReverse.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatus.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS12M.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusHelpers.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusReverse.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMultiTile.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatCBFMultiTileHierarchy.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatDIP2030b.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatEDFALS733.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatESSNMX.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatESSNMXLaue.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatGatanDM4.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatHDF5.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatHDF5ESRFJungfrau4M.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatHDF5EigerNearlyNexus.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatHDF5Lambda.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatHDF5PAL.py 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usr/lib/python3.14/dist-packages/dxtbx/format/FormatNXmxED.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatNXmxEigerFilewriter.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatNexus.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatNexusJungfrauExt.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatNexusJungfrauHack.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatNexusTimepix2M.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatNoniusKappaCCD.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatPY.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatPYmultitile.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatPYunspecified.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatPYunspecifiedStill.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatPilatusHelpers.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatRAXIS.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatRAXISII.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatRAXISIVSpring8.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatROD.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSER.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMV.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSC.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCCetaD.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCDBG.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCNoDateStamp.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCSN.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCSN442.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCSN445.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCSN457.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCSN905.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCSN915.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCSN920.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCSN926.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCSN928.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVADSCSNAPSID19.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVCMOS1.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVHamamatsu.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVJHSim.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVNOIR.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVRigaku.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVRigakuA200.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVRigakuEiger.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatSMVRigakuPilatus.py 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usr/lib/python3.14/dist-packages/dxtbx/format/FormatTRPX.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatXDS.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatXTC.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatXTCCspad.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatXTCEpix.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatXTCJungfrau.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatXTCMultipleDetectors.py usr/lib/python3.14/dist-packages/dxtbx/format/FormatXTCRayonix.py usr/lib/python3.14/dist-packages/dxtbx/format/README.md usr/lib/python3.14/dist-packages/dxtbx/format/Registry.py usr/lib/python3.14/dist-packages/dxtbx/format/TemplatePYCXI31.py usr/lib/python3.14/dist-packages/dxtbx/format/TemplatePYCXI32.py usr/lib/python3.14/dist-packages/dxtbx/format/TemplatePYCXI41.py usr/lib/python3.14/dist-packages/dxtbx/format/TemplatePYCXI51.py usr/lib/python3.14/dist-packages/dxtbx/format/TemplatePYCXI61.py 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usr/lib/python3.14/dist-packages/dxtbx/masking/SmarGonShadowMask.py usr/lib/python3.14/dist-packages/dxtbx/masking/__init__.py usr/lib/python3.14/dist-packages/dxtbx/masking/goniometer_shadow_masking.h usr/lib/python3.14/dist-packages/dxtbx/masking/masking.h usr/lib/python3.14/dist-packages/dxtbx/masking/boost_python/ usr/lib/python3.14/dist-packages/dxtbx/masking/boost_python/ext.cc usr/lib/python3.14/dist-packages/dxtbx/model/ usr/lib/python3.14/dist-packages/dxtbx/model/__init__.py usr/lib/python3.14/dist-packages/dxtbx/model/beam.h usr/lib/python3.14/dist-packages/dxtbx/model/beam.py usr/lib/python3.14/dist-packages/dxtbx/model/compare.py usr/lib/python3.14/dist-packages/dxtbx/model/crystal.h usr/lib/python3.14/dist-packages/dxtbx/model/crystal.py usr/lib/python3.14/dist-packages/dxtbx/model/detector.h usr/lib/python3.14/dist-packages/dxtbx/model/detector.py usr/lib/python3.14/dist-packages/dxtbx/model/detector_helpers.py usr/lib/python3.14/dist-packages/dxtbx/model/detector_helpers_types.py usr/lib/python3.14/dist-packages/dxtbx/model/experiment.h usr/lib/python3.14/dist-packages/dxtbx/model/experiment_list.h usr/lib/python3.14/dist-packages/dxtbx/model/experiment_list.py usr/lib/python3.14/dist-packages/dxtbx/model/goniometer.h usr/lib/python3.14/dist-packages/dxtbx/model/goniometer.py usr/lib/python3.14/dist-packages/dxtbx/model/history.h usr/lib/python3.14/dist-packages/dxtbx/model/kappa_goniometer.h usr/lib/python3.14/dist-packages/dxtbx/model/model_helpers.h usr/lib/python3.14/dist-packages/dxtbx/model/multi_axis_goniometer.h usr/lib/python3.14/dist-packages/dxtbx/model/panel.h usr/lib/python3.14/dist-packages/dxtbx/model/panel_data.h usr/lib/python3.14/dist-packages/dxtbx/model/parallax_correction.h usr/lib/python3.14/dist-packages/dxtbx/model/pixel_to_millimeter.h usr/lib/python3.14/dist-packages/dxtbx/model/profile.py usr/lib/python3.14/dist-packages/dxtbx/model/ray_intersection.h usr/lib/python3.14/dist-packages/dxtbx/model/scan.h usr/lib/python3.14/dist-packages/dxtbx/model/scan.py usr/lib/python3.14/dist-packages/dxtbx/model/scan_helpers.h usr/lib/python3.14/dist-packages/dxtbx/model/scan_helpers.py usr/lib/python3.14/dist-packages/dxtbx/model/spectrum.h usr/lib/python3.14/dist-packages/dxtbx/model/tof_helpers.py usr/lib/python3.14/dist-packages/dxtbx/model/virtual_panel.h usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/ usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/beam.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/crystal.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/detector.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/experiment.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/experiment_list.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/goniometer.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/history.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/kappa_goniometer.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/model_ext.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/multi_axis_goniometer.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/panel.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/parallax_correction.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/pickle_suite.h usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/pixel_to_millimeter.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/scan.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/scan_helpers.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/spectrum.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/to_from_dict.h usr/lib/python3.14/dist-packages/dxtbx/nexus/ usr/lib/python3.14/dist-packages/dxtbx/nexus/__init__.py usr/lib/python3.14/dist-packages/dxtbx/serialize/ usr/lib/python3.14/dist-packages/dxtbx/serialize/__init__.py usr/lib/python3.14/dist-packages/dxtbx/serialize/filename.py usr/lib/python3.14/dist-packages/dxtbx/serialize/imageset.py usr/lib/python3.14/dist-packages/dxtbx/serialize/load.py usr/lib/python3.14/dist-packages/dxtbx/serialize/xds.py usr/lib/python3.14/dist-packages/dxtbx/util/ usr/lib/python3.14/dist-packages/dxtbx/util/__init__.py usr/lib/python3.14/dist-packages/dxtbx/util/dlsnxs2cbf.py usr/lib/python3.14/dist-packages/dxtbx/util/rotate_and_average.py usr/lib/python3.14/dist-packages/fable/ usr/lib/python3.14/dist-packages/fable/__init__.py usr/lib/python3.14/dist-packages/fable/cout.py usr/lib/python3.14/dist-packages/fable/equivalence.py usr/lib/python3.14/dist-packages/fable/intrinsics.py usr/lib/python3.14/dist-packages/fable/read.py usr/lib/python3.14/dist-packages/fable/run_tests.py usr/lib/python3.14/dist-packages/fable/simple_compilation.py usr/lib/python3.14/dist-packages/fable/tokenization.py usr/lib/python3.14/dist-packages/fable/tst_cout.py usr/lib/python3.14/dist-packages/fable/tst_cout_compile.py usr/lib/python3.14/dist-packages/fable/tst_equivalence.py usr/lib/python3.14/dist-packages/fable/tst_ext.py usr/lib/python3.14/dist-packages/fable/tst_read.py usr/lib/python3.14/dist-packages/fable/utils.py usr/lib/python3.14/dist-packages/fable/command_line/ usr/lib/python3.14/dist-packages/fable/command_line/__init__.py usr/lib/python3.14/dist-packages/fable/command_line/cout.py usr/lib/python3.14/dist-packages/fable/command_line/fem_include_search_paths.py usr/lib/python3.14/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py usr/lib/python3.14/dist-packages/fable/command_line/read.py usr/lib/python3.14/dist-packages/fable/command_line/show_calls.py usr/lib/python3.14/dist-packages/fable/command_line/split.py usr/lib/python3.14/dist-packages/fast_linalg/ usr/lib/python3.14/dist-packages/fast_linalg/__init__.py usr/lib/python3.14/dist-packages/fftw3tbx/ usr/lib/python3.14/dist-packages/fftw3tbx/__init__.py usr/lib/python3.14/dist-packages/fftw3tbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/fftw3tbx/tst_ext.py usr/lib/python3.14/dist-packages/gltbx/ usr/lib/python3.14/dist-packages/gltbx/__init__.py usr/lib/python3.14/dist-packages/gltbx/extract_opengl_specs.py usr/lib/python3.14/dist-packages/gltbx/fonts.py usr/lib/python3.14/dist-packages/gltbx/generate_defines_bpl.py usr/lib/python3.14/dist-packages/gltbx/generate_fonts_ucs_cpp.py usr/lib/python3.14/dist-packages/gltbx/generate_functions_bpl.py usr/lib/python3.14/dist-packages/gltbx/gl.py usr/lib/python3.14/dist-packages/gltbx/gl_managed.py usr/lib/python3.14/dist-packages/gltbx/glu.py usr/lib/python3.14/dist-packages/gltbx/images.py usr/lib/python3.14/dist-packages/gltbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/gltbx/quadrics.py usr/lib/python3.14/dist-packages/gltbx/run_tests.py usr/lib/python3.14/dist-packages/gltbx/tst.py usr/lib/python3.14/dist-packages/gltbx/tst_ellipsoids.py usr/lib/python3.14/dist-packages/gltbx/tst_fonts.py usr/lib/python3.14/dist-packages/gltbx/tst_viewer_utils.py usr/lib/python3.14/dist-packages/gltbx/util.py usr/lib/python3.14/dist-packages/gltbx/viewer_utils.py usr/lib/python3.14/dist-packages/gltbx/wx_cube.py usr/lib/python3.14/dist-packages/gltbx/wx_ellipsoids_test.py usr/lib/python3.14/dist-packages/gltbx/wx_motion_on_tab.py usr/lib/python3.14/dist-packages/gltbx/wx_scene.py usr/lib/python3.14/dist-packages/gltbx/wx_viewer.py usr/lib/python3.14/dist-packages/gltbx/wx_viewer_example.py usr/lib/python3.14/dist-packages/gltbx/wx_viewer_leapmotion.py usr/lib/python3.14/dist-packages/gltbx/wx_viewers_images.py usr/lib/python3.14/dist-packages/gltbx/command_line/ usr/lib/python3.14/dist-packages/gltbx/command_line/__init__.py usr/lib/python3.14/dist-packages/gltbx/command_line/try_imports.py usr/lib/python3.14/dist-packages/iotbx/ usr/lib/python3.14/dist-packages/iotbx/__init__.py usr/lib/python3.14/dist-packages/iotbx/builders.py usr/lib/python3.14/dist-packages/iotbx/builders_depending_on_smtbx.py usr/lib/python3.14/dist-packages/iotbx/cif_mtz_data_labels.py usr/lib/python3.14/dist-packages/iotbx/cli_parser.py usr/lib/python3.14/dist-packages/iotbx/crystal_symmetry_from_any.py usr/lib/python3.14/dist-packages/iotbx/csv_utils.py usr/lib/python3.14/dist-packages/iotbx/data_plots.py usr/lib/python3.14/dist-packages/iotbx/extract_xtal_data.py usr/lib/python3.14/dist-packages/iotbx/file_reader.py usr/lib/python3.14/dist-packages/iotbx/format.py usr/lib/python3.14/dist-packages/iotbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/iotbx/logfiles.py usr/lib/python3.14/dist-packages/iotbx/map_manager.py usr/lib/python3.14/dist-packages/iotbx/map_model_manager.py usr/lib/python3.14/dist-packages/iotbx/map_tools.py usr/lib/python3.14/dist-packages/iotbx/merging_statistics.py usr/lib/python3.14/dist-packages/iotbx/mtrix_biomt.py usr/lib/python3.14/dist-packages/iotbx/option_parser.py usr/lib/python3.14/dist-packages/iotbx/phases.py usr/lib/python3.14/dist-packages/iotbx/phil.py usr/lib/python3.14/dist-packages/iotbx/poscar.py usr/lib/python3.14/dist-packages/iotbx/pymol.py usr/lib/python3.14/dist-packages/iotbx/ranges.py usr/lib/python3.14/dist-packages/iotbx/reflection_file_converter.py usr/lib/python3.14/dist-packages/iotbx/reflection_file_editor.py usr/lib/python3.14/dist-packages/iotbx/reflection_file_reader.py usr/lib/python3.14/dist-packages/iotbx/reflection_file_utils.py usr/lib/python3.14/dist-packages/iotbx/run_tests.py usr/lib/python3.14/dist-packages/iotbx/simple_parser.py usr/lib/python3.14/dist-packages/iotbx/symmetry.py usr/lib/python3.14/dist-packages/iotbx/table_one.py usr/lib/python3.14/dist-packages/iotbx/wildcard.py usr/lib/python3.14/dist-packages/iotbx/PrettyPrint/ usr/lib/python3.14/dist-packages/iotbx/PrettyPrint/__init__.py usr/lib/python3.14/dist-packages/iotbx/PrettyPrint/tables.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/ usr/lib/python3.14/dist-packages/iotbx/bioinformatics/__init__.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/alignment_as_hsearch.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/ebi_wu_blast_xml.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/homologues.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/local_blast.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/ncbi_blast_xml.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/pdb_info.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/pubmed.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/structure.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/xmlbuild.py usr/lib/python3.14/dist-packages/iotbx/ccp4_map/ usr/lib/python3.14/dist-packages/iotbx/ccp4_map/__init__.py usr/lib/python3.14/dist-packages/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py usr/lib/python3.14/dist-packages/iotbx/ccp4_map/tst.py usr/lib/python3.14/dist-packages/iotbx/cif/ usr/lib/python3.14/dist-packages/iotbx/cif/__init__.py usr/lib/python3.14/dist-packages/iotbx/cif/builders.py usr/lib/python3.14/dist-packages/iotbx/cif/citations.py usr/lib/python3.14/dist-packages/iotbx/cif/cod_tools.py usr/lib/python3.14/dist-packages/iotbx/cif/crystal_symmetry_from_cif.py usr/lib/python3.14/dist-packages/iotbx/cif/errors.py usr/lib/python3.14/dist-packages/iotbx/cif/geometry.py usr/lib/python3.14/dist-packages/iotbx/cif/model.py usr/lib/python3.14/dist-packages/iotbx/cif/restraint_file_merge.py usr/lib/python3.14/dist-packages/iotbx/cif/restraints.py usr/lib/python3.14/dist-packages/iotbx/cif/validation.py usr/lib/python3.14/dist-packages/iotbx/cns/ usr/lib/python3.14/dist-packages/iotbx/cns/__init__.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_from_inp.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_from_sdb.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_utils.py usr/lib/python3.14/dist-packages/iotbx/cns/index_fobs_sigma_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/miller_array.py usr/lib/python3.14/dist-packages/iotbx/cns/pdb_remarks.py usr/lib/python3.14/dist-packages/iotbx/cns/reflection_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/sdb_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/sdb_writer.py usr/lib/python3.14/dist-packages/iotbx/cns/space_group_symbols.py usr/lib/python3.14/dist-packages/iotbx/cns/tst_cns.py usr/lib/python3.14/dist-packages/iotbx/cns/xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/ usr/lib/python3.14/dist-packages/iotbx/command_line/__init__.py usr/lib/python3.14/dist-packages/iotbx/command_line/biomt_reconstruction.py usr/lib/python3.14/dist-packages/iotbx/command_line/blast_pdb.py usr/lib/python3.14/dist-packages/iotbx/command_line/build_phil_cache.py usr/lib/python3.14/dist-packages/iotbx/command_line/cbf_read.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.as_miller_arrays.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.validate.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif_as_pdb.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.reflection_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.sdb_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns_as_mtz.py usr/lib/python3.14/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py usr/lib/python3.14/dist-packages/iotbx/command_line/csv_as_mtz.py usr/lib/python3.14/dist-packages/iotbx/command_line/dano_as_amplitudes.py usr/lib/python3.14/dist-packages/iotbx/command_line/detector_image_as_png.py usr/lib/python3.14/dist-packages/iotbx/command_line/distance_least_squares.py usr/lib/python3.14/dist-packages/iotbx/command_line/dtrek.to_cns.py usr/lib/python3.14/dist-packages/iotbx/command_line/effective_resolution.py usr/lib/python3.14/dist-packages/iotbx/command_line/emma.py usr/lib/python3.14/dist-packages/iotbx/command_line/explore_metric_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/export_scalepack_unmerged.py usr/lib/python3.14/dist-packages/iotbx/command_line/file_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py usr/lib/python3.14/dist-packages/iotbx/command_line/french_wilson.py usr/lib/python3.14/dist-packages/iotbx/command_line/get_pubmed_citation.py usr/lib/python3.14/dist-packages/iotbx/command_line/lattice_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/merging_statistics.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtrix_reconstruction.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtz.dump.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtz_as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/patterson_map.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.b_factor_stats.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.hierarchy.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.insert_scale_records.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.join_fragment_files.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.print_sequence.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_add_conformations.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_as_fasta.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_get_citation.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_labels_comparison.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_labels_diff.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_remediator.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_show_connectivity.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_split_models.py usr/lib/python3.14/dist-packages/iotbx/command_line/phil.py usr/lib/python3.14/dist-packages/iotbx/command_line/poscar_as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_accumulation.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_as_cns.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_converter.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_editor.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_statistics.py usr/lib/python3.14/dist-packages/iotbx/command_line/reindex.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.dump_as_python.py usr/lib/python3.14/dist-packages/iotbx/command_line/show_distances.py usr/lib/python3.14/dist-packages/iotbx/command_line/show_systematic_absences.py usr/lib/python3.14/dist-packages/iotbx/command_line/simple_map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/command_line/sort_atoms.py usr/lib/python3.14/dist-packages/iotbx/command_line/split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/symmetry_search.py usr/lib/python3.14/dist-packages/iotbx/command_line/unique_with_biomt.py usr/lib/python3.14/dist-packages/iotbx/command_line/xplor.map.show_summary.py usr/lib/python3.14/dist-packages/iotbx/data_manager/ usr/lib/python3.14/dist-packages/iotbx/data_manager/__init__.py usr/lib/python3.14/dist-packages/iotbx/data_manager/common.py usr/lib/python3.14/dist-packages/iotbx/data_manager/json.py usr/lib/python3.14/dist-packages/iotbx/data_manager/map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/data_manager/miller_array.py usr/lib/python3.14/dist-packages/iotbx/data_manager/model.py usr/lib/python3.14/dist-packages/iotbx/data_manager/ncs_spec.py usr/lib/python3.14/dist-packages/iotbx/data_manager/phil.py usr/lib/python3.14/dist-packages/iotbx/data_manager/real_map.py usr/lib/python3.14/dist-packages/iotbx/data_manager/restraint.py usr/lib/python3.14/dist-packages/iotbx/data_manager/sequence.py usr/lib/python3.14/dist-packages/iotbx/data_manager/yaml.py usr/lib/python3.14/dist-packages/iotbx/detectors/ usr/lib/python3.14/dist-packages/iotbx/detectors/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/active_area_filter.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc_module.py usr/lib/python3.14/dist-packages/iotbx/detectors/beam_center_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/bruker.py usr/lib/python3.14/dist-packages/iotbx/detectors/cbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/cspad_detector_formats.py usr/lib/python3.14/dist-packages/iotbx/detectors/detectorbase.py usr/lib/python3.14/dist-packages/iotbx/detectors/dtrek.py usr/lib/python3.14/dist-packages/iotbx/detectors/edf.py usr/lib/python3.14/dist-packages/iotbx/detectors/eiger.py usr/lib/python3.14/dist-packages/iotbx/detectors/eiger_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/generic_detector.py usr/lib/python3.14/dist-packages/iotbx/detectors/hamamatsu.py usr/lib/python3.14/dist-packages/iotbx/detectors/image_from_http_request.py usr/lib/python3.14/dist-packages/iotbx/detectors/macscience.py usr/lib/python3.14/dist-packages/iotbx/detectors/mar.py usr/lib/python3.14/dist-packages/iotbx/detectors/marIP.py usr/lib/python3.14/dist-packages/iotbx/detectors/noir.py usr/lib/python3.14/dist-packages/iotbx/detectors/npy.py usr/lib/python3.14/dist-packages/iotbx/detectors/pilatus_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/pilatus_slice.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxis.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxis_nonsquare.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxisbase.py usr/lib/python3.14/dist-packages/iotbx/detectors/saturn.py usr/lib/python3.14/dist-packages/iotbx/detectors/test_mar.py usr/lib/python3.14/dist-packages/iotbx/detectors/test_raxis2.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_adsc.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_cbf_comp_read_meth.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_debug_write.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_detectors.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_py_cbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/url_support.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/ usr/lib/python3.14/dist-packages/iotbx/detectors/context/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/camera_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/config_detector.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/endstation.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/spot_xy_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/util/ usr/lib/python3.14/dist-packages/iotbx/detectors/util/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/util/filters.py usr/lib/python3.14/dist-packages/iotbx/dsn6/ usr/lib/python3.14/dist-packages/iotbx/dsn6/__init__.py usr/lib/python3.14/dist-packages/iotbx/dsn6/tst.py usr/lib/python3.14/dist-packages/iotbx/dtrek/ usr/lib/python3.14/dist-packages/iotbx/dtrek/__init__.py usr/lib/python3.14/dist-packages/iotbx/dtrek/crystal_symmetry_from_ref.py usr/lib/python3.14/dist-packages/iotbx/dtrek/dtrek_symmetry_dict.py usr/lib/python3.14/dist-packages/iotbx/dtrek/reflnlist_reader.py usr/lib/python3.14/dist-packages/iotbx/examples/ usr/lib/python3.14/dist-packages/iotbx/examples/__init__.py usr/lib/python3.14/dist-packages/iotbx/examples/direct_methods_light.py usr/lib/python3.14/dist-packages/iotbx/examples/libtbx_phil_examples.py usr/lib/python3.14/dist-packages/iotbx/examples/mtz_convert_free_to_work.py usr/lib/python3.14/dist-packages/iotbx/examples/mtz_free_flipper.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_shake.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_split_chains.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_symmetry_copies.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_to_map_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdbx_mmcif_tutorial.py usr/lib/python3.14/dist-packages/iotbx/examples/prepare_model_for_rsr.py usr/lib/python3.14/dist-packages/iotbx/examples/recalculate_phenix_refine_r_factors.py usr/lib/python3.14/dist-packages/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py usr/lib/python3.14/dist-packages/iotbx/examples/tst_mtz_free_flipper.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/ usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/__init__.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v2_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v3_better.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py usr/lib/python3.14/dist-packages/iotbx/file_io/ usr/lib/python3.14/dist-packages/iotbx/file_io/__init__.py usr/lib/python3.14/dist-packages/iotbx/file_io/_maps.py usr/lib/python3.14/dist-packages/iotbx/file_io/detection.py usr/lib/python3.14/dist-packages/iotbx/file_io/reader.py usr/lib/python3.14/dist-packages/iotbx/file_io/text_detection.py usr/lib/python3.14/dist-packages/iotbx/fullprof/ usr/lib/python3.14/dist-packages/iotbx/fullprof/__init__.py usr/lib/python3.14/dist-packages/iotbx/fullprof/read_pcr.py usr/lib/python3.14/dist-packages/iotbx/fullprof/write_pcr.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/ usr/lib/python3.14/dist-packages/iotbx/gui_tools/__init__.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/cif_conversions.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/import_data_and_flags.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/models.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/reflections.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/tst.py usr/lib/python3.14/dist-packages/iotbx/kriber/ usr/lib/python3.14/dist-packages/iotbx/kriber/__init__.py usr/lib/python3.14/dist-packages/iotbx/kriber/strudat.py usr/lib/python3.14/dist-packages/iotbx/kriber/tst_strudat.py usr/lib/python3.14/dist-packages/iotbx/mrcfile/ usr/lib/python3.14/dist-packages/iotbx/mrcfile/__init__.py usr/lib/python3.14/dist-packages/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py usr/lib/python3.14/dist-packages/iotbx/mtz/ usr/lib/python3.14/dist-packages/iotbx/mtz/__init__.py usr/lib/python3.14/dist-packages/iotbx/mtz/crystal_symmetry_from_mtz.py usr/lib/python3.14/dist-packages/iotbx/mtz/extract_from_symmetry_lib.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_dano.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_ext.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_miller_dict.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_unmerged.py usr/lib/python3.14/dist-packages/iotbx/ncs/ usr/lib/python3.14/dist-packages/iotbx/ncs/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/ usr/lib/python3.14/dist-packages/iotbx/pdb/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/aa_utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/amino_acid_codes.py usr/lib/python3.14/dist-packages/iotbx/pdb/atom_name_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/atom_selection.py usr/lib/python3.14/dist-packages/iotbx/pdb/cryst1_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/crystal_symmetry_from_pdb.py usr/lib/python3.14/dist-packages/iotbx/pdb/download.py usr/lib/python3.14/dist-packages/iotbx/pdb/experiment_type.py usr/lib/python3.14/dist-packages/iotbx/pdb/extract_rfactors_resolutions_sigma.py usr/lib/python3.14/dist-packages/iotbx/pdb/fetch.py usr/lib/python3.14/dist-packages/iotbx/pdb/forward_compatible_pdb_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/pdb/hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/hybrid_36.py usr/lib/python3.14/dist-packages/iotbx/pdb/misc_records_output.py usr/lib/python3.14/dist-packages/iotbx/pdb/mmcif.py usr/lib/python3.14/dist-packages/iotbx/pdb/modified_aa_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/modified_rna_dna_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/nucleic_acid_codes.py usr/lib/python3.14/dist-packages/iotbx/pdb/pdb_v3_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/pdb/pdbe.py usr/lib/python3.14/dist-packages/iotbx/pdb/rcsb.py usr/lib/python3.14/dist-packages/iotbx/pdb/records.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_290_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_2_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_3_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/rna_dna_detection.py usr/lib/python3.14/dist-packages/iotbx/pdb/secondary_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_selection.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_selection_string.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_ext.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_input_pickling.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_pdb.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_secondary_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_secondary_structure_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_tls.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/web_service_api.py usr/lib/python3.14/dist-packages/iotbx/pdb/xray_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/ usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/remediator.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/tst_remediator.py usr/lib/python3.14/dist-packages/iotbx/programs/ usr/lib/python3.14/dist-packages/iotbx/programs/__init__.py usr/lib/python3.14/dist-packages/iotbx/programs/box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/programs/split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/programs/unique_with_biomt.py usr/lib/python3.14/dist-packages/iotbx/regression/ usr/lib/python3.14/dist-packages/iotbx/regression/__init__.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_add_conformations.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_all_chain_ids.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_atom_selections_10k.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_bioinformatics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cif_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cli_parser.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_csv_utils.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_data_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_data_plots.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_examples.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_extract_xtal_data.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_fetch.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_file_io.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_file_reader.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_generate_n_char_string.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_group_rounding.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_id_str.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_lattice_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager_wrapping.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_4.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_tools.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_merging_statistics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_miller_sort_asu.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_input.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_multimodel.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_segids.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mrc_io.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mtz_as_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_patterson.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_as_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_as_fasta.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_cif_cells.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_link_records.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_phases.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_phil.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_poscar.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_editor.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_reader.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_utils.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_statistics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reindex.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_restraints_merge.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_show_systematic_absences.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_simple_map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_simple_parser.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_sort_atoms.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_split_models.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_text_detection.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_wildcard.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_xray_scale.py usr/lib/python3.14/dist-packages/iotbx/regression/utils.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/ usr/lib/python3.14/dist-packages/iotbx/regression/ncs/__init__.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_input.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py usr/lib/python3.14/dist-packages/iotbx/scalepack/ usr/lib/python3.14/dist-packages/iotbx/scalepack/__init__.py usr/lib/python3.14/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py usr/lib/python3.14/dist-packages/iotbx/scalepack/merge.py usr/lib/python3.14/dist-packages/iotbx/scalepack/no_merge_original_index.py usr/lib/python3.14/dist-packages/iotbx/scalepack/space_group_dictionary.py usr/lib/python3.14/dist-packages/iotbx/scalepack/tst_merge.py usr/lib/python3.14/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py usr/lib/python3.14/dist-packages/iotbx/shelx/ usr/lib/python3.14/dist-packages/iotbx/shelx/__init__.py usr/lib/python3.14/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py usr/lib/python3.14/dist-packages/iotbx/shelx/errors.py usr/lib/python3.14/dist-packages/iotbx/shelx/fcf.py usr/lib/python3.14/dist-packages/iotbx/shelx/fvar_encoding.py usr/lib/python3.14/dist-packages/iotbx/shelx/hklf.py usr/lib/python3.14/dist-packages/iotbx/shelx/lexer.py usr/lib/python3.14/dist-packages/iotbx/shelx/parsers.py usr/lib/python3.14/dist-packages/iotbx/shelx/tokens.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_fvar_encoding.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_hklf.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_lex_parse_build.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_writer.py usr/lib/python3.14/dist-packages/iotbx/shelx/write_ins.py usr/lib/python3.14/dist-packages/iotbx/shelx/writer.py usr/lib/python3.14/dist-packages/iotbx/solve/ usr/lib/python3.14/dist-packages/iotbx/solve/__init__.py usr/lib/python3.14/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py usr/lib/python3.14/dist-packages/iotbx/solve/fpfm_reader.py usr/lib/python3.14/dist-packages/iotbx/xds/ usr/lib/python3.14/dist-packages/iotbx/xds/__init__.py usr/lib/python3.14/dist-packages/iotbx/xds/blank_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/correction.py usr/lib/python3.14/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py usr/lib/python3.14/dist-packages/iotbx/xds/gain_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/geometry.py usr/lib/python3.14/dist-packages/iotbx/xds/integrate_hkl.py usr/lib/python3.14/dist-packages/iotbx/xds/read_ascii.py usr/lib/python3.14/dist-packages/iotbx/xds/spot_xds.py usr/lib/python3.14/dist-packages/iotbx/xds/xds_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/xds_inp.py usr/lib/python3.14/dist-packages/iotbx/xds/xparm.py usr/lib/python3.14/dist-packages/iotbx/xplor/ usr/lib/python3.14/dist-packages/iotbx/xplor/__init__.py usr/lib/python3.14/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py usr/lib/python3.14/dist-packages/iotbx/xplor/ext.py usr/lib/python3.14/dist-packages/iotbx/xplor/map.py usr/lib/python3.14/dist-packages/iotbx/xplor/tst_xplormap.py usr/lib/python3.14/dist-packages/libtbx/ usr/lib/python3.14/dist-packages/libtbx/__init__.py usr/lib/python3.14/dist-packages/libtbx/assert_utils.py usr/lib/python3.14/dist-packages/libtbx/binary_search.py usr/lib/python3.14/dist-packages/libtbx/callbacks.py usr/lib/python3.14/dist-packages/libtbx/citations.py usr/lib/python3.14/dist-packages/libtbx/clear_paths.py usr/lib/python3.14/dist-packages/libtbx/cli.py usr/lib/python3.14/dist-packages/libtbx/cluster.py usr/lib/python3.14/dist-packages/libtbx/clusterTests.py usr/lib/python3.14/dist-packages/libtbx/code_analysis.py usr/lib/python3.14/dist-packages/libtbx/complex_math.py usr/lib/python3.14/dist-packages/libtbx/configure.py usr/lib/python3.14/dist-packages/libtbx/console_utils.py usr/lib/python3.14/dist-packages/libtbx/containers.py usr/lib/python3.14/dist-packages/libtbx/cpp_function_name.py usr/lib/python3.14/dist-packages/libtbx/crossmingw.py usr/lib/python3.14/dist-packages/libtbx/dlite.py usr/lib/python3.14/dist-packages/libtbx/easy_mp.py usr/lib/python3.14/dist-packages/libtbx/easy_pickle.py usr/lib/python3.14/dist-packages/libtbx/easy_profile.py usr/lib/python3.14/dist-packages/libtbx/easy_run.py usr/lib/python3.14/dist-packages/libtbx/env_config.py usr/lib/python3.14/dist-packages/libtbx/file_clutter.py usr/lib/python3.14/dist-packages/libtbx/find_reference_cycles.py usr/lib/python3.14/dist-packages/libtbx/forward_compatibility.py usr/lib/python3.14/dist-packages/libtbx/introspection.py usr/lib/python3.14/dist-packages/libtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/libtbx/load_env.py usr/lib/python3.14/dist-packages/libtbx/log.py usr/lib/python3.14/dist-packages/libtbx/math_utils.py usr/lib/python3.14/dist-packages/libtbx/metric_prefixes.py usr/lib/python3.14/dist-packages/libtbx/mpi4py.py usr/lib/python3.14/dist-packages/libtbx/object_oriented_patterns.py usr/lib/python3.14/dist-packages/libtbx/objgraph.py usr/lib/python3.14/dist-packages/libtbx/option_parser.py usr/lib/python3.14/dist-packages/libtbx/path.py usr/lib/python3.14/dist-packages/libtbx/pkg_utils.py usr/lib/python3.14/dist-packages/libtbx/program_template.py usr/lib/python3.14/dist-packages/libtbx/progress.py usr/lib/python3.14/dist-packages/libtbx/pyframe.py usr/lib/python3.14/dist-packages/libtbx/pyplot.py usr/lib/python3.14/dist-packages/libtbx/python_code_parsing.py usr/lib/python3.14/dist-packages/libtbx/resource_monitor.py usr/lib/python3.14/dist-packages/libtbx/run_tests.py usr/lib/python3.14/dist-packages/libtbx/runtime_utils.py usr/lib/python3.14/dist-packages/libtbx/simplexml.py usr/lib/python3.14/dist-packages/libtbx/smart_open.py usr/lib/python3.14/dist-packages/libtbx/start_print_trace.py usr/lib/python3.14/dist-packages/libtbx/str_utils.py usr/lib/python3.14/dist-packages/libtbx/subprocess_with_fixes.py usr/lib/python3.14/dist-packages/libtbx/table_utils.py usr/lib/python3.14/dist-packages/libtbx/thread_utils.py usr/lib/python3.14/dist-packages/libtbx/topological_sort.py usr/lib/python3.14/dist-packages/libtbx/try_hello_world_c.py usr/lib/python3.14/dist-packages/libtbx/tst_add_docstrings_with_ai.py usr/lib/python3.14/dist-packages/libtbx/tst_binary_search.py usr/lib/python3.14/dist-packages/libtbx/tst_citation_encoding.py usr/lib/python3.14/dist-packages/libtbx/tst_citations.py usr/lib/python3.14/dist-packages/libtbx/tst_conda_dispatcher.py usr/lib/python3.14/dist-packages/libtbx/tst_containers.py usr/lib/python3.14/dist-packages/libtbx/tst_dlite.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp_multicore.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp_state.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_pickle.py usr/lib/python3.14/dist-packages/libtbx/tst_find_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/tst_fully_buffered_timeout.py usr/lib/python3.14/dist-packages/libtbx/tst_mahalanobis.py usr/lib/python3.14/dist-packages/libtbx/tst_math_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_object_oriented_patterns.py usr/lib/python3.14/dist-packages/libtbx/tst_path.py usr/lib/python3.14/dist-packages/libtbx/tst_program_template.py usr/lib/python3.14/dist-packages/libtbx/tst_python_code_parsing.py usr/lib/python3.14/dist-packages/libtbx/tst_representation.py usr/lib/python3.14/dist-packages/libtbx/tst_run_tests_parallel_retry.py usr/lib/python3.14/dist-packages/libtbx/tst_run_tests_parallel_unique_dirs.py usr/lib/python3.14/dist-packages/libtbx/tst_runtime_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_scheduling.py usr/lib/python3.14/dist-packages/libtbx/tst_str_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_thread_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_topological_sort.py usr/lib/python3.14/dist-packages/libtbx/tst_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_version.py usr/lib/python3.14/dist-packages/libtbx/tst_word_index_generator.py usr/lib/python3.14/dist-packages/libtbx/tst_xmlrpc_utils.py usr/lib/python3.14/dist-packages/libtbx/utils.py usr/lib/python3.14/dist-packages/libtbx/version.py usr/lib/python3.14/dist-packages/libtbx/wingide.py usr/lib/python3.14/dist-packages/libtbx/word_index_generator.py usr/lib/python3.14/dist-packages/libtbx/xmlrpc_server_example.py usr/lib/python3.14/dist-packages/libtbx/xmlrpc_utils.py usr/lib/python3.14/dist-packages/libtbx/auto_build/ usr/lib/python3.14/dist-packages/libtbx/auto_build/__init__.py usr/lib/python3.14/dist-packages/libtbx/auto_build/bootstrap.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_mac_app.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_mac_pkg.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_windows_exe.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_windows_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_base_packages.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_conda.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_distribution.py usr/lib/python3.14/dist-packages/libtbx/auto_build/installer_utils.py usr/lib/python3.14/dist-packages/libtbx/auto_build/make_bundle.py usr/lib/python3.14/dist-packages/libtbx/auto_build/package_defs.py usr/lib/python3.14/dist-packages/libtbx/auto_build/plus_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/regenerate_module_files.py usr/lib/python3.14/dist-packages/libtbx/auto_build/rpath.py usr/lib/python3.14/dist-packages/libtbx/auto_build/setup_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py usr/lib/python3.14/dist-packages/libtbx/bundle/ usr/lib/python3.14/dist-packages/libtbx/bundle/__init__.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_all.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_build_libtbx.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_runtime_sources.py usr/lib/python3.14/dist-packages/libtbx/bundle/install_bat.py usr/lib/python3.14/dist-packages/libtbx/bundle/install_csh.py usr/lib/python3.14/dist-packages/libtbx/bundle/utils.py usr/lib/python3.14/dist-packages/libtbx/command_line/ usr/lib/python3.14/dist-packages/libtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/libtbx/command_line/add_docstrings_with_ai.py usr/lib/python3.14/dist-packages/libtbx/command_line/analyse_code_comments.py usr/lib/python3.14/dist-packages/libtbx/command_line/any2unix.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_line_count.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_not_show_diff.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin_ends_with.py usr/lib/python3.14/dist-packages/libtbx/command_line/bootstrap.py usr/lib/python3.14/dist-packages/libtbx/command_line/bundle_as_exe.py usr/lib/python3.14/dist-packages/libtbx/command_line/cctbx_chunk.py usr/lib/python3.14/dist-packages/libtbx/command_line/check_libcpp.py usr/lib/python3.14/dist-packages/libtbx/command_line/clean_clutter.py usr/lib/python3.14/dist-packages/libtbx/command_line/clear_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_install_script_bat.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_installer.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_mac_app.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_selfx.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_unzipsfx.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_windows_exe.py usr/lib/python3.14/dist-packages/libtbx/command_line/dtrace.py usr/lib/python3.14/dist-packages/libtbx/command_line/easy_qsub.py usr/lib/python3.14/dist-packages/libtbx/command_line/env_run.py usr/lib/python3.14/dist-packages/libtbx/command_line/epydoc_run.py usr/lib/python3.14/dist-packages/libtbx/command_line/extract_code_from_txt.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_clutter.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_files.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_in_repositories.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_old_style_classes.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_pdb_mmcif_problems.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_reserved_names.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_under_build.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_untested.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_unused_imports_crude.py usr/lib/python3.14/dist-packages/libtbx/command_line/git_avoid_merges.py usr/lib/python3.14/dist-packages/libtbx/command_line/help.py usr/lib/python3.14/dist-packages/libtbx/command_line/import_all_ext.py usr/lib/python3.14/dist-packages/libtbx/command_line/import_all_python.py usr/lib/python3.14/dist-packages/libtbx/command_line/install.py usr/lib/python3.14/dist-packages/libtbx/command_line/install_conda.py usr/lib/python3.14/dist-packages/libtbx/command_line/ipython_shell_start.py usr/lib/python3.14/dist-packages/libtbx/command_line/line_count.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_files.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_modules.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py usr/lib/python3.14/dist-packages/libtbx/command_line/make_dist.py usr/lib/python3.14/dist-packages/libtbx/command_line/make_sphinx_html.py usr/lib/python3.14/dist-packages/libtbx/command_line/nequal.py usr/lib/python3.14/dist-packages/libtbx/command_line/parallel_simple.py usr/lib/python3.14/dist-packages/libtbx/command_line/path_utility.py usr/lib/python3.14/dist-packages/libtbx/command_line/phil.py usr/lib/python3.14/dist-packages/libtbx/command_line/prime_factors_of.py usr/lib/python3.14/dist-packages/libtbx/command_line/printenv.py usr/lib/python3.14/dist-packages/libtbx/command_line/py_compile_all.py usr/lib/python3.14/dist-packages/libtbx/command_line/raise_exception_for_testing.py usr/lib/python3.14/dist-packages/libtbx/command_line/reindent.py usr/lib/python3.14/dist-packages/libtbx/command_line/remote_processing.py usr/lib/python3.14/dist-packages/libtbx/command_line/remove_tree.py usr/lib/python3.14/dist-packages/libtbx/command_line/remove_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/command_line/resource_monitor_plot.py usr/lib/python3.14/dist-packages/libtbx/command_line/run_pickled_function.py usr/lib/python3.14/dist-packages/libtbx/command_line/run_tests_parallel.py usr/lib/python3.14/dist-packages/libtbx/command_line/scons.py usr/lib/python3.14/dist-packages/libtbx/command_line/seconds_since_the_epoch.py usr/lib/python3.14/dist-packages/libtbx/command_line/sge_available_slots.py usr/lib/python3.14/dist-packages/libtbx/command_line/sge_qstat_counts.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_all_on_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_bin_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_build_options.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_build_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_but_no_repr.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_commands.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_date_and_time.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_dist_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_env.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_environ_usage.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_full_command_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_host_and_user.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_include_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_lib_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_module_dependencies.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_number_of_processors.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_numeric_version.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_numpy_version.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_python_dependencies.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_python_sys_executable.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_pythonpath.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_repository_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_tests.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_variable_names.py usr/lib/python3.14/dist-packages/libtbx/command_line/sphinx_build.py usr/lib/python3.14/dist-packages/libtbx/command_line/start_binary_bundle.py usr/lib/python3.14/dist-packages/libtbx/command_line/start_process.py usr/lib/python3.14/dist-packages/libtbx/command_line/wait_for_file.py usr/lib/python3.14/dist-packages/libtbx/development/ usr/lib/python3.14/dist-packages/libtbx/development/__init__.py usr/lib/python3.14/dist-packages/libtbx/development/except_Exception.py usr/lib/python3.14/dist-packages/libtbx/development/timers.py usr/lib/python3.14/dist-packages/libtbx/development/xcode_build_phase.py usr/lib/python3.14/dist-packages/libtbx/langchain/ usr/lib/python3.14/dist-packages/libtbx/langchain/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/phenix_knowledge.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_build_db.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_inspect_db.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_query_docs.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/ usr/lib/python3.14/dist-packages/libtbx/langchain/agent/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/advice_preprocessor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/api_client.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/best_files_tracker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/command_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/command_postprocessor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/config_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/contract.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/directive_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/directive_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/display_data_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/docs_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/dry_run_manager.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/error_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/error_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/event_formatter.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/event_log.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/failure_diagnoser.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/file_metadata.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/file_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/format_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/gate_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/generate_logic_doc.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/generate_safety_docs.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph_nodes.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/hypothesis_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/intent_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/kb_tags.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/log_section_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/metric_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/metrics_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/mtz_inspector.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/nl_to_phil.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/pattern_manager.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/perceive_checks.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/phenix_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/phil_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/placement_checker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/plan_generator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/planner.py 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usr/lib/python3.14/dist-packages/libtbx/langchain/agent/tst_agent_enhancements.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/validation_history.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/validation_inspector.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/workflow_engine.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/workflow_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/yaml_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/ usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/agent_session_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/log_info.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/state_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/summarizer.py usr/lib/python3.14/dist-packages/libtbx/langchain/commands/ usr/lib/python3.14/dist-packages/libtbx/langchain/commands/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/commands/base.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/ usr/lib/python3.14/dist-packages/libtbx/langchain/core/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/_build_info.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/_version.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/llm.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/types.py usr/lib/python3.14/dist-packages/libtbx/langchain/examples/ usr/lib/python3.14/dist-packages/libtbx/langchain/examples/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/ usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/api_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/explanation_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/html_report_template.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/kb_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/metric_patterns.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/phenix_programs.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/plan_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/plan_template_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/program_registration.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/prompts_hybrid.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/summary_display.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/thinking_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/yaml_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/ usr/lib/python3.14/dist-packages/libtbx/langchain/rag/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/_chroma_resilience.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/document_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/retriever.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/vector_store.py usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/ usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/base.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/analyze_tutorial_runs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/audit_phase_rename.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/canary_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/run_all_tests.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/test_api_keys.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_abort_message_all_stops.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_action_item_1.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_advice_preprocessing.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_after_program_fill_from_raw.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_after_program_prompt.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_agent_build_info.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_api_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_audit_fixes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_autobuild_hl_recovery.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_autobuild_sequence_waiver.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_autosol_bugs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_backward_compat.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_best_files_tracker.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_canary.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_cc_key_extraction.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_classify_mtz_type_001.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_command_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_contract_compliance.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_copies_tracking.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py 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usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_layer_diagnostics.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_validator_typo_hints.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directives_integration.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_display_data_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_dock_and_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_docs_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_dry_run.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_error_analyzer.py 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usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_silent_stop_abort_messages.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_simple_extractor_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_skip_promotion.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_skip_to_program.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_solve_action_keywords.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_space_group_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_spurious_stop_after_requested.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_standalone_consistency.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_state_serialization.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_step1f_single_emit.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_condition_false_positive.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_condition_fix.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_reason_codes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_reason_prompt.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_strategy_memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_structure_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_summary_display.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_supported_providers_single_source.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_template.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_thinking_agent.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_thinking_defense.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_transport.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_user_advice_filter.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_v112_13_fixes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_v120_providers.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validate_file_overrides.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validate_step_after_program_guard.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validation_history.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_workflow_complete_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_workflow_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_yaml_config.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_yaml_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/integration/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/integration/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/canary_check.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/framework.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/run_llm_tests.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_c1_raw_authority.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_directive_extraction.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_framework_self.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_planning.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/ usr/lib/python3.14/dist-packages/libtbx/langchain/utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/query.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/run_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/text_processing.py usr/lib/python3.14/dist-packages/libtbx/phil/ usr/lib/python3.14/dist-packages/libtbx/phil/__init__.py usr/lib/python3.14/dist-packages/libtbx/phil/command_line.py usr/lib/python3.14/dist-packages/libtbx/phil/experimental.py usr/lib/python3.14/dist-packages/libtbx/phil/gui_objects.py usr/lib/python3.14/dist-packages/libtbx/phil/interface.py usr/lib/python3.14/dist-packages/libtbx/phil/parser.py usr/lib/python3.14/dist-packages/libtbx/phil/tokenizer.py usr/lib/python3.14/dist-packages/libtbx/phil/tst.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_experimental.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_interface.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_tokenizer.py usr/lib/python3.14/dist-packages/libtbx/program_utils/ usr/lib/python3.14/dist-packages/libtbx/program_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/program_utils/result.py usr/lib/python3.14/dist-packages/libtbx/program_utils/statistics_info.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/ usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/communication.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/generic.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/looping.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/lsf.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/pbs_utils.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/remote.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/scheduling.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/scheduling_helpers.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/sge_utils.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/tst.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/ usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/__init__.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/errors.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/polling.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/status.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/submission.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/transfer.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/util.py usr/lib/python3.14/dist-packages/libtbx/scheduling/ usr/lib/python3.14/dist-packages/libtbx/scheduling/__init__.py usr/lib/python3.14/dist-packages/libtbx/scheduling/cluster_handler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/file_queue.py usr/lib/python3.14/dist-packages/libtbx/scheduling/job_scheduler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/mainthread.py usr/lib/python3.14/dist-packages/libtbx/scheduling/mp_handler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/parallel_for.py usr/lib/python3.14/dist-packages/libtbx/scheduling/philgen.py usr/lib/python3.14/dist-packages/libtbx/scheduling/process_pool.py usr/lib/python3.14/dist-packages/libtbx/scheduling/result.py usr/lib/python3.14/dist-packages/libtbx/scheduling/shared_resource.py usr/lib/python3.14/dist-packages/libtbx/scheduling/socket_queue.py usr/lib/python3.14/dist-packages/libtbx/scheduling/stacktrace.py usr/lib/python3.14/dist-packages/libtbx/scheduling/thread_handler.py usr/lib/python3.14/dist-packages/libtbx/server/ usr/lib/python3.14/dist-packages/libtbx/server/FileClient.py usr/lib/python3.14/dist-packages/libtbx/server/FileServer.py usr/lib/python3.14/dist-packages/libtbx/server/FileSocket.py usr/lib/python3.14/dist-packages/libtbx/server/SocketServer.py usr/lib/python3.14/dist-packages/libtbx/server/StartServer.py usr/lib/python3.14/dist-packages/libtbx/server/__init__.py usr/lib/python3.14/dist-packages/libtbx/sphinx/ usr/lib/python3.14/dist-packages/libtbx/sphinx/__init__.py usr/lib/python3.14/dist-packages/libtbx/sphinx/phil.py usr/lib/python3.14/dist-packages/libtbx/sphinx/pubmed.py usr/lib/python3.14/dist-packages/libtbx/sphinx/python_string.py usr/lib/python3.14/dist-packages/libtbx/test_utils/ usr/lib/python3.14/dist-packages/libtbx/test_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/test_utils/parallel.py usr/lib/python3.14/dist-packages/mmtbx/ usr/lib/python3.14/dist-packages/mmtbx/__init__.py usr/lib/python3.14/dist-packages/mmtbx/arrays.py usr/lib/python3.14/dist-packages/mmtbx/clashes.py usr/lib/python3.14/dist-packages/mmtbx/domains_from_pae.py usr/lib/python3.14/dist-packages/mmtbx/f_model_info.py usr/lib/python3.14/dist-packages/mmtbx/find_peaks.py usr/lib/python3.14/dist-packages/mmtbx/grow_density.py usr/lib/python3.14/dist-packages/mmtbx/invariant_domain.py usr/lib/python3.14/dist-packages/mmtbx/lattice.py usr/lib/python3.14/dist-packages/mmtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/mmtbx/map_tools.py usr/lib/python3.14/dist-packages/mmtbx/model_vs_data.py usr/lib/python3.14/dist-packages/mmtbx/msa.py usr/lib/python3.14/dist-packages/mmtbx/pdb_distances.py usr/lib/python3.14/dist-packages/mmtbx/pdb_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/proq2.py usr/lib/python3.14/dist-packages/mmtbx/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/resolve_resources.py usr/lib/python3.14/dist-packages/mmtbx/restraints.py usr/lib/python3.14/dist-packages/mmtbx/run_tests.py usr/lib/python3.14/dist-packages/mmtbx/superpose.py usr/lib/python3.14/dist-packages/mmtbx/xmanip.py usr/lib/python3.14/dist-packages/mmtbx/xmanip_tasks.py usr/lib/python3.14/dist-packages/mmtbx/alignment/ usr/lib/python3.14/dist-packages/mmtbx/alignment/__init__.py usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/ usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/__init__.py usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/tst.py usr/lib/python3.14/dist-packages/mmtbx/building/ usr/lib/python3.14/dist-packages/mmtbx/building/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/building/extend_sidechains.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_idealization.py usr/lib/python3.14/dist-packages/mmtbx/building/merge_models.py usr/lib/python3.14/dist-packages/mmtbx/building/minimize_chain.py usr/lib/python3.14/dist-packages/mmtbx/building/tst_extend_sidechains.py usr/lib/python3.14/dist-packages/mmtbx/building/tst_extend_sidechains_2.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/ usr/lib/python3.14/dist-packages/mmtbx/building/ligands/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/lifi.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/tst_00.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/ usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/berkeley_ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/ccd.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/starting_conformations.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/utils.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/ usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/__init__.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/example.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/example2.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/mosaic.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/scaler.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_scaler.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/ usr/lib/python3.14/dist-packages/mmtbx/chemical_components/__init__.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/cif_parser.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/tst.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ usr/lib/python3.14/dist-packages/mmtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/mmtbx/command_line/altloc_remediate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/angle.py usr/lib/python3.14/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py usr/lib/python3.14/dist-packages/mmtbx/command_line/arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/command_line/atom_valence_simple.py usr/lib/python3.14/dist-packages/mmtbx/command_line/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cablam.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cc_star.py usr/lib/python3.14/dist-packages/mmtbx/command_line/chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cif_as_mtz.py usr/lib/python3.14/dist-packages/mmtbx/command_line/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/command_line/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/comparama.py usr/lib/python3.14/dist-packages/mmtbx/command_line/debug_riding.py usr/lib/python3.14/dist-packages/mmtbx/command_line/density_modification.py usr/lib/python3.14/dist-packages/mmtbx/command_line/development_aev.py usr/lib/python3.14/dist-packages/mmtbx/command_line/development_fem.py usr/lib/python3.14/dist-packages/mmtbx/command_line/distance_difference.py usr/lib/python3.14/dist-packages/mmtbx/command_line/dynamics.py usr/lib/python3.14/dist-packages/mmtbx/command_line/electrons.py usr/lib/python3.14/dist-packages/mmtbx/command_line/emringer.py usr/lib/python3.14/dist-packages/mmtbx/command_line/emringer_score.py usr/lib/python3.14/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py usr/lib/python3.14/dist-packages/mmtbx/command_line/f000.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fab_elbow_angle.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fake_f_obs.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fetch_pdb.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_peaks_holes.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_residue_in_pdb.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_tls_groups.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fmodel.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/grow_density.py usr/lib/python3.14/dist-packages/mmtbx/command_line/hbond.py usr/lib/python3.14/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py usr/lib/python3.14/dist-packages/mmtbx/command_line/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/hydrogenate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/kinemage.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ligand_restraints_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_box.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_comparison.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_to_model_histogram.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_to_structure_factors.py usr/lib/python3.14/dist-packages/mmtbx/command_line/maps.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mask.py usr/lib/python3.14/dist-packages/mmtbx/command_line/massage_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/matthews.py usr/lib/python3.14/dist-packages/mmtbx/command_line/maximum_entropy_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_model_distances.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/command_line/models_as_chains.py usr/lib/python3.14/dist-packages/mmtbx/command_line/molprobity.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mtz2map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/next_gen_atom_typing.py usr/lib/python3.14/dist-packages/mmtbx/command_line/next_gen_residue_typing.py usr/lib/python3.14/dist-packages/mmtbx/command_line/nonbonded_overlaps.py usr/lib/python3.14/dist-packages/mmtbx/command_line/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdb_atom_selection.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/command_line/perigee.py usr/lib/python3.14/dist-packages/mmtbx/command_line/plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/command_line/polder.py usr/lib/python3.14/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py usr/lib/python3.14/dist-packages/mmtbx/command_line/probe2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/command_line/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/prune_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/command_line/r_factor_statistics.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rank_scale_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/real_space_diff_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reduce2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/command_line/remove_outliers.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rigid_bond_test.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ringer.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_puckers.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_suites.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/search_pdb_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/command_line/secondary_structure_restraints.py usr/lib/python3.14/dist-packages/mmtbx/command_line/secondary_structure_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py usr/lib/python3.14/dist-packages/mmtbx/command_line/sisa.py usr/lib/python3.14/dist-packages/mmtbx/command_line/sort_hetatms.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/suitename.py usr/lib/python3.14/dist-packages/mmtbx/command_line/suitename_old.py usr/lib/python3.14/dist-packages/mmtbx/command_line/super.py usr/lib/python3.14/dist-packages/mmtbx/command_line/superpose.py usr/lib/python3.14/dist-packages/mmtbx/command_line/taam_minus_iam.py usr/lib/python3.14/dist-packages/mmtbx/command_line/table_one.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls_analysis.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/command_line/undowser.py usr/lib/python3.14/dist-packages/mmtbx/command_line/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validate_H_cl_app.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validation_summary.py usr/lib/python3.14/dist-packages/mmtbx/command_line/verify_mon_lib_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/water_b_factors.py usr/lib/python3.14/dist-packages/mmtbx/command_line/where_is_that_cif_file.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xmanip.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xtriage.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/ usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/__init__.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/enol_peptide_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/histidines.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/mcl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/omega.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/omega_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/rotamers.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_enol_peptide.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/utils.py usr/lib/python3.14/dist-packages/mmtbx/den/ usr/lib/python3.14/dist-packages/mmtbx/den/__init__.py usr/lib/python3.14/dist-packages/mmtbx/den/plot_weights.py usr/lib/python3.14/dist-packages/mmtbx/den/refinement.py usr/lib/python3.14/dist-packages/mmtbx/density_modification/ usr/lib/python3.14/dist-packages/mmtbx/density_modification/__init__.py usr/lib/python3.14/dist-packages/mmtbx/density_modification/tst_density_modification.py usr/lib/python3.14/dist-packages/mmtbx/disorder/ usr/lib/python3.14/dist-packages/mmtbx/disorder/__init__.py usr/lib/python3.14/dist-packages/mmtbx/disorder/analyze_model.py usr/lib/python3.14/dist-packages/mmtbx/disorder/backbone.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst_analyze_model.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst_backbone.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/ usr/lib/python3.14/dist-packages/mmtbx/dynamics/__init__.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/cartesian_dynamics.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/constants.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/ensemble_cd.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/simulated_annealing.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/tst_sa.py usr/lib/python3.14/dist-packages/mmtbx/f_model/ usr/lib/python3.14/dist-packages/mmtbx/f_model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/f_model/f_model.py usr/lib/python3.14/dist-packages/mmtbx/f_model/f_model_info.py usr/lib/python3.14/dist-packages/mmtbx/geometry/ usr/lib/python3.14/dist-packages/mmtbx/geometry/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry/altloc.py usr/lib/python3.14/dist-packages/mmtbx/geometry/asa.py usr/lib/python3.14/dist-packages/mmtbx/geometry/clash.py usr/lib/python3.14/dist-packages/mmtbx/geometry/indexing.py usr/lib/python3.14/dist-packages/mmtbx/geometry/shared_types.py usr/lib/python3.14/dist-packages/mmtbx/geometry/sphere_surface_sampling.py usr/lib/python3.14/dist-packages/mmtbx/geometry/topology.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/ usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/afitt.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/c_beta.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/external.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/mopac_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/orca_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/qi_utils.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/qm_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/reference.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_replace_in_place.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_xtb_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/xtb_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/ usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/ usr/lib/python3.14/dist-packages/mmtbx/hydrogens/__init__.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/build_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/connectivity.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/find.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/neutron_utils.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/parameterization.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/riding.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_10.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_11.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_6.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_7.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_8.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_9.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_time.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_connectivity.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_const_dihedral.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_manager.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_validate_H.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/validate_H.py usr/lib/python3.14/dist-packages/mmtbx/ias/ usr/lib/python3.14/dist-packages/mmtbx/ias/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ias/tst_ias.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/ usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/__init__.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/all_his.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/tst.py usr/lib/python3.14/dist-packages/mmtbx/ions/ usr/lib/python3.14/dist-packages/mmtbx/ions/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ions/build.py usr/lib/python3.14/dist-packages/mmtbx/ions/environment.py usr/lib/python3.14/dist-packages/mmtbx/ions/geometry.py usr/lib/python3.14/dist-packages/mmtbx/ions/halides.py usr/lib/python3.14/dist-packages/mmtbx/ions/identify.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_environment.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_geometries.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_parameters.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_approx_zn.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_ca.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_ca_svm.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_k.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_mg.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pickle.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_symmetry_axis.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_validate_ca.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_validate_mg.py usr/lib/python3.14/dist-packages/mmtbx/ions/utils.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/ usr/lib/python3.14/dist-packages/mmtbx/ions/svm/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/dump_sites.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/tst_classifier_01.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/tst_classifier_02.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/utils.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ usr/lib/python3.14/dist-packages/mmtbx/kinemage/__init__.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/nrubs.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ribbon_rendering.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/tst_validation.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/validation.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ usr/lib/python3.14/dist-packages/mmtbx/ligands/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ligands/chemistry.py usr/lib/python3.14/dist-packages/mmtbx/ligands/electrons.py usr/lib/python3.14/dist-packages/mmtbx/ligands/hierarchy_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/rdkit_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ready_set_basics.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ready_set_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_electron_scripting.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_ready_set_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_xtal_screens.py usr/lib/python3.14/dist-packages/mmtbx/ligands/xtal_screens.py usr/lib/python3.14/dist-packages/mmtbx/maps/ usr/lib/python3.14/dist-packages/mmtbx/maps/__init__.py usr/lib/python3.14/dist-packages/mmtbx/maps/composite_omit_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/correlation.py usr/lib/python3.14/dist-packages/mmtbx/maps/fem.py usr/lib/python3.14/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/kick.py usr/lib/python3.14/dist-packages/mmtbx/maps/map_model_cc.py usr/lib/python3.14/dist-packages/mmtbx/maps/mtriage.py usr/lib/python3.14/dist-packages/mmtbx/maps/polder.py usr/lib/python3.14/dist-packages/mmtbx/maps/superpose.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_correlation.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py usr/lib/python3.14/dist-packages/mmtbx/maps/utils.py usr/lib/python3.14/dist-packages/mmtbx/maps/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/masks/ usr/lib/python3.14/dist-packages/mmtbx/masks/__init__.py usr/lib/python3.14/dist-packages/mmtbx/masks/tst_asu_mask.py usr/lib/python3.14/dist-packages/mmtbx/masks/tst_masks.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/ usr/lib/python3.14/dist-packages/mmtbx/max_lik/__init__.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/max_like_non_uniform.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/maxlik.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/tst_max_lik.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/tst_maxlik.py usr/lib/python3.14/dist-packages/mmtbx/model/ usr/lib/python3.14/dist-packages/mmtbx/model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/model/model.py usr/lib/python3.14/dist-packages/mmtbx/model/restraints.py usr/lib/python3.14/dist-packages/mmtbx/model/statistics.py usr/lib/python3.14/dist-packages/mmtbx/model/utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/ usr/lib/python3.14/dist-packages/mmtbx/monomer_library/__init__.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/bondlength_defaults.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/cif_types.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/conv_v2_v3.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/geostd_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/glyco_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/idealized_aa.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_mixins.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_setup.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/mmtbx_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/rotamer_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/server.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_chg.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_cif_types.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_linking.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_motif.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_paral_geo.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_4.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_5.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_selection.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_server.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_user_supplied_library.py usr/lib/python3.14/dist-packages/mmtbx/nci/ usr/lib/python3.14/dist-packages/mmtbx/nci/__init__.py usr/lib/python3.14/dist-packages/mmtbx/nci/data_filtering.py usr/lib/python3.14/dist-packages/mmtbx/nci/hbond.py usr/lib/python3.14/dist-packages/mmtbx/nci/skew_kurt_plot.py usr/lib/python3.14/dist-packages/mmtbx/nci/tst_hbond.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ usr/lib/python3.14/dist-packages/mmtbx/ncs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ncs/cartesian_restraints.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ligands.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_params.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_search.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_utils.py usr/lib/python3.14/dist-packages/mmtbx/ncs/tncs.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/ usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/__init__.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/pair_interaction.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_00.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_01.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_02.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_03.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_04.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_05.py usr/lib/python3.14/dist-packages/mmtbx/polygon/ usr/lib/python3.14/dist-packages/mmtbx/polygon/__init__.py usr/lib/python3.14/dist-packages/mmtbx/polygon/output.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst_gui.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst_polygon_data.py usr/lib/python3.14/dist-packages/mmtbx/probe/ usr/lib/python3.14/dist-packages/mmtbx/probe/AtomTypes.py usr/lib/python3.14/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py usr/lib/python3.14/dist-packages/mmtbx/probe/Helpers.py usr/lib/python3.14/dist-packages/mmtbx/probe/__init__.py usr/lib/python3.14/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py usr/lib/python3.14/dist-packages/mmtbx/programs/ usr/lib/python3.14/dist-packages/mmtbx/programs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/programs/arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/programs/atom_selection.py usr/lib/python3.14/dist-packages/mmtbx/programs/atom_valence_simple.py usr/lib/python3.14/dist-packages/mmtbx/programs/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/programs/cablam.py usr/lib/python3.14/dist-packages/mmtbx/programs/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/programs/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/programs/chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/programs/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/programs/comparama.py usr/lib/python3.14/dist-packages/mmtbx/programs/debug_riding.py usr/lib/python3.14/dist-packages/mmtbx/programs/elbow_services.py usr/lib/python3.14/dist-packages/mmtbx/programs/emringer.py usr/lib/python3.14/dist-packages/mmtbx/programs/fetch.py usr/lib/python3.14/dist-packages/mmtbx/programs/fmodel.py usr/lib/python3.14/dist-packages/mmtbx/programs/hbond.py usr/lib/python3.14/dist-packages/mmtbx/programs/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/hydrogenate.py usr/lib/python3.14/dist-packages/mmtbx/programs/ligand_restraints_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/mask.py usr/lib/python3.14/dist-packages/mmtbx/programs/matthews.py usr/lib/python3.14/dist-packages/mmtbx/programs/model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/programs/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/programs/next_gen_atom_typing.py usr/lib/python3.14/dist-packages/mmtbx/programs/next_gen_residue_typing.py usr/lib/python3.14/dist-packages/mmtbx/programs/nonbonded_overlaps.py usr/lib/python3.14/dist-packages/mmtbx/programs/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/pdb_as_cif.py usr/lib/python3.14/dist-packages/mmtbx/programs/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/programs/polder.py usr/lib/python3.14/dist-packages/mmtbx/programs/prepare_pdb_deposition.py usr/lib/python3.14/dist-packages/mmtbx/programs/probe2.py usr/lib/python3.14/dist-packages/mmtbx/programs/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/programs/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/programs/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/programs/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/programs/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/programs/reduce2.py usr/lib/python3.14/dist-packages/mmtbx/programs/reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/programs/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_puckers.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_suites.py usr/lib/python3.14/dist-packages/mmtbx/programs/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/programs/ss_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/suitename.py usr/lib/python3.14/dist-packages/mmtbx/programs/suitename_old.py usr/lib/python3.14/dist-packages/mmtbx/programs/taam_minus_iam.py usr/lib/python3.14/dist-packages/mmtbx/programs/undowser.py usr/lib/python3.14/dist-packages/mmtbx/programs/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/programs/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/programs/water_b_factors.py usr/lib/python3.14/dist-packages/mmtbx/programs/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/real_space/ usr/lib/python3.14/dist-packages/mmtbx/real_space/__init__.py usr/lib/python3.14/dist-packages/mmtbx/real_space/tst.py usr/lib/python3.14/dist-packages/mmtbx/reduce/ usr/lib/python3.14/dist-packages/mmtbx/reduce/InteractionGraph.py usr/lib/python3.14/dist-packages/mmtbx/reduce/Movers.py usr/lib/python3.14/dist-packages/mmtbx/reduce/Optimizers.py usr/lib/python3.14/dist-packages/mmtbx/reduce/__init__.py usr/lib/python3.14/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ usr/lib/python3.14/dist-packages/mmtbx/refinement/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/adp_refinement.py usr/lib/python3.14/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py usr/lib/python3.14/dist-packages/mmtbx/refinement/calculators.py usr/lib/python3.14/dist-packages/mmtbx/refinement/data.py usr/lib/python3.14/dist-packages/mmtbx/refinement/energy_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py usr/lib/python3.14/dist-packages/mmtbx/refinement/geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/refinement/group.py usr/lib/python3.14/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/refinement/occupancies.py usr/lib/python3.14/dist-packages/mmtbx/refinement/orca.py usr/lib/python3.14/dist-packages/mmtbx/refinement/print_statistics.py usr/lib/python3.14/dist-packages/mmtbx/refinement/refinement_flags.py usr/lib/python3.14/dist-packages/mmtbx/refinement/restraints.py usr/lib/python3.14/dist-packages/mmtbx/refinement/rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tardy.py usr/lib/python3.14/dist-packages/mmtbx/refinement/targets.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_fit_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_group.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_group_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_misc.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_occupancy_selections.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_real_space_simple.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_refinement_flags.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/refinement/utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/weights.py usr/lib/python3.14/dist-packages/mmtbx/refinement/weights_params.py usr/lib/python3.14/dist-packages/mmtbx/refinement/wrappers.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/ usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/adp.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_his.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_residue.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_residues.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_water.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/individual_sites.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/occupancy.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_weight.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/weight.py usr/lib/python3.14/dist-packages/mmtbx/regression/ usr/lib/python3.14/dist-packages/mmtbx/regression/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/make_fake_anomalous_data.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_add_h_to_water.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_adp_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_alignment.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_altloc_chain_break.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_altloc_remediate.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_angle.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cc_star.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_chain_comparison.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_chain_comparison_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_clashes.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_command_line_input.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_domains_from_pae.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_domains_from_pae_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_dynamics_cli.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_examples.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ss_structure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ss_structure_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_flipping_his.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_and_dm.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_fd.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ligand_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_loop_closure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_lrv.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_map_model_cc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_map_type_parser.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_maps_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_metal_link_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_minimize_chain.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ml_estimate.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_vs_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_models_to_from_chains.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_msa.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mtz2map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_multi_residue_class.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_origin_ids.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_3.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_4.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_box.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_ccs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_probe.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_process_predicted_model_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_prune_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rank_scale_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rdkit_utils_fragmentation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_custom_bond.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_switch.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_timeout.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_regularize_from_pdb_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ribbons.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rigid_bond_test.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ringer.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sampled_model_density.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_scattering_table.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_scattering_type_registry.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_schrodinger_interface.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sequence_validation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sort_hetatms.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_special_term_at_end.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ss_validation_long_chainids.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_statistics_output.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_superpose.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_table_one.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands_3.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validation_summary.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/ usr/lib/python3.14/dist-packages/mmtbx/regression/model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_merge.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_mtrix.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_pairs_within.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/ usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/ usr/lib/python3.14/dist-packages/mmtbx/regression/tls/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py usr/lib/python3.14/dist-packages/mmtbx/ringer/ usr/lib/python3.14/dist-packages/mmtbx/ringer/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_rolling.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_rscc.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_scoring.py usr/lib/python3.14/dist-packages/mmtbx/ringer/emringer.py usr/lib/python3.14/dist-packages/mmtbx/ringer/tst_em_rscc.py usr/lib/python3.14/dist-packages/mmtbx/ringer/tst_emringer.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ usr/lib/python3.14/dist-packages/mmtbx/rotamer/__init__.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/graphics.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/n_dim_table.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/nqh.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ramachandran_eval.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/rotamer_eval.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/sidechain_angles.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py usr/lib/python3.14/dist-packages/mmtbx/rsr/ usr/lib/python3.14/dist-packages/mmtbx/rsr/__init__.py usr/lib/python3.14/dist-packages/mmtbx/rsr/tst.py usr/lib/python3.14/dist-packages/mmtbx/scaling/ usr/lib/python3.14/dist-packages/mmtbx/scaling/__init__.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absence_likelihood.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absences.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absolute_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/basic_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/bayesian_estimator.py usr/lib/python3.14/dist-packages/mmtbx/scaling/data_statistics.py usr/lib/python3.14/dist-packages/mmtbx/scaling/fa_estimation.py usr/lib/python3.14/dist-packages/mmtbx/scaling/make_param.py usr/lib/python3.14/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py usr/lib/python3.14/dist-packages/mmtbx/scaling/matthews.py usr/lib/python3.14/dist-packages/mmtbx/scaling/mean_f_rms_f.py usr/lib/python3.14/dist-packages/mmtbx/scaling/outlier_plots.py usr/lib/python3.14/dist-packages/mmtbx/scaling/outlier_rejection.py usr/lib/python3.14/dist-packages/mmtbx/scaling/pair_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/scaling/pre_scale.py usr/lib/python3.14/dist-packages/mmtbx/scaling/random_omit.py usr/lib/python3.14/dist-packages/mmtbx/scaling/relative_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/relative_wilson.py usr/lib/python3.14/dist-packages/mmtbx/scaling/remove_outliers.py usr/lib/python3.14/dist-packages/mmtbx/scaling/sigmaa_estimation.py usr/lib/python3.14/dist-packages/mmtbx/scaling/ta_alpha_beta_calc.py usr/lib/python3.14/dist-packages/mmtbx/scaling/thorough_outlier_test.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_absences.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_bayesian_estimator.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_massage_data.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_mean_f_rms_f.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_outlier.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_sigmaa.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_xtriage.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_xtriage_twin_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/twin_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/twmad_scale.py usr/lib/python3.14/dist-packages/mmtbx/scaling/xtriage.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/ usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/__init__.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/find_ss_from_ca.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/nucleic_acids.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/proteins.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/regularize_from_pdb.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/secondary_structure_params.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/ss_validation.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst_insertion_codes.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst_segid.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/utils.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/ usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/__init__.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_1.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_2.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_3.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_io.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_ss_id_ncs.py usr/lib/python3.14/dist-packages/mmtbx/sisa/ usr/lib/python3.14/dist-packages/mmtbx/sisa/__init__.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/ usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/__init__.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_ga.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_input.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_masks.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_mtz.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_optimize.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_util.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ usr/lib/python3.14/dist-packages/mmtbx/solvent/__init__.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ensemble_ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/solvent/map_to_water.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/suitename/ usr/lib/python3.14/dist-packages/mmtbx/suitename/__init__.py usr/lib/python3.14/dist-packages/mmtbx/suitename/diangle.py usr/lib/python3.14/dist-packages/mmtbx/suitename/dualparse.py usr/lib/python3.14/dist-packages/mmtbx/suitename/mainchain.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitealyze.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitename.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitenamedefs.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suiteninit.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suiteninput.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitenout.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suites.py usr/lib/python3.14/dist-packages/mmtbx/suitename/transdent.py usr/lib/python3.14/dist-packages/mmtbx/tls/ usr/lib/python3.14/dist-packages/mmtbx/tls/__init__.py usr/lib/python3.14/dist-packages/mmtbx/tls/analysis.py usr/lib/python3.14/dist-packages/mmtbx/tls/command_line.py usr/lib/python3.14/dist-packages/mmtbx/tls/decompose.py usr/lib/python3.14/dist-packages/mmtbx/tls/ladp.py usr/lib/python3.14/dist-packages/mmtbx/tls/optimise_amplitudes.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm10.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm11.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm12.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm13.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm14.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm15.py usr/lib/python3.14/dist-packages/mmtbx/tls/tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/tls/tools.py usr/lib/python3.14/dist-packages/mmtbx/tls/utils.py usr/lib/python3.14/dist-packages/mmtbx/twinning/ usr/lib/python3.14/dist-packages/mmtbx/twinning/__init__.py usr/lib/python3.14/dist-packages/mmtbx/twinning/probabalistic_detwinning.py usr/lib/python3.14/dist-packages/mmtbx/twinning/twin_f_model.py usr/lib/python3.14/dist-packages/mmtbx/utils/ usr/lib/python3.14/dist-packages/mmtbx/utils/__init__.py usr/lib/python3.14/dist-packages/mmtbx/utils/fab_elbow_angle.py usr/lib/python3.14/dist-packages/mmtbx/utils/grid2d.py usr/lib/python3.14/dist-packages/mmtbx/utils/ntc.py usr/lib/python3.14/dist-packages/mmtbx/utils/rotatable_bonds.py usr/lib/python3.14/dist-packages/mmtbx/utils/tst_switch_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/validation/ usr/lib/python3.14/dist-packages/mmtbx/validation/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/analyze_peptides.py usr/lib/python3.14/dist-packages/mmtbx/validation/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/validation/cablam.py usr/lib/python3.14/dist-packages/mmtbx/validation/cbd_utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/validation/chain_comparison.py usr/lib/python3.14/dist-packages/mmtbx/validation/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/validation/comparama.py usr/lib/python3.14/dist-packages/mmtbx/validation/comprehensive_residue.py usr/lib/python3.14/dist-packages/mmtbx/validation/convert_lists.py usr/lib/python3.14/dist-packages/mmtbx/validation/datasets.py usr/lib/python3.14/dist-packages/mmtbx/validation/ensembles.py usr/lib/python3.14/dist-packages/mmtbx/validation/experimental.py usr/lib/python3.14/dist-packages/mmtbx/validation/fav_lists.py usr/lib/python3.14/dist-packages/mmtbx/validation/graphics.py usr/lib/python3.14/dist-packages/mmtbx/validation/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/validation/ligands.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_PRO_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_others_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/model_properties.py usr/lib/python3.14/dist-packages/mmtbx/validation/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/validation/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/phi_psi_2_data.py usr/lib/python3.14/dist-packages/mmtbx/validation/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/validation/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/sequence.py usr/lib/python3.14/dist-packages/mmtbx/validation/undowser.py usr/lib/python3.14/dist-packages/mmtbx/validation/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/validation/utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/validation/waters.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/ usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/kinemage_templates.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/percentile_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/percentile_mpscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/table_from_json.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/ usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/convert_from_text.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/ usr/lib/python3.14/dist-packages/mmtbx/validation/regression/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/run_restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cablam.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cablam_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cbetadev_02.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_clashscore_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_do_flips_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_experimental.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_find_region_max_value.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_keep_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_model_properties.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_1.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_3.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_4.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_5.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_arguments.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo_endtoend.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rama_z_01.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rama_z_02.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze_rare.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_suitename.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_symmetry_SS.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_undowser.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_undowser2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_waters.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/ usr/lib/python3.14/dist-packages/mmtbx/wwpdb/__init__.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/rcsb_entry_request.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/rcsb_web_services.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/tst_rcsb_entry_request.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/tst_rcsb_web_services.py usr/lib/python3.14/dist-packages/omptbx/ usr/lib/python3.14/dist-packages/omptbx/__init__.py usr/lib/python3.14/dist-packages/omptbx/tst.py usr/lib/python3.14/dist-packages/qttbx/ usr/lib/python3.14/dist-packages/qttbx/__init__.py usr/lib/python3.14/dist-packages/qttbx/phil.py usr/lib/python3.14/dist-packages/qttbx/qt.py usr/lib/python3.14/dist-packages/qttbx/run_tests.py usr/lib/python3.14/dist-packages/qttbx/examples/ usr/lib/python3.14/dist-packages/qttbx/examples/__init__.py usr/lib/python3.14/dist-packages/qttbx/examples/_helpers.py usr/lib/python3.14/dist-packages/qttbx/examples/data_manager_example.py usr/lib/python3.14/dist-packages/qttbx/examples/phil_widgets_example.py usr/lib/python3.14/dist-packages/qttbx/regression/ usr/lib/python3.14/dist-packages/qttbx/regression/__init__.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_agent_core.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_approval_coordinator.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_artifact_panel.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_auto_height.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_conversation_widgets.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_credentials_dialog.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_diagnostics.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_eliding.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_image.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_logging_setup.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_markdown.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_mcp_client.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_message_bubble.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_message_input.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_overlay_anchor.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_profile.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_question_card.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_runner.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_search.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_session.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_skills.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_storage.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_storage_session.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_subagent.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_subagent_view.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_tool_approval.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_tools.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_window_chrome.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_data_manager_widget.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_phil_widgets.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_run_tests_manifest.py usr/lib/python3.14/dist-packages/qttbx/viewers/ usr/lib/python3.14/dist-packages/qttbx/viewers/__init__.py usr/lib/python3.14/dist-packages/qttbx/viewers/chimerax.py usr/lib/python3.14/dist-packages/qttbx/widgets/ usr/lib/python3.14/dist-packages/qttbx/widgets/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/font_init.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/ usr/lib/python3.14/dist-packages/qttbx/widgets/chat/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/artifact.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/artifact_panel.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/auto_height.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/chat_top_bar.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/conversation_list.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/conversation_search.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/conversation_view.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/credentials_dialog.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/diagnostics.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/edge_rail.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/eliding.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/image_cache.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/image_lightbox.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/logging_setup.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/markdown_export.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/markdown_view.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/message_bubble.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/message_input.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/overlay_anchor.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/question_card.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/search_bar.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/tool_approval.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/tool_call_disclosure.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/ usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/approval.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/base.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/conversation.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/errors.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/events.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/mcp_client.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/paths.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/profile.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/runner.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/session.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/skills.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/storage.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/subagent.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/tools.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/ usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_binding_popup.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_delegate.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_phil_helpers.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_table_model.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/ usr/lib/python3.14/dist-packages/qttbx/widgets/phil/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/_colors.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/atom_selection.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/bool_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/choice_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/delegate.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/float_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/floats_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/int_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/ints_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/key_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/multiple.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/path_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/qstr_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/space_group.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/str_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/strings_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/text_base.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/unit_cell.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/words_widget.py usr/lib/python3.14/dist-packages/rstbx/ usr/lib/python3.14/dist-packages/rstbx/__init__.py usr/lib/python3.14/dist-packages/rstbx/run_tests.py usr/lib/python3.14/dist-packages/rstbx/utils.py usr/lib/python3.14/dist-packages/rstbx/apps/ usr/lib/python3.14/dist-packages/rstbx/apps/__init__.py usr/lib/python3.14/dist-packages/rstbx/apps/dual_resolution_helpers.py usr/lib/python3.14/dist-packages/rstbx/apps/slip_helpers.py usr/lib/python3.14/dist-packages/rstbx/apps/spot_markup.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/ usr/lib/python3.14/dist-packages/rstbx/apps/stills/__init__.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/dials_refinement_preceding_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/simple_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/stills_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/util.py usr/lib/python3.14/dist-packages/rstbx/array_family/ usr/lib/python3.14/dist-packages/rstbx/array_family/__init__.py usr/lib/python3.14/dist-packages/rstbx/array_family/flex.py usr/lib/python3.14/dist-packages/rstbx/bandpass/ usr/lib/python3.14/dist-packages/rstbx/bandpass/__init__.py usr/lib/python3.14/dist-packages/rstbx/bandpass/simulated_annealing.py usr/lib/python3.14/dist-packages/rstbx/bpcx/ usr/lib/python3.14/dist-packages/rstbx/bpcx/__init__.py usr/lib/python3.14/dist-packages/rstbx/bpcx/compare_mosflm_xds.py usr/lib/python3.14/dist-packages/rstbx/bpcx/ersatz_misset.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_positions.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_positions_idx.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_validate.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2a.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/ usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/__init__.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/detector.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/instrument_specifics.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/tst_detector_model.py usr/lib/python3.14/dist-packages/rstbx/cftbx/ usr/lib/python3.14/dist-packages/rstbx/cftbx/__init__.py usr/lib/python3.14/dist-packages/rstbx/cftbx/coordinate_frame_converter.py usr/lib/python3.14/dist-packages/rstbx/cftbx/coordinate_frame_helpers.py usr/lib/python3.14/dist-packages/rstbx/cftbx/tst_coordinate_frame_converter.py usr/lib/python3.14/dist-packages/rstbx/command_line/ usr/lib/python3.14/dist-packages/rstbx/command_line/__init__.py usr/lib/python3.14/dist-packages/rstbx/command_line/example_viewer.py usr/lib/python3.14/dist-packages/rstbx/command_line/index.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.create.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.explore_completeness.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.solver.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.wx_display.py usr/lib/python3.14/dist-packages/rstbx/command_line/slip_viewer.py usr/lib/python3.14/dist-packages/rstbx/command_line/viewer.py usr/lib/python3.14/dist-packages/rstbx/detectors/ usr/lib/python3.14/dist-packages/rstbx/detectors/__init__.py usr/lib/python3.14/dist-packages/rstbx/detectors/silicon.py usr/lib/python3.14/dist-packages/rstbx/dials_core/ usr/lib/python3.14/dist-packages/rstbx/dials_core/__init__.py usr/lib/python3.14/dist-packages/rstbx/dials_core/integration_core.py usr/lib/python3.14/dist-packages/rstbx/diffraction/ usr/lib/python3.14/dist-packages/rstbx/diffraction/__init__.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_ewald_sphere.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_partial_derivatives.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_predict.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/ usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/__init__.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/tst_utils_clustering.py usr/lib/python3.14/dist-packages/rstbx/dps_core/ usr/lib/python3.14/dist-packages/rstbx/dps_core/__init__.py usr/lib/python3.14/dist-packages/rstbx/dps_core/basis_choice.py usr/lib/python3.14/dist-packages/rstbx/dps_core/cell_assessment.py usr/lib/python3.14/dist-packages/rstbx/dps_core/constrainment.py usr/lib/python3.14/dist-packages/rstbx/dps_core/lepage.py usr/lib/python3.14/dist-packages/rstbx/dps_core/sampling.py usr/lib/python3.14/dist-packages/rstbx/dps_core/tst_iotbx_converter.py usr/lib/python3.14/dist-packages/rstbx/dps_core/zuoreduction.py usr/lib/python3.14/dist-packages/rstbx/indexing/ usr/lib/python3.14/dist-packages/rstbx/indexing/__init__.py usr/lib/python3.14/dist-packages/rstbx/indexing/do_index.py usr/lib/python3.14/dist-packages/rstbx/indexing/tst_auto_monoscan.py usr/lib/python3.14/dist-packages/rstbx/indexing/tst_dataset1.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/ usr/lib/python3.14/dist-packages/rstbx/indexing_api/__init__.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/basis_choice.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/force_cell.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/lattice.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/nearest_neighbor.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/outlier_detection.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/outlier_procedure.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/sampling.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/test_dps.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/tools.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/ usr/lib/python3.14/dist-packages/rstbx/new_horizons/__init__.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/index.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/oscillation_shots.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/pixel_spread.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/speckfinder.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/spot_shape.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/stats_index.py usr/lib/python3.14/dist-packages/rstbx/outlier_spots/ usr/lib/python3.14/dist-packages/rstbx/outlier_spots/__init__.py usr/lib/python3.14/dist-packages/rstbx/outlier_spots/fit_distribution.py usr/lib/python3.14/dist-packages/rstbx/phil/ usr/lib/python3.14/dist-packages/rstbx/phil/__init__.py usr/lib/python3.14/dist-packages/rstbx/phil/phil_preferences.py usr/lib/python3.14/dist-packages/rstbx/phil/preferences.py usr/lib/python3.14/dist-packages/rstbx/phil/scope.py usr/lib/python3.14/dist-packages/rstbx/simage/ usr/lib/python3.14/dist-packages/rstbx/simage/__init__.py usr/lib/python3.14/dist-packages/rstbx/simage/create.py usr/lib/python3.14/dist-packages/rstbx/simage/explore_completeness.py usr/lib/python3.14/dist-packages/rstbx/simage/integrate_crude.py usr/lib/python3.14/dist-packages/rstbx/simage/refine_uc_cr.py usr/lib/python3.14/dist-packages/rstbx/simage/run_labelit_index.py usr/lib/python3.14/dist-packages/rstbx/simage/run_spotfinder.py usr/lib/python3.14/dist-packages/rstbx/simage/solver.py usr/lib/python3.14/dist-packages/rstbx/simage/tst.py usr/lib/python3.14/dist-packages/rstbx/simage/wx_display.py usr/lib/python3.14/dist-packages/rstbx/simulation/ usr/lib/python3.14/dist-packages/rstbx/simulation/__init__.py usr/lib/python3.14/dist-packages/rstbx/simulation/constants.py usr/lib/python3.14/dist-packages/rstbx/simulation/sim_pdf.py usr/lib/python3.14/dist-packages/rstbx/simulation/sim_utils.py usr/lib/python3.14/dist-packages/rstbx/simulation/tst_xfel1_simple.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/ usr/lib/python3.14/dist-packages/rstbx/slip_viewer/__init__.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/calibration_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/example_frame_plugin_hidden.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/pyslip.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/ring_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/score_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/slip_display.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/slip_viewer_image_factory.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/tile_generation.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/uc_frame.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/ usr/lib/python3.14/dist-packages/rstbx/sublattice_support/__init__.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/change_basis.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/tst_sublattice.py usr/lib/python3.14/dist-packages/rstbx/symmetry/ usr/lib/python3.14/dist-packages/rstbx/symmetry/__init__.py usr/lib/python3.14/dist-packages/rstbx/symmetry/sgtbx_adaptor.py usr/lib/python3.14/dist-packages/rstbx/symmetry/subgroup.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/ usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/__init__.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/g_gradients.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/parameter_reduction.py usr/lib/python3.14/dist-packages/rstbx/viewer/ usr/lib/python3.14/dist-packages/rstbx/viewer/__init__.py usr/lib/python3.14/dist-packages/rstbx/viewer/calibration.py usr/lib/python3.14/dist-packages/rstbx/viewer/calibration_frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/controls.py usr/lib/python3.14/dist-packages/rstbx/viewer/dataset.py usr/lib/python3.14/dist-packages/rstbx/viewer/display.py usr/lib/python3.14/dist-packages/rstbx/viewer/drivers.py usr/lib/python3.14/dist-packages/rstbx/viewer/frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/indexing.py usr/lib/python3.14/dist-packages/rstbx/viewer/integration.py usr/lib/python3.14/dist-packages/rstbx/viewer/pixels3d.py usr/lib/python3.14/dist-packages/rstbx/viewer/processing.py usr/lib/python3.14/dist-packages/rstbx/viewer/results_base.py usr/lib/python3.14/dist-packages/rstbx/viewer/spotfinder_frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/spotfinder_wrap.py usr/lib/python3.14/dist-packages/rstbx/viewer/tst.py usr/lib/python3.14/dist-packages/scitbx/ usr/lib/python3.14/dist-packages/scitbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/cross_entropy.py usr/lib/python3.14/dist-packages/scitbx/cubicle_neighbors.py usr/lib/python3.14/dist-packages/scitbx/differential_evolution.py usr/lib/python3.14/dist-packages/scitbx/direct_search_simulated_annealing.py usr/lib/python3.14/dist-packages/scitbx/fftpack.py usr/lib/python3.14/dist-packages/scitbx/genetic_algorithm_with_mp.py usr/lib/python3.14/dist-packages/scitbx/golden_section_search.py usr/lib/python3.14/dist-packages/scitbx/lbfgsb.py usr/lib/python3.14/dist-packages/scitbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/scitbx/minimizers.py usr/lib/python3.14/dist-packages/scitbx/minpack.py usr/lib/python3.14/dist-packages/scitbx/r3_utils.py usr/lib/python3.14/dist-packages/scitbx/regular_grid_on_unit_sphere.py usr/lib/python3.14/dist-packages/scitbx/restraints.py usr/lib/python3.14/dist-packages/scitbx/run_tests.py usr/lib/python3.14/dist-packages/scitbx/simplex.py usr/lib/python3.14/dist-packages/scitbx/smoothing.py usr/lib/python3.14/dist-packages/scitbx/array_family/ usr/lib/python3.14/dist-packages/scitbx/array_family/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/flex.py usr/lib/python3.14/dist-packages/scitbx/array_family/shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/accessors/ usr/lib/python3.14/dist-packages/scitbx/array_family/accessors/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/ usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/regression_test.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_flex.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py usr/lib/python3.14/dist-packages/scitbx/array_family/detail/ usr/lib/python3.14/dist-packages/scitbx/array_family/detail/__init__.py usr/lib/python3.14/dist-packages/scitbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/command_line/ usr/lib/python3.14/dist-packages/scitbx/command_line/__init__.py usr/lib/python3.14/dist-packages/scitbx/command_line/apply_tapenade_hints.py usr/lib/python3.14/dist-packages/scitbx/command_line/generate_error_h.py usr/lib/python3.14/dist-packages/scitbx/command_line/histogram.py usr/lib/python3.14/dist-packages/scitbx/command_line/show_exp_times.py usr/lib/python3.14/dist-packages/scitbx/command_line/show_sizes.py usr/lib/python3.14/dist-packages/scitbx/command_line/unicode_examples.py usr/lib/python3.14/dist-packages/scitbx/dtmin/ usr/lib/python3.14/dist-packages/scitbx/dtmin/__init__.py usr/lib/python3.14/dist-packages/scitbx/dtmin/auxiliary.py usr/lib/python3.14/dist-packages/scitbx/dtmin/bounds.py usr/lib/python3.14/dist-packages/scitbx/dtmin/compulsory.py usr/lib/python3.14/dist-packages/scitbx/dtmin/min_logging.py usr/lib/python3.14/dist-packages/scitbx/dtmin/minimizer.py usr/lib/python3.14/dist-packages/scitbx/dtmin/optional.py usr/lib/python3.14/dist-packages/scitbx/dtmin/realsymmetricpseudoinverse.py usr/lib/python3.14/dist-packages/scitbx/dtmin/refinebase.py usr/lib/python3.14/dist-packages/scitbx/dtmin/reparams.py usr/lib/python3.14/dist-packages/scitbx/dtmin/twisted_gaussian.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/ usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/__init__.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py usr/lib/python3.14/dist-packages/scitbx/error/ usr/lib/python3.14/dist-packages/scitbx/error/__init__.py usr/lib/python3.14/dist-packages/scitbx/error/tst_error.py usr/lib/python3.14/dist-packages/scitbx/examples/ usr/lib/python3.14/dist-packages/scitbx/examples/__init__.py usr/lib/python3.14/dist-packages/scitbx/examples/bootstrap.py usr/lib/python3.14/dist-packages/scitbx/examples/chebyshev_lsq_example.py usr/lib/python3.14/dist-packages/scitbx/examples/flex_array_loops.py usr/lib/python3.14/dist-packages/scitbx/examples/flex_grid.py usr/lib/python3.14/dist-packages/scitbx/examples/functions.py usr/lib/python3.14/dist-packages/scitbx/examples/immoptibox_ports.py usr/lib/python3.14/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py usr/lib/python3.14/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py usr/lib/python3.14/dist-packages/scitbx/examples/lbfgs_recipe.py usr/lib/python3.14/dist-packages/scitbx/examples/minimizer_comparisons.py usr/lib/python3.14/dist-packages/scitbx/examples/principal_axes_of_inertia.py usr/lib/python3.14/dist-packages/scitbx/examples/rigid_body_refinement_core.py usr/lib/python3.14/dist-packages/scitbx/examples/bevington/ usr/lib/python3.14/dist-packages/scitbx/examples/bevington/__init__.py usr/lib/python3.14/dist-packages/scitbx/examples/bevington/silver.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/tst.py usr/lib/python3.14/dist-packages/scitbx/graph/ usr/lib/python3.14/dist-packages/scitbx/graph/__init__.py usr/lib/python3.14/dist-packages/scitbx/graph/rigidity.py usr/lib/python3.14/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py usr/lib/python3.14/dist-packages/scitbx/graph/tardy_tree.py usr/lib/python3.14/dist-packages/scitbx/graph/test_cases_tardy_pdb.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_rigidity.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_tardy_tree.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_utils.py usr/lib/python3.14/dist-packages/scitbx/graph/utils.py usr/lib/python3.14/dist-packages/scitbx/graphics_utils/ usr/lib/python3.14/dist-packages/scitbx/graphics_utils/__init__.py usr/lib/python3.14/dist-packages/scitbx/graphics_utils/tst.py usr/lib/python3.14/dist-packages/scitbx/iso_surface/ usr/lib/python3.14/dist-packages/scitbx/iso_surface/__init__.py usr/lib/python3.14/dist-packages/scitbx/iso_surface/tst_iso_surface.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/ usr/lib/python3.14/dist-packages/scitbx/lbfgs/__init__.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_curvatures.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_ext.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_mpi_split_evaluator.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/ usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/__init__.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/run.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/twisted_gaussian.py usr/lib/python3.14/dist-packages/scitbx/linalg/ usr/lib/python3.14/dist-packages/scitbx/linalg/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/eigensystem.py usr/lib/python3.14/dist-packages/scitbx/linalg/ext.py usr/lib/python3.14/dist-packages/scitbx/linalg/householder.py usr/lib/python3.14/dist-packages/scitbx/linalg/svd.py usr/lib/python3.14/dist-packages/scitbx/linalg/boost_python/ usr/lib/python3.14/dist-packages/scitbx/linalg/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/ usr/lib/python3.14/dist-packages/scitbx/linalg/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_cholesky.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_eigensystem.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_matrix.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_svd.py usr/lib/python3.14/dist-packages/scitbx/line_search/ usr/lib/python3.14/dist-packages/scitbx/line_search/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/ usr/lib/python3.14/dist-packages/scitbx/lstbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/normal_eqns.py usr/lib/python3.14/dist-packages/scitbx/lstbx/normal_eqns_solving.py usr/lib/python3.14/dist-packages/scitbx/lstbx/benchmarks/ usr/lib/python3.14/dist-packages/scitbx/lstbx/benchmarks/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/lstbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/ usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/test_problems.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py usr/lib/python3.14/dist-packages/scitbx/math/ usr/lib/python3.14/dist-packages/scitbx/math/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/besselk.py usr/lib/python3.14/dist-packages/scitbx/math/breakpoint.py usr/lib/python3.14/dist-packages/scitbx/math/chebyshev_lsq_fit.py usr/lib/python3.14/dist-packages/scitbx/math/clustering.py usr/lib/python3.14/dist-packages/scitbx/math/cubic_spline.py usr/lib/python3.14/dist-packages/scitbx/math/curve_fitting.py usr/lib/python3.14/dist-packages/scitbx/math/des_3_100_13.py usr/lib/python3.14/dist-packages/scitbx/math/des_3_240_21.py usr/lib/python3.14/dist-packages/scitbx/math/distributions.py usr/lib/python3.14/dist-packages/scitbx/math/euler_angles.py usr/lib/python3.14/dist-packages/scitbx/math/ext.py usr/lib/python3.14/dist-packages/scitbx/math/farey.py usr/lib/python3.14/dist-packages/scitbx/math/fit_peak.py usr/lib/python3.14/dist-packages/scitbx/math/fit_quadratic_function.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_400.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_900.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_900_ylm.py usr/lib/python3.14/dist-packages/scitbx/math/gaussian.py usr/lib/python3.14/dist-packages/scitbx/math/gaussian_fit.py usr/lib/python3.14/dist-packages/scitbx/math/gumbel.py usr/lib/python3.14/dist-packages/scitbx/math/incremental_SO3_sampling.py usr/lib/python3.14/dist-packages/scitbx/math/lefebvre.py usr/lib/python3.14/dist-packages/scitbx/math/minimum_covering_ellipsoid.py usr/lib/python3.14/dist-packages/scitbx/math/multiple_superposition.py usr/lib/python3.14/dist-packages/scitbx/math/periodogram.py usr/lib/python3.14/dist-packages/scitbx/math/scale_curves.py usr/lib/python3.14/dist-packages/scitbx/math/sieve_of_eratosthenes.py usr/lib/python3.14/dist-packages/scitbx/math/so3_lie_algebra.py usr/lib/python3.14/dist-packages/scitbx/math/spe.py usr/lib/python3.14/dist-packages/scitbx/math/sphere_sphere_intersection.py usr/lib/python3.14/dist-packages/scitbx/math/superpose.py usr/lib/python3.14/dist-packages/scitbx/math/tst_2d_zernike.py usr/lib/python3.14/dist-packages/scitbx/math/tst_bessel_zeros.py usr/lib/python3.14/dist-packages/scitbx/math/tst_multivariate_moments.py usr/lib/python3.14/dist-packages/scitbx/math/tst_so3_lie_algebra.py usr/lib/python3.14/dist-packages/scitbx/math/tst_undirected_graph.py usr/lib/python3.14/dist-packages/scitbx/math/tst_zernike.py usr/lib/python3.14/dist-packages/scitbx/math/tst_zernike_mom.py usr/lib/python3.14/dist-packages/scitbx/math/undirected_graph.py usr/lib/python3.14/dist-packages/scitbx/math/zernike_align_fft.py usr/lib/python3.14/dist-packages/scitbx/math/boost_python/ usr/lib/python3.14/dist-packages/scitbx/math/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/dev/ usr/lib/python3.14/dist-packages/scitbx/math/dev/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/erf/ usr/lib/python3.14/dist-packages/scitbx/math/erf/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/tests/ usr/lib/python3.14/dist-packages/scitbx/math/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_angle_derivative.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_bessel.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_clustering.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_cubic_equation.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_curve_fitting.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_dmatrix.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_euler_angles.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_exp_functions.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_fit_peak.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_g_function.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gaussian.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gcd.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_halton.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_line_search.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_math.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_periodogram.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_quadrature.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_r3_rotation.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_resample.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_similarity_indices.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_superpose.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_tetrahedron.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_weighted_correlation.py usr/lib/python3.14/dist-packages/scitbx/matrix/ usr/lib/python3.14/dist-packages/scitbx/matrix/__init__.py usr/lib/python3.14/dist-packages/scitbx/matrix/row_echelon.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/ usr/lib/python3.14/dist-packages/scitbx/matrix/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/tst_householder.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/tst_row_echelon.py usr/lib/python3.14/dist-packages/scitbx/misc/ usr/lib/python3.14/dist-packages/scitbx/misc/__init__.py usr/lib/python3.14/dist-packages/scitbx/python_utils/ usr/lib/python3.14/dist-packages/scitbx/python_utils/__init__.py usr/lib/python3.14/dist-packages/scitbx/python_utils/command_line.py usr/lib/python3.14/dist-packages/scitbx/python_utils/dicts.py usr/lib/python3.14/dist-packages/scitbx/python_utils/graph_tools.py usr/lib/python3.14/dist-packages/scitbx/python_utils/misc.py usr/lib/python3.14/dist-packages/scitbx/python_utils/random_transform.py usr/lib/python3.14/dist-packages/scitbx/python_utils/robust_statistics.py usr/lib/python3.14/dist-packages/scitbx/python_utils/signal_utils.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_graph.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_random_transform.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_robust.py usr/lib/python3.14/dist-packages/scitbx/random/ usr/lib/python3.14/dist-packages/scitbx/random/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/boost_python/ usr/lib/python3.14/dist-packages/scitbx/random/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/tests/ usr/lib/python3.14/dist-packages/scitbx/random/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/tests/tst_random.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/tst.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/body_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/make_bundles.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/spatial_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_basic.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/wx_tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/test_simulation.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/test_utils.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_molecules.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_singular.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/utils.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_free_motion.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_molecules.py usr/lib/python3.14/dist-packages/scitbx/serialization/ usr/lib/python3.14/dist-packages/scitbx/serialization/__init__.py usr/lib/python3.14/dist-packages/scitbx/slatec/ usr/lib/python3.14/dist-packages/scitbx/slatec/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/ usr/lib/python3.14/dist-packages/scitbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/scitbx/source_generators/lbfgs_fem.py usr/lib/python3.14/dist-packages/scitbx/source_generators/utils.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/ usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_algebras.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_all.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_apply.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_operator_functors.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_operator_traits_builtin.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_reductions.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_std_imports.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/operator_functor_info.py usr/lib/python3.14/dist-packages/scitbx/sparse/ usr/lib/python3.14/dist-packages/scitbx/sparse/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/boost_python/ usr/lib/python3.14/dist-packages/scitbx/sparse/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/ usr/lib/python3.14/dist-packages/scitbx/sparse/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/tst_sparse.py usr/lib/python3.14/dist-packages/scitbx/stdlib/ usr/lib/python3.14/dist-packages/scitbx/stdlib/__init__.py usr/lib/python3.14/dist-packages/scitbx/stl/ usr/lib/python3.14/dist-packages/scitbx/stl/__init__.py usr/lib/python3.14/dist-packages/scitbx/stl/map.py usr/lib/python3.14/dist-packages/scitbx/stl/set.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_map.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_set.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_vector.py usr/lib/python3.14/dist-packages/scitbx/stl/vector.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/single.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/boost_python/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/tst_single.py usr/lib/python3.14/dist-packages/scitbx/tests/ usr/lib/python3.14/dist-packages/scitbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/tests/differential_evolution.py usr/lib/python3.14/dist-packages/scitbx/tests/direct_search_simulated_annealing.py usr/lib/python3.14/dist-packages/scitbx/tests/golden_section_search.py usr/lib/python3.14/dist-packages/scitbx/tests/simplex.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_basic.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_cubicle_neighbors.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_minimizer_lbfgs_general.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_r3_utils.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_smoothing.py usr/lib/python3.14/dist-packages/scitbx/wigner/ usr/lib/python3.14/dist-packages/scitbx/wigner/__init__.py usr/lib/python3.14/dist-packages/scitbx/wigner/tst_wigner3j.py usr/lib/python3.14/dist-packages/serialtbx/ usr/lib/python3.14/dist-packages/serialtbx/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/ usr/lib/python3.14/dist-packages/serialtbx/detector/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/cspad.py usr/lib/python3.14/dist-packages/serialtbx/detector/jungfrau.py usr/lib/python3.14/dist-packages/serialtbx/detector/rayonix.py usr/lib/python3.14/dist-packages/serialtbx/detector/xtc.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/ usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/metrology.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/ usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/__init__.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/max_like.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/util.py usr/lib/python3.14/dist-packages/serialtbx/util/ usr/lib/python3.14/dist-packages/serialtbx/util/__init__.py usr/lib/python3.14/dist-packages/serialtbx/util/construct_frame.py usr/lib/python3.14/dist-packages/serialtbx/util/energy_scan_notch_finder.py usr/lib/python3.14/dist-packages/serialtbx/util/time.py usr/lib/python3.14/dist-packages/simtbx/ usr/lib/python3.14/dist-packages/simtbx/__init__.py usr/lib/python3.14/dist-packages/simtbx/run_tests.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/attr_list.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/device.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_io.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/mpi_logger.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/parameter_errors.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/phil.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/prep_stage2_input.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/psf.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/stage_two_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/base_refiner.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/geometry.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/parameters.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py usr/lib/python3.14/dist-packages/simtbx/gpu/ usr/lib/python3.14/dist-packages/simtbx/gpu/__init__.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_exafel_api.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_shoeboxes.py usr/lib/python3.14/dist-packages/simtbx/kokkos/ usr/lib/python3.14/dist-packages/simtbx/kokkos/__init__.py usr/lib/python3.14/dist-packages/simtbx/kokkos/tst_kokkos_lib.py usr/lib/python3.14/dist-packages/simtbx/modeling/ usr/lib/python3.14/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py usr/lib/python3.14/dist-packages/simtbx/modeling/__init__.py usr/lib/python3.14/dist-packages/simtbx/modeling/forward_models.py usr/lib/python3.14/dist-packages/simtbx/modeling/predictions.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/ usr/lib/python3.14/dist-packages/simtbx/nanoBragg/__init__.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_input.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/sim_data.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_multisource_background.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/utils.py usr/lib/python3.14/dist-packages/simtbx/pixel/ usr/lib/python3.14/dist-packages/simtbx/pixel/__init__.py usr/lib/python3.14/dist-packages/smtbx/ usr/lib/python3.14/dist-packages/smtbx/__init__.py usr/lib/python3.14/dist-packages/smtbx/development.py usr/lib/python3.14/dist-packages/smtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/smtbx/run_tests.py usr/lib/python3.14/dist-packages/smtbx/utils.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/ usr/lib/python3.14/dist-packages/smtbx/ab_initio/__init__.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/charge_flipping.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/ usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/__init__.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py usr/lib/python3.14/dist-packages/smtbx/absolute_structure/ usr/lib/python3.14/dist-packages/smtbx/absolute_structure/__init__.py usr/lib/python3.14/dist-packages/smtbx/array_family/ usr/lib/python3.14/dist-packages/smtbx/array_family/__init__.py usr/lib/python3.14/dist-packages/smtbx/command_line/ usr/lib/python3.14/dist-packages/smtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/smtbx/command_line/absolute_structure.py usr/lib/python3.14/dist-packages/smtbx/command_line/anom_refine.py usr/lib/python3.14/dist-packages/smtbx/command_line/benchmark_refinement.py usr/lib/python3.14/dist-packages/smtbx/command_line/masks.py usr/lib/python3.14/dist-packages/smtbx/command_line/refine.py usr/lib/python3.14/dist-packages/smtbx/masks/ usr/lib/python3.14/dist-packages/smtbx/masks/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/ usr/lib/python3.14/dist-packages/smtbx/refinement/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/least_squares.py usr/lib/python3.14/dist-packages/smtbx/refinement/weighting_schemes.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/adp.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/all.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/fpfdp.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/occupancy.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/rigid.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/site.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/all.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/ usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/adp_restraints.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py usr/lib/python3.14/dist-packages/smtbx/regression/ usr/lib/python3.14/dist-packages/smtbx/regression/__init__.py usr/lib/python3.14/dist-packages/smtbx/regression/tst_commandline_anomrefine.py usr/lib/python3.14/dist-packages/smtbx/regression/tst_commandline_refine.py usr/lib/python3.14/dist-packages/smtbx/regression/test_data/ usr/lib/python3.14/dist-packages/smtbx/regression/test_data/__init__.py usr/lib/python3.14/dist-packages/smtbx/source_generators/ usr/lib/python3.14/dist-packages/smtbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/smtbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/smtbx/stl/ usr/lib/python3.14/dist-packages/smtbx/stl/__init__.py usr/lib/python3.14/dist-packages/smtbx/stl/map.py usr/lib/python3.14/dist-packages/smtbx/structure_factors/ usr/lib/python3.14/dist-packages/smtbx/structure_factors/__init__.py usr/lib/python3.14/dist-packages/smtbx/structure_factors/direct/ usr/lib/python3.14/dist-packages/smtbx/structure_factors/direct/__init__.py usr/lib/python3.14/dist-packages/spotfinder/ usr/lib/python3.14/dist-packages/spotfinder/__init__.py usr/lib/python3.14/dist-packages/spotfinder/exception.py usr/lib/python3.14/dist-packages/spotfinder/run_tests.py usr/lib/python3.14/dist-packages/spotfinder/applications/ usr/lib/python3.14/dist-packages/spotfinder/applications/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/image_viewer.py usr/lib/python3.14/dist-packages/spotfinder/applications/practical_heuristics.py usr/lib/python3.14/dist-packages/spotfinder/applications/signal_strength.py usr/lib/python3.14/dist-packages/spotfinder/applications/stats_distl.py usr/lib/python3.14/dist-packages/spotfinder/applications/wrappers.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/ usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/cxi_phil.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/cxi_run3.py usr/lib/python3.14/dist-packages/spotfinder/array_family/ usr/lib/python3.14/dist-packages/spotfinder/array_family/__init__.py usr/lib/python3.14/dist-packages/spotfinder/array_family/flex.py usr/lib/python3.14/dist-packages/spotfinder/command_line/ usr/lib/python3.14/dist-packages/spotfinder/command_line/__init__.py usr/lib/python3.14/dist-packages/spotfinder/command_line/find_active_area.py usr/lib/python3.14/dist-packages/spotfinder/command_line/image_viewer.py usr/lib/python3.14/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/command_line/signal_strength.py usr/lib/python3.14/dist-packages/spotfinder/command_line/sweep_strength.py usr/lib/python3.14/dist-packages/spotfinder/command_line/thin_client.py usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/ usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/__init__.py usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/close_spots_detail.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/ usr/lib/python3.14/dist-packages/spotfinder/diffraction/__init__.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/geometry.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/imagefiles.py usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/ usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/__init__.py usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py usr/lib/python3.14/dist-packages/spotfinder/math_support/ usr/lib/python3.14/dist-packages/spotfinder/math_support/__init__.py usr/lib/python3.14/dist-packages/spotfinder/math_support/sphere_formulae.py usr/lib/python3.14/dist-packages/spotfinder/servers/ usr/lib/python3.14/dist-packages/spotfinder/servers/__init__.py usr/lib/python3.14/dist-packages/spotfinder/servers/adsc_client.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_bcsb.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_dials.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_utils.py usr/lib/python3.14/dist-packages/spotfinder/servers/bcsb_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/general_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py usr/lib/python3.14/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/servers/multipart_encoder.py usr/lib/python3.14/dist-packages/spotfinder/servers/pilatus_client.py usr/lib/python3.14/dist-packages/spotfinder/servers/specific_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/spotfinder_server_client_push.py usr/lib/python3.14/dist-packages/spotfinder/servers/spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/servers/thin_client.py usr/lib/python3.14/dist-packages/wxtbx/ usr/lib/python3.14/dist-packages/wxtbx/__init__.py usr/lib/python3.14/dist-packages/wxtbx/adp_statistics.py usr/lib/python3.14/dist-packages/wxtbx/anomalous_scattering.py usr/lib/python3.14/dist-packages/wxtbx/app.py usr/lib/python3.14/dist-packages/wxtbx/b_plot.py usr/lib/python3.14/dist-packages/wxtbx/bitmaps.py usr/lib/python3.14/dist-packages/wxtbx/browser.py usr/lib/python3.14/dist-packages/wxtbx/checklistctrl.py usr/lib/python3.14/dist-packages/wxtbx/custom_restraints.py usr/lib/python3.14/dist-packages/wxtbx/ensemble_validation.py usr/lib/python3.14/dist-packages/wxtbx/errors.py usr/lib/python3.14/dist-packages/wxtbx/heavy_atoms.py usr/lib/python3.14/dist-packages/wxtbx/icons.py usr/lib/python3.14/dist-packages/wxtbx/info_panels.py usr/lib/python3.14/dist-packages/wxtbx/layout.py usr/lib/python3.14/dist-packages/wxtbx/listeditor.py usr/lib/python3.14/dist-packages/wxtbx/metallicbutton.py usr/lib/python3.14/dist-packages/wxtbx/misc_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/monitor.py usr/lib/python3.14/dist-packages/wxtbx/mtz_dump.py usr/lib/python3.14/dist-packages/wxtbx/path_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/pdb_editor.py usr/lib/python3.14/dist-packages/wxtbx/polygon.py usr/lib/python3.14/dist-packages/wxtbx/polygon_db_viewer.py usr/lib/python3.14/dist-packages/wxtbx/process_control.py usr/lib/python3.14/dist-packages/wxtbx/qstat_view.py usr/lib/python3.14/dist-packages/wxtbx/run_tests.py usr/lib/python3.14/dist-packages/wxtbx/segmentedctrl.py usr/lib/python3.14/dist-packages/wxtbx/sequence_view.py usr/lib/python3.14/dist-packages/wxtbx/symmetry_dialog.py usr/lib/python3.14/dist-packages/wxtbx/tables.py usr/lib/python3.14/dist-packages/wxtbx/utils.py usr/lib/python3.14/dist-packages/wxtbx/windows.py usr/lib/python3.14/dist-packages/wxtbx/xtriage.py usr/lib/python3.14/dist-packages/wxtbx/command_line/ usr/lib/python3.14/dist-packages/wxtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py usr/lib/python3.14/dist-packages/wxtbx/command_line/b_plot.py usr/lib/python3.14/dist-packages/wxtbx/command_line/inspect_r_free_flags.py usr/lib/python3.14/dist-packages/wxtbx/command_line/loggraph.py usr/lib/python3.14/dist-packages/wxtbx/command_line/pdb_editor.py usr/lib/python3.14/dist-packages/wxtbx/command_line/pdb_statistics.py usr/lib/python3.14/dist-packages/wxtbx/command_line/plan_sad_experiment.py usr/lib/python3.14/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py usr/lib/python3.14/dist-packages/wxtbx/command_line/show_file_info.py usr/lib/python3.14/dist-packages/wxtbx/command_line/wxpython.py usr/lib/python3.14/dist-packages/wxtbx/command_line/xtriage.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/ usr/lib/python3.14/dist-packages/wxtbx/phil_controls/__init__.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/array_label.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/boolctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/choice.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/choice_multi.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/floatctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/floats.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/intctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/ints.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/misc_ctrls.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/numbers.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/path.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/simple_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/space_group.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/strctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/strings.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/symop.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/text_base.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/tree.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/tribool.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/unit_cell.py usr/lib/python3.14/dist-packages/wxtbx/plots/ usr/lib/python3.14/dist-packages/wxtbx/plots/__init__.py usr/lib/python3.14/dist-packages/wxtbx/plots/emringer.py usr/lib/python3.14/dist-packages/wxtbx/plots/molprobity.py usr/lib/python3.14/dist-packages/wxtbx/regression/ usr/lib/python3.14/dist-packages/wxtbx/regression/__init__.py usr/lib/python3.14/dist-packages/wxtbx/regression/_headless_construct_cases.py usr/lib/python3.14/dist-packages/wxtbx/regression/_warnings.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_headless_construct.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_imports.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_process_control.py usr/lib/python3.14/dist-packages/wxtbx/reports/ usr/lib/python3.14/dist-packages/wxtbx/reports/__init__.py usr/lib/python3.14/dist-packages/wxtbx/reports/blast.py usr/lib/python3.14/dist-packages/wxtbx/reports/pdb_symmetry.py usr/lib/python3.14/dist-packages/xcif/ usr/lib/python3.14/dist-packages/xcif/__init__.py usr/lib/python3.14/dist-packages/xcif/run_tests.py usr/lib/python3.14/dist-packages/xcif/benchmarks/ usr/lib/python3.14/dist-packages/xcif/benchmarks/__init__.py usr/lib/python3.14/dist-packages/xcif/benchmarks/run_benchmarks.py usr/lib/python3.14/dist-packages/xcif/regression/ usr/lib/python3.14/dist-packages/xcif/regression/__init__.py usr/lib/python3.14/dist-packages/xcif/regression/tst_api_compat.py usr/lib/python3.14/dist-packages/xcif/regression/tst_bindings.py usr/lib/python3.14/dist-packages/xcif/regression/tst_example_parse.py usr/lib/python3.14/dist-packages/xcif/regression/tst_example_tokenize.py usr/lib/python3.14/dist-packages/xcif/regression/tst_gil_release.py usr/lib/python3.14/dist-packages/xcif/regression/tst_iotbx_cif_reader_engine.py usr/lib/python3.14/dist-packages/xcif/regression/tst_iotbx_cif_reader_parity.py usr/lib/python3.14/dist-packages/xcif/regression/tst_memory.py usr/lib/python3.14/dist-packages/xcif/regression/tst_non_strict_mode.py usr/lib/python3.14/dist-packages/xcif/regression/tst_parse_verify.py usr/lib/python3.14/dist-packages/xcif/regression/tst_pdb_coordinates.py usr/lib/python3.14/dist-packages/xcif/regression/tst_pdb_sf.py usr/lib/python3.14/dist-packages/xcif/regression/tst_quoted_string_delimiter.py usr/lib/python3.14/dist-packages/xcif/regression/tst_roundtrip.py usr/lib/python3.14/dist-packages/xcif/regression/tst_semicolon_field_strict.py usr/lib/python3.14/dist-packages/xcif/regression/tst_string_interning.py usr/lib/python3.14/dist-packages/xcif/regression/tst_utf8.py sent 1,178,810,767 bytes received 77,288 bytes 471,555,222.00 bytes/sec total size is 1,178,232,923 speedup is 1.00 dh_auto_build -- --name cctbx -s custom --build-args="debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp --pyver={version} --srcdir=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif'" pybuild --build -i python{version} -p 3.14 --name cctbx -s custom --build-args="debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp --pyver={version} --srcdir=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif'" --parallel=8 I: pybuild base:385: debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp --pyver=3.14 --srcdir=/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 --builddir='/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif' debian/install-cctbx.sh: line 7: 0: command not found --destdir '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp' --pyver '3.14' --srcdir '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' --builddir '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_' --modules 'annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif' -- Installing CCTBX into a FHS system Modules: annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif From the source /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 and build /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_ To the FHS : destdir /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp pyver 3.14 bindir /usr/bin incdir /usr/include pkglibdir /usr/lib/cctbx/python3.14 libdir /usr/lib/powerpc64le-linux-gnu pythondir /usr/lib/python3.14/dist-packages with PYTHONPATH /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build Copying libtbx_env from /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/.pybuild/cpython3_3.14_cctbx/build_ to /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14 {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': 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relocatable="bin/xcif.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/boost.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/omptbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/cma_es.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/fable.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/scitbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/annlib.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/cbflib.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/ccp4io.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/cctbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/crys3d.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/iotbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/dxtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/gltbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/mmtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/spotfinder.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/rstbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/serialtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/xcif.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py")}, 'bin_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin"), 'boost_version': 109000, 'build_options': , 'build_path': absolute_path("/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="exe"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx', 'xcif'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="include"), 'installed': False, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="lib"), 'missing_for_build': set(), 'missing_for_use': set(), 'missing_optional': {'king', 'reduce', 'docutils', 'cbflib', 'probe'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': , 'xcif': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../annlib"), 'annlib_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../annlib_adaptbx"), 'boost': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../boost"), 'boost_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cctbx"), 'chiltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../chiltbx"), 'cma_es': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cma_es"), 'crys3d': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../crys3d"), 'dxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../dxtbx"), 'fable': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../fable"), 'gltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../gltbx"), 'iotbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../iotbx"), 'libtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx"), 'mmtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../mmtbx"), 'omptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../omptbx"), 'rstbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../rstbx"), 'scitbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../scitbx"), 'serialtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../serialtbx"), 'smtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx"), 'spotfinder': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../spotfinder"), 'tbxx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../tbxx"), 'ucif': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ucif"), 'wxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx"), 'xcif': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../xcif")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': False, 'path_utility': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), 'python_version_major_minor': (3, 14), 'pythonpath': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../.."), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../dxtbx/src"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../boost_adaptbx"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="lib"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/lib/python3.14/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/lib/python3/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/local/lib/python3.14/dist-packages")], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../..")], 'scons_dist_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr")} Saved /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1/debian/tmp/usr/lib/cctbx/python3.14/libtbx_env env {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': 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'python_version_major_minor': (3, 14), 'pythonpath': [], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages")], 'scons_dist_path': relocatable_path(anchor="/usr", relocatable=".")} building file list ... done ./ boost_adaptbx/ boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy iotbx/ iotbx/pdb/ iotbx/pdb/hybrid_36_fem scitbx/ scitbx/array_family/ scitbx/array_family/tst_accessors scitbx/array_family/tst_af_1 scitbx/array_family/tst_af_2 scitbx/array_family/tst_af_3 scitbx/array_family/tst_af_4 scitbx/array_family/tst_af_5 scitbx/array_family/tst_mat3 scitbx/array_family/tst_optional_copy scitbx/array_family/tst_rectangular_full_packed scitbx/array_family/tst_ref_matrix_facet scitbx/array_family/tst_sym_mat3 scitbx/array_family/tst_unsigned_float_arithmetic scitbx/array_family/tst_vec3 scitbx/error/ scitbx/error/tst_error scitbx/lbfgs/ scitbx/lbfgs/tst_lbfgs scitbx/math/ scitbx/math/tests/ scitbx/math/tests/tst scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky scitbx/matrix/tests/tst_givens scitbx/matrix/tests/tst_householder scitbx/matrix/tests/tst_svd scitbx/serialization/ scitbx/serialization/tst_base_256 smtbx/ smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_geometrical_hydrogens smtbx/refinement/constraints/tests/tst_reparametrisation smtbx/refinement/constraints/tests/tst_special_position sent 16,696,879 bytes received 568 bytes 33,394,894.00 bytes/sec total size is 16,685,024 speedup is 1.00 building file list ... done ./ libann_adaptor.so -> libann_adaptor.so.0.0.1 libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 libann_adaptor.so.0.0.1 libasymmetric_map.so -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0.0.1 libcbf-private.so -> libcbf-private.so.0.0.1 libcbf-private.so.0 -> libcbf-private.so.0.0.1 libcbf-private.so.0.0.1 libccp4io.so -> libccp4io.so.0.0.1 libccp4io.so.0 -> libccp4io.so.0.0.1 libccp4io.so.0.0.1 libcctbx.so -> libcctbx.so.0.0.1 libcctbx.so.0 -> libcctbx.so.0.0.1 libcctbx.so.0.0.1 libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0.0.1 libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0.0.1 libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0.0.1 libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0.0.1 libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0.0.1 libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0.0.1 libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0.0.1 libomptbx.so -> libomptbx.so.0.0.1 libomptbx.so.0 -> libomptbx.so.0.0.1 libomptbx.so.0.0.1 librstbx.so -> librstbx.so.0.0.1 librstbx.so.0 -> librstbx.so.0.0.1 librstbx.so.0.0.1 libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0.0.1 libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0.0.1 libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0.0.1 libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0.0.1 libspotfinder.so -> libspotfinder.so.0.0.1 libspotfinder.so.0 -> libspotfinder.so.0.0.1 libspotfinder.so.0.0.1 libxcif.so -> libxcif.so.0.0.1 libxcif.so.0 -> libxcif.so.0.0.1 libxcif.so.0.0.1 sent 58,834,325 bytes received 519 bytes 117,669,688.00 bytes/sec total size is 58,816,962 speedup is 1.00 building file list ... done annlib_adaptbx/ annlib_adaptbx/ann_adaptor.h sent 2,228 bytes received 38 bytes 4,532.00 bytes/sec total size is 2,068 speedup is 0.91 building file list ... done boost_adaptbx/ boost_adaptbx/boost_range_python.hpp boost_adaptbx/convertible.h boost_adaptbx/exporting.hpp boost_adaptbx/floating_point_exceptions.h boost_adaptbx/hash.h boost_adaptbx/iterator_range.h boost_adaptbx/optional_conversions.h boost_adaptbx/precompiled.h boost_adaptbx/python_streambuf.h boost_adaptbx/std_pair_conversion.h boost_adaptbx/std_pair_fwd.h boost_adaptbx/swig_arg.hpp boost_adaptbx/tuple_conversion.h boost_adaptbx/graph/ boost_adaptbx/graph/graph_export_adaptor.hpp boost_adaptbx/graph/graph_type.hpp boost_adaptbx/graph/maximum_clique_greedy.hpp boost_adaptbx/graph/maximum_clique_rascal.hpp boost_adaptbx/graph/vertex_map.hpp boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy.h sent 73,879 bytes received 386 bytes 148,530.00 bytes/sec total size is 72,301 speedup is 0.97 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/basic.h cbflib_adaptbx/detectors/buffer_based_service.h cbflib_adaptbx/detectors/cbf_adaptor.h cbflib_adaptbx/detectors/cbf_byte_offset_optimized.h cbflib_adaptbx/detectors/mar_adaptor.h cbflib_adaptbx/detectors/boost_python/ cbflib_adaptbx/detectors/boost_python/cbf_binary_adaptor.h cbflib_adaptbx/detectors/boost_python/general_cbf_write.h sent 22,309 bytes received 158 bytes 44,934.00 bytes/sec total size is 21,627 speedup is 0.96 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/ccp4_ccplib_fem.hpp ccp4io_adaptbx/ccp4_diskio_fem.hpp ccp4io_adaptbx/ccp4_fftlib_fem.hpp ccp4io_adaptbx/ccp4_library_fem.hpp ccp4io_adaptbx/ccp4_maplib_fem.hpp ccp4io_adaptbx/ccp4_mtzlib_fem.hpp ccp4io_adaptbx/ccp4_other_fem.hpp ccp4io_adaptbx/ccp4_parser_f.h ccp4io_adaptbx/ccp4_parser_fem.hpp ccp4io_adaptbx/ccp4_symlib_fem.hpp ccp4io_adaptbx/cmaplib_f.h ccp4io_adaptbx/cmtzlib_f.h ccp4io_adaptbx/csymlib_f.h ccp4io_adaptbx/library_f.h ccp4io_adaptbx/printf_wrappers.h ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/fftlib.hpp sent 87,983 bytes received 326 bytes 176,618.00 bytes/sec total size is 86,686 speedup is 0.98 building file list ... done cctbx/ cctbx/adptbx.h cctbx/anharmonic.h cctbx/coordinates.h cctbx/crystal_orientation.h cctbx/cumulative_intensity_distribution.h cctbx/error.h cctbx/french_wilson.h cctbx/hendrickson_lattman.h cctbx/import_scitbx_af.h cctbx/miller.h cctbx/restraints.h cctbx/tagged_value.h cctbx/uctbx.h cctbx/adp_restraints/ cctbx/adp_restraints/adp_restraints.h cctbx/adp_restraints/adp_similarity.h cctbx/adp_restraints/aniso_restraints.h cctbx/adp_restraints/fixed_u_eq_adp.h cctbx/adp_restraints/isotropic_adp.h cctbx/adp_restraints/rigid_bond.h cctbx/adp_restraints/rigu.h cctbx/adptbx/ cctbx/adptbx/hirshfeld.h cctbx/covariance/ cctbx/covariance/covariance.h cctbx/crystal/ cctbx/crystal/asu_clusters.h cctbx/crystal/close_packing.h cctbx/crystal/coordination_sequences.h cctbx/crystal/direct_space_asu.h cctbx/crystal/incremental_pairs.h cctbx/crystal/namespace.h cctbx/crystal/neighbors_fast.h cctbx/crystal/neighbors_simple.h cctbx/crystal/pair_tables.h cctbx/crystal/site_cluster_analysis.h cctbx/crystal/symmetry.h cctbx/crystal/workarounds_bpl.h cctbx/dmtbx/ cctbx/dmtbx/triplet_generator.h cctbx/dmtbx/triplet_phase_relation.h cctbx/eltbx/ cctbx/eltbx/attenuation_coefficient.h cctbx/eltbx/basic.h cctbx/eltbx/chemical_elements.h cctbx/eltbx/covalent_radii.h cctbx/eltbx/electron_scattering.h cctbx/eltbx/fp_fdp.h cctbx/eltbx/henke.h cctbx/eltbx/icsd_radii.h cctbx/eltbx/neutron.h cctbx/eltbx/sasaki.h cctbx/eltbx/tiny_pse.h cctbx/eltbx/wavelengths.h cctbx/eltbx/xray_scattering.h cctbx/eltbx/xray_scattering/ cctbx/eltbx/xray_scattering/form_factor.h cctbx/eltbx/xray_scattering/gaussian.h cctbx/eltbx/xray_scattering/n_gaussian.h cctbx/eltbx/xray_scattering/n_gaussian_raw.h cctbx/examples/ cctbx/examples/merging/ cctbx/examples/merging/postrefine_base.h cctbx/examples/merging/xscale_prototype_core.h cctbx/geometry/ cctbx/geometry/geometry.h cctbx/geometry_restraints/ cctbx/geometry_restraints/angle.h cctbx/geometry_restraints/asu_cache.h cctbx/geometry_restraints/bond.h cctbx/geometry_restraints/bond_misc.h cctbx/geometry_restraints/bond_similarity.h cctbx/geometry_restraints/bond_sorted.h cctbx/geometry_restraints/chirality.h cctbx/geometry_restraints/dihedral.h cctbx/geometry_restraints/motif.h cctbx/geometry_restraints/namespace.h cctbx/geometry_restraints/nonbonded.h cctbx/geometry_restraints/nonbonded_sorted.h cctbx/geometry_restraints/parallelity.h cctbx/geometry_restraints/planarity.h cctbx/geometry_restraints/proxy_select.h cctbx/geometry_restraints/shared_wrapper_pickle.hpp cctbx/geometry_restraints/sorted_asu_proxies.h cctbx/geometry_restraints/utils.h cctbx/maptbx/ cctbx/maptbx/asymmetric_map.h cctbx/maptbx/average_densities.h cctbx/maptbx/connectivity.h cctbx/maptbx/coordinate_transformers.h cctbx/maptbx/copy.h cctbx/maptbx/fft.h cctbx/maptbx/fsc.h cctbx/maptbx/ft_analytical_1d_point_scatterer_at_origin.h cctbx/maptbx/grid_indices_around_sites.h cctbx/maptbx/grid_tags.h cctbx/maptbx/gridding.h cctbx/maptbx/histogram.h cctbx/maptbx/interpolation.h cctbx/maptbx/loft.h cctbx/maptbx/map_accumulator.h cctbx/maptbx/marked_grid_points.h cctbx/maptbx/mask.h cctbx/maptbx/mask_utils.h cctbx/maptbx/namespace.h cctbx/maptbx/peak_search.h cctbx/maptbx/resolution.h cctbx/maptbx/skeletons.h cctbx/maptbx/sphericity.h cctbx/maptbx/standard_deviations_around_sites.hpp cctbx/maptbx/statistics.h cctbx/maptbx/structure_factors.h cctbx/maptbx/target_and_gradients.h cctbx/maptbx/utils.h cctbx/maptbx/accessors/ cctbx/maptbx/accessors/c_grid_p1.h cctbx/maptbx/accessors/c_grid_padded_p1.h cctbx/maptbx/bcr/ cctbx/maptbx/bcr/bcr.h cctbx/maptbx/bcr/vrm.h cctbx/masks/ cctbx/masks/around_atoms.h cctbx/masks/flood_fill.h cctbx/math/ cctbx/math/array_utils.h cctbx/math/cos_sin_table.h cctbx/math/loop_n_from_m.h cctbx/math/mod.h cctbx/miller/ cctbx/miller/amplitude_normalisation.h cctbx/miller/asu.h cctbx/miller/bins.h cctbx/miller/change_basis.h cctbx/miller/expand_to_p1.h cctbx/miller/f_calc_map.h cctbx/miller/index_generator.h cctbx/miller/index_span.h cctbx/miller/lookup_utils.h cctbx/miller/match.h cctbx/miller/match_bijvoet_mates.h cctbx/miller/match_indices.h cctbx/miller/match_multi_indices.h cctbx/miller/math.h cctbx/miller/merge_equivalents.h cctbx/miller/phase_integrator.h cctbx/miller/phase_transfer.h cctbx/miller/randomize_amplitude_and_phase.h cctbx/miller/slices.h cctbx/miller/sym_equiv.h cctbx/miller/union_of_indices.h cctbx/multipolar/ cctbx/multipolar/aspherical.h cctbx/sgtbx/ cctbx/sgtbx/basic.h cctbx/sgtbx/brick.h cctbx/sgtbx/change_of_basis_op.h cctbx/sgtbx/find_affine.h cctbx/sgtbx/group_codes.h cctbx/sgtbx/lattice_symmetry.h cctbx/sgtbx/lattice_tr.h cctbx/sgtbx/miller_ops.h cctbx/sgtbx/operator_from_axis_direction.h cctbx/sgtbx/parse_string.h cctbx/sgtbx/phase_info.h cctbx/sgtbx/reciprocal_space_asu.h cctbx/sgtbx/reciprocal_space_reference_asu.h cctbx/sgtbx/reference_settings.h cctbx/sgtbx/rot_mx.h cctbx/sgtbx/rot_mx_hash.h cctbx/sgtbx/rot_mx_info.h cctbx/sgtbx/rotation_matrices.h cctbx/sgtbx/row_echelon_solve.h cctbx/sgtbx/rt_mx.h cctbx/sgtbx/rt_mx_hash.h cctbx/sgtbx/search_symmetry.h cctbx/sgtbx/select_generators.h cctbx/sgtbx/seminvariant.h cctbx/sgtbx/site_constraints.h cctbx/sgtbx/site_symmetry.h cctbx/sgtbx/site_symmetry_table.h cctbx/sgtbx/smith_normal_form.h cctbx/sgtbx/space_group.h cctbx/sgtbx/space_group_hash.h cctbx/sgtbx/space_group_type.h cctbx/sgtbx/sym_equiv_sites.h cctbx/sgtbx/symbols.h cctbx/sgtbx/sys_abs_equiv.h cctbx/sgtbx/tensor_rank_2.h cctbx/sgtbx/tensors.h cctbx/sgtbx/tr_group.h cctbx/sgtbx/tr_group_hash.h cctbx/sgtbx/tr_vec.h cctbx/sgtbx/tr_vec_hash.h cctbx/sgtbx/utils.h cctbx/sgtbx/wyckoff.h cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/asymmetric_unit.h cctbx/sgtbx/direct_space_asu/proto/cut.h cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.h cctbx/sgtbx/direct_space_asu/proto/expressions.h cctbx/sgtbx/direct_space_asu/proto/facet_collection.h cctbx/sgtbx/direct_space_asu/proto/reference_table.h cctbx/sgtbx/direct_space_asu/proto/shortcuts.h cctbx/sgtbx/direct_space_asu/proto/small_vec_math.h cctbx/symmetry_search/ cctbx/symmetry_search/translation_refinement.h cctbx/translation_search/ cctbx/translation_search/fast_nv1995.h cctbx/translation_search/fast_terms.h cctbx/translation_search/namespace.h cctbx/translation_search/symmetry_flags.h cctbx/translation_search/fast_nv1995/ cctbx/translation_search/fast_nv1995/combinations.h cctbx/translation_search/fast_nv1995/intermediates.h cctbx/translation_search/fast_nv1995/summations.h cctbx/uctbx/ cctbx/uctbx/fast_minimum_reduction.h cctbx/uctbx/niggli_reduction.h cctbx/uctbx/determine_unit_cell/ cctbx/uctbx/determine_unit_cell/NCDist.h cctbx/xray/ cctbx/xray/conversions.h cctbx/xray/curvatures_simple.h cctbx/xray/each_hkl_gradients_direct.h cctbx/xray/extinction.h cctbx/xray/f_model.h cctbx/xray/fast_gradients.h cctbx/xray/gradient_flags.h cctbx/xray/gradients_direct.h cctbx/xray/grouped_data.h cctbx/xray/hr_ht_cache.h cctbx/xray/minimization.h cctbx/xray/observations.h cctbx/xray/packing_order.h cctbx/xray/parameter_map.h cctbx/xray/sampled_model_density.h cctbx/xray/sampling_base.h cctbx/xray/sampling_loop.h cctbx/xray/scatterer.h cctbx/xray/scatterer_flags.h cctbx/xray/scatterer_utils.h cctbx/xray/scattering_type_registry.h cctbx/xray/sigmaa.h cctbx/xray/structure_factors_direct.h cctbx/xray/structure_factors_simple.h cctbx/xray/targets.h cctbx/xray/twin_component.h cctbx/xray/twin_targets.h cctbx/xray/targets/ cctbx/xray/targets/common_results.h cctbx/xray/targets/correlation.h cctbx/xray/targets/least_squares.h cctbx/xray/targets/mlf.h cctbx/xray/targets/mlhl.h cctbx/xray/targets/mli.h cctbx/xray/targets/shelxl_wght_ls.hpp sent 1,947,416 bytes received 4,458 bytes 3,903,748.00 bytes/sec total size is 1,930,152 speedup is 0.99 building file list ... done cma_es/ cma_es/cma/ cma_es/cma/cmaes.h cma_es/cma/cmaes_interface.h sent 6,886 bytes received 60 bytes 13,892.00 bytes/sec total size is 6,671 speedup is 0.96 building file list ... done sent 199 bytes received 12 bytes 422.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done dxtbx/ dxtbx/error.h dxtbx/imageset.h dxtbx/array_family/ dxtbx/array_family/flex_table.h dxtbx/array_family/flex_table_suite.h dxtbx/array_family/ref_pickle_double_buffered.h dxtbx/boost_python/ dxtbx/boost_python/compression.h dxtbx/format/ dxtbx/format/image.h dxtbx/format/boost_python/ dxtbx/format/boost_python/cbf_read_buffer.h dxtbx/masking/ dxtbx/masking/goniometer_shadow_masking.h dxtbx/masking/masking.h dxtbx/model/ dxtbx/model/beam.h dxtbx/model/crystal.h dxtbx/model/detector.h dxtbx/model/experiment.h dxtbx/model/experiment_list.h dxtbx/model/goniometer.h dxtbx/model/history.h dxtbx/model/kappa_goniometer.h dxtbx/model/model_helpers.h dxtbx/model/multi_axis_goniometer.h dxtbx/model/panel.h dxtbx/model/panel_data.h dxtbx/model/parallax_correction.h dxtbx/model/pixel_to_millimeter.h dxtbx/model/ray_intersection.h dxtbx/model/scan.h dxtbx/model/scan_helpers.h dxtbx/model/spectrum.h dxtbx/model/virtual_panel.h dxtbx/model/boost_python/ dxtbx/model/boost_python/pickle_suite.h dxtbx/model/boost_python/to_from_dict.h sent 402,283 bytes received 629 bytes 805,824.00 bytes/sec total size is 399,803 speedup is 0.99 building file list ... done ./ fem.hpp noexcept_false.hpp fem/ fem/arr.hpp fem/arr_and_str_indices.hpp fem/arr_ref.hpp fem/arr_size.hpp fem/close_chain.hpp fem/common.hpp fem/data.hpp fem/data_of_type.hpp fem/data_type_star.hpp fem/dimension.hpp fem/do.hpp fem/error_utils.hpp fem/file_positioning_chain.hpp fem/format.hpp fem/inquire_chain.hpp fem/intrinsics.hpp fem/intrinsics_extra.hpp fem/io.hpp fem/io_exceptions.hpp fem/main.hpp fem/major_types.hpp fem/open_chain.hpp fem/read.hpp fem/size_t.hpp fem/star.hpp fem/stop.hpp fem/str.hpp fem/str_arr_ref.hpp fem/str_ref.hpp fem/variant.hpp fem/write.hpp fem/zero.hpp fem/utils/ fem/utils/char.hpp fem/utils/double_to_string.hpp fem/utils/equivalence.hpp fem/utils/int_types.hpp fem/utils/misc.hpp fem/utils/path.hpp fem/utils/random.hpp fem/utils/real_as_string.hpp fem/utils/simple_streams.hpp fem/utils/string.hpp fem/utils/string_to_double.hpp fem/utils/string_to_double_fmt.hpp fem/utils/token.hpp sent 204,807 bytes received 918 bytes 411,450.00 bytes/sec total size is 201,540 speedup is 0.98 building file list ... done gltbx/ gltbx/error.h gltbx/error_utils.h gltbx/fonts_ucs.h gltbx/glext.h gltbx/include_opengl.h gltbx/pointer_args_bpl.h gltbx/quadrics.h gltbx/special_wrapper_support.h gltbx/util.h sent 598,793 bytes received 190 bytes 1,197,966.00 bytes/sec total size is 597,954 speedup is 1.00 building file list ... done iotbx/ iotbx/error.h iotbx/detectors/ iotbx/detectors/bruker.h iotbx/detectors/display.h iotbx/detectors/image_divider.h iotbx/detectors/scanbox.h iotbx/detectors/context/ iotbx/detectors/context/spot_xy_convention.h iotbx/dsn6/ iotbx/dsn6/dsn6.hpp iotbx/mtz/ iotbx/mtz/batch.h iotbx/mtz/column.h iotbx/mtz/crystal.h iotbx/mtz/dataset.h iotbx/mtz/object.h iotbx/pdb/ iotbx/pdb/common_residue_names.h iotbx/pdb/hierarchy.h iotbx/pdb/hierarchy_atoms.h iotbx/pdb/hierarchy_bpl.h iotbx/pdb/hybrid_36_c.h iotbx/pdb/hybrid_36_cpp.h iotbx/pdb/input.h iotbx/pdb/modified_aa_names.h iotbx/pdb/modified_rna_dna_names.h iotbx/pdb/namespace.h iotbx/pdb/rna_dna_atom_names.h iotbx/pdb/small_str.h iotbx/pdb/utils.h iotbx/pdb/write_utils.h iotbx/pdb/write_utils_bpl.h iotbx/pdb/xray_structure.h iotbx/shelx/ iotbx/shelx/hklf.h iotbx/xplor/ iotbx/xplor/map_reader.h iotbx/xplor/map_writer.h sent 273,493 bytes received 629 bytes 548,244.00 bytes/sec total size is 270,635 speedup is 0.99 building file list ... done sent 1,290 bytes received 12 bytes 2,604.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done mmtbx/ mmtbx/error.h mmtbx/import_scitbx_af.h mmtbx/alignment/ mmtbx/alignment/align.h mmtbx/alignment/alignment.h mmtbx/alignment/tables.h mmtbx/building/ mmtbx/building/loop_closure/ mmtbx/building/loop_closure/ccd.h mmtbx/bulk_solvent/ mmtbx/bulk_solvent/bulk_solvent.h mmtbx/bulk_solvent/mosaic.h mmtbx/den/ mmtbx/den/den.h mmtbx/dynamics/ mmtbx/dynamics/dynamics.h mmtbx/f_model/ mmtbx/f_model/f_model.h mmtbx/geometry/ mmtbx/geometry/asa.hpp mmtbx/geometry/calculator.hpp mmtbx/geometry/clash.hpp mmtbx/geometry/containment.hpp mmtbx/geometry/flattening.hpp mmtbx/geometry/indexing.hpp mmtbx/geometry/overlap.hpp mmtbx/geometry/primitive.hpp mmtbx/geometry/sphere_surface_sampling.hpp mmtbx/geometry/boost_python/ mmtbx/geometry/boost_python/containment.hpp mmtbx/geometry/boost_python/indexing.hpp mmtbx/geometry_restraints/ mmtbx/geometry_restraints/ramachandran.h mmtbx/geometry_restraints/reference_coordinate.h mmtbx/hydrogens/ mmtbx/hydrogens/hydrogens.h mmtbx/masks/ mmtbx/masks/atom_mask.h mmtbx/masks/grid_symop.h mmtbx/masks/util.h mmtbx/max_lik/ mmtbx/max_lik/max_lik.h mmtbx/max_lik/solvent_distribution_nco_09may2005.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short_uniform.h mmtbx/max_lik/solvent_distribution_nco_14mar2005.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_mod.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_short.h mmtbx/max_lik/wat_dist_r_0_1.h mmtbx/max_lik/wat_dist_r_2p0_2p5.h mmtbx/ncs/ mmtbx/ncs/cartesian_restraints.h mmtbx/ncs/tncs.h mmtbx/pair_interaction/ mmtbx/pair_interaction/interaction.h mmtbx/probe/ mmtbx/probe/Common.h mmtbx/probe/DotSpheres.h mmtbx/probe/Scoring.h mmtbx/probe/SpatialQuery.h mmtbx/reduce/ mmtbx/reduce/InteractionGraph.h mmtbx/reduce/Optimizers.h mmtbx/reduce/PositionReturn.h mmtbx/rotamer/ mmtbx/rotamer/fit.h mmtbx/rsr/ mmtbx/rsr/rsr.h mmtbx/scaling/ mmtbx/scaling/absolute_scaling.h mmtbx/scaling/outlier.h mmtbx/scaling/relative_scaling.h mmtbx/scaling/scaling.h mmtbx/scaling/twinning.h mmtbx/secondary_structure/ mmtbx/secondary_structure/dssp.hpp mmtbx/secondary_structure/identify.hpp mmtbx/tls/ mmtbx/tls/decompose.h mmtbx/tls/optimise_amplitudes.h mmtbx/tls/tls.h mmtbx/tls/utils.h mmtbx/utils/ mmtbx/utils/utils.h mmtbx/validation/ mmtbx/validation/ramachandran/ mmtbx/validation/ramachandran/rama8000_tables.h mmtbx/validation/ramachandran/rama_eval.h sent 2,052,690 bytes received 1,291 bytes 4,107,962.00 bytes/sec total size is 2,046,334 speedup is 1.00 building file list ... done omptbx/ omptbx/lock.h omptbx/omp_or_stubs.h omptbx/stubs.h sent 2,105 bytes received 76 bytes 4,362.00 bytes/sec total size is 1,850 speedup is 0.85 building file list ... done rstbx/ rstbx/backplane.h rstbx/import_scitbx_af.hpp rstbx/apps/ rstbx/apps/stills/ rstbx/apps/stills/simple_integration.h rstbx/bandpass/ rstbx/bandpass/parameters.h rstbx/bandpass/subpixel_joint_model.h rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/sensor.h rstbx/diffraction/ rstbx/diffraction/ewald_sphere.h rstbx/diffraction/partial_spot_position_partial_H.h rstbx/diffraction/reflection_range.h rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/fastbragg.h rstbx/dps_core/ rstbx/dps_core/direction.h rstbx/dps_core/directional_fft.h rstbx/dps_core/dps_core.h rstbx/dps_core/spotclass.h rstbx/indexing_api/ rstbx/indexing_api/indexing_api.h rstbx/simage/ rstbx/simage/image_simple.hpp rstbx/simulation/ rstbx/simulation/sim_xfel1.h rstbx/symmetry/ rstbx/symmetry/constraints/ rstbx/symmetry/constraints/a_g_conversion.h sent 111,359 bytes received 400 bytes 223,518.00 bytes/sec total size is 109,476 speedup is 0.98 building file list ... done scitbx/ scitbx/auto_array.h scitbx/constants.h scitbx/cubicle_neighbors.hpp scitbx/cubicles.h scitbx/error.h scitbx/error_utils.h scitbx/histogram.h scitbx/indexed_value.h scitbx/iso_surface.h scitbx/lbfgs.h scitbx/lbfgsb.h scitbx/mat2.h scitbx/mat3.h scitbx/numerical.h scitbx/r3_utils.hpp scitbx/random.h scitbx/random_legacy_boost_1_63.h scitbx/rational.h scitbx/rotr3.h scitbx/sym_mat2.h scitbx/sym_mat3.h scitbx/type_holder.h scitbx/vec2.h scitbx/vec3.h scitbx/weighted_histogram.h scitbx/array_family/ scitbx/array_family/array_adaptor.h scitbx/array_family/block_iterator.h scitbx/array_family/counts.h scitbx/array_family/error.h scitbx/array_family/flex_types.h scitbx/array_family/initialiser.h scitbx/array_family/linear_interpolation.h scitbx/array_family/loops.h scitbx/array_family/memory.h scitbx/array_family/misc_functions.h scitbx/array_family/owning_ref.h scitbx/array_family/range.h scitbx/array_family/ref.h scitbx/array_family/ref_matrix.h scitbx/array_family/ref_reductions.h scitbx/array_family/selections.h scitbx/array_family/shared.h scitbx/array_family/shared_plain.h scitbx/array_family/simple_io.h scitbx/array_family/simple_tiny_io.h scitbx/array_family/slice.h scitbx/array_family/small.h scitbx/array_family/small_plain.h scitbx/array_family/sort.h scitbx/array_family/tiny.h scitbx/array_family/tiny_mat_ref.h scitbx/array_family/tiny_plain.h scitbx/array_family/tiny_types.h scitbx/array_family/type_traits.h scitbx/array_family/versa.h scitbx/array_family/versa_matrix.h scitbx/array_family/versa_plain.h scitbx/array_family/accessors/ scitbx/array_family/accessors/c_grid.h scitbx/array_family/accessors/c_grid_padded.h scitbx/array_family/accessors/c_grid_padded_periodic.h scitbx/array_family/accessors/c_grid_periodic.h scitbx/array_family/accessors/c_index_1d_calculator.h scitbx/array_family/accessors/c_interval_grid.h scitbx/array_family/accessors/f_grid.h scitbx/array_family/accessors/flex_grid.h scitbx/array_family/accessors/mat_grid.h scitbx/array_family/accessors/packed_matrix.h scitbx/array_family/accessors/rectangular_full_packed.h scitbx/array_family/accessors/row_and_column.h scitbx/array_family/accessors/striding.h scitbx/array_family/accessors/traits.h scitbx/array_family/accessors/trivial.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/byte_str.h scitbx/array_family/boost_python/c_grid_flex_conversions.h scitbx/array_family/boost_python/flex_helpers.h scitbx/array_family/boost_python/flex_pickle_double_buffered.h scitbx/array_family/boost_python/flex_pickle_single_buffered.h scitbx/array_family/boost_python/flex_wrapper.h scitbx/array_family/boost_python/flex_wrapper_complex.h scitbx/array_family/boost_python/numpy_bridge.hpp scitbx/array_family/boost_python/owning_ref_conversions.h scitbx/array_family/boost_python/packed_to_flex_conversions.h scitbx/array_family/boost_python/passing_flex_by_reference.h scitbx/array_family/boost_python/range_wrappers.h scitbx/array_family/boost_python/ref_flex_conversions.h scitbx/array_family/boost_python/ref_from_array.h scitbx/array_family/boost_python/ref_pickle_double_buffered.h scitbx/array_family/boost_python/selections_wrapper.h scitbx/array_family/boost_python/shared_flat_conversions.h scitbx/array_family/boost_python/shared_flex_conversions.h scitbx/array_family/boost_python/shared_wrapper.h scitbx/array_family/boost_python/utils.h scitbx/array_family/detail/ scitbx/array_family/detail/auto_allocator.h scitbx/array_family/detail/generic_array_functors.h scitbx/array_family/detail/generic_array_operators.h scitbx/array_family/detail/misc.h scitbx/array_family/detail/push_back_etc.h scitbx/array_family/detail/reducing_boolean_mem_fun.h scitbx/array_family/detail/ref_helpers.h scitbx/array_family/detail/tiny_helpers.h scitbx/boost_python/ scitbx/boost_python/array_as_list.h scitbx/boost_python/container_conversions.h scitbx/boost_python/cstringio_utils.h scitbx/boost_python/is_polymorphic_workaround.h scitbx/boost_python/iterator_range.hpp scitbx/boost_python/iterator_wrappers.h scitbx/boost_python/pair_as_tuple.hpp scitbx/boost_python/sequence_as_array.h scitbx/boost_python/slice.h scitbx/boost_python/stl_map_as_dict.h scitbx/boost_python/utils.h scitbx/examples/ scitbx/examples/bevington/ scitbx/examples/bevington/prototype_core.h scitbx/fftpack/ scitbx/fftpack/complex_to_complex.h scitbx/fftpack/complex_to_complex_2d.h scitbx/fftpack/complex_to_complex_3d.h scitbx/fftpack/factorization.h scitbx/fftpack/gridding.h scitbx/fftpack/real_to_complex.h scitbx/fftpack/real_to_complex_3d.h scitbx/fftpack/detail/ scitbx/fftpack/detail/real_to_complex_backward.h scitbx/fftpack/detail/real_to_complex_forward.h scitbx/fftpack/detail/ref.h scitbx/glmtbx/ scitbx/glmtbx/family.h scitbx/glmtbx/glm.h scitbx/glmtbx/robust_glm.h scitbx/graphics_utils/ scitbx/graphics_utils/colors.h scitbx/lbfgs/ scitbx/lbfgs/drop_convergence_test.h scitbx/lbfgs/raw.h scitbx/lbfgs/raw_reference.h scitbx/lbfgsb/ scitbx/lbfgsb/fortran_interface.h scitbx/lbfgsb/raw.h scitbx/line_search/ scitbx/line_search/more_thuente_1994.h scitbx/line_search/more_thuente_1994_raw.h scitbx/lstbx/ scitbx/lstbx/normal_equations.h scitbx/math/ scitbx/math/2d_zernike_moments.h scitbx/math/accumulators.h scitbx/math/angle_derivative.h scitbx/math/approx_equal.h scitbx/math/atanh.h scitbx/math/basic_statistics.h scitbx/math/bessel.h scitbx/math/cartesian_product_fixed_size.hpp scitbx/math/chebyshev.h scitbx/math/compile_time.h scitbx/math/continued_fraction.h scitbx/math/copysign.h scitbx/math/cubic_equation.h scitbx/math/dihedral.h scitbx/math/distance_difference.h scitbx/math/distributions.h scitbx/math/eigensystem.h scitbx/math/erf.h scitbx/math/euler_angles.h scitbx/math/fast_approx_math.h scitbx/math/floating_point_epsilon.h scitbx/math/g_function.h scitbx/math/gamma.h scitbx/math/gaussian_fit_1d_analytical.h scitbx/math/gcd.h scitbx/math/golay.h scitbx/math/halton.h scitbx/math/icosahedron.h scitbx/math/imaginary.h scitbx/math/inertia_tensor.h scitbx/math/interpolation.h scitbx/math/jacks_expf.h scitbx/math/lambertw.h scitbx/math/least_squares_plane.h scitbx/math/linear_correlation.h scitbx/math/linear_interpolation.h scitbx/math/linear_regression.h scitbx/math/mean_and_variance.h scitbx/math/minimum_covering_sphere.h scitbx/math/modulo.h scitbx/math/namespace.h scitbx/math/numeric_limits.h scitbx/math/orthonormal_basis.h scitbx/math/parabolic_cylinder_d.h scitbx/math/phase_error.h scitbx/math/polygon_intersection.h scitbx/math/principal_axes_of_inertia.h scitbx/math/quadrature.h scitbx/math/r3_rotation.h scitbx/math/resample.h scitbx/math/rotate_around_axis.h scitbx/math/rotation.h scitbx/math/superpose.h scitbx/math/tetrahedron.h scitbx/math/traits.h scitbx/math/unimodular_generator.h scitbx/math/utils.h scitbx/math/weighted_covariance.h scitbx/math/zernike.h scitbx/math/zernike_moments.h scitbx/math/erf/ scitbx/math/erf/constants.h scitbx/math/erf/engine.h scitbx/math/gaussian/ scitbx/math/gaussian/fit.h scitbx/math/gaussian/namespace.h scitbx/math/gaussian/sum.h scitbx/math/gaussian/term.h scitbx/matrix/ scitbx/matrix/as_xyz.h scitbx/matrix/cholesky.h scitbx/matrix/delta_tensors.h scitbx/matrix/diagonal.h scitbx/matrix/eigensystem.h scitbx/matrix/givens.h scitbx/matrix/householder.h scitbx/matrix/inversion.h scitbx/matrix/lu_decomposition.h scitbx/matrix/matrix_vector_operations.h scitbx/matrix/move.h scitbx/matrix/multiply.h scitbx/matrix/norms.h scitbx/matrix/outer_product.h scitbx/matrix/packed.h scitbx/matrix/row_echelon.h scitbx/matrix/row_echelon_full_pivoting.h scitbx/matrix/row_echelon_full_pivoting_impl.h scitbx/matrix/row_echelon_full_pivoting_small.h scitbx/matrix/special_matrices.h scitbx/matrix/svd.h scitbx/matrix/symmetric_rank_1_update.h scitbx/matrix/tensor_rank_2.h scitbx/matrix/tensors.h scitbx/matrix/tests.h scitbx/matrix/transpose_multiply.h scitbx/matrix/triangular_systems.h scitbx/matrix/vector_operations.h scitbx/matrix/tests/ scitbx/matrix/tests/utils.h scitbx/minpack/ scitbx/minpack/levenberg_marquardt.h scitbx/minpack/raw.h scitbx/misc/ scitbx/misc/file_utils.h scitbx/misc/positive_getitem_index.h scitbx/misc/split_lines.h scitbx/random/ scitbx/random/mersenne_twister.h scitbx/random/variate_generator.h scitbx/random/boost_python/ scitbx/random/boost_python/random.h scitbx/rigid_body/ scitbx/rigid_body/array_packing.h scitbx/rigid_body/body_lib.h scitbx/rigid_body/body_t.h scitbx/rigid_body/featherstone.h scitbx/rigid_body/joint_lib.h scitbx/rigid_body/joint_t.h scitbx/rigid_body/matrix_helpers.h scitbx/rigid_body/namespace.h scitbx/rigid_body/spatial_lib.h scitbx/rigid_body/tardy.h scitbx/serialization/ scitbx/serialization/base_256.h scitbx/serialization/double_buffered.h scitbx/serialization/single_buffered.h scitbx/slatec/ scitbx/slatec/lib_c.h scitbx/slatec/lib_cpp.h scitbx/sparse/ scitbx/sparse/approx_equal.h scitbx/sparse/dfs.h scitbx/sparse/io.h scitbx/sparse/lu_factorization.h scitbx/sparse/matrix.h scitbx/sparse/operators.h scitbx/sparse/random.h scitbx/sparse/triangular.h scitbx/sparse/util.h scitbx/sparse/vector.h scitbx/sparse/boost_python/ scitbx/sparse/boost_python/vector.h scitbx/stl/ scitbx/stl/map_as_python_dict.h scitbx/stl/map_fwd.h scitbx/stl/map_wrapper.h scitbx/stl/set_wrapper.h scitbx/stl/vector_as_python_list.h scitbx/stl/vector_io.h scitbx/stl/vector_wrapper.h scitbx/suffixtree/ scitbx/suffixtree/builder.hpp scitbx/suffixtree/edge.hpp scitbx/suffixtree/exception.hpp scitbx/suffixtree/glyph.hpp scitbx/suffixtree/iterator.hpp scitbx/suffixtree/matching_statistics.hpp scitbx/suffixtree/tree.hpp scitbx/suffixtree/word.hpp scitbx/suffixtree/boost_python/ scitbx/suffixtree/boost_python/edge_exports.hpp scitbx/suffixtree/boost_python/iterator_wrapper.hpp scitbx/suffixtree/boost_python/object_extensions.hpp scitbx/suffixtree/boost_python/tree_exports.hpp scitbx/util/ scitbx/util/cpu_timer.h scitbx/wigner/ scitbx/wigner/wigner3j.h sent 1,906,823 bytes received 5,521 bytes 3,824,688.00 bytes/sec total size is 1,886,607 speedup is 0.99 building file list ... done sent 146 bytes received 12 bytes 316.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/error.h smtbx/import_cctbx.h smtbx/import_scitbx_af.h smtbx/ab_initio/ smtbx/ab_initio/density_modification.h smtbx/refinement/ smtbx/refinement/import_cctbx_xray.h smtbx/refinement/least_squares.h smtbx/refinement/weighting_schemes.h smtbx/refinement/constraints/ smtbx/refinement/constraints/affine.h smtbx/refinement/constraints/direction.h smtbx/refinement/constraints/geometrical_hydrogens.h smtbx/refinement/constraints/occupancy.h smtbx/refinement/constraints/proxy.h smtbx/refinement/constraints/reparametrisation.h smtbx/refinement/constraints/rigid.h smtbx/refinement/constraints/same_group.h smtbx/refinement/constraints/scaled_adp.h smtbx/refinement/constraints/scatterer_parameters.h smtbx/refinement/constraints/shared.h smtbx/refinement/constraints/special_position.h smtbx/refinement/constraints/symmetry_equivalent.h smtbx/refinement/constraints/u_eq_dependent_u_iso.h smtbx/refinement/constraints/u_iso_dependent_u_iso.h smtbx/refinement/restraints/ smtbx/refinement/restraints/origin_fixing.h smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/standard_xray.h smtbx/structure_factors/direct/table_based.h sent 182,156 bytes received 512 bytes 365,336.00 bytes/sec total size is 179,686 speedup is 0.98 building file list ... done spotfinder/ spotfinder/applications/ spotfinder/applications/find_active_area.h spotfinder/core_toolbox/ spotfinder/core_toolbox/distl.h spotfinder/core_toolbox/hough.h spotfinder/core_toolbox/libdistl.h spotfinder/core_toolbox/spot_shapes.h spotfinder/core_toolbox/spot_types.h spotfinder/core_toolbox/spotfilter.h spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/singlemask.h spotfinder/dxtbx_toolbox/ spotfinder/dxtbx_toolbox/distl.h spotfinder/dxtbx_toolbox/libdistl.h sent 42,950 bytes received 221 bytes 86,342.00 bytes/sec total size is 41,966 speedup is 0.97 building file list ... done tbxx/ tbxx/alignment.h tbxx/error_utils.hpp tbxx/libc_backtrace.hpp tbxx/optional_copy.hpp tbxx/pretty_type_name.hpp tbxx/time_accu.hpp sent 12,022 bytes received 133 bytes 24,310.00 bytes/sec total size is 11,532 speedup is 0.95 building file list ... done sent 152 bytes received 12 bytes 328.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done xcif/ xcif/include/ xcif/include/xcif/ xcif/include/xcif/data_model.h xcif/include/xcif/mapped_file.h xcif/include/xcif/numeric.h xcif/include/xcif/string_view.h xcif/include/xcif/tokenizer.h xcif/regression/ xcif/regression/cpp/ xcif/regression/cpp/test_utils.h sent 24,012 bytes received 145 bytes 48,314.00 bytes/sec total size is 23,452 speedup is 0.97 building file list ... done ./ boost_adaptbx/ boost_adaptbx/type_id_eq.h cctbx/boost_python/ cctbx/boost_python/flex_fwd.h scitbx/lbfgs_fem.hpp scitbx/array_family/ scitbx/array_family/operator_traits_builtin.h scitbx/array_family/ref_algebra.h scitbx/array_family/ref_apply.h scitbx/array_family/shared_algebra.h scitbx/array_family/shared_apply.h scitbx/array_family/shared_plain_apply.h scitbx/array_family/shared_reductions.h scitbx/array_family/small_algebra.h scitbx/array_family/small_apply.h scitbx/array_family/small_plain_apply.h scitbx/array_family/small_reductions.h scitbx/array_family/tiny_algebra.h scitbx/array_family/tiny_apply.h scitbx/array_family/tiny_plain_apply.h scitbx/array_family/tiny_reductions.h scitbx/array_family/versa_algebra.h scitbx/array_family/versa_apply.h scitbx/array_family/versa_plain_apply.h scitbx/array_family/versa_reductions.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/flex_fwd.h scitbx/array_family/detail/ scitbx/array_family/detail/operator_functors.h scitbx/array_family/detail/std_imports.h smtbx/boost_python/ smtbx/boost_python/flex_fwd.h sent 347,329 bytes received 531 bytes 695,720.00 bytes/sec total size is 345,070 speedup is 0.99 building file list ... done sent 250 bytes received 12 bytes 524.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/ boost_adaptbx/command_line/ boost_adaptbx/command_line/__init__.py boost_adaptbx/command_line/divide_by_zero.py boost_adaptbx/command_line/double_overflow.py boost_adaptbx/command_line/gcd.py boost_adaptbx/command_line/inexact.py boost_adaptbx/command_line/int_overflow.py boost_adaptbx/command_line/lcm.py boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py boost_adaptbx/command_line/segmentation_fault.py boost_adaptbx/command_line/show_environ_usage.py boost_adaptbx/command_line/show_platform_info.py sent 7,880 bytes received 231 bytes 16,222.00 bytes/sec total size is 6,883 speedup is 0.85 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/command_line/ cbflib_adaptbx/command_line/__init__.py cbflib_adaptbx/command_line/dump.py sent 1,518 bytes received 60 bytes 3,156.00 bytes/sec total size is 1,215 speedup is 0.77 building file list ... done sent 143 bytes received 12 bytes 310.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done cctbx/ cctbx/command_line/ cctbx/command_line/__init__.py cctbx/command_line/auto_sharpen.py cctbx/command_line/brehm_diederichs.py cctbx/command_line/cctbx_test_nightly.py cctbx/command_line/cod_select_and_pickle.py cctbx/command_line/diffuse.py cctbx/command_line/eltbx.show_fp_fdp.py cctbx/command_line/euclidean_model_matching.py cctbx/command_line/find_reticular_twin_laws.py cctbx/command_line/form_factor_query.py cctbx/command_line/precession_view.py cctbx/command_line/qscore.py cctbx/command_line/samosa_join.py cctbx/command_line/samosa_scale.py cctbx/command_line/segment_and_split_map.py cctbx/command_line/space_group_info.py cctbx/command_line/structure_factor_timings.py cctbx/command_line/subgroups.py cctbx/command_line/version.py cctbx/command_line/wavelength_units.py cctbx/command_line/web.install.csh sent 43,164 bytes received 421 bytes 87,170.00 bytes/sec total size is 39,872 speedup is 0.91 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done crys3d/ crys3d/command_line/ crys3d/command_line/HKLinfo.py crys3d/command_line/HKLviewer.py crys3d/command_line/__init__.py crys3d/command_line/compare_datasets.py crys3d/command_line/hklview.py crys3d/command_line/make_install_HKLviewer_ChimeraX.py crys3d/command_line/model_viewer.py crys3d/command_line/multiplicity_viewer.py crys3d/command_line/qttbx.view_structure.py crys3d/command_line/visualize_r_factors.py sent 32,580 bytes received 212 bytes 65,584.00 bytes/sec total size is 31,684 speedup is 0.97 building file list ... done dxtbx/ dxtbx/command_line/ dxtbx/command_line/__init__.py dxtbx/command_line/any2nexus.py dxtbx/command_line/debug_memory.py dxtbx/command_line/depends_on.py dxtbx/command_line/detector_superpose.py dxtbx/command_line/display_parallax_correction.py dxtbx/command_line/dlsnxs2cbf.py dxtbx/command_line/image2pickle.py dxtbx/command_line/image_availability.py dxtbx/command_line/image_average.py dxtbx/command_line/install_format.py dxtbx/command_line/overload.py dxtbx/command_line/plot_detector_models.py dxtbx/command_line/print_header.py dxtbx/command_line/print_matching_images.py dxtbx/command_line/radial_average.py dxtbx/command_line/read_sequence.py dxtbx/command_line/saturation.py dxtbx/command_line/show_mask_info.py dxtbx/command_line/show_matching_formats.py dxtbx/command_line/show_registry.py dxtbx/command_line/simulate_collection.py sent 112,421 bytes received 440 bytes 225,722.00 bytes/sec total size is 110,557 speedup is 0.98 building file list ... done fable/ fable/command_line/ fable/command_line/__init__.py fable/command_line/cout.py fable/command_line/fem_include_search_paths.py fable/command_line/insert_write_at_start_of_each_procedure.py fable/command_line/read.py fable/command_line/show_calls.py fable/command_line/split.py sent 16,372 bytes received 155 bytes 33,054.00 bytes/sec total size is 15,611 speedup is 0.94 building file list ... done gltbx/ gltbx/command_line/ gltbx/command_line/__init__.py gltbx/command_line/try_imports.py sent 857 bytes received 60 bytes 1,834.00 bytes/sec total size is 606 speedup is 0.66 building file list ... done iotbx/ iotbx/command_line/ iotbx/command_line/__init__.py iotbx/command_line/biomt_reconstruction.py iotbx/command_line/blast_pdb.py iotbx/command_line/build_phil_cache.py iotbx/command_line/cbf_read.py iotbx/command_line/cif.as_miller_arrays.py iotbx/command_line/cif.as_xray_structure.py iotbx/command_line/cif.validate.py iotbx/command_line/cif_as_pdb.py iotbx/command_line/cns.reflection_reader.py iotbx/command_line/cns.sdb_reader.py iotbx/command_line/cns.transfer_crystal_symmetry.py iotbx/command_line/cns_as_mtz.py iotbx/command_line/crystal_symmetry_from_any.py iotbx/command_line/csv_as_mtz.py iotbx/command_line/dano_as_amplitudes.py iotbx/command_line/detector_image_as_png.py iotbx/command_line/distance_least_squares.py iotbx/command_line/dtrek.to_cns.py iotbx/command_line/effective_resolution.py iotbx/command_line/emma.py iotbx/command_line/explore_metric_symmetry.py iotbx/command_line/export_scalepack_unmerged.py iotbx/command_line/file_reader.py iotbx/command_line/flip_symmetric_amino_acids.py iotbx/command_line/french_wilson.py iotbx/command_line/get_pubmed_citation.py iotbx/command_line/lattice_symmetry.py iotbx/command_line/merging_statistics.py iotbx/command_line/mtrix_reconstruction.py iotbx/command_line/mtz.dump.py iotbx/command_line/mtz_as_cif.py iotbx/command_line/patterson_map.py iotbx/command_line/pdb.as_xray_structure.py iotbx/command_line/pdb.b_factor_stats.py iotbx/command_line/pdb.box_around_molecule.py iotbx/command_line/pdb.hierarchy.py iotbx/command_line/pdb.insert_scale_records.py iotbx/command_line/pdb.join_fragment_files.py iotbx/command_line/pdb.link_as_geometry_restraints_edits.py iotbx/command_line/pdb.print_sequence.py iotbx/command_line/pdb.superpose_atoms_by_name.py iotbx/command_line/pdb.superpose_centers_of_mass.py iotbx/command_line/pdb_add_conformations.py iotbx/command_line/pdb_as_cif.py iotbx/command_line/pdb_as_fasta.py iotbx/command_line/pdb_cif_conversion.py iotbx/command_line/pdb_get_citation.py iotbx/command_line/pdb_labels_comparison.py iotbx/command_line/pdb_labels_diff.py iotbx/command_line/pdb_remediator.py iotbx/command_line/pdb_show_connectivity.py iotbx/command_line/pdb_split_models.py iotbx/command_line/phil.py iotbx/command_line/poscar_as_xray_structure.py iotbx/command_line/r_free_flags_accumulation.py iotbx/command_line/r_free_flags_as_cns.py iotbx/command_line/r_free_flags_completion_simple.py iotbx/command_line/reflection_file_converter.py iotbx/command_line/reflection_file_editor.py iotbx/command_line/reflection_file_reader.py iotbx/command_line/reflection_statistics.py iotbx/command_line/reindex.py iotbx/command_line/shelx.as_cif.py iotbx/command_line/shelx.as_xray_structure.py iotbx/command_line/shelx.dump_as_python.py iotbx/command_line/show_distances.py iotbx/command_line/show_systematic_absences.py iotbx/command_line/simple_map_coefficients.py iotbx/command_line/sort_atoms.py iotbx/command_line/split_data_cif.py iotbx/command_line/symmetry_search.py iotbx/command_line/unique_with_biomt.py iotbx/command_line/xplor.map.show_summary.py sent 252,599 bytes received 1,428 bytes 508,054.00 bytes/sec total size is 246,561 speedup is 0.97 building file list ... done libtbx/ libtbx/command_line/ libtbx/command_line/__init__.py libtbx/command_line/add_docstrings_with_ai.py libtbx/command_line/analyse_code_comments.py libtbx/command_line/any2unix.py libtbx/command_line/assert_line_count.py libtbx/command_line/assert_not_show_diff.py libtbx/command_line/assert_stdin.py libtbx/command_line/assert_stdin_contains_strings.py libtbx/command_line/assert_stdin_ends_with.py libtbx/command_line/bash.sh libtbx/command_line/bibtex.sh libtbx/command_line/bootstrap.py libtbx/command_line/bundle_as_exe.py libtbx/command_line/bundle_as_selfx.csh libtbx/command_line/cctbx_chunk.py libtbx/command_line/check_libcpp.py libtbx/command_line/clean_clutter.py libtbx/command_line/clear_paths.py libtbx/command_line/configure.bat libtbx/command_line/configure.sh libtbx/command_line/create_cctbx_bundle_for_installer.py libtbx/command_line/create_install_script_bat.py libtbx/command_line/create_installer.py libtbx/command_line/create_mac_app.py libtbx/command_line/create_selfx.py libtbx/command_line/create_unzipsfx.py libtbx/command_line/create_windows_exe.py libtbx/command_line/csh.sh libtbx/command_line/dtrace.py libtbx/command_line/easy_qsub.py libtbx/command_line/env_run.py libtbx/command_line/epydoc_run.py libtbx/command_line/exec.sh libtbx/command_line/extract_code_from_txt.py libtbx/command_line/find_clutter.py libtbx/command_line/find_files.py libtbx/command_line/find_in_repositories.py libtbx/command_line/find_old_style_classes.py libtbx/command_line/find_pdb_mmcif_problems.py libtbx/command_line/find_reserved_names.py libtbx/command_line/find_under_build.py libtbx/command_line/find_untested.py libtbx/command_line/find_unused_imports.py libtbx/command_line/find_unused_imports_crude.py libtbx/command_line/gdb.sh libtbx/command_line/git_avoid_merges.py libtbx/command_line/help.py libtbx/command_line/import_all_ext.py libtbx/command_line/import_all_python.py libtbx/command_line/install.py libtbx/command_line/install_conda.py libtbx/command_line/ipython_shell_start.py libtbx/command_line/latex.sh libtbx/command_line/line_count.py libtbx/command_line/list_files.py libtbx/command_line/list_modules.py libtbx/command_line/list_source_files_sorted_by_size.py libtbx/command_line/make_dist.py libtbx/command_line/make_sphinx_html.py libtbx/command_line/nequal.py libtbx/command_line/parallel_simple.py libtbx/command_line/path_utility.py libtbx/command_line/pdflatex.sh libtbx/command_line/phil.py libtbx/command_line/prime_factors_of.py libtbx/command_line/printenv.py libtbx/command_line/py_compile_all.py libtbx/command_line/raise_exception_for_testing.py libtbx/command_line/refresh.bat libtbx/command_line/refresh.sh libtbx/command_line/reindent.py libtbx/command_line/remote_processing.py libtbx/command_line/remove_tree.py libtbx/command_line/remove_unused_imports.py libtbx/command_line/resource_monitor_plot.py libtbx/command_line/run_pickled_function.py libtbx/command_line/run_tests_parallel.py libtbx/command_line/scons.py libtbx/command_line/seconds_since_the_epoch.py libtbx/command_line/sge_available_slots.py libtbx/command_line/sge_qstat_counts.py libtbx/command_line/sh.sh libtbx/command_line/show_all_on_path.py libtbx/command_line/show_bin_path.py libtbx/command_line/show_build_options.py libtbx/command_line/show_build_path.py libtbx/command_line/show_but_no_repr.py libtbx/command_line/show_commands.py libtbx/command_line/show_date_and_time.py libtbx/command_line/show_dist_paths.py libtbx/command_line/show_env.py libtbx/command_line/show_environ_usage.py libtbx/command_line/show_full_command_path.py libtbx/command_line/show_host_and_user.py libtbx/command_line/show_include_paths.py libtbx/command_line/show_lib_path.py libtbx/command_line/show_module_dependencies.py libtbx/command_line/show_number_of_processors.py libtbx/command_line/show_numeric_version.py libtbx/command_line/show_numpy_version.py libtbx/command_line/show_python_dependencies.py libtbx/command_line/show_python_sys_executable.py libtbx/command_line/show_pythonpath.py libtbx/command_line/show_repository_paths.py libtbx/command_line/show_tests.py libtbx/command_line/show_variable_names.py libtbx/command_line/sphinx_build.py libtbx/command_line/start_binary_bundle.py libtbx/command_line/start_process.py libtbx/command_line/tcsh.sh libtbx/command_line/unpack_in_sources.csh libtbx/command_line/valgrind.sh libtbx/command_line/wait_for_file.py sent 230,594 bytes received 2,169 bytes 465,526.00 bytes/sec total size is 221,559 speedup is 0.95 building file list ... done mmtbx/ mmtbx/command_line/ mmtbx/command_line/__init__.py mmtbx/command_line/altloc_remediate.py mmtbx/command_line/angle.py mmtbx/command_line/apply_ncs_to_ligand.py mmtbx/command_line/arginine_geometry.py mmtbx/command_line/atom_valence_simple.py mmtbx/command_line/barbed_wire_analysis.py mmtbx/command_line/cablam.py mmtbx/command_line/cablam_idealization.py mmtbx/command_line/cbetadev.py mmtbx/command_line/cc_star.py mmtbx/command_line/chiral_validation.py mmtbx/command_line/cif_as_mtz.py mmtbx/command_line/clashscore.py mmtbx/command_line/clashscore2.py mmtbx/command_line/comparama.py mmtbx/command_line/debug_riding.py mmtbx/command_line/density_modification.py mmtbx/command_line/development_aev.py mmtbx/command_line/development_fem.py mmtbx/command_line/distance_difference.py mmtbx/command_line/dynamics.py mmtbx/command_line/electrons.py mmtbx/command_line/emringer.py mmtbx/command_line/emringer_score.py mmtbx/command_line/estimate_bijvoet_ratio.py mmtbx/command_line/f000.py mmtbx/command_line/fab_elbow_angle.py mmtbx/command_line/fake_f_obs.py mmtbx/command_line/fetch_pdb.py mmtbx/command_line/find_peaks_holes.py mmtbx/command_line/find_residue_in_pdb.py mmtbx/command_line/find_tls_groups.py mmtbx/command_line/fmodel.py mmtbx/command_line/fobs_minus_fobs_map.py mmtbx/command_line/geometry_minimization.py mmtbx/command_line/grow_density.py mmtbx/command_line/hbond.py mmtbx/command_line/helix_sheet_recs_as_pdb_files.py mmtbx/command_line/holton_geometry_validation.py mmtbx/command_line/hydrogenate.py mmtbx/command_line/kinemage.py mmtbx/command_line/ligand_restraints_validation.py mmtbx/command_line/map_box.py mmtbx/command_line/map_comparison.py mmtbx/command_line/map_to_model_histogram.py mmtbx/command_line/map_to_structure_factors.py mmtbx/command_line/maps.py mmtbx/command_line/mask.py mmtbx/command_line/massage_data.py mmtbx/command_line/matthews.py mmtbx/command_line/maximum_entropy_map.py mmtbx/command_line/model_idealization.py mmtbx/command_line/model_map.py mmtbx/command_line/model_model_distances.py mmtbx/command_line/model_vs_data.py mmtbx/command_line/model_vs_map.py mmtbx/command_line/model_vs_sequence.py mmtbx/command_line/models_as_chains.py mmtbx/command_line/molprobity.py mmtbx/command_line/mon_lib_cif_triage.py mmtbx/command_line/mp_geo.py mmtbx/command_line/mp_validate_bonds.py mmtbx/command_line/mtz2map.py mmtbx/command_line/next_gen_atom_typing.py mmtbx/command_line/next_gen_residue_typing.py mmtbx/command_line/nonbonded_overlaps.py mmtbx/command_line/omegalyze.py mmtbx/command_line/pdb_atom_selection.py mmtbx/command_line/pdb_interpretation.py mmtbx/command_line/pdbtools.py mmtbx/command_line/perigee.py mmtbx/command_line/plan_sad_experiment.py mmtbx/command_line/polder.py mmtbx/command_line/prepare_pdb_deposition.py mmtbx/command_line/probe2.py mmtbx/command_line/probescore_ligand.py mmtbx/command_line/process_predicted_model.py mmtbx/command_line/prune_model.py mmtbx/command_line/quantum_interface.py mmtbx/command_line/r_factor_statistics.py mmtbx/command_line/rama_z.py mmtbx/command_line/ramalyze.py mmtbx/command_line/rank_scale_map.py mmtbx/command_line/real_space_correlation.py mmtbx/command_line/real_space_diff_map.py mmtbx/command_line/rebuild_cablam_cache.py mmtbx/command_line/rebuild_rotarama_cache.py mmtbx/command_line/reciprocal_space_arrays.py mmtbx/command_line/reduce2.py mmtbx/command_line/reduce_cryoem_resolution.py mmtbx/command_line/refine_anomalous_substructure.py mmtbx/command_line/remove_outliers.py mmtbx/command_line/ribbons.py mmtbx/command_line/rigid_bond_test.py mmtbx/command_line/ringer.py mmtbx/command_line/rna_validate.py mmtbx/command_line/rna_validate_bonds.py mmtbx/command_line/rna_validate_puckers.py mmtbx/command_line/rna_validate_suites.py mmtbx/command_line/rotalyze.py mmtbx/command_line/search_pdb_symmetry.py mmtbx/command_line/secondary_structure_restraints.py mmtbx/command_line/secondary_structure_validation.py mmtbx/command_line/select_best_starting_model.py mmtbx/command_line/show_r_factors_by_shell.py mmtbx/command_line/sisa.py mmtbx/command_line/sort_hetatms.py mmtbx/command_line/ss_idealization.py mmtbx/command_line/suitename.py mmtbx/command_line/suitename_old.py mmtbx/command_line/super.py mmtbx/command_line/superpose.py mmtbx/command_line/taam_minus_iam.py mmtbx/command_line/table_one.py mmtbx/command_line/tls.py mmtbx/command_line/tls_analysis.py mmtbx/command_line/tls_as_xyz.py mmtbx/command_line/undowser.py mmtbx/command_line/undowser2.py mmtbx/command_line/validate_H_cl_app.py mmtbx/command_line/validate_ligands.py mmtbx/command_line/validation_summary.py mmtbx/command_line/verify_mon_lib_data.py mmtbx/command_line/water_b_factors.py mmtbx/command_line/where_is_that_cif_file.py mmtbx/command_line/xmanip.py mmtbx/command_line/xtrapol8.py mmtbx/command_line/xtriage.py mmtbx/regression/ mmtbx/regression/command_line/ mmtbx/regression/command_line/tst_find_residue_in_pdb.py sent 730,665 bytes received 2,498 bytes 1,466,326.00 bytes/sec total size is 720,141 speedup is 0.98 building file list ... done sent 70 bytes received 12 bytes 164.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done rstbx/ rstbx/command_line/ rstbx/command_line/__init__.py rstbx/command_line/example_viewer.py rstbx/command_line/index.py rstbx/command_line/simage.create.py rstbx/command_line/simage.explore_completeness.py rstbx/command_line/simage.solver.py rstbx/command_line/simage.wx_display.py rstbx/command_line/slip_viewer.py rstbx/command_line/viewer.py sent 12,290 bytes received 193 bytes 24,966.00 bytes/sec total size is 11,139 speedup is 0.89 building file list ... done scitbx/ scitbx/command_line/ scitbx/command_line/__init__.py scitbx/command_line/apply_tapenade_hints.py scitbx/command_line/generate_error_h.py scitbx/command_line/histogram.py scitbx/command_line/show_exp_times.py scitbx/command_line/show_sizes.py scitbx/command_line/unicode_examples.py sent 11,838 bytes received 155 bytes 23,986.00 bytes/sec total size is 10,021 speedup is 0.84 building file list ... done sent 146 bytes received 12 bytes 316.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/command_line/ smtbx/command_line/__init__.py smtbx/command_line/absolute_structure.py smtbx/command_line/anom_refine.py smtbx/command_line/benchmark_refinement.py smtbx/command_line/masks.py smtbx/command_line/refine.py sent 38,567 bytes received 136 bytes 77,406.00 bytes/sec total size is 37,436 speedup is 0.97 building file list ... done spotfinder/ spotfinder/command_line/ spotfinder/command_line/__init__.py spotfinder/command_line/find_active_area.py spotfinder/command_line/image_viewer.py spotfinder/command_line/mp_spotfinder_server_read_file.py spotfinder/command_line/signal_strength.py spotfinder/command_line/sweep_strength.py spotfinder/command_line/thin_client.py sent 23,558 bytes received 155 bytes 47,426.00 bytes/sec total size is 22,750 speedup is 0.96 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done wxtbx/ wxtbx/command_line/ wxtbx/command_line/__init__.py wxtbx/command_line/anomalous_differences_histogram.py wxtbx/command_line/b_plot.py wxtbx/command_line/inspect_r_free_flags.py wxtbx/command_line/loggraph.py wxtbx/command_line/pdb_editor.py wxtbx/command_line/pdb_statistics.py wxtbx/command_line/plan_sad_experiment.py wxtbx/command_line/plot_anomalous_scattering.py wxtbx/command_line/show_file_info.py wxtbx/command_line/wxpython.py wxtbx/command_line/xtriage.py sent 17,077 bytes received 250 bytes 34,654.00 bytes/sec total size is 16,108 speedup is 0.93 building file list ... done sent 157 bytes received 12 bytes 338.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 250 bytes received 12 bytes 524.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/graph/ boost_adaptbx/graph/tests/ boost_adaptbx/graph/tests/tst_graph.py boost_adaptbx/graph/tests/tst_graph_breadth_first_search.py boost_adaptbx/graph/tests/tst_graph_clustering_algorithm.py boost_adaptbx/graph/tests/tst_graph_connected_component_algorithm.py boost_adaptbx/graph/tests/tst_graph_graph_structure_comparison.py boost_adaptbx/graph/tests/tst_graph_maximum_clique.py boost_adaptbx/graph/tests/tst_graph_metric.py boost_adaptbx/graph/tests/tst_graph_min_cut_max_flow.py boost_adaptbx/graph/tests/tst_graph_minimum_cut_enumerate.py boost_adaptbx/graph/tests/tst_graph_utility.py boost_adaptbx/tests/ boost_adaptbx/tests/tst_boost_thread.py boost_adaptbx/tests/tst_char_array.py boost_adaptbx/tests/tst_deprecation_tools.py boost_adaptbx/tests/tst_libc_backtrace.py boost_adaptbx/tests/tst_optional.py boost_adaptbx/tests/tst_optional_copy.cpp boost_adaptbx/tests/tst_optional_copy.h boost_adaptbx/tests/tst_python_streambuf.py boost_adaptbx/tests/tst_rational.py boost_adaptbx/tests/tst_std_pair.py boost_adaptbx/tests/tst_stderr_stdout.py boost_adaptbx/tests/tst_stdin.py boost_adaptbx/tests/tst_stdout.py boost_adaptbx/tests/tst_string_representation.py boost_adaptbx/tests/tst_swig_args.py boost_adaptbx/tests/tst_tuple.py sent 91,631 bytes received 515 bytes 184,292.00 bytes/sec total size is 89,629 speedup is 0.97 building file list ... done cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/tst_memory.cpp sent 1,204 bytes received 34 bytes 2,476.00 bytes/sec total size is 967 speedup is 0.78 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/tst.py ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/tst_fftlib.py sent 9,499 bytes received 60 bytes 19,118.00 bytes/sec total size is 9,204 speedup is 0.96 building file list ... done cctbx/adp_restraints/ cctbx/adp_restraints/tst_ext.py cctbx/adptbx/ cctbx/adptbx/boost_python/ cctbx/adptbx/boost_python/tst_adptbx.py cctbx/adptbx/boost_python/tst_hirshfeld.py cctbx/array_family/ cctbx/array_family/boost_python/ cctbx/array_family/boost_python/tst_flex.py cctbx/covariance/ cctbx/covariance/tests/ cctbx/covariance/tests/tst_covariance.py cctbx/crystal/ cctbx/crystal/tst_distance_based_connectivity.py cctbx/crystal/tst_ext.py cctbx/crystal/tst_super_cell.py cctbx/development/ cctbx/development/tst_cns_epsilon.py cctbx/development/tst_cns_hl.py cctbx/dispersion/ cctbx/dispersion/tests/ cctbx/dispersion/tests/tst_kramers_kronig.py cctbx/dispersion/tests/tst_kramers_kronig_helper.py cctbx/dispersion/tests/tst_kramers_kronig_optimize.py cctbx/dmtbx/ cctbx/dmtbx/boost_python/ cctbx/dmtbx/boost_python/tst_dmtbx.py cctbx/eltbx/ cctbx/eltbx/tests/ cctbx/eltbx/tests/tst_attenuation_coefficient.py cctbx/eltbx/tests/tst_chemical_elements.py cctbx/eltbx/tests/tst_covalent_radii.py cctbx/eltbx/tests/tst_formula.py cctbx/eltbx/tests/tst_henke.py cctbx/eltbx/tests/tst_icsd_radii.py cctbx/eltbx/tests/tst_neutron.py cctbx/eltbx/tests/tst_sasaki.py cctbx/eltbx/tests/tst_tiny_pse.py cctbx/eltbx/tests/tst_wavelengths.py cctbx/eltbx/tests/tst_xray_scattering.py cctbx/examples/ cctbx/examples/tst_exp_i_alpha_derivatives.py cctbx/examples/tst_g_exp_i_alpha_derivatives.py cctbx/examples/tst_phase_o_phrenia.py cctbx/examples/tst_space_subgroups.py cctbx/examples/tst_structure_factor_derivatives.py cctbx/examples/tst_structure_factor_derivatives_2.py cctbx/examples/tst_structure_factor_derivatives_3.py cctbx/examples/tst_structure_factor_derivatives_4.py cctbx/examples/merging/ cctbx/examples/merging/tst_permutations.py cctbx/geometry/ cctbx/geometry/tests/ cctbx/geometry/tests/tst_geometry.py cctbx/geometry_restraints/ cctbx/geometry_restraints/tst_angle_derivs.py cctbx/geometry_restraints/tst_ext.py cctbx/geometry_restraints/tst_motif.py cctbx/geometry_restraints/tst_process_nonbonded_proxies.py cctbx/geometry_restraints/tst_proxy_registry.py cctbx/maptbx/ cctbx/maptbx/tst_MapPeakLocator.py cctbx/maptbx/tst_asymmetric_map.py cctbx/maptbx/tst_atom_curves.py cctbx/maptbx/tst_atom_radius_as_central_peak_width.py cctbx/maptbx/tst_bcr.py cctbx/maptbx/tst_ccp.py cctbx/maptbx/tst_get_percentile_cutoffs.py cctbx/maptbx/tst_interpolation.py cctbx/maptbx/tst_interpolation_2.py cctbx/maptbx/tst_loft.py cctbx/maptbx/tst_map_peak_3d_as_2d.py cctbx/maptbx/tst_mask.py cctbx/maptbx/tst_peak_volume_estimate.py cctbx/maptbx/tst_qscore.py cctbx/maptbx/tst_real_space_refinement_simple.py cctbx/maptbx/tst_resolution_from_map_and_model.py cctbx/maptbx/tst_target_and_gradients.py cctbx/maptbx/bcr/ cctbx/maptbx/bcr/tst_adp_refine.py cctbx/maptbx/bcr/tst_example.py cctbx/maptbx/bcr/tst_qmap_02.py cctbx/maptbx/bcr/tst_table.py cctbx/maptbx/bcr/tst_two_atoms.py cctbx/maptbx/bcr/tst_vrm.py cctbx/maptbx/bcr/tst_vrm2.py cctbx/maptbx/boost_python/ cctbx/maptbx/boost_python/tst_maptbx.py cctbx/masks/ cctbx/masks/tests/ cctbx/masks/tests/tst_flood_fill.py cctbx/math/ cctbx/math/boost_python/ cctbx/math/boost_python/tst_math.py cctbx/miller/ cctbx/miller/tst_map_to_asu_isym.py cctbx/miller/tst_reindexing.py cctbx/miller/boost_python/ cctbx/miller/boost_python/tst_miller.py cctbx/multipolar/ cctbx/multipolar/regression/ cctbx/multipolar/regression/tst_multipolar.py cctbx/omz/ cctbx/omz/tst_bfgs.py cctbx/omz/tst_cod.csh cctbx/omz/tst_dev.py cctbx/regression/ cctbx/regression/tst_adp_aniso_restraints.py cctbx/regression/tst_adp_constraints.py cctbx/regression/tst_adp_constraints_cartesian.py cctbx/regression/tst_amplitude_normalisation.py cctbx/regression/tst_change_basis.py cctbx/regression/tst_connectivity.py cctbx/regression/tst_connectivity_allsym.py cctbx/regression/tst_coordination_sequences.py cctbx/regression/tst_create_models_or_maps.py cctbx/regression/tst_crystal.py cctbx/regression/tst_crystal_asu_clusters.py cctbx/regression/tst_crystal_close_packing.py cctbx/regression/tst_diffuse.py cctbx/regression/tst_direct_scaling.py cctbx/regression/tst_direct_space_asu.py cctbx/regression/tst_emma.py cctbx/regression/tst_expand_to_p1.py cctbx/regression/tst_f_model.py cctbx/regression/tst_fast_nv1995.py cctbx/regression/tst_fcalc_fft_stability.py cctbx/regression/tst_find_best_cell.py cctbx/regression/tst_fourier_transform_real_part_at_x.py cctbx/regression/tst_french_wilson.py cctbx/regression/tst_geometry_restraints.py cctbx/regression/tst_geometry_restraints_2.py cctbx/regression/tst_geometry_restraints_lbfgs.py cctbx/regression/tst_grm_modifications.py cctbx/regression/tst_grm_modifications_rm.py cctbx/regression/tst_grm_pickling.py cctbx/regression/tst_grouped_data.py cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py cctbx/regression/tst_krivy_gruber.py cctbx/regression/tst_loc_res.py cctbx/regression/tst_map_is_periodic.py cctbx/regression/tst_map_weights_for_symmetry_summation.py cctbx/regression/tst_maptbx_box.py cctbx/regression/tst_maptbx_mask.py cctbx/regression/tst_maptbx_structure_factors.py cctbx/regression/tst_math_module.py cctbx/regression/tst_mem.py cctbx/regression/tst_mem_2.py cctbx/regression/tst_miller.py cctbx/regression/tst_miller_data_manipulation.py cctbx/regression/tst_miller_double_step_filtration.py cctbx/regression/tst_miller_fft_map.py cctbx/regression/tst_miller_lookup_utils.py cctbx/regression/tst_miller_merge_equivalents.py cctbx/regression/tst_miller_statistics.py cctbx/regression/tst_niggli_reduction_cpp.py cctbx/regression/tst_pair_asu_table.py cctbx/regression/tst_pointgroup_tools.py cctbx/regression/tst_prepare_map_for_docking.py cctbx/regression/tst_r_free_utils.py cctbx/regression/tst_reciprocal_space_asu.py cctbx/regression/tst_refine_xray_curvs.py cctbx/regression/tst_reflection_statistics.py cctbx/regression/tst_sampled_model_density.py cctbx/regression/tst_sf_low_res_accuracy.py cctbx/regression/tst_sgtbx.py cctbx/regression/tst_sgtbx_denominators.py cctbx/regression/tst_sgtbx_harker.py cctbx/regression/tst_sgtbx_lattice_symmetry.py cctbx/regression/tst_sgtbx_site_constraints.py cctbx/regression/tst_sgtbx_special_op_simplifier.py cctbx/regression/tst_sgtbx_subgroups.py cctbx/regression/tst_sgtbx_tidy_pickling.py cctbx/regression/tst_show_cosets.py cctbx/regression/tst_space_group_type_tidy_cb_op_t.py cctbx/regression/tst_sphericity.py cctbx/regression/tst_statistics_graphs.py cctbx/regression/tst_triplet_generator.py cctbx/regression/tst_twin_target.py cctbx/regression/tst_wavelength_units.py cctbx/regression/tst_web_change_basis.py cctbx/regression/tst_weighting_schemes.py cctbx/regression/tst_wilson_plot.py cctbx/regression/tst_xray.py cctbx/regression/tst_xray_derivatives.py cctbx/regression/tst_xray_fast_gradients.py cctbx/regression/tst_xray_minimization.py cctbx/regression/tst_xray_minimization_failure.py cctbx/regression/tst_xray_target_functors.py cctbx/sgtbx/ cctbx/sgtbx/boost_python/ cctbx/sgtbx/boost_python/tst_N_fold_rot.py cctbx/sgtbx/boost_python/tst_sgtbx.py cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cctbx/sgtbx/direct_space_asu/proto/tst_asu.py cctbx/symmetry_search/ cctbx/symmetry_search/tests/ cctbx/symmetry_search/tests/tst_from_map.py cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py cctbx/translation_search/ cctbx/translation_search/boost_python/ cctbx/translation_search/boost_python/tst_translation_search.py cctbx/uctbx/ cctbx/uctbx/boost_python/ cctbx/uctbx/boost_python/tst_crystal_orientation.py cctbx/uctbx/boost_python/tst_uctbx.py cctbx/uctbx/lrl/ cctbx/uctbx/lrl/tst_match_lattices.py cctbx/xray/ cctbx/xray/boost_python/ cctbx/xray/boost_python/tst_f_model.py cctbx/xray/boost_python/tst_targets_fd.py cctbx/xray/boost_python/tst_xray.py cctbx/xray/observations/ cctbx/xray/observations/tst_observations.py cctbx/xray/targets/ cctbx/xray/targets/tst_r1.py cctbx/xray/targets/tst_shelxl_wght_ls.py sent 2,114,472 bytes received 3,428 bytes 4,235,800.00 bytes/sec total size is 2,100,271 speedup is 0.99 building file list ... done cma_es/ cma_es/tst_cma_es.py sent 3,163 bytes received 38 bytes 6,402.00 bytes/sec total size is 3,008 speedup is 0.94 building file list ... done crys3d/regression/ crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py crys3d/regression/tst_hklinfo.py crys3d/regression/tst_websocket.py sent 42,852 bytes received 129 bytes 85,962.00 bytes/sec total size is 42,219 speedup is 0.98 building file list ... done sent 593 bytes received 12 bytes 1,210.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done fable/tst_cout.py fable/tst_cout_compile.py fable/tst_equivalence.py fable/tst_ext.py fable/tst_read.py fable/test/ fable/test/tst_command_line.py fable/test/tst_io.py fable/test/tst_separate_files.py fable/test/tst_show_calls.py sent 152,805 bytes received 186 bytes 305,982.00 bytes/sec total size is 151,869 speedup is 0.99 building file list ... done gltbx/tst.py gltbx/tst_ellipsoids.py gltbx/tst_fonts.py gltbx/tst_viewer_utils.py sent 8,497 bytes received 88 bytes 17,170.00 bytes/sec total size is 8,108 speedup is 0.94 building file list ... done iotbx/bioinformatics/ iotbx/bioinformatics/test/ iotbx/bioinformatics/test/tst_alignment_as_hsearch.py iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py iotbx/bioinformatics/test/tst_local_blast.py iotbx/bioinformatics/test/tst_ncbi_blast_xml.py iotbx/ccp4_map/ iotbx/ccp4_map/tst.py iotbx/ccp4_map/tst_input.map iotbx/cif/ iotbx/cif/tests/ iotbx/cif/tests/tst_citations.py iotbx/cif/tests/tst_cod.py iotbx/cif/tests/tst_crystal_symmetry_builder.py iotbx/cif/tests/tst_geometry.py iotbx/cif/tests/tst_lex_parse_build.py iotbx/cif/tests/tst_model.py iotbx/cif/tests/tst_model_builder.py iotbx/cif/tests/tst_parser.py iotbx/cif/tests/tst_restraints.py iotbx/cif/tests/tst_ucif_examples_compilation.py iotbx/cif/tests/tst_validation.py iotbx/cns/ iotbx/cns/tst_cns.py iotbx/detectors/ iotbx/detectors/tst_adsc.py iotbx/detectors/tst_cbf_comp_read_meth.py iotbx/detectors/tst_debug_write.py iotbx/detectors/tst_detectors.py iotbx/detectors/tst_py_cbf.py iotbx/dsn6/ iotbx/dsn6/tst.py iotbx/examples/ iotbx/examples/tst_mtz_free_flipper.py iotbx/examples/pdb_truncate_to_ala/ iotbx/examples/pdb_truncate_to_ala/tst.py iotbx/gui_tools/ iotbx/gui_tools/tst.py iotbx/kriber/ iotbx/kriber/tst_strudat.py iotbx/mtz/ iotbx/mtz/tst.py iotbx/mtz/tst_dano.py iotbx/mtz/tst_ext.py iotbx/mtz/tst_extract_from_symmetry_lib.py iotbx/mtz/tst_miller_dict.py iotbx/mtz/tst_unmerged.py iotbx/pdb/ iotbx/pdb/tst_atom_name_interpretation.py iotbx/pdb/tst_atom_selection.py iotbx/pdb/tst_atom_selection_string.py iotbx/pdb/tst_ext.py iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py iotbx/pdb/tst_hierarchy.py iotbx/pdb/tst_hierarchy_atom_sort.py iotbx/pdb/tst_hierarchy_flip_symmetric.py iotbx/pdb/tst_hierarchy_flip_symmetric_2.py iotbx/pdb/tst_input_pickling.py iotbx/pdb/tst_mmcif.py iotbx/pdb/tst_mmcif_hierarchy.py iotbx/pdb/tst_mmcif_hierarchy_2.py iotbx/pdb/tst_pdb.py iotbx/pdb/tst_read_mtrix_records_from_cif.py iotbx/pdb/tst_rna_dna_atom_names.py iotbx/pdb/tst_secondary_structure.py iotbx/pdb/tst_secondary_structure_2.py iotbx/pdb/tst_tls.py iotbx/pdb/tst_utils.py iotbx/pdb/remediation/ iotbx/pdb/remediation/tst_remediator.py iotbx/regression/ iotbx/regression/tst_add_conformations.py iotbx/regression/tst_all_chain_ids.py iotbx/regression/tst_atom_selections_10k.py iotbx/regression/tst_bioinformatics.py iotbx/regression/tst_box_around_molecule.py iotbx/regression/tst_cif_1.py iotbx/regression/tst_cif_as_pdb_1atom.py iotbx/regression/tst_cli_parser.py iotbx/regression/tst_crystal_symmetry_from_any.py iotbx/regression/tst_csv_utils.py iotbx/regression/tst_data_manager.py iotbx/regression/tst_data_plots.py iotbx/regression/tst_examples.py iotbx/regression/tst_export_scalepack_unmerged.py iotbx/regression/tst_extract_xtal_data.py iotbx/regression/tst_fetch.py iotbx/regression/tst_file_io.py iotbx/regression/tst_file_reader.py iotbx/regression/tst_generate_n_char_string.py iotbx/regression/tst_group_rounding.py iotbx/regression/tst_hierarchy_altlocs.py iotbx/regression/tst_hierarchy_copy_select.py iotbx/regression/tst_hierarchy_forward_compatible_pdb.py iotbx/regression/tst_hierarchy_id_str.py iotbx/regression/tst_hierarchy_long_chain_ids_1.py iotbx/regression/tst_hierarchy_long_resname_1.py iotbx/regression/tst_hierarchy_long_resname_2.py iotbx/regression/tst_hierarchy_long_resname_3.py iotbx/regression/tst_hierarchy_long_resname_4.py iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py iotbx/regression/tst_hierarchy_occupancies_rounding.py iotbx/regression/tst_hierarchy_pdb_v3.py iotbx/regression/tst_lattice_symmetry.py iotbx/regression/tst_map_manager.py iotbx/regression/tst_map_manager_2.py iotbx/regression/tst_map_manager_wrapping.py iotbx/regression/tst_map_model_manager.py iotbx/regression/tst_map_model_manager_2.py iotbx/regression/tst_map_model_manager_3.py iotbx/regression/tst_map_model_manager_4.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py iotbx/regression/tst_map_model_manager_call_consistency.py iotbx/regression/tst_map_model_manager_cif.py iotbx/regression/tst_map_model_manager_external_sharpening_7.py iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py iotbx/regression/tst_map_model_manager_local_resolution_10.py iotbx/regression/tst_map_model_manager_model_sharpening_5.py iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py iotbx/regression/tst_map_model_manager_tls_from_map_8.py iotbx/regression/tst_map_tools.py iotbx/regression/tst_merging_statistics.py iotbx/regression/tst_miller_sort_asu.py iotbx/regression/tst_mmcif_input.py iotbx/regression/tst_mmcif_multimodel.py iotbx/regression/tst_mmcif_segids.py iotbx/regression/tst_mmcif_to_from_hierarchy.py iotbx/regression/tst_mrc_io.py iotbx/regression/tst_mtz_as_cif.py iotbx/regression/tst_patterson.py iotbx/regression/tst_pdb_as_cif.py iotbx/regression/tst_pdb_as_fasta.py iotbx/regression/tst_pdb_cif_cells.py iotbx/regression/tst_pdb_cif_inputs.py iotbx/regression/tst_pdb_link_records.py iotbx/regression/tst_pdbx_mmcif_tutorial.py iotbx/regression/tst_phases.py iotbx/regression/tst_phil.py iotbx/regression/tst_poscar.py iotbx/regression/tst_reflection_file_editor.py iotbx/regression/tst_reflection_file_reader.py iotbx/regression/tst_reflection_file_utils.py iotbx/regression/tst_reflection_statistics.py iotbx/regression/tst_reindex.py iotbx/regression/tst_restraints_merge.py iotbx/regression/tst_selected_hierarchy_flip.py iotbx/regression/tst_show_systematic_absences.py iotbx/regression/tst_simple_map_coefficients.py iotbx/regression/tst_simple_parser.py iotbx/regression/tst_sort_atoms.py iotbx/regression/tst_split_data_cif.py iotbx/regression/tst_split_models.py iotbx/regression/tst_symmetry.py iotbx/regression/tst_text_detection.py iotbx/regression/tst_wildcard.py iotbx/regression/tst_xray_scale.py iotbx/regression/ncs/ iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py iotbx/regression/ncs/tst_ncs.py iotbx/regression/ncs/tst_ncs_groups_preprocessing.py iotbx/regression/ncs/tst_ncs_input.py iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py iotbx/regression/ncs/tst_ncs_reordered_chains.py iotbx/regression/ncs/tst_ncs_search_broken_chain.py iotbx/regression/ncs/tst_ncs_search_ligs.py iotbx/regression/ncs/tst_ncs_search_shortcut_1.py iotbx/regression/ncs/tst_ncs_user_selections.py iotbx/regression/ncs/tst_ncs_without_validation.py iotbx/regression/secondary_structure/ iotbx/regression/secondary_structure/tst_annotation.py iotbx/regression/secondary_structure/tst_annotation_long.py iotbx/regression/secondary_structure/tst_sheet.py iotbx/scalepack/ iotbx/scalepack/tst_merge.py iotbx/scalepack/tst_no_merge_original_index.py iotbx/shelx/ iotbx/shelx/tst_fvar_encoding.py iotbx/shelx/tst_hklf.py iotbx/shelx/tst_lex_parse_build.py iotbx/shelx/tst_writer.py iotbx/xds/ iotbx/xds/tests/ iotbx/xds/tests/tst_integrate_hkl.py iotbx/xds/tests/tst_spots_xds.py iotbx/xds/tests/tst_xds_inp.py iotbx/xds/tests/tst_xparm.py iotbx/xplor/ iotbx/xplor/tst_xplormap.py sent 2,574,072 bytes received 3,258 bytes 5,154,660.00 bytes/sec total size is 2,561,196 speedup is 0.99 building file list ... done libtbx/tst_add_docstrings_with_ai.py libtbx/tst_binary_search.py libtbx/tst_citation_encoding.py libtbx/tst_citations.py libtbx/tst_conda_dispatcher.py libtbx/tst_containers.py libtbx/tst_dlite.py libtbx/tst_easy_mp.py libtbx/tst_easy_mp_multicore.py libtbx/tst_easy_mp_state.py libtbx/tst_easy_pickle.py libtbx/tst_find_unused_imports.py libtbx/tst_fully_buffered_timeout.py libtbx/tst_mahalanobis.py libtbx/tst_math_utils.py libtbx/tst_object_oriented_patterns.py libtbx/tst_path.py libtbx/tst_program_template.py libtbx/tst_python_code_parsing.py libtbx/tst_representation.py libtbx/tst_run_tests_parallel_retry.py libtbx/tst_run_tests_parallel_unique_dirs.py libtbx/tst_runtime_utils.py libtbx/tst_scheduling.py libtbx/tst_str_utils.py libtbx/tst_thread_utils.py libtbx/tst_topological_sort.py libtbx/tst_utils.py libtbx/tst_version.py libtbx/tst_word_index_generator.py libtbx/tst_xmlrpc_utils.py libtbx/langchain/ libtbx/langchain/agent/ libtbx/langchain/agent/tst_agent_enhancements.py libtbx/langchain/tests/ libtbx/langchain/tests/tst_abort_message_all_stops.py libtbx/langchain/tests/tst_action_item_1.py libtbx/langchain/tests/tst_advice_preprocessing.py libtbx/langchain/tests/tst_after_program_fill_from_raw.py libtbx/langchain/tests/tst_after_program_prompt.py libtbx/langchain/tests/tst_agent_build_info.py libtbx/langchain/tests/tst_api_schema.py libtbx/langchain/tests/tst_audit_fixes.py libtbx/langchain/tests/tst_autobuild_hl_recovery.py libtbx/langchain/tests/tst_autobuild_sequence_waiver.py libtbx/langchain/tests/tst_autosol_bugs.py libtbx/langchain/tests/tst_backward_compat.py libtbx/langchain/tests/tst_best_files_tracker.py libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py libtbx/langchain/tests/tst_canary.py libtbx/langchain/tests/tst_cc_key_extraction.py libtbx/langchain/tests/tst_classify_mtz_type_001.py libtbx/langchain/tests/tst_command_builder.py libtbx/langchain/tests/tst_contract_compliance.py libtbx/langchain/tests/tst_copies_tracking.py libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py libtbx/langchain/tests/tst_cryoem_stop_validation.py libtbx/langchain/tests/tst_data_input_filter.py libtbx/langchain/tests/tst_decision_flow.py libtbx/langchain/tests/tst_default_models.py libtbx/langchain/tests/tst_density_modify_experiment_type.py libtbx/langchain/tests/tst_dependencies.py libtbx/langchain/tests/tst_diagnosed_failure_stop.py libtbx/langchain/tests/tst_diagnostic_messages.py libtbx/langchain/tests/tst_directive_extractor.py libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py libtbx/langchain/tests/tst_directive_extractor_grounding.py libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py libtbx/langchain/tests/tst_directive_layer_diagnostics.py libtbx/langchain/tests/tst_directive_validation.py libtbx/langchain/tests/tst_directive_validator.py libtbx/langchain/tests/tst_directive_validator_typo_hints.py libtbx/langchain/tests/tst_directives_integration.py libtbx/langchain/tests/tst_display_data_model.py libtbx/langchain/tests/tst_dock_and_stop.py libtbx/langchain/tests/tst_docs_tools.py libtbx/langchain/tests/tst_dry_run.py libtbx/langchain/tests/tst_error_analyzer.py libtbx/langchain/tests/tst_error_classifier.py libtbx/langchain/tests/tst_event_formatter_file_categories.py libtbx/langchain/tests/tst_event_system.py libtbx/langchain/tests/tst_explanation_prompts.py libtbx/langchain/tests/tst_extended_stop_phrasings.py libtbx/langchain/tests/tst_extract_raw_advice.py libtbx/langchain/tests/tst_extraction_failure_visibility.py libtbx/langchain/tests/tst_fabricated_stop_condition.py libtbx/langchain/tests/tst_file_categorization.py libtbx/langchain/tests/tst_file_categorizer.py libtbx/langchain/tests/tst_file_encoding.py libtbx/langchain/tests/tst_file_utils.py libtbx/langchain/tests/tst_fix_verification.py libtbx/langchain/tests/tst_force_no_ai_server.py libtbx/langchain/tests/tst_gate_evaluator.py libtbx/langchain/tests/tst_general_resolver.py libtbx/langchain/tests/tst_grounding_stop_after_requested.py libtbx/langchain/tests/tst_h17_strip_executor.py libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py libtbx/langchain/tests/tst_hardcoded_cleanup.py libtbx/langchain/tests/tst_history_analysis.py libtbx/langchain/tests/tst_hypothesis_evaluator.py libtbx/langchain/tests/tst_initialize_plan_smoke.py libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py libtbx/langchain/tests/tst_integration.py libtbx/langchain/tests/tst_intent_classifier.py libtbx/langchain/tests/tst_langchain_tools.py libtbx/langchain/tests/tst_ligand_workflow_restart.py libtbx/langchain/tests/tst_llm_unavailable_notice.py libtbx/langchain/tests/tst_log_extractor.py libtbx/langchain/tests/tst_metric_patterns.py libtbx/langchain/tests/tst_metrics_analyzer.py libtbx/langchain/tests/tst_mtz_crosscheck.py libtbx/langchain/tests/tst_mtz_phases_session_blocking.py libtbx/langchain/tests/tst_n_bugs.py libtbx/langchain/tests/tst_new_programs.py libtbx/langchain/tests/tst_obs_labels_auto_fill.py libtbx/langchain/tests/tst_old_client_compat.py libtbx/langchain/tests/tst_optional_dep_resilience.py libtbx/langchain/tests/tst_pattern_manager.py libtbx/langchain/tests/tst_perceive_stop_checks.py libtbx/langchain/tests/tst_phase0_static_audit.py libtbx/langchain/tests/tst_phase1_contract_gaps.py libtbx/langchain/tests/tst_phase2_path_consistency.py libtbx/langchain/tests/tst_phase2b_activation.py libtbx/langchain/tests/tst_phase3_bug5.py libtbx/langchain/tests/tst_phase3_serialization_symmetry.py libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py libtbx/langchain/tests/tst_phase4_history_flags.py libtbx/langchain/tests/tst_phase5_error_classification.py libtbx/langchain/tests/tst_phase6_category_consumer.py libtbx/langchain/tests/tst_phase7_routing_simulation.py libtbx/langchain/tests/tst_phase8_command_building.py libtbx/langchain/tests/tst_phase9_llm_perturbation.py libtbx/langchain/tests/tst_phaser_multimodel.py libtbx/langchain/tests/tst_phil_namespace_cleaner.py libtbx/langchain/tests/tst_phil_validation.py libtbx/langchain/tests/tst_placement_skip_rebuild.py libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py libtbx/langchain/tests/tst_plan_generator.py libtbx/langchain/tests/tst_plan_lead_program_offer.py libtbx/langchain/tests/tst_plan_schema.py libtbx/langchain/tests/tst_planning_framework.py libtbx/langchain/tests/tst_portkey_embedding_model.py libtbx/langchain/tests/tst_predict_and_build_no_ncs.py libtbx/langchain/tests/tst_preprocessor_file_override.py libtbx/langchain/tests/tst_program_registration.py libtbx/langchain/tests/tst_program_requirements.py libtbx/langchain/tests/tst_protocol_version.py libtbx/langchain/tests/tst_provider_error_classification.py libtbx/langchain/tests/tst_provider_lock.py libtbx/langchain/tests/tst_raw_advice_scanner.py libtbx/langchain/tests/tst_reactive_deviation_hold.py libtbx/langchain/tests/tst_reasoning_command_divergence.py libtbx/langchain/tests/tst_rebuild_template_selection.py libtbx/langchain/tests/tst_refine_final_rfree.py libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py libtbx/langchain/tests/tst_resume_reopen_stages.py libtbx/langchain/tests/tst_rfree_flags_missing.py libtbx/langchain/tests/tst_rfree_generate_guard.py libtbx/langchain/tests/tst_rfree_lock_reconciliation.py libtbx/langchain/tests/tst_rfree_resolution_stop.py libtbx/langchain/tests/tst_safe_float_consolidation.py libtbx/langchain/tests/tst_sanity_checker.py libtbx/langchain/tests/tst_scenario_tracer.py libtbx/langchain/tests/tst_sequence_only_routing.py libtbx/langchain/tests/tst_session_directives.py libtbx/langchain/tests/tst_session_summary.py libtbx/langchain/tests/tst_session_tools.py libtbx/langchain/tests/tst_settings_list_coercion.py libtbx/langchain/tests/tst_shared_code_imports.py libtbx/langchain/tests/tst_silent_stop_abort_messages.py libtbx/langchain/tests/tst_simple_extractor_validation.py libtbx/langchain/tests/tst_skip_promotion.py libtbx/langchain/tests/tst_skip_to_program.py libtbx/langchain/tests/tst_solve_action_keywords.py libtbx/langchain/tests/tst_space_group_validation.py libtbx/langchain/tests/tst_spurious_stop_after_requested.py libtbx/langchain/tests/tst_standalone_consistency.py libtbx/langchain/tests/tst_state_serialization.py libtbx/langchain/tests/tst_step1f_single_emit.py libtbx/langchain/tests/tst_stop_condition_false_positive.py libtbx/langchain/tests/tst_stop_condition_fix.py libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py libtbx/langchain/tests/tst_stop_reason_codes.py libtbx/langchain/tests/tst_stop_reason_prompt.py libtbx/langchain/tests/tst_strategy_memory.py libtbx/langchain/tests/tst_structure_model.py libtbx/langchain/tests/tst_summary_display.py libtbx/langchain/tests/tst_supported_providers_single_source.py libtbx/langchain/tests/tst_template.py libtbx/langchain/tests/tst_thinking_agent.py libtbx/langchain/tests/tst_thinking_defense.py libtbx/langchain/tests/tst_transport.py libtbx/langchain/tests/tst_user_advice_filter.py libtbx/langchain/tests/tst_utils.py libtbx/langchain/tests/tst_v112_13_fixes.py libtbx/langchain/tests/tst_v120_providers.py libtbx/langchain/tests/tst_validate_file_overrides.py libtbx/langchain/tests/tst_validate_step_after_program_guard.py libtbx/langchain/tests/tst_validation_history.py libtbx/langchain/tests/tst_workflow_complete_stop.py libtbx/langchain/tests/tst_workflow_state.py libtbx/langchain/tests/tst_yaml_config.py libtbx/langchain/tests/tst_yaml_tools.py libtbx/langchain/tests/llm/ libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py libtbx/langchain/tests/llm/tst_c1_raw_authority.py libtbx/langchain/tests/llm/tst_directive_extraction.py libtbx/langchain/tests/llm/tst_framework_self.py libtbx/langchain/tests/llm/tst_planning.py libtbx/phil/ libtbx/phil/tst.py libtbx/phil/tst_experimental.py libtbx/phil/tst_interface.py libtbx/phil/tst_tokenizer.py libtbx/queuing_system_utils/ libtbx/queuing_system_utils/tst.py sent 3,984,941 bytes received 4,100 bytes 7,978,082.00 bytes/sec total size is 3,967,665 speedup is 0.99 building file list ... done mmtbx/atomic_environment_vectors/ mmtbx/atomic_environment_vectors/tst.py mmtbx/building/ mmtbx/building/tst_extend_sidechains.py mmtbx/building/tst_extend_sidechains_2.py mmtbx/building/ligands/ mmtbx/building/ligands/tst_00.py mmtbx/building/ligands/tst_00_mmtbx_building_ligands.map mmtbx/bulk_solvent/ mmtbx/bulk_solvent/tst_aniso_scaler.py mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py mmtbx/bulk_solvent/tst_flat_nonuniform.py mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py mmtbx/bulk_solvent/tst_mosaic.py mmtbx/bulk_solvent/tst_scaler.py mmtbx/chemical_components/ mmtbx/chemical_components/tst.py mmtbx/conformation_dependent_library/ mmtbx/conformation_dependent_library/tst_cdl.py mmtbx/conformation_dependent_library/tst_cdl_esd.py mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py mmtbx/conformation_dependent_library/tst_enol_peptide.py mmtbx/conformation_dependent_library/tst_hpdl.py mmtbx/conformation_dependent_library/tst_mcl_01.py mmtbx/conformation_dependent_library/tst_mcl_02.py mmtbx/conformation_dependent_library/tst_mcl_03.py mmtbx/conformation_dependent_library/tst_multi_residue_rna.py mmtbx/conformation_dependent_library/tst_mutli_residue.py mmtbx/conformation_dependent_library/tst_omega_cdl.py mmtbx/conformation_dependent_library/tst_pH_mechanism.py mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py mmtbx/conformation_dependent_library/tst_rdl.py mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py mmtbx/density_modification/ mmtbx/density_modification/tst_density_modification.py mmtbx/disorder/ mmtbx/disorder/tst.py mmtbx/disorder/tst_analyze_model.py mmtbx/disorder/tst_backbone.py mmtbx/dynamics/ mmtbx/dynamics/tst_cartesian_dynamics.py mmtbx/dynamics/tst_sa.py mmtbx/geometry/ mmtbx/geometry/tests/ mmtbx/geometry/tests/tst_altloc.py mmtbx/geometry/tests/tst_asa.py mmtbx/geometry/tests/tst_clash.py mmtbx/geometry/tests/tst_indexing.py mmtbx/geometry/tests/tst_shared_types.py mmtbx/geometry/tests/tst_sphere_surface_sampling.py mmtbx/geometry/tests/tst_topology.py mmtbx/geometry_restraints/ mmtbx/geometry_restraints/tst_c_beta_restraints.py mmtbx/geometry_restraints/tst_geo_file_parsing.py mmtbx/geometry_restraints/tst_manager.py mmtbx/geometry_restraints/tst_ramachandran.py mmtbx/geometry_restraints/tst_reference_coordinate.py mmtbx/geometry_restraints/tst_reference_coordinate2.py mmtbx/geometry_restraints/tst_replace_in_place.py mmtbx/geometry_restraints/tst_xtb_manager.py mmtbx/geometry_restraints/torsion_restraints/ mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py mmtbx/hydrogens/ mmtbx/hydrogens/tst.py mmtbx/hydrogens/tst_add_hydrogen.py mmtbx/hydrogens/tst_add_hydrogen_1.py mmtbx/hydrogens/tst_add_hydrogen_10.py mmtbx/hydrogens/tst_add_hydrogen_11.py mmtbx/hydrogens/tst_add_hydrogen_2.py mmtbx/hydrogens/tst_add_hydrogen_3.py mmtbx/hydrogens/tst_add_hydrogen_4.py mmtbx/hydrogens/tst_add_hydrogen_5.py mmtbx/hydrogens/tst_add_hydrogen_6.py mmtbx/hydrogens/tst_add_hydrogen_7.py mmtbx/hydrogens/tst_add_hydrogen_8.py mmtbx/hydrogens/tst_add_hydrogen_9.py mmtbx/hydrogens/tst_add_hydrogen_time.py mmtbx/hydrogens/tst_connectivity.py mmtbx/hydrogens/tst_const_dihedral.py mmtbx/hydrogens/tst_parameterization_1.py mmtbx/hydrogens/tst_parameterization_2.py mmtbx/hydrogens/tst_parameterization_3.py mmtbx/hydrogens/tst_parameterization_4.py mmtbx/hydrogens/tst_parameterization_5.py mmtbx/hydrogens/tst_parameterization_6.py mmtbx/hydrogens/tst_parameterization_7.py mmtbx/hydrogens/tst_parameterization_8.py mmtbx/hydrogens/tst_parameterization_9.py mmtbx/hydrogens/tst_riding_coefficients.py mmtbx/hydrogens/tst_riding_fd_1.py mmtbx/hydrogens/tst_riding_fd_2.py mmtbx/hydrogens/tst_riding_fd_3.py mmtbx/hydrogens/tst_riding_fd_4.py mmtbx/hydrogens/tst_riding_fd_5.py mmtbx/hydrogens/tst_riding_manager.py mmtbx/hydrogens/tst_riding_minimize.py mmtbx/hydrogens/tst_validate_H.py mmtbx/ias/ mmtbx/ias/tst_ias.py mmtbx/idealized_aa_residues/ mmtbx/idealized_aa_residues/tst.py mmtbx/ions/ mmtbx/ions/tst_environment.py mmtbx/ions/tst_geometries.py mmtbx/ions/tst_parameters.py mmtbx/ions/tst_pick_approx_zn.py mmtbx/ions/tst_pick_ca.py mmtbx/ions/tst_pick_ca_svm.py mmtbx/ions/tst_pick_k.py mmtbx/ions/tst_pick_mg.py mmtbx/ions/tst_pickle.py mmtbx/ions/tst_symmetry_axis.py mmtbx/ions/tst_utils.py mmtbx/ions/tst_validate_ca.py mmtbx/ions/tst_validate_mg.py mmtbx/ions/svm/ mmtbx/ions/svm/tst_classifier_01.py mmtbx/ions/svm/tst_classifier_02.py mmtbx/kinemage/ mmtbx/kinemage/tst_validation.py mmtbx/ligands/ mmtbx/ligands/tst_electron_scripting.py mmtbx/ligands/tst_ready_set_utils.py mmtbx/ligands/tst_xtal_screens.py mmtbx/maps/ mmtbx/maps/tst_composite_omit_map.py mmtbx/maps/tst_composite_omit_map_2.py mmtbx/maps/tst_composite_omit_map_3.py mmtbx/maps/tst_correlation.py mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py mmtbx/masks/ mmtbx/masks/tst_asu_mask.py mmtbx/masks/tst_mask.cpp mmtbx/masks/tst_masks.py mmtbx/max_lik/ mmtbx/max_lik/tst_max_lik.py mmtbx/max_lik/tst_maxlik.py mmtbx/monomer_library/ mmtbx/monomer_library/tst_all_cif_files.py mmtbx/monomer_library/tst_carbo_linking.py mmtbx/monomer_library/tst_chg.py mmtbx/monomer_library/tst_cif_triage.py mmtbx/monomer_library/tst_cif_types.py mmtbx/monomer_library/tst_correct_hydrogens.py mmtbx/monomer_library/tst_deuterium_terminii.py mmtbx/monomer_library/tst_geo_reduce_for_tardy.py mmtbx/monomer_library/tst_glyco_coordination.py mmtbx/monomer_library/tst_glyco_hand.py mmtbx/monomer_library/tst_idealized_aa.py mmtbx/monomer_library/tst_iron_sulfur_clusters.py mmtbx/monomer_library/tst_linking.py mmtbx/monomer_library/tst_metal_coordination.py mmtbx/monomer_library/tst_motif.py mmtbx/monomer_library/tst_neutron_distance.py mmtbx/monomer_library/tst_paral_geo.py mmtbx/monomer_library/tst_pdb_interpretation.py mmtbx/monomer_library/tst_pdb_interpretation_2.py mmtbx/monomer_library/tst_pdb_interpretation_3.py mmtbx/monomer_library/tst_pdb_interpretation_4.py mmtbx/monomer_library/tst_pdb_interpretation_5.py mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py mmtbx/monomer_library/tst_protein_interpretation.py mmtbx/monomer_library/tst_rna_dna_interpretation.py mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py mmtbx/monomer_library/tst_rotamer_utils.py mmtbx/monomer_library/tst_selection.py mmtbx/monomer_library/tst_server.py mmtbx/monomer_library/tst_superpose_ideal.py mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py mmtbx/monomer_library/tst_user_supplied_library.py mmtbx/nci/ mmtbx/nci/tst_hbond.py mmtbx/pair_interaction/ mmtbx/pair_interaction/tst_00.py mmtbx/pair_interaction/tst_01.py mmtbx/pair_interaction/tst_02.py mmtbx/pair_interaction/tst_03.py mmtbx/pair_interaction/tst_04.py mmtbx/pair_interaction/tst_05.py mmtbx/polygon/ mmtbx/polygon/tst.py mmtbx/polygon/tst_gui.py mmtbx/polygon/tst_polygon_data.py mmtbx/probe/ mmtbx/probe/tst_mmtbx_probe_ext.py mmtbx/probe/tst_probe.cpp mmtbx/real_space/ mmtbx/real_space/tst.py mmtbx/reduce/ mmtbx/reduce/tst_mmtbx_reduce_ext.py mmtbx/refinement/ mmtbx/refinement/tst_anomalous_scatterer_groups.py mmtbx/refinement/tst_fit_rotamers.py mmtbx/refinement/tst_group.py mmtbx/refinement/tst_group_2.py mmtbx/refinement/tst_misc.py mmtbx/refinement/tst_occupancy_selections.py mmtbx/refinement/tst_real_space_simple.py mmtbx/refinement/tst_refinement_flags.py mmtbx/refinement/tst_rigid_body.py mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py mmtbx/refinement/tst_select_best_starting_model.py mmtbx/refinement/real_space/ mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py mmtbx/refinement/real_space/tst_fit_residue_0.py mmtbx/refinement/real_space/tst_fit_residue_0H.py mmtbx/refinement/real_space/tst_fit_residue_1.py mmtbx/refinement/real_space/tst_fit_residue_1H.py mmtbx/refinement/real_space/tst_fit_residue_2.py mmtbx/refinement/real_space/tst_fit_residue_3.py mmtbx/refinement/real_space/tst_fit_residue_4.py mmtbx/refinement/real_space/tst_fit_residue_5.py mmtbx/refinement/real_space/tst_fit_residue_6.py mmtbx/refinement/real_space/tst_fit_residue_7.py mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py mmtbx/refinement/real_space/tst_fit_residues_1.py mmtbx/refinement/real_space/tst_fit_residues_1H.py mmtbx/refinement/real_space/tst_fit_residues_2.py mmtbx/refinement/real_space/tst_fit_residues_3.py mmtbx/refinement/real_space/tst_fit_residues_4.py mmtbx/refinement/real_space/tst_fit_residues_5.py mmtbx/refinement/real_space/tst_fit_residues_6.py mmtbx/refinement/real_space/tst_fit_residues_selection.py mmtbx/refinement/real_space/tst_fit_water.py mmtbx/refinement/real_space/tst_individual_sites_1.py mmtbx/refinement/real_space/tst_individual_sites_2.py mmtbx/refinement/real_space/tst_individual_sites_3.py mmtbx/refinement/real_space/tst_monitor.py mmtbx/refinement/real_space/tst_rigid_body.py mmtbx/refinement/real_space/tst_weight.py mmtbx/regression/tst_add_arrows_on_plot.py mmtbx/regression/tst_add_h_to_water.py mmtbx/regression/tst_adp_restraints.py mmtbx/regression/tst_alignment.py mmtbx/regression/tst_altloc_chain_break.py mmtbx/regression/tst_altloc_remediate.py mmtbx/regression/tst_angle.py mmtbx/regression/tst_anomalous_substructure.py mmtbx/regression/tst_apply_cif_restraints.py mmtbx/regression/tst_arginine_geometry.py mmtbx/regression/tst_cc_star.py mmtbx/regression/tst_chain_comparison.py mmtbx/regression/tst_chain_comparison_cif.py mmtbx/regression/tst_cif_as_mtz_wavelengths.py mmtbx/regression/tst_cis_trans_peptide_link.py mmtbx/regression/tst_clashes.py mmtbx/regression/tst_command_line_input.py mmtbx/regression/tst_domains_from_pae.py mmtbx/regression/tst_domains_from_pae_cif.py mmtbx/regression/tst_dynamics_cli.py mmtbx/regression/tst_examples.py mmtbx/regression/tst_find_ncs.py mmtbx/regression/tst_find_ss_structure.py mmtbx/regression/tst_find_ss_structure_cif.py mmtbx/regression/tst_flipping_his.py mmtbx/regression/tst_fmodel.py mmtbx/regression/tst_fmodel_2.py mmtbx/regression/tst_fmodel_and_dm.py mmtbx/regression/tst_fmodel_fd.py mmtbx/regression/tst_fmodel_misc.py mmtbx/regression/tst_fmodel_no_cryst1.py mmtbx/regression/tst_geo_min_restraints_phil.py mmtbx/regression/tst_geometry_minimization.py mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py mmtbx/regression/tst_holton_geometry_validation.py mmtbx/regression/tst_isomorphous_difference_misc.py mmtbx/regression/tst_ligand_ncs.py mmtbx/regression/tst_loop_closure.py mmtbx/regression/tst_lrv.py mmtbx/regression/tst_map_model_cc.py mmtbx/regression/tst_map_type_parser.py mmtbx/regression/tst_maps_misc.py mmtbx/regression/tst_metal_link_1.py mmtbx/regression/tst_minimize_chain.py mmtbx/regression/tst_ml_estimate.py mmtbx/regression/tst_mmtbx_refinement_wrappers.py mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py mmtbx/regression/tst_model_map.py mmtbx/regression/tst_model_vs_map.py mmtbx/regression/tst_model_vs_sequence.py mmtbx/regression/tst_models_to_from_chains.py mmtbx/regression/tst_msa.py mmtbx/regression/tst_mtz2map.py mmtbx/regression/tst_multi_residue_class.py mmtbx/regression/tst_ordered_solvent.py mmtbx/regression/tst_origin_ids.py mmtbx/regression/tst_pdbtools.py mmtbx/regression/tst_polder.py mmtbx/regression/tst_polder_1.py mmtbx/regression/tst_polder_2.py mmtbx/regression/tst_polder_3.py mmtbx/regression/tst_polder_4.py mmtbx/regression/tst_polder_box.py mmtbx/regression/tst_polder_ccs.py mmtbx/regression/tst_probe.py mmtbx/regression/tst_process_predicted_model.py mmtbx/regression/tst_process_predicted_model_cif.py mmtbx/regression/tst_prune_model.py mmtbx/regression/tst_psi_phi_extraction.py mmtbx/regression/tst_rank_scale_map.py mmtbx/regression/tst_rdkit_utils_fragmentation.py mmtbx/regression/tst_real_space_correlation.py mmtbx/regression/tst_reduce.py mmtbx/regression/tst_reduce_cryoem_resolution.py mmtbx/regression/tst_reduce_custom_bond.py mmtbx/regression/tst_reduce_switch.py mmtbx/regression/tst_reduce_timeout.py mmtbx/regression/tst_refine_anomalous_substructure.py mmtbx/regression/tst_regularize_from_pdb.py mmtbx/regression/tst_regularize_from_pdb_cif.py mmtbx/regression/tst_ribbons.py mmtbx/regression/tst_rigid_bond_test.py mmtbx/regression/tst_ringer.py mmtbx/regression/tst_sampled_model_density.py mmtbx/regression/tst_scattering_table.py mmtbx/regression/tst_scattering_type_registry.py mmtbx/regression/tst_schrodinger_interface.py mmtbx/regression/tst_sequence_validation.py mmtbx/regression/tst_sort_hetatms.py mmtbx/regression/tst_special_term_at_end.py mmtbx/regression/tst_ss_validation_long_chainids.py mmtbx/regression/tst_statistics_output.py mmtbx/regression/tst_superpose.py mmtbx/regression/tst_table_one.py mmtbx/regression/tst_utils.py mmtbx/regression/tst_validate_ligands.py mmtbx/regression/tst_validate_ligands_2.py mmtbx/regression/tst_validate_ligands_3.py mmtbx/regression/tst_validation_summary.py mmtbx/regression/discamb/ mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_1.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_2.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_3.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_4.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_5.py mmtbx/regression/discamb/tst_IAM_gradients_1.py mmtbx/regression/discamb/tst_fmodel_fd_discamb.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam_tyr.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_1.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_2.py mmtbx/regression/fix_cablam/ mmtbx/regression/fix_cablam/tst_basic_cl_operations.py mmtbx/regression/fix_cablam/tst_insertion_codes.py mmtbx/regression/fix_cablam/tst_one_resid_rotation.py mmtbx/regression/fix_cablam/tst_single_outliers_surroundings.py mmtbx/regression/model/ mmtbx/regression/model/tst_model.py mmtbx/regression/model/tst_model_2.py mmtbx/regression/model/tst_model_biomt_mtrix.py mmtbx/regression/model/tst_model_biomt_mtrix_2.py mmtbx/regression/model/tst_model_cart_ref_restraints.py mmtbx/regression/model/tst_model_dedeuterate.py mmtbx/regression/model/tst_model_get_vdw_radii.py mmtbx/regression/model/tst_model_merge.py mmtbx/regression/model/tst_model_mtrix.py mmtbx/regression/model/tst_model_ncs.py mmtbx/regression/model/tst_model_neutralize_scatterers.py mmtbx/regression/model/tst_model_pairs_within.py mmtbx/regression/model/tst_model_ramachandran.py mmtbx/regression/model/tst_model_remove_alternative_conformations.py mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py mmtbx/regression/model/tst_model_symmetry.py mmtbx/regression/model/tst_model_tors_ref_restraints.py mmtbx/regression/model/tst_model_utils_merge_models.py mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py mmtbx/regression/model_idealization/ mmtbx/regression/model_idealization/tst_ext_map_01.py mmtbx/regression/model_idealization/tst_ligands.py mmtbx/regression/model_idealization/tst_nomap_01.py mmtbx/regression/model_idealization/tst_nomap_02.py mmtbx/regression/model_idealization/tst_nomap_03.py mmtbx/regression/model_idealization/tst_nomap_04.py mmtbx/regression/model_idealization/tst_with_mtz.py mmtbx/regression/model_idealization/tst_withmap_01.py mmtbx/regression/model_idealization/tst_withmap_02.py mmtbx/regression/model_idealization/tst_withmap_03.py mmtbx/regression/model_idealization/tst_withmap_04.py mmtbx/regression/model_idealization/tst_withmap_05.py mmtbx/regression/model_idealization/tst_withmap_06.py mmtbx/regression/mtz/ mmtbx/regression/mtz/tst_xtriage_fmodel.mtz mmtbx/regression/ncs/ mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py mmtbx/regression/ncs/tst_ncs_restraints_group_list.py mmtbx/regression/ncs/tst_ncs_search.py mmtbx/regression/ncs/tst_ncs_search_flips.py mmtbx/regression/ncs/tst_ncs_utils.py mmtbx/regression/ncs/tst_restraints.py mmtbx/regression/pdb_interpretation/ mmtbx/regression/pdb_interpretation/tst_custom_nb_sym_excl.py mmtbx/regression/pdb_interpretation/tst_edits.py mmtbx/regression/pdb_interpretation/tst_edits_actions.py mmtbx/regression/pdb_interpretation/tst_tardy_geo.py mmtbx/regression/pdb_interpretation/tst_using_ncs_1.py mmtbx/regression/pdb_interpretation/tst_using_ncs_2.py mmtbx/regression/real_space_refine_chain/ mmtbx/regression/real_space_refine_chain/tst_00.py mmtbx/regression/real_space_refine_chain/tst_01.py mmtbx/regression/tls/ mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py mmtbx/regression/tls/tst_get_t_scheme.py mmtbx/regression/tls/tst_tls.py mmtbx/regression/tls/tst_tls_analysis.py mmtbx/regression/tls/tst_tls_as_xyz.py mmtbx/regression/tls/tst_tls_optimise_amplitudes.py mmtbx/regression/tls/tst_tls_refinement_fft.py mmtbx/regression/tls/tst_tls_utils.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py mmtbx/regression/tncs/ mmtbx/regression/tncs/tst_epsfac_and_radius.py mmtbx/regression/tncs/tst_fd.py mmtbx/regression/tncs/tst_moments.py mmtbx/regression/tncs/tst_pair.py mmtbx/ringer/ mmtbx/ringer/tst_em_rscc.py mmtbx/ringer/tst_emringer.py mmtbx/rotamer/ mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py mmtbx/rotamer/tst_rotamer_eval.py mmtbx/rsr/ mmtbx/rsr/tst.py mmtbx/scaling/ mmtbx/scaling/tst_absences.py mmtbx/scaling/tst_bayesian_estimator.py mmtbx/scaling/tst_massage_data.py mmtbx/scaling/tst_mean_f_rms_f.py mmtbx/scaling/tst_outlier.py mmtbx/scaling/tst_plan_sad_experiment.py mmtbx/scaling/tst_scaling.py mmtbx/scaling/tst_sigmaa.py mmtbx/scaling/tst_xtriage.py mmtbx/scaling/tst_xtriage_twin_analyses.py mmtbx/secondary_structure/ mmtbx/secondary_structure/tst.py mmtbx/secondary_structure/tst_insertion_codes.py mmtbx/secondary_structure/tst_segid.py mmtbx/secondary_structure/build/ mmtbx/secondary_structure/build/tst_1.py mmtbx/secondary_structure/build/tst_2.py mmtbx/secondary_structure/build/tst_3.py mmtbx/secondary_structure/build/tst_io.py mmtbx/secondary_structure/build/tst_ss_id_ncs.py mmtbx/utils/ mmtbx/utils/tst_switch_rotamers.py mmtbx/validation/ mmtbx/validation/regression/ mmtbx/validation/regression/tst_cablam.py mmtbx/validation/regression/tst_cablam_2.py mmtbx/validation/regression/tst_cbetadev.py mmtbx/validation/regression/tst_cbetadev_02.py mmtbx/validation/regression/tst_chiral_validation.py mmtbx/validation/regression/tst_clashscore.py mmtbx/validation/regression/tst_clashscore_2.py mmtbx/validation/regression/tst_do_flips_clashscore.py mmtbx/validation/regression/tst_experimental.py mmtbx/validation/regression/tst_find_region_max_value.py mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py mmtbx/validation/regression/tst_keep_hydrogens.py mmtbx/validation/regression/tst_model_properties.py mmtbx/validation/regression/tst_molprobity_1.py mmtbx/validation/regression/tst_molprobity_2.py mmtbx/validation/regression/tst_molprobity_3.py mmtbx/validation/regression/tst_molprobity_4.py mmtbx/validation/regression/tst_molprobity_5.py mmtbx/validation/regression/tst_molprobity_arguments.py mmtbx/validation/regression/tst_mp_geo.py mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py mmtbx/validation/regression/tst_mp_geo_endtoend.py mmtbx/validation/regression/tst_mp_validate_bonds.py mmtbx/validation/regression/tst_omegalyze.py mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py mmtbx/validation/regression/tst_rama_z_01.py mmtbx/validation/regression/tst_rama_z_02.py mmtbx/validation/regression/tst_ramalyze.py mmtbx/validation/regression/tst_ramalyze2.py mmtbx/validation/regression/tst_ramalyze_rare.py mmtbx/validation/regression/tst_restraints.py mmtbx/validation/regression/tst_rna_validate.py mmtbx/validation/regression/tst_rotalyze.py mmtbx/validation/regression/tst_suitename.py mmtbx/validation/regression/tst_symmetry_SS.py mmtbx/validation/regression/tst_undowser.py mmtbx/validation/regression/tst_undowser2.py mmtbx/validation/regression/tst_utils.py mmtbx/validation/regression/tst_waters.py mmtbx/wwpdb/ mmtbx/wwpdb/tst_rcsb_entry_request.py mmtbx/wwpdb/tst_rcsb_web_services.py sent 8,132,349 bytes received 8,802 bytes 16,282,302.00 bytes/sec total size is 8,099,269 speedup is 0.99 building file list ... done omptbx/ omptbx/tst.py sent 1,309 bytes received 38 bytes 2,694.00 bytes/sec total size is 1,175 speedup is 0.87 building file list ... done rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/tst_detector_model.py rstbx/cftbx/ rstbx/cftbx/tst_coordinate_frame_converter.py rstbx/diffraction/ rstbx/diffraction/tst_ewald_sphere.py rstbx/diffraction/tst_partial_derivatives.py rstbx/diffraction/tst_predict.py rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/tst_bragg_minimal.py rstbx/diffraction/fastbragg/tst_utils_clustering.py rstbx/dps_core/ rstbx/dps_core/tst_iotbx_converter.py rstbx/indexing/ rstbx/indexing/tst_auto_monoscan.py rstbx/indexing/tst_dataset1.py rstbx/simage/ rstbx/simage/tst.py rstbx/simulation/ rstbx/simulation/tst_xfel1_simple.py rstbx/sublattice_support/ rstbx/sublattice_support/tst_sublattice.py rstbx/viewer/ rstbx/viewer/tst.py sent 181,081 bytes received 311 bytes 362,784.00 bytes/sec total size is 179,407 speedup is 0.99 building file list ... done scitbx/array_family/ scitbx/array_family/tst_accessors.cpp scitbx/array_family/tst_af_1.cpp scitbx/array_family/tst_af_2.cpp scitbx/array_family/tst_af_3.cpp scitbx/array_family/tst_af_4.cpp scitbx/array_family/tst_af_5.cpp scitbx/array_family/tst_af_helpers.cpp scitbx/array_family/tst_mat3.cpp scitbx/array_family/tst_optional_copy.cpp scitbx/array_family/tst_rectangular_full_packed.cpp scitbx/array_family/tst_ref_matrix_facet.cpp scitbx/array_family/tst_sym_mat3.cpp scitbx/array_family/tst_unsigned_float_arithmetic.cpp scitbx/array_family/tst_vec3.cpp scitbx/array_family/boost_python/ scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py scitbx/array_family/boost_python/tst_flex.py scitbx/array_family/boost_python/tst_flex_argument_passing.py scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py scitbx/array_family/boost_python/tst_numpy_bridge.py scitbx/array_family/boost_python/tst_shared.py scitbx/array_family/boost_python/tst_smart_selection.py scitbx/dtmin/ scitbx/dtmin/regression/ scitbx/dtmin/regression/tst_dtmin_basic.py scitbx/dtmin/regression/tst_dtmin_booth.py scitbx/dtmin/regression/tst_dtmin_twisted.py scitbx/error/ scitbx/error/tst_error.cpp scitbx/error/tst_error.py scitbx/fftpack/ scitbx/fftpack/boost_python/ scitbx/fftpack/boost_python/tst_fftpack.py scitbx/fftpack/timing/ scitbx/fftpack/timing/tst3d.cpp scitbx/glmtbx/ scitbx/glmtbx/tests/ scitbx/glmtbx/tests/tst.py scitbx/graph/ scitbx/graph/tst_rigidity.py scitbx/graph/tst_tardy_tree.py scitbx/graph/tst_tardy_tree_find_paths.py scitbx/graph/tst_utils.py scitbx/graphics_utils/ scitbx/graphics_utils/tst.py scitbx/iso_surface/ scitbx/iso_surface/tst_iso_surface.m scitbx/iso_surface/tst_iso_surface.py scitbx/lbfgs/ scitbx/lbfgs/tst_curvatures.py scitbx/lbfgs/tst_ext.py scitbx/lbfgs/tst_func_free_line_search.py scitbx/lbfgs/tst_lbfgs.cpp scitbx/lbfgs/tst_lbfgs_fem.py scitbx/lbfgs/tst_mpi_split_evaluator.py scitbx/lbfgsb/ scitbx/lbfgsb/boost_python/ scitbx/lbfgsb/boost_python/tst_fit_cdf.py scitbx/lbfgsb/boost_python/tst_lbfgsb.py scitbx/linalg/ scitbx/linalg/tests/ scitbx/linalg/tests/tst_cholesky.py scitbx/linalg/tests/tst_eigensystem.py scitbx/linalg/tests/tst_lapack_dsyev.py scitbx/linalg/tests/tst_lapack_svd.py scitbx/linalg/tests/tst_matrix.py scitbx/linalg/tests/tst_svd.py scitbx/lstbx/ scitbx/lstbx/tests/ scitbx/lstbx/tests/tst_normal_equations.nb scitbx/lstbx/tests/tst_normal_equations.py scitbx/math/ scitbx/math/tst_2d_zernike.py scitbx/math/tst_bessel_zeros.py scitbx/math/tst_multivariate_moments.py scitbx/math/tst_so3_lie_algebra.py scitbx/math/tst_undirected_graph.py scitbx/math/tst_zernike.py scitbx/math/tst_zernike_mom.py scitbx/math/tests/ scitbx/math/tests/tst.cpp scitbx/math/tests/tst_angle_derivative.py scitbx/math/tests/tst_bessel.py scitbx/math/tests/tst_clustering.py scitbx/math/tests/tst_cubic_equation.py scitbx/math/tests/tst_curve_fitting.py scitbx/math/tests/tst_dmatrix.py scitbx/math/tests/tst_error_propagation_matrix_inverse.py scitbx/math/tests/tst_euler_angles.py scitbx/math/tests/tst_exp_functions.py scitbx/math/tests/tst_fit_peak.py scitbx/math/tests/tst_fit_quadratic_function.py scitbx/math/tests/tst_g_function.py scitbx/math/tests/tst_gaussian.py scitbx/math/tests/tst_gaussian_fit_1d_analytical.py scitbx/math/tests/tst_gcd.py scitbx/math/tests/tst_halton.py scitbx/math/tests/tst_line_search.py scitbx/math/tests/tst_math.py scitbx/math/tests/tst_minimum_covering_ellipsoid.py scitbx/math/tests/tst_orthonormal_basis.py scitbx/math/tests/tst_periodogram.py scitbx/math/tests/tst_quadrature.py scitbx/math/tests/tst_r3_rotation.py scitbx/math/tests/tst_resample.py scitbx/math/tests/tst_similarity_indices.py scitbx/math/tests/tst_superpose.py scitbx/math/tests/tst_tetrahedron.py scitbx/math/tests/tst_uniform_rotation_matrix.py scitbx/math/tests/tst_weighted_correlation.py scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky.cpp scitbx/matrix/tests/tst_givens.cpp scitbx/matrix/tests/tst_householder.cpp scitbx/matrix/tests/tst_householder.nb scitbx/matrix/tests/tst_householder.py scitbx/matrix/tests/tst_row_echelon.py scitbx/matrix/tests/tst_svd.cpp scitbx/matrix/tests/tst_svd.nb scitbx/matrix/tests/tst_svd_accuracy.nb scitbx/minpack/ scitbx/minpack/tst.py scitbx/python_utils/ scitbx/python_utils/tst_graph.py scitbx/python_utils/tst_random_transform.py scitbx/python_utils/tst_robust.py scitbx/random/ scitbx/random/tests/ scitbx/random/tests/tst_random.py scitbx/rigid_body/ scitbx/rigid_body/tst.py scitbx/rigid_body/essence/ scitbx/rigid_body/essence/tst_basic.py scitbx/rigid_body/essence/tst_energy_plots.py scitbx/rigid_body/essence/tst_tardy.py scitbx/rigid_body/proto/ scitbx/rigid_body/proto/tst_featherstone.py scitbx/rigid_body/proto/tst_free_motion.py scitbx/rigid_body/proto/tst_free_motion_hard.py scitbx/rigid_body/proto/tst_joint_lib.py scitbx/rigid_body/proto/tst_molecules.py scitbx/rigid_body/proto/tst_singular.py scitbx/rigid_body/proto/tst_spherical_refinement.py scitbx/serialization/ scitbx/serialization/tst_base_256.cpp scitbx/sparse/ scitbx/sparse/tests/ scitbx/sparse/tests/tst_lu_factorization.py scitbx/sparse/tests/tst_sparse.cpp scitbx/sparse/tests/tst_sparse.py scitbx/stl/ scitbx/stl/tst_map.py scitbx/stl/tst_set.py scitbx/stl/tst_vector.py scitbx/suffixtree/ scitbx/suffixtree/test/ scitbx/suffixtree/test/tst_single.py scitbx/tests/ scitbx/tests/tst_basic.csh scitbx/tests/tst_basic.py scitbx/tests/tst_cubicle_neighbors.py scitbx/tests/tst_genetic_algorithm_with_mp.py scitbx/tests/tst_minimizer_lbfgs_general.py scitbx/tests/tst_r3_utils.py scitbx/tests/tst_regular_grid_on_unit_sphere.py scitbx/tests/tst_smoothing.py scitbx/wigner/ scitbx/wigner/tst_wigner3j.py sent 1,124,754 bytes received 2,622 bytes 2,254,752.00 bytes/sec total size is 1,114,425 speedup is 0.99 building file list ... done sent 146 bytes received 12 bytes 316.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ab_initio/ smtbx/ab_initio/tests/ smtbx/ab_initio/tests/tst_ab_initio_ext.py smtbx/ab_initio/tests/tst_charge_flipping.py smtbx/absolute_structure/ smtbx/absolute_structure/tests/ smtbx/absolute_structure/tests/tst_absolute_structure.py smtbx/masks/ smtbx/masks/tests/ smtbx/masks/tests/tst_masks.py smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_constrained_structure.py smtbx/refinement/constraints/tests/tst_direction.py smtbx/refinement/constraints/tests/tst_disorder.py smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp smtbx/refinement/constraints/tests/tst_lbfgs.py smtbx/refinement/constraints/tests/tst_occupancies.py smtbx/refinement/constraints/tests/tst_reparametrisation.cpp smtbx/refinement/constraints/tests/tst_reparametrisation.py smtbx/refinement/constraints/tests/tst_rigid.py smtbx/refinement/constraints/tests/tst_same_group.py smtbx/refinement/constraints/tests/tst_special_position.cpp smtbx/refinement/restraints/ smtbx/refinement/restraints/tests/ smtbx/refinement/restraints/tests/tst_adp_restraints.py smtbx/refinement/restraints/tests/tst_manager.py smtbx/refinement/restraints/tests/tst_restraints.py smtbx/refinement/tests/ smtbx/refinement/tests/tst_least_squares.py smtbx/refinement/tests/tst_weighting_schemes.py smtbx/regression/ smtbx/regression/tst_commandline_anomrefine.py smtbx/regression/tst_commandline_refine.py smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/tests/ smtbx/structure_factors/direct/tests/tst_standard_xray.py smtbx/tests/ smtbx/tests/tst_utils.py sent 250,728 bytes received 519 bytes 502,494.00 bytes/sec total size is 248,243 speedup is 0.99 building file list ... done spotfinder/core_toolbox/ spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/tst_small_image.py sent 5,467 bytes received 37 bytes 11,008.00 bytes/sec total size is 5,074 speedup is 0.92 building file list ... done tbxx/ tbxx/tests/ tbxx/tests/tst_pretty_type_name.cpp sent 493 bytes received 41 bytes 1,068.00 bytes/sec total size is 323 speedup is 0.60 building file list ... done wxtbx/regression/ wxtbx/regression/tst_headless_construct.py wxtbx/regression/tst_imports.py wxtbx/regression/tst_process_control.py sent 6,436 bytes received 72 bytes 13,016.00 bytes/sec total size is 6,063 speedup is 0.93 building file list ... done xcif/ xcif/regression/ xcif/regression/tst_api_compat.py xcif/regression/tst_bindings.py xcif/regression/tst_example_parse.py xcif/regression/tst_example_tokenize.py xcif/regression/tst_gil_release.py xcif/regression/tst_iotbx_cif_reader_engine.py xcif/regression/tst_iotbx_cif_reader_parity.py xcif/regression/tst_memory.py xcif/regression/tst_non_strict_mode.py xcif/regression/tst_parse_verify.py xcif/regression/tst_pdb_coordinates.py xcif/regression/tst_pdb_sf.py xcif/regression/tst_quoted_string_delimiter.py xcif/regression/tst_roundtrip.py xcif/regression/tst_semicolon_field_strict.py xcif/regression/tst_string_interning.py xcif/regression/tst_utf8.py xcif/regression/cpp/ xcif/regression/cpp/tst_data_model.cpp xcif/regression/cpp/tst_error_handling.cpp xcif/regression/cpp/tst_infrastructure.cpp xcif/regression/cpp/tst_mapped_file.cpp xcif/regression/cpp/tst_non_strict_mode.cpp xcif/regression/cpp/tst_numeric.cpp xcif/regression/cpp/tst_quoted_string_delimiter.cpp xcif/regression/cpp/tst_semicolon_field_strict.cpp xcif/regression/cpp/tst_string_view.cpp xcif/regression/cpp/tst_thread_safety.cpp xcif/regression/cpp/tst_tokenizer.cpp sent 202,848 bytes received 557 bytes 406,810.00 bytes/sec total size is 200,767 speedup is 0.99 building file list ... done ./ annlib_adaptbx/ annlib_adaptbx/tests/ annlib_adaptbx/tests/data.txt annlib_adaptbx/tests/query.txt cctbx/maptbx/bcr/tables/ 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cctbx/maptbx/bcr/tables/F_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe_electron.json.gz cctbx/maptbx/bcr/tables/Fe_wk1995.json.gz cctbx/maptbx/bcr/tables/H1-_wk1995.json.gz cctbx/maptbx/bcr/tables/H_electron.json.gz cctbx/maptbx/bcr/tables/H_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg_electron.json.gz cctbx/maptbx/bcr/tables/Hg_wk1995.json.gz cctbx/maptbx/bcr/tables/I1-_wk1995.json.gz cctbx/maptbx/bcr/tables/I_electron.json.gz cctbx/maptbx/bcr/tables/I_wk1995.json.gz cctbx/maptbx/bcr/tables/K1+_wk1995.json.gz cctbx/maptbx/bcr/tables/K_electron.json.gz cctbx/maptbx/bcr/tables/K_wk1995.json.gz cctbx/maptbx/bcr/tables/Li1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Li_electron.json.gz cctbx/maptbx/bcr/tables/Li_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg_electron.json.gz 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fable/test/valid/common_equivalence_simple_6.f fable/test/valid/common_name_clash.f fable/test/valid/common_name_clash_2.f fable/test/valid/common_name_clash_3.f fable/test/valid/common_save_members.f fable/test/valid/common_variants.f fable/test/valid/commonymous.f fable/test/valid/const_analysis_1.f fable/test/valid/const_analysis_2.f fable/test/valid/const_expressions.f fable/test/valid/const_expressions_2.f fable/test/valid/conv_recipe.f fable/test/valid/cycle_exit.f fable/test/valid/data_01.f fable/test/valid/data_02.f fable/test/valid/data_03.f fable/test/valid/data_04.f fable/test/valid/data_05.f fable/test/valid/data_06.f fable/test/valid/data_07.f fable/test/valid/data_08.f fable/test/valid/data_09.f fable/test/valid/data_10.f fable/test/valid/data_11.f fable/test/valid/data_12.f fable/test/valid/data_13.f fable/test/valid/data_14.f fable/test/valid/data_15.f fable/test/valid/data_16.f fable/test/valid/data_17.f fable/test/valid/data_18.f fable/test/valid/data_19.f 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fable/test/valid/dynamic_parameters_3.f fable/test/valid/dynamic_parameters_4.f fable/test/valid/dynamic_parameters_5.f fable/test/valid/entry_fun_1.f fable/test/valid/entry_fun_2.f fable/test/valid/entry_sub_1.f fable/test/valid/entry_sub_2.f fable/test/valid/equivalence_01.f fable/test/valid/equivalence_02.f fable/test/valid/equivalence_03.f fable/test/valid/equivalence_04.f fable/test/valid/equivalence_05.f fable/test/valid/equivalence_06.f fable/test/valid/equivalence_07.f fable/test/valid/equivalence_08.f fable/test/valid/equivalence_09.f fable/test/valid/equivalence_10.f fable/test/valid/equivalence_11.f fable/test/valid/equivalence_12.f fable/test/valid/equivalence_data.f fable/test/valid/equivalence_mixed.f fable/test/valid/equivalence_repeated.f fable/test/valid/external_arg_function.f fable/test/valid/external_arg_layers.f fable/test/valid/external_arg_non_const.f fable/test/valid/external_arg_pass_call.f fable/test/valid/external_arg_simple.f fable/test/valid/external_arg_subroutine.f fable/test/valid/f90_ne_token.f fable/test/valid/file_names_and_expected_cout fable/test/valid/flush_external.f fable/test/valid/flush_intrinsic.f fable/test/valid/format_escape.f fable/test/valid/format_nested.f fable/test/valid/format_quote_syndrome.f fable/test/valid/format_str_blank_str.f fable/test/valid/format_used_twice.f fable/test/valid/formats.f fable/test/valid/function_calls_with_its_name_as_arg.f fable/test/valid/function_data_type_in_body.f fable/test/valid/function_no_arg.f fable/test/valid/function_no_arg_with_common_in_expression.f fable/test/valid/function_two_returns_1.f fable/test/valid/function_two_returns_2.f fable/test/valid/function_write.f fable/test/valid/goto_computed.f fable/test/valid/goto_forms.f fable/test/valid/goto_last_do.f fable/test/valid/goto_spaghetti.f fable/test/valid/goto_target_before_else.f fable/test/valid/hexadecimal.f fable/test/valid/hollerith.f fable/test/valid/identifier_prefix.f 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fable/test/valid/mod_integers.f fable/test/valid/open_chain.f fable/test/valid/open_write_read.f fable/test/valid/open_write_read_2.f fable/test/valid/ops.f fable/test/valid/parameter_for_arg_and_cmn_dim.f fable/test/valid/parameter_n.f fable/test/valid/parameter_save.f fable/test/valid/parameter_save_common.f fable/test/valid/parameters_2.f fable/test/valid/parameters_recursive.f fable/test/valid/parameters_recursive_2.f fable/test/valid/passing_arrays.f fable/test/valid/passing_arrays_2.f fable/test/valid/passing_strings.f fable/test/valid/power.f fable/test/valid/power_2.f fable/test/valid/print.f fable/test/valid/read_end.f fable/test/valid/read_end_empty.f fable/test/valid/read_end_err.f fable/test/valid/read_end_err_star_double.f fable/test/valid/read_err.f fable/test/valid/read_fmt_double.f fable/test/valid/read_fmt_past_end_of_line.f fable/test/valid/read_fmt_real.f fable/test/valid/read_fmt_slash.f fable/test/valid/read_fmt_string.f fable/test/valid/read_fmt_x.f fable/test/valid/read_format.f fable/test/valid/read_implied_do_1.f fable/test/valid/read_iostat_end_err_1.f fable/test/valid/read_iostat_end_err_2.f fable/test/valid/read_iostat_from_file.f fable/test/valid/read_iostat_from_string.f fable/test/valid/read_lines.f fable/test/valid/read_rec_iostat.f fable/test/valid/read_star.f fable/test/valid/read_star_empty.f fable/test/valid/read_star_integer.f fable/test/valid/read_star_print_star.f fable/test/valid/read_test_1.f fable/test/valid/read_test_1_iostat.f fable/test/valid/read_test_2.f fable/test/valid/read_test_3.f fable/test/valid/read_unformatted_str_arr.f fable/test/valid/real_array_sum.f fable/test/valid/recursive_subroutine.f fable/test/valid/rewind.f fable/test/valid/save_0.f fable/test/valid/save_1.f fable/test/valid/save_2.f fable/test/valid/save_3.f fable/test/valid/save_equivalence_1.f fable/test/valid/scopes_1.f fable/test/valid/scopes_2.f fable/test/valid/scopes_3.f fable/test/valid/scopes_4.f fable/test/valid/sf.f fable/test/valid/sign.f fable/test/valid/stop_bare.f fable/test/valid/stop_integer.f fable/test/valid/stop_string.f fable/test/valid/string_array.f fable/test/valid/string_array_declarations.f fable/test/valid/string_assign_to_slice.f fable/test/valid/string_common_dims.f fable/test/valid/string_compare.f fable/test/valid/string_concat.f fable/test/valid/string_spanning_continuation_lines.f fable/test/valid/string_sub_array_passing.f fable/test/valid/strings_size_dim.f fable/test/valid/strings_size_dim_data.f fable/test/valid/sub_fun_1.f fable/test/valid/sub_fun_3.f fable/test/valid/sub_nums_size_capacity.f fable/test/valid/sub_star.f fable/test/valid/subroutine_1.f fable/test/valid/subroutine_2.f fable/test/valid/subroutine_3.f fable/test/valid/subroutine_4.f fable/test/valid/subroutine_5.f fable/test/valid/subroutine_6.f fable/test/valid/subroutine_7.f fable/test/valid/subroutine_8.f fable/test/valid/subroutine_9.f fable/test/valid/subroutine_write_iunit.f fable/test/valid/subroutine_zero.f fable/test/valid/tab_syndrome.f fable/test/valid/triple_3d.f fable/test/valid/triple_3d_common.f fable/test/valid/unformatted_experiments.f fable/test/valid/unused_arg_implicit_none.f fable/test/valid/unused_args.f fable/test/valid/using_intrinsics.f fable/test/valid/write_1.f fable/test/valid/write_err.f fable/test/valid/write_extra_parentheses.f fable/test/valid/write_fmt_double.f fable/test/valid/write_format.f fable/test/valid/write_format_with_colon.f fable/test/valid/write_implied_do_1.f fable/test/valid/write_implied_do_2.f fable/test/valid/write_implied_do_3.f fable/test/valid/write_implied_do_4.f fable/test/valid/write_implied_do_5.f fable/test/valid/write_internal_file.f fable/test/valid/write_internal_file_2.f fable/test/valid/write_internal_file_3.f fable/test/valid/write_internal_file_4.f fable/test/valid/write_pow.f fable/test/valid/write_read_end_err_implied_do.f fable/test/valid/write_read_unformatted.f fable/test/valid/write_star.f fable/test/valid/write_star_real_star_4.f fable/test/valid/write_star_real_star_8.f iotbx/bioinformatics/test/alignment.pir iotbx/bioinformatics/test/ebi_blast.xml.gz iotbx/bioinformatics/test/ncbi_blast.xml.gz iotbx/ccp4_map/ccp4_20_21_22_to_30_40_50.ccp4 iotbx/examples/pdb_truncate_to_ala/__init__.py iotbx/examples/pdb_truncate_to_ala/crambin_pieces.pdb iotbx/examples/pdb_truncate_to_ala/resname_mix.pdb iotbx/examples/pdb_truncate_to_ala/tutorial.txt iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py iotbx/examples/pdb_truncate_to_ala/v2_simple.py iotbx/examples/pdb_truncate_to_ala/v3_better.py iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py iotbx/regression/data/ iotbx/regression/data/1yjp.pdb iotbx/regression/data/2ERL.pdb iotbx/regression/data/D7.ccp4 iotbx/regression/data/big_cube_model.cif iotbx/regression/data/big_cube_model.pdb iotbx/regression/data/cu3182Isup2.hkl iotbx/regression/data/cu3182sup1.cif iotbx/regression/data/insulin_unmerged_cutted_from_ccp4.mtz iotbx/regression/data/mmma.ccp4 iotbx/regression/data/mmmab.ccp4 iotbx/regression/data/mmmb.ccp4 iotbx/regression/data/non_zero_origin_map.ccp4 iotbx/regression/data/non_zero_origin_model.cif iotbx/regression/data/non_zero_origin_model.pdb iotbx/regression/data/non_zero_origin_model_split.cif iotbx/regression/data/non_zero_origin_model_split.pdb iotbx/regression/data/non_zero_origin_ncs_model.cif iotbx/regression/data/non_zero_origin_ncs_model.pdb iotbx/regression/data/non_zero_origin_ncs_spec.ncs_spec iotbx/regression/data/pdb1zff.ent iotbx/regression/data/phaser_1.mtz iotbx/regression/data/shelx.ins iotbx/regression/secondary_structure/1ubf_cutted.pdb iotbx/regression/secondary_structure/3jd6_noh.pdb iotbx/regression/secondary_structure/4a7h_chainC.pdb iotbx/regression/secondary_structure/5a63_chainBp.pdb iotbx/regression/secondary_structure/5a63_chainCp.pdb iotbx/xds/tests/INTEGRATE.HKL iotbx/xds/tests/NEW_XPARM.XDS iotbx/xds/tests/XDS.INP iotbx/xds/tests/XDS_2.INP iotbx/xds/tests/XPARM.XDS libtbx/citations.params mmtbx/regression/pdbs/ mmtbx/regression/pdbs/1ucs_cutted_xyz_rounded.pdb mmtbx/regression/pdbs/1yjp_h.pdb mmtbx/regression/pdbs/7n2l.pdb mmtbx/regression/pdbs/AF_json_v3.cif mmtbx/regression/pdbs/AF_json_v3.pdb mmtbx/regression/pdbs/Fe_1brf_snip_reduced.pdb mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.cif mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.pdb mmtbx/regression/pdbs/ligand_before_prot.pdb mmtbx/regression/pdbs/one_chain_ligand_water.pdb mmtbx/regression/pdbs/p9.pdb mmtbx/regression/pdbs/pae.pdb mmtbx/regression/pdbs/pae_model.cif mmtbx/regression/pdbs/pae_model.pdb mmtbx/regression/pdbs/test1.cif mmtbx/regression/pdbs/two_chains.pdb mmtbx/regression/pdbs/two_chains_ligand_water.pdb rstbx/indexing/results2.dat rstbx/indexing/si_brief.dat rstbx/indexing/si_synthetic.dat scitbx/array_family/boost_python/regression_test.py scitbx/tests/__init__.py scitbx/tests/differential_evolution.py scitbx/tests/direct_search_simulated_annealing.py scitbx/tests/golden_section_search.py scitbx/tests/simplex.py smtbx/regression/test_data/ smtbx/regression/test_data/sucrose_p1.res smtbx/regression/test_data/thpp.cif smtbx/regression/test_data/thpp.hkl smtbx/regression/test_data/thpp.ins sent 85,638,484 bytes received 11,367 bytes 171,299,702.00 bytes/sec total size is 85,672,474 speedup is 1.00 make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' dh_install -p libcctbx0 usr/lib/powerpc64le-linux-gnu/lib*.so.* install -m0755 -d debian/libcctbx0//usr/lib/powerpc64le-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/powerpc64le-linux-gnu/libann_adaptor.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libann_adaptor.so.0.0.1 debian/tmp/usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so.0.0.1 debian/tmp/usr/lib/powerpc64le-linux-gnu/libcbf-private.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libcbf-private.so.0.0.1 debian/tmp/usr/lib/powerpc64le-linux-gnu/libccp4io.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libccp4io.so.0.0.1 debian/tmp/usr/lib/powerpc64le-linux-gnu/libcctbx.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libcctbx.so.0.0.1 debian/tmp/usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/tmp/usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/tmp/usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so.0.0.1 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debian/tmp/usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so.0.0.1 debian/tmp/usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/tmp/usr/lib/powerpc64le-linux-gnu/libspotfinder.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libspotfinder.so.0.0.1 debian/tmp/usr/lib/powerpc64le-linux-gnu/libxcif.so.0 debian/tmp/usr/lib/powerpc64le-linux-gnu/libxcif.so.0.0.1 debian/libcctbx0//usr/lib/powerpc64le-linux-gnu/ dh_install -p libcctbx-dev usr/include/ install -m0755 -d debian/libcctbx-dev//usr cp --reflink=auto -a debian/tmp/usr/include/ debian/libcctbx-dev//usr/ dh_install -p libcctbx-dev usr/lib/powerpc64le-linux-gnu/lib*.so install -m0755 -d debian/libcctbx-dev//usr/lib/powerpc64le-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/powerpc64le-linux-gnu/libann_adaptor.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libcbf-private.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libccp4io.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libcctbx.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libomptbx.so debian/tmp/usr/lib/powerpc64le-linux-gnu/librstbx.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libspotfinder.so debian/tmp/usr/lib/powerpc64le-linux-gnu/libxcif.so debian/libcctbx-dev//usr/lib/powerpc64le-linux-gnu/ dh_install -p python3-cctbx usr/bin install -m0755 -d debian/python3-cctbx//usr cp --reflink=auto -a debian/tmp/usr/bin debian/python3-cctbx//usr/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// dh_install -p python3-cctbx usr/lib/cctbx install -m0755 -d debian/python3-cctbx//usr/lib cp --reflink=auto -a debian/tmp/usr/lib/cctbx debian/python3-cctbx//usr/lib/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// dh_install -p python3-cctbx usr/lib/python* install -m0755 -d debian/python3-cctbx//usr/lib cp --reflink=auto -a debian/tmp/usr/lib/python3.14 debian/python3-cctbx//usr/lib/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// rm debian/python3-cctbx/usr/lib/python3*/dist-packages/boost/__init__.py make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/copyright debian/libcctbx0/usr/share/doc/libcctbx0/copyright install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/copyright debian/libcctbx-dev/usr/share/doc/libcctbx-dev/copyright install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/copyright debian/python3-cctbx/usr/share/doc/python3-cctbx/copyright dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/.debhelper/generated/python3-cctbx/dh_installchangelogs.dch.trimmed debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog.Debian install -p -m0644 debian/.debhelper/generated/python3-cctbx/dh_installchangelogs.dch.binnmu debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog.Debian.ppc64el install -p -m0644 ./CHANGELOG.rst debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/.debhelper/generated/libcctbx0/dh_installchangelogs.dch.trimmed debian/libcctbx0/usr/share/doc/libcctbx0/changelog.Debian install -p -m0644 debian/.debhelper/generated/libcctbx0/dh_installchangelogs.dch.binnmu debian/libcctbx0/usr/share/doc/libcctbx0/changelog.Debian.ppc64el install -p -m0644 ./CHANGELOG.rst debian/libcctbx0/usr/share/doc/libcctbx0/changelog install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/.debhelper/generated/libcctbx-dev/dh_installchangelogs.dch.trimmed debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog.Debian install -p -m0644 debian/.debhelper/generated/libcctbx-dev/dh_installchangelogs.dch.binnmu debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog.Debian.ppc64el install -p -m0644 ./CHANGELOG.rst debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:87: version: 7.20260623 D: dh_python3 dh_python3:88: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:89: options: DHPythonOptions(O=['--buildsystem=pybuild'], accept_upstream_versions=False, arch=True, clean_dbg_pkg=True, compile_all=False, depends=[], depends_section=[], guess_deps=True, ignore_shebangs=False, no_ext_rename=False, no_package=[], no_shebang_rewrite=False, package=[], private_dir=None, recommends=[], recommends_section=[], regexpr=[], remaining_packages=False, requires=[], shebang=None, skip_private=False, suggests=[], suggests_section=[], verbose=True, vrange=None, write_log=False) D: dh_python3 dh_python3:90: supported Python versions: 3.14 (default=3.14) D: dh_python3 debhelper:219: skipping package libcctbx0 (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:219: skipping package libcctbx-dev (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:229: source=cctbx, binary packages=['python3-cctbx'] D: dh_python3 dh_python3:117: processing package python3-cctbx... D: dh_python3 fs:60: moving files from debian/python3-cctbx/usr/lib/python3.14/dist-packages to debian/python3-cctbx/usr/lib/python3/dist-packages/ D: dh_python3 tools:297: invoking: /usr/bin/python3.14 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:507: renaming mmtbx_tls_decompose_ext.so to mmtbx_tls_decompose_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_ncs_cartesian_restraints_ext.so to mmtbx_ncs_cartesian_restraints_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_masks_ext.so to cctbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_scalepack_ext.so to iotbx_scalepack_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_clustering_algorithm_ext.so to boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_cif_ext.so to iotbx_cif_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_maximum_clique_ext.so to boost_adaptbx_graph_maximum_clique_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_ncs_ext.so to mmtbx_ncs_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_stl_map_ext.so to smtbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_python_meta_ext.so to boost_python_meta_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_translation_search_ext.so to cctbx_translation_search_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_ab_initio_ext.so to smtbx_ab_initio_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_french_wilson_ext.so to cctbx_french_wilson_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_graphics_utils_ext.so to scitbx_graphics_utils_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_multipolar_ext.so to cctbx_multipolar_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_stl_vector_ext.so to scitbx_stl_vector_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_gl_ext.so to gltbx_gl_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_chemical_elements_ext.so to cctbx_eltbx_chemical_elements_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_fp_fdp_ext.so to cctbx_eltbx_fp_fdp_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_ext.so to dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming regression_test_ext.so to regression_test_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming ccp4io_adaptbx_ext.so to ccp4io_adaptbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_suffixtree_shared_ext.so to scitbx_suffixtree_shared_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_python_streambuf_test_ext.so to boost_adaptbx_python_streambuf_test_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_boost_thread_test_ext.so to boost_adaptbx_boost_thread_test_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_geometry_ext.so to cctbx_geometry_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_masks_ext.so to mmtbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_lbfgs_ext.so to scitbx_lbfgs_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_math_ext.so to scitbx_math_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_python_hybrid_times_ext.so to boost_python_hybrid_times_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_refinement_constraints_ext.so to smtbx_refinement_constraints_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming omptbx_ext.so to omptbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_dssp_ext.so to mmtbx_dssp_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cbflib_ext.so to cbflib_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_dynamics_ext.so to mmtbx_dynamics_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_xray_observations_ext.so to cctbx_xray_observations_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_masking_ext.so to dxtbx_masking_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_cubicle_neighbors_ext.so to scitbx_cubicle_neighbors_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_quadrics_ext.so to gltbx_quadrics_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming spotfinder_hough_ext.so to spotfinder_hough_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_integration_ext.so to rstbx_integration_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming spotfinder_distltbx_ext.so to spotfinder_distltbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_rational_ext.so to boost_rational_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_stl_map_ext.so to scitbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_tls_ext.so to mmtbx_tls_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming annlib_ext.so to annlib_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming spotfinder_array_family_flex_ext.so to spotfinder_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_format_image_ext.so to dxtbx_format_image_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_covariance_ext.so to cctbx_covariance_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_xray_scattering_ext.so to cctbx_eltbx_xray_scattering_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_pdb_ext.so to iotbx_pdb_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_array_family_shared_ext.so to scitbx_array_family_shared_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_primitive_ext.so to mmtbx_geometry_primitive_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_simage_ext.so to rstbx_simage_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_fonts_ext.so to gltbx_fonts_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_geometry_restraints_ext.so to cctbx_geometry_restraints_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_attenuation_coefficient_ext.so to cctbx_eltbx_attenuation_coefficient_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_utils_ext.so to mmtbx_utils_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_wildcard_ext.so to iotbx_wildcard_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_covalent_radii_ext.so to cctbx_eltbx_covalent_radii_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_random_ext.so to scitbx_random_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_maptbx_ext.so to cctbx_maptbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_tls_utils_ext.so to mmtbx_tls_utils_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_diffraction_fastbragg_ext.so to rstbx_diffraction_fastbragg_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_reduce_ext.so to mmtbx_reduce_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_structure_factors_direct_ext.so to smtbx_structure_factors_direct_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_xplor_ext.so to iotbx_xplor_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_icsd_radii_ext.so to cctbx_eltbx_icsd_radii_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_max_lik_ext.so to mmtbx_max_lik_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming spotfinder_dxtbx_ext.so to spotfinder_dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_bulk_solvent_ext.so to mmtbx_bulk_solvent_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_ext.so to rstbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_dmtbx_ext.so to cctbx_dmtbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_flumpy.so to dxtbx_flumpy.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_dtrek_ext.so to iotbx_dtrek_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_hydrogens_ext.so to mmtbx_hydrogens_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_connected_component_algorithm_ext.so to boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_maptbx_bcr_bcr_ext.so to cctbx_maptbx_bcr_bcr_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_glu_ext.so to gltbx_glu_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_tls_optimise_amplitudes_ext.so to mmtbx_tls_optimise_amplitudes_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_shared_types_ext.so to mmtbx_geometry_shared_types_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_henke_ext.so to cctbx_eltbx_henke_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_indexing_api_ext.so to rstbx_indexing_api_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_miller_ext.so to cctbx_miller_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_rigid_body_ext.so to scitbx_rigid_body_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_rsr_ext.so to mmtbx_rsr_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_graph_structure_comparison_ext.so to boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_symmetry_constraints_ext.so to rstbx_symmetry_constraints_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_detectors_bruker_ext.so to iotbx_detectors_bruker_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_bandpass_ext.so to rstbx_bandpass_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_refinement_least_squares_ext.so to smtbx_refinement_least_squares_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_iso_surface_ext.so to scitbx_iso_surface_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_sgtbx_asu_ext.so to cctbx_sgtbx_asu_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_math_ext.so to cctbx_math_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_pair_interaction_ext.so to mmtbx_pair_interaction_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_linalg_ext.so to scitbx_linalg_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_validation_ramachandran_ext.so to mmtbx_validation_ramachandran_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_anharmonic_ext.so to cctbx_anharmonic_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_array_family_ext.so to smtbx_array_family_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_crystal_ext.so to cctbx_crystal_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_sparse_ext.so to scitbx_sparse_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_uctbx_ext.so to cctbx_uctbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_lbfgsb_ext.so to scitbx_lbfgsb_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming fable_ext.so to fable_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_xray_ext.so to cctbx_xray_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_den_restraints_ext.so to mmtbx_den_restraints_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_scaling_ext.so to mmtbx_scaling_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_min_cut_max_flow_ext.so to boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_adp_restraints_ext.so to cctbx_adp_restraints_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_emma_ext.so to cctbx_emma_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_ext.so to boost_adaptbx_graph_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_symmetry_search_ext.so to cctbx_symmetry_search_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_clash_ext.so to mmtbx_geometry_clash_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_asymmetric_map_ext.so to cctbx_asymmetric_map_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_simulation_ext.so to rstbx_simulation_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_imageset_ext.so to dxtbx_imageset_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_tuple_ext.so to boost_tuple_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_secondary_structure_ext.so to mmtbx_secondary_structure_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_ramachandran_restraints_ext.so to mmtbx_ramachandran_restraints_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_statistics_ext.so to cctbx_statistics_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_neutron_ext.so to cctbx_eltbx_neutron_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_shelx_ext.so to iotbx_shelx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_stl_set_ext.so to scitbx_stl_set_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming std_pair_ext.so to std_pair_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_format_nexus_ext.so to dxtbx_format_nexus_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_ccp4_map_ext.so to iotbx_ccp4_map_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming determine_unit_cell_ext.so to determine_unit_cell_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_bpcx_detector_model_ext.so to rstbx_bpcx_detector_model_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_sasaki_ext.so to cctbx_eltbx_sasaki_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_pdb_hierarchy_ext.so to iotbx_pdb_hierarchy_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_reference_coordinate_ext.so to mmtbx_reference_coordinate_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_sphere_surface_sampling_ext.so to mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_utility_ext.so to boost_adaptbx_graph_utility_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cma_es_ext.so to cma_es_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_breadth_first_search_ext.so to boost_adaptbx_graph_breadth_first_search_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming dxtbx_model_ext.so to dxtbx_model_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_rotamer_fit_ext.so to mmtbx_rotamer_fit_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_tiny_pse_ext.so to cctbx_eltbx_tiny_pse_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_minpack_ext.so to scitbx_minpack_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_asa_ext.so to mmtbx_geometry_asa_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_building_loop_closure_ext.so to mmtbx_building_loop_closure_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_lstbx_normal_equations_ext.so to scitbx_lstbx_normal_equations_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_merging_ext.so to cctbx_merging_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_r3_utils_ext.so to scitbx_r3_utils_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_mtz_ext.so to iotbx_mtz_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_sgtbx_ext.so to cctbx_sgtbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_glmtbx_ext.so to scitbx_glmtbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_mosaic_ext.so to mmtbx_mosaic_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_suffixtree_single_ext.so to scitbx_suffixtree_single_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming rstbx_array_family_flex_ext.so to rstbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_fftpack_ext.so to scitbx_fftpack_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_dsn6_map_ext.so to iotbx_dsn6_map_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_f_model_ext.so to mmtbx_f_model_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming xcif_ext.so to xcif_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_optional_ext.so to boost_optional_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_util_ext.so to gltbx_util_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_array_family_flex_ext.so to scitbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_probe_ext.so to mmtbx_probe_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_eltbx_wavelengths_ext.so to cctbx_eltbx_wavelengths_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming smtbx_refinement_restraints_ext.so to smtbx_refinement_restraints_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming boost_adaptbx_graph_metric_ext.so to boost_adaptbx_graph_metric_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_alignment_ext.so to mmtbx_alignment_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_adptbx_ext.so to cctbx_adptbx_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming iotbx_detectors_ext.so to iotbx_detectors_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming mmtbx_geometry_indexing_ext.so to mmtbx_geometry_indexing_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming scitbx_wigner_ext.so to scitbx_wigner_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_orientation_ext.so to cctbx_orientation_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming gltbx_viewer_utils_ext.so to gltbx_viewer_utils_ext.cpython-314-powerpc64le-linux-gnu.so I: dh_python3 fs:507: renaming cctbx_array_family_flex_ext.so to cctbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.anom_refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.quantum_interface): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.comparama): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_ends_with): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_pdb_mmcif_problems): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.brehm_diederichs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_modules): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_lib_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.debugging.riding): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.patterson_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.apply_ncs_to_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_number_of_processors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sisa): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.sweep_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/annlib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.unicode_examples): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_all_on_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.make_install_HKLviewer_ChimeraX): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.models_as_chains): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_cif_conversion): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.segmentation_fault): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xmanip): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_atoms_by_name): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.nequal): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_mask_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.divide_by_zero): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.feature_enhanced_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.TAAM_minus_IAM): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.debug_memory): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.example_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/samosa.join): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_model_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wavelength_units): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.aev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.mp_spotfinder_server_read_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_include_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_does_not_contain_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_sphinx_html): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.tcsh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/sphinx.build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_untested): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.getting_started): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wxpython): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_install_script_bat): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.saturation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mp_geo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.double_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.electrons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.probe2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mask): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.biomt_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cns_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.perigee): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.symmetry_search): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.auto_sharpen): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_repository_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_module_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.link_as_geometry_restraints_edits): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.lattice_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.euclidean_model_matching): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rigid_bond_test): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_remediator): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_available_slots): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.mtrix_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.precession_view): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.grow_density): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.depends_on): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_cctbx_bundle_for_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.split_data_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remove_unused_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_atom_selection): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.int_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.resource_monitor_plot): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.parallel_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.form_factor_query): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cbf_read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_sys_executable): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.check_libcpp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numeric_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.distance_difference): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.help): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.inspect_r_free_flags): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_binary_bundle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.emringer_score): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_header): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_exp_times): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_date_and_time): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.masks): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.TAAM_minus_IAM): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.py_compile_all): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.simple_map_coefficients): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.refine_anomalous_substructure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports_crude): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bash): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_commands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_contains_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.printenv): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clear_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_windows_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/xcif.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.epydoc_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_ext): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remove_tree): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_qstat_counts): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_centers_of_mass): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.join_fragment_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.plot_detector_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validate_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdbtools): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.blast_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.explore_completeness): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.wait_for_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.probescore_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.verify_mon_lib_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.split_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.dtrace): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.validate_H): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbf.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_regression.test_nightly): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.r_factor_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.altloc_remediate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.subgroups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prune_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.absolute_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.super): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.reflection_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_calls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_completion_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numpy_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.xtrapol8): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sort_hetatms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_old_style_classes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ss_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.path_utility): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_blobs): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.seconds_since_the_epoch): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.analyse_code_comments): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.reduce2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.build_phil_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_r_factors_by_shell): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_sizes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_as_fasta): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.water_b_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.find_active_area): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.b_factor_stats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.create): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.extract_code_from_txt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.dump_as_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.diffuse): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bibtex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.unpack_in_sources): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.prime_factors_of): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fobs_minus_fobs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.eltbx.show_fp_fdp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_systematic_absences): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_platform_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.where_is_that_cif_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mon_lib_cif_triage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz2map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.print_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.benchmark_refinement): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_box): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.raise_exception_for_testing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_pickled_function): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.pdflatex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.configure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.cout): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.multiplicity_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reindex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.holton_geometry_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.exec): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_structure_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.hbond): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_source_files_sorted_by_size): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.structure_factor_timings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.validate_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.add_conformations): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_tests_parallel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.web.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.segment_and_split_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validation_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.model_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_unzipsfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_registry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.show_connectivity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.search_pdb_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.flip_symmetric_amino_acids): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rank_scale_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.compare_datasets): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clean_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.overload): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage_gui): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fem): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.debugging.hydrogenate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_env): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.valgrind): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.read_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.simulate_collection): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.install_format): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.image_availability): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_options): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.plot_anomalous_scattering): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.remove_outliers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.the_run_down): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_miller_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.add_docstrings_with_ai): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.ligand_restraints_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.refresh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.matthews): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_under_build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.geometry_minimization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_host_and_user): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fmodel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.tst_memory): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_not_show_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.git_avoid_merges): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.insert_scale_records): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.signal_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.explore_metric_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.valence_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.estimate_bijvoet_ratio): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reciprocal_space_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_matching_formats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bootstrap): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.find_distances): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.transfer_crystal_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_tls_groups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_mac_app): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fab_elbow_angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.dlsnxs2cbf): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/xcif.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.sort_atoms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_but_no_repr): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.get_pubmed_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.qttbx.view_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fake_f_obs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_full_command_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.gcd): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prepare_pdb_deposition): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.poscar_as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_process): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.apply_tapenade_hints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reduce_cryoem_resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.reduce_cryoem_resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.scons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_as_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.sdb_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.table_one): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.crystal_symmetry_from_any): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_matching_images): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.distance_least_squares): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/samosa.scale): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.helix_sheet_recs_as_pdb_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.holton_geometry_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/xcif.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.arginine_geometry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phasertng.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.f000): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ribbons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.loggraph): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.inexact): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.qscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.index): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.next_gen_atom_typing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.bfactor_plot): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.any2unix): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_reticular_twin_laws): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cc_star): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remote_processing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.thin_client): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.polder): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.gdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.easy_qsub): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dano_as_amplitudes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.fem_include_search_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/labelit.png): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.wx_display): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.chunk): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.dynamics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.solver): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_diff_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_tests): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.get_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.split): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_in_repositories): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.cod_select_and_pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_residue_in_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.detector_superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.lcm): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_pythonpath): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_file_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.xplor.map.show_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.generate_error_h): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.latex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.env_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.display_parallax_correction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_restraints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.hierarchy): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_rotarama_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.visualize_r_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.csv_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_cablam_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_model_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dtrek.to_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.nested_cpp_loops_with_check_signals): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_dist): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_bin_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_as_xyz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install_conda): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.export_scalepack_unmerged): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.reindent): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.density_modification): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.nonbonded_overlaps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.radial_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_variable_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.csh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.select_best_starting_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.box_around_molecule): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.insert_write_at_start_of_each_procedure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.any2nexus): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.anomalous_differences_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.space_group_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_correlation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maximum_entropy_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_accumulation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.try_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.massage_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_reserved_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 fs:180: Writing INSTALLER in debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.30.0.dist-info D: dh_python3 fs:192: Deleting WHEEL and RECORD in debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.30.0.dist-info D: dh_python3 fs:180: Writing INSTALLER in debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info D: dh_python3 fs:192: Deleting WHEEL and RECORD in debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info D: dh_python3 fs:397: package python3-cctbx details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.30.0.dist-info/METADATA', 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.14')}, 'ext_stableabi': set(), 'ext_no_version': set()} D: dh_python3 depends:148: generating dependencies for package python3-cctbx D: dh_python3 pydist:237: trying to find dependency for hdf5plugin (python=None) D: dh_python3 pydist:281: dependency: module hdf5plugin is known to pydist: [PyDist(name='hdf5plugin', versions={Version('3.14')}, dependency='python3-hdf5plugin', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for h5py (python=None) D: dh_python3 pydist:281: dependency: module h5py is known to pydist: [PyDist(name='h5py', versions={Version('3.14')}, dependency='python3-h5py', standard='PEP386', rules=[]), PyDist(name='h5py', versions={Version('3.14')}, dependency='python3-h5py', standard=None, rules=[])] D: dh_python3 pydist:358: dependency: included in build-deps with limits D: dh_python3 pydist:237: trying to find dependency for numpy (python=None) D: dh_python3 pydist:281: dependency: module numpy is known to pydist: [PyDist(name='numpy', versions={Version('3.14')}, dependency='python3-numpy', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:281: dependency: module matplotlib is known to pydist: [PyDist(name='matplotlib', versions={Version('3.14')}, dependency='python3-matplotlib', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for mrcfile (python=None) D: dh_python3 pydist:281: dependency: module mrcfile is known to pydist: [PyDist(name='mrcfile', versions={Version('3.14')}, dependency='python3-mrcfile', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for natsort (python=None) D: dh_python3 pydist:281: dependency: module natsort is known to pydist: [PyDist(name='natsort', versions={Version('3.14')}, dependency='python3-natsort', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for nxmx (python=None) D: dh_python3 pydist:281: dependency: module nxmx is known to pydist: [PyDist(name='nxmx', versions={Version('3.14')}, dependency='python3-nxmx', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for ordered_set (python=None) D: dh_python3 pydist:281: dependency: module ordered-set is known to pydist: [PyDist(name='ordered-set', versions={Version('3.14')}, dependency='python3-ordered-set', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for pint (python=None) D: dh_python3 pydist:281: dependency: module pint is known to pydist: [PyDist(name='pint', versions={Version('3.14')}, dependency='python3-pint', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for procrunner (python=None) D: dh_python3 pydist:281: dependency: module procrunner is known to pydist: [PyDist(name='procrunner', versions={Version('3.14')}, dependency='python3-procrunner', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for pymol (python=None) D: dh_python3 pydist:281: dependency: module pymol is known to pydist: [PyDist(name='pymol', versions={Version('3.14')}, dependency='python3-pymol', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for requests (python=None) D: dh_python3 pydist:281: dependency: module requests is known to pydist: [PyDist(name='requests', versions={Version('3.14')}, dependency='python3-requests', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for scipy (python=None) D: dh_python3 pydist:281: dependency: module scipy is known to pydist: [PyDist(name='scipy', versions={Version('3.14')}, dependency='python3-scipy', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for six (python=None) D: dh_python3 pydist:281: dependency: module six is known to pydist: [PyDist(name='six', versions={Version('3.14')}, dependency='python3-six', standard='PEP386', rules=[]), PyDist(name='six', versions={Version('3.14')}, dependency='python3-six', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for PIL (python=None) D: dh_python3 pydist:281: dependency: module pil is known to pydist: [PyDist(name='pil', versions={Version('3.14')}, dependency='python3-pil', standard=None, rules=[]), PyDist(name='pil', versions={Version('3.14')}, dependency='python3-pil', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for tqdm (python=None) D: dh_python3 pydist:281: dependency: module tqdm is known to pydist: [PyDist(name='tqdm', versions={Version('3.14')}, dependency='python3-tqdm', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for wxPython (python=None) D: dh_python3 pydist:281: dependency: module wxpython is known to pydist: [PyDist(name='wxpython', versions={Version('3.14')}, dependency='python3-wxgtk4.0', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 depends:330: D={'python3-mrcfile', 'python3-matplotlib', 'python3-pymol', 'python3-tqdm', 'python3-hdf5plugin', 'python3-nxmx', 'python3-pil', 'python3-requests', 'python3-h5py (>= 3)', 'python3-numpy', 'python3-procrunner', 'python3-ordered-set', 'python3-wxgtk4.0', 'python3-pint', 'python3 (<< 3.15)', 'python3 (>= 3.14~)', 'python3:any', 'python3-natsort', 'python3-scipy', 'python3-six'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cctbx/usr/share/lintian/overrides install -p -m0644 debian/python3-cctbx.lintian-overrides debian/python3-cctbx/usr/share/lintian/overrides/python3-cctbx dh_perl -a -O--buildsystem=pybuild rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' dh_auto_build -- -s custom --build-args="dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" pybuild --build -i python{version} -p 3.14 -s custom --build-args="dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" --parallel=8 I: pybuild base:385: dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python3.14/include rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so ln -s libiotbx_mtz.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so ln -s libmmtbx_masks.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libccp4io.so ln -s libccp4io.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libccp4io.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libspotfinder.so ln -s libspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libspotfinder.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libann_adaptor.so ln -s libann_adaptor.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libann_adaptor.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so ln -s libasymmetric_map.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so ln -s libdxtbxspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libcctbx.so ln -s libcctbx.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libcctbx.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so ln -s libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so ln -s libscitbx_slatec.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libomptbx.so ln -s libomptbx.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libomptbx.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so ln -s libscitbx_minpack.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so ln -s libiotbx_xplor.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so ln -s libiotbx_pdb.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/librstbx.so ln -s librstbx.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/librstbx.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so ln -s libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libxcif.so ln -s libxcif.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libxcif.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so ln -s libscitbx_boost_python.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libcbf-private.so ln -s libcbf-private.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libcbf-private.so rm -f debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so ln -s libmmtbx_tls.so.0.0.1 debian/libcctbx-dev/usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so install -m0755 -d debian/libcctbx-dev/usr/lib/cctbx/python3.14 rm -f debian/libcctbx-dev/usr/lib/cctbx/python3.14/include ln -s ../../../include/cctbx debian/libcctbx-dev/usr/lib/cctbx/python3.14/include make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' dh_strip_nondeterminism -a -O--buildsystem=pybuild Using 1786283648 as canonical time Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ncbi_blast.xml.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ebi_blast.xml.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O2-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Se_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/S_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/D1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/N_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/B_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/T_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo5+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/P_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/C_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/P_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/N_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Se_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/T1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/D_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/S_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/B_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/C_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo6+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip dh_compress -a -O--buildsystem=pybuild cd debian/libcctbx0 cd debian/libcctbx-dev cd debian/python3-cctbx chmod a-x usr/share/doc/libcctbx0/changelog usr/share/doc/libcctbx0/changelog.Debian usr/share/doc/libcctbx0/changelog.Debian.ppc64el chmod a-x usr/share/doc/python3-cctbx/changelog usr/share/doc/python3-cctbx/changelog.Debian usr/share/doc/python3-cctbx/changelog.Debian.ppc64el chmod a-x usr/share/doc/libcctbx-dev/changelog usr/share/doc/libcctbx-dev/changelog.Debian usr/share/doc/libcctbx-dev/changelog.Debian.ppc64el gzip -9nf usr/share/doc/libcctbx0/changelog usr/share/doc/libcctbx0/changelog.Debian usr/share/doc/libcctbx0/changelog.Debian.ppc64el gzip -9nf usr/share/doc/python3-cctbx/changelog usr/share/doc/python3-cctbx/changelog.Debian usr/share/doc/python3-cctbx/changelog.Debian.ppc64el gzip -9nf usr/share/doc/libcctbx-dev/changelog usr/share/doc/libcctbx-dev/changelog.Debian usr/share/doc/libcctbx-dev/changelog.Debian.ppc64el cd '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' cd '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' cd '/build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1' dh_fixperms -a -O--buildsystem=pybuild find debian/libcctbx0 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cctbx ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx0/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx0/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx0 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libcctbx-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-cctbx/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cctbx/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cctbx/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cctbx/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/lib/debug/.dwz/powerpc64le-linux-gnu dwz -mdebian/libcctbx0/usr/lib/debug/.dwz/powerpc64le-linux-gnu/libcctbx0.debug -M/usr/lib/debug/.dwz/powerpc64le-linux-gnu/libcctbx0.debug -- debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libxcif.so.0.0.1 install -m0755 -d debian/python3-cctbx/usr/lib/debug/.dwz/powerpc64le-linux-gnu dwz -mdebian/python3-cctbx/usr/lib/debug/.dwz/powerpc64le-linux-gnu/python3-cctbx.debug -M/usr/lib/debug/.dwz/powerpc64le-linux-gnu/python3-cctbx.debug -- debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --compress-debug-sections debian/libcctbx0/usr/lib/debug/.dwz/powerpc64le-linux-gnu/libcctbx0.debug chmod 0644 -- debian/libcctbx0/usr/lib/debug/.dwz/powerpc64le-linux-gnu/libcctbx0.debug objcopy --compress-debug-sections debian/python3-cctbx/usr/lib/debug/.dwz/powerpc64le-linux-gnu/python3-cctbx.debug chmod 0644 -- debian/python3-cctbx/usr/lib/debug/.dwz/powerpc64le-linux-gnu/python3-cctbx.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcctbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/de/4a35c0f9103bb7aa16e69202a3c4d8cb60dd39.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/4ba85f4629d8089809afe5e10495a34ec366ff.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/4ba85f4629d8089809afe5e10495a34ec366ff.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/4ba85f4629d8089809afe5e10495a34ec366ff.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/004a81f2c85e0fc65aa18e685d3cdd13c5ee23.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/de/4a35c0f9103bb7aa16e69202a3c4d8cb60dd39.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcctbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/de/4a35c0f9103bb7aa16e69202a3c4d8cb60dd39.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcctbx.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/004a81f2c85e0fc65aa18e685d3cdd13c5ee23.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85/e48b7f2e51bfe96e16dbd1fcdd9bfcccac189f.debug objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/004a81f2c85e0fc65aa18e685d3cdd13c5ee23.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/357fc9827201a29659deca2dad9a183dfd44f7.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85/e48b7f2e51bfe96e16dbd1fcdd9bfcccac189f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85/e48b7f2e51bfe96e16dbd1fcdd9bfcccac189f.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/59 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libomptbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/59/69dd046c753607490551b247138f5f6810a1fe.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/59/69dd046c753607490551b247138f5f6810a1fe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libomptbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/59/69dd046c753607490551b247138f5f6810a1fe.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libomptbx.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a2 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libccp4io.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a2/18be2e3550068cb87ba211ade29b421b57483e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/357fc9827201a29659deca2dad9a183dfd44f7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-powerpc64le-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a2/18be2e3550068cb87ba211ade29b421b57483e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libccp4io.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/357fc9827201a29659deca2dad9a183dfd44f7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a2/18be2e3550068cb87ba211ade29b421b57483e.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libccp4io.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/9e/cd2e820932325ce7242706070bf5dc93ad699d.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/afc356adf3f4552e9f05081c1d3e7c7afb0e81.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/afc356adf3f4552e9f05081c1d3e7c7afb0e81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/afc356adf3f4552e9f05081c1d3e7c7afb0e81.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-powerpc64le-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/9e/cd2e820932325ce7242706070bf5dc93ad699d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/9e/cd2e820932325ce7242706070bf5dc93ad699d.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/d0e1b67e3c65c385353bab077d141583b42f91.debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f5/a63f8ade9d0b05e40654be903bfd3511117da9.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f5/a63f8ade9d0b05e40654be903bfd3511117da9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f5/a63f8ade9d0b05e40654be903bfd3511117da9.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/7c objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/7c/07eb7b7dcbb1f12e5f8ce60c3a3767173c7b37.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/d0e1b67e3c65c385353bab077d141583b42f91.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/d0e1b67e3c65c385353bab077d141583b42f91.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/f28703a8a5a902d2b1953bbb8729395272aa10.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/7c/07eb7b7dcbb1f12e5f8ce60c3a3767173c7b37.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/7c/07eb7b7dcbb1f12e5f8ce60c3a3767173c7b37.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/78 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libxcif.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/78/0d99519656e17bf7c43d134fe959afe296178d.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/78/0d99519656e17bf7c43d134fe959afe296178d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libxcif.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/78/0d99519656e17bf7c43d134fe959afe296178d.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libxcif.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/36 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/36/7983a43d29ea0b71f792f18a13ca389ba0bcf8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/f28703a8a5a902d2b1953bbb8729395272aa10.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/f28703a8a5a902d2b1953bbb8729395272aa10.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/9cac7b384848156309571b8e2392de1c087266.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/9cac7b384848156309571b8e2392de1c087266.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/9cac7b384848156309571b8e2392de1c087266.debug debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/77987730a3c9f7ecb8ba25875efcabe6be75da.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/77987730a3c9f7ecb8ba25875efcabe6be75da.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/77987730a3c9f7ecb8ba25875efcabe6be75da.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/727badd014b6a21d28ac1a43d50530c8205237.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/727badd014b6a21d28ac1a43d50530c8205237.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/727badd014b6a21d28ac1a43d50530c8205237.debug debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/36582e98ec9c1aefdaf8dacbd58b0793909fe9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/36582e98ec9c1aefdaf8dacbd58b0793909fe9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/36582e98ec9c1aefdaf8dacbd58b0793909fe9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/b85271647e930f8fe993c408fabdd0fa0b1bc1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/b85271647e930f8fe993c408fabdd0fa0b1bc1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/b85271647e930f8fe993c408fabdd0fa0b1bc1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/f317420b90eee3225f2e09861d107e8378c263.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/36/7983a43d29ea0b71f792f18a13ca389ba0bcf8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/36/7983a43d29ea0b71f792f18a13ca389ba0bcf8.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cd/11b7570c095afc769ec244f091c3741e3d20d3.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cd/11b7570c095afc769ec244f091c3741e3d20d3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cd/11b7570c095afc769ec244f091c3741e3d20d3.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libann_adaptor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1d/c579542a8e7554ed0d569ad6b4b52da40c0674.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1d/c579542a8e7554ed0d569ad6b4b52da40c0674.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libann_adaptor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1d/c579542a8e7554ed0d569ad6b4b52da40c0674.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libann_adaptor.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1c objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1c/20e9f1f1c7962ca9d03d49054783c3a3d2d285.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1c/20e9f1f1c7962ca9d03d49054783c3a3d2d285.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1c/20e9f1f1c7962ca9d03d49054783c3a3d2d285.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/af/9e552ba2c2121829a24d7eae35fae651fce206.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/af/9e552ba2c2121829a24d7eae35fae651fce206.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/af/9e552ba2c2121829a24d7eae35fae651fce206.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libspotfinder.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f2/28ad567369ad1f29f5e028694e415331fb15d4.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f2/28ad567369ad1f29f5e028694e415331fb15d4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f2/28ad567369ad1f29f5e028694e415331fb15d4.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/18 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/18/0e02073464600ecb2e18c5fe81ee20bc3d1d8a.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/18/0e02073464600ecb2e18c5fe81ee20bc3d1d8a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/18/0e02073464600ecb2e18c5fe81ee20bc3d1d8a.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0c objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0c/85ec2b14aacb89edc4ca190501facf55656099.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0c/85ec2b14aacb89edc4ca190501facf55656099.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0c/85ec2b14aacb89edc4ca190501facf55656099.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/06 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/librstbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/06/4d2774fca2c6c8c911734efde5ae981b38ad5f.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/06/4d2774fca2c6c8c911734efde5ae981b38ad5f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/librstbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/06/4d2774fca2c6c8c911734efde5ae981b38ad5f.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/librstbx.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/52 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcbf-private.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/52/67f2fbe0d7b8864118752ee1f607035ca81548.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/52/67f2fbe0d7b8864118752ee1f607035ca81548.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcbf-private.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/52/67f2fbe0d7b8864118752ee1f607035ca81548.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcbf-private.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1c objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1c/9de2600d954a3f5ae47f0fee5299d2a679bb92.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1c/9de2600d954a3f5ae47f0fee5299d2a679bb92.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1c/9de2600d954a3f5ae47f0fee5299d2a679bb92.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/89/de2b05a4244d03dacb82a665196df9fa8f2093.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/f317420b90eee3225f2e09861d107e8378c263.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-powerpc64le-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/89/de2b05a4244d03dacb82a665196df9fa8f2093.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/89/de2b05a4244d03dacb82a665196df9fa8f2093.debug debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libcctbx0/usr/lib/debug/.dwz/powerpc64le-linux-gnu debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libcctbx0/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libcctbx0/usr/lib/debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc ln -s libcctbx0 debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc/libcctbx0-dbgsym install -m0755 -d debian/.debhelper/libcctbx0 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/f317420b90eee3225f2e09861d107e8378c263.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/5d084887b807ca9ab4bbbca860c4a3ae9c8e68.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/5d084887b807ca9ab4bbbca860c4a3ae9c8e68.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/5d084887b807ca9ab4bbbca860c4a3ae9c8e68.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/cf48cf7ecbab25f4dca3eea883903b2577b412.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/cf48cf7ecbab25f4dca3eea883903b2577b412.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/cf48cf7ecbab25f4dca3eea883903b2577b412.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/91c4851b5053caffc524cf79c26019fa702dcb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/91c4851b5053caffc524cf79c26019fa702dcb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/91c4851b5053caffc524cf79c26019fa702dcb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/a2e1310eadcc5b7fc7bb06616e4ee0c02c7f85.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/a2e1310eadcc5b7fc7bb06616e4ee0c02c7f85.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/a2e1310eadcc5b7fc7bb06616e4ee0c02c7f85.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7d/3d5a7b03ae1abfb505766189ffc7672560c43e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7d/3d5a7b03ae1abfb505766189ffc7672560c43e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7d/3d5a7b03ae1abfb505766189ffc7672560c43e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/090864d4d3fd036210de2599747f4b10994aef.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/090864d4d3fd036210de2599747f4b10994aef.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/090864d4d3fd036210de2599747f4b10994aef.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22/a68c9ccf13b55f4941e7441aac72da3541fec2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22/a68c9ccf13b55f4941e7441aac72da3541fec2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22/a68c9ccf13b55f4941e7441aac72da3541fec2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/bff5c9a0c1806c03bc25b8396b3f500d338999.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/bff5c9a0c1806c03bc25b8396b3f500d338999.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/bff5c9a0c1806c03bc25b8396b3f500d338999.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/9b80067b3c9b0b3dfc0381644db7162bf354d2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/9b80067b3c9b0b3dfc0381644db7162bf354d2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/9b80067b3c9b0b3dfc0381644db7162bf354d2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/f32cf83a3a21d4592320567b9fbccac2fff9fa.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/f32cf83a3a21d4592320567b9fbccac2fff9fa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/f32cf83a3a21d4592320567b9fbccac2fff9fa.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/cd39413f8be42602ba8bdf27e1476fd2e9b952.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/cd39413f8be42602ba8bdf27e1476fd2e9b952.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/cd39413f8be42602ba8bdf27e1476fd2e9b952.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/f6c14e525fee931a0aa7abef455f29b3c11bfa.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/f6c14e525fee931a0aa7abef455f29b3c11bfa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/f6c14e525fee931a0aa7abef455f29b3c11bfa.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/6172cad681f25c581fdcc309b65bb457c4bc2b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/6172cad681f25c581fdcc309b65bb457c4bc2b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/81/6172cad681f25c581fdcc309b65bb457c4bc2b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/42a5682c8d520fefb2705b93fd5921b4db81f8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/42a5682c8d520fefb2705b93fd5921b4db81f8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/42a5682c8d520fefb2705b93fd5921b4db81f8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/2ad740ec0e84cb76f64682085adeb9c65824ea.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/2ad740ec0e84cb76f64682085adeb9c65824ea.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/2ad740ec0e84cb76f64682085adeb9c65824ea.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/df11b0cc4c6d765b57fadbb87b4440cac5bd71.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/df11b0cc4c6d765b57fadbb87b4440cac5bd71.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/df11b0cc4c6d765b57fadbb87b4440cac5bd71.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/1aecf2b358bb2d831d0ae99495d860228c1bb3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/1aecf2b358bb2d831d0ae99495d860228c1bb3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/1aecf2b358bb2d831d0ae99495d860228c1bb3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/a974aff3358e9908459adde56021fd64ddfec0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/a974aff3358e9908459adde56021fd64ddfec0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/a974aff3358e9908459adde56021fd64ddfec0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/5f2dcbe0a2dc267679cfe16a59e718cc3cd0e7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/5f2dcbe0a2dc267679cfe16a59e718cc3cd0e7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/5f2dcbe0a2dc267679cfe16a59e718cc3cd0e7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7/63b8f54f764a195a9a6bb28f11dd5402052f06.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7/63b8f54f764a195a9a6bb28f11dd5402052f06.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7/63b8f54f764a195a9a6bb28f11dd5402052f06.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/190e5f514186b5b5987d339f43cc516a0e68e0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/190e5f514186b5b5987d339f43cc516a0e68e0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/190e5f514186b5b5987d339f43cc516a0e68e0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/3436cb44123eff93ed6cbda9a593e3f99d686a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/3436cb44123eff93ed6cbda9a593e3f99d686a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/3436cb44123eff93ed6cbda9a593e3f99d686a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/632db44f2014712669691a46184376f626627f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/632db44f2014712669691a46184376f626627f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/632db44f2014712669691a46184376f626627f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/d6bf2ba4cbb707777bbc2ea44c6ea68d0ec1a8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/d6bf2ba4cbb707777bbc2ea44c6ea68d0ec1a8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/d6bf2ba4cbb707777bbc2ea44c6ea68d0ec1a8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2/49646c5f9fdde613cbd41ab9e6869bce7224ae.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2/49646c5f9fdde613cbd41ab9e6869bce7224ae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2/49646c5f9fdde613cbd41ab9e6869bce7224ae.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69/234a026457af4f17ddd7af8c7659d867920392.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69/234a026457af4f17ddd7af8c7659d867920392.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69/234a026457af4f17ddd7af8c7659d867920392.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/042a9e0bbc993a41fe45ed753f1a17ab4bd9f5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/042a9e0bbc993a41fe45ed753f1a17ab4bd9f5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/042a9e0bbc993a41fe45ed753f1a17ab4bd9f5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/c811b8a80967959c3cde2fb6bc761b7b57fd13.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/c811b8a80967959c3cde2fb6bc761b7b57fd13.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/c811b8a80967959c3cde2fb6bc761b7b57fd13.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/fd14107522c4cb003df512d24fdc8b04b2b371.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/fd14107522c4cb003df512d24fdc8b04b2b371.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/fd14107522c4cb003df512d24fdc8b04b2b371.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/3385cdfbb33203fb35b6770ac5a183d16b80c9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/3385cdfbb33203fb35b6770ac5a183d16b80c9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/3385cdfbb33203fb35b6770ac5a183d16b80c9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/ea6596b11c24b886965d6345484bbbdef9a897.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/ea6596b11c24b886965d6345484bbbdef9a897.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/ea6596b11c24b886965d6345484bbbdef9a897.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/3ed0bd862a507bbe47104eb38cd40a298bdf2c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/3ed0bd862a507bbe47104eb38cd40a298bdf2c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/3ed0bd862a507bbe47104eb38cd40a298bdf2c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/8674a18a79ea918d1fcbcb871579851627d5f6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/8674a18a79ea918d1fcbcb871579851627d5f6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/8674a18a79ea918d1fcbcb871579851627d5f6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/1f80bde22a1fbbe99f339cf68db4f43a94ef05.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/1f80bde22a1fbbe99f339cf68db4f43a94ef05.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/1f80bde22a1fbbe99f339cf68db4f43a94ef05.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/c218b47d1941b2e551c8aca7b01da6ec944b08.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/c218b47d1941b2e551c8aca7b01da6ec944b08.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/c218b47d1941b2e551c8aca7b01da6ec944b08.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/933bb1b0bc9694e55366de41f53bafe4b8ffd0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/933bb1b0bc9694e55366de41f53bafe4b8ffd0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/933bb1b0bc9694e55366de41f53bafe4b8ffd0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/d87b26a711f8928bbfffc091f1a6ba5d0dda18.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/d87b26a711f8928bbfffc091f1a6ba5d0dda18.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/d87b26a711f8928bbfffc091f1a6ba5d0dda18.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/8679da95c71b12b7637301191f829026065199.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/8679da95c71b12b7637301191f829026065199.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/8679da95c71b12b7637301191f829026065199.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/de9d3cd8cde38874cc9c4985972a059dbd1687.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/de9d3cd8cde38874cc9c4985972a059dbd1687.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/de9d3cd8cde38874cc9c4985972a059dbd1687.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/8302b4f067cf3dc1b5924dae4bb7bf564b23bc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/8302b4f067cf3dc1b5924dae4bb7bf564b23bc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/8302b4f067cf3dc1b5924dae4bb7bf564b23bc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/abe3af215fc0f8404a43ca6f634f162e98e0c1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/abe3af215fc0f8404a43ca6f634f162e98e0c1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/abe3af215fc0f8404a43ca6f634f162e98e0c1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/a300230e9d0853cc72d6e015164057aaddde5c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/a300230e9d0853cc72d6e015164057aaddde5c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/a300230e9d0853cc72d6e015164057aaddde5c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/d4d10c82eccba8c7f2a121d0affa74a49a2b34.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/d4d10c82eccba8c7f2a121d0affa74a49a2b34.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/d4d10c82eccba8c7f2a121d0affa74a49a2b34.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/6f11feee4416f51821562f230c1aa5f58369ae.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/6f11feee4416f51821562f230c1aa5f58369ae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/6f11feee4416f51821562f230c1aa5f58369ae.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/e77b3f74acc82fae988b0ba3d132fecd80f2bf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/e77b3f74acc82fae988b0ba3d132fecd80f2bf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/e77b3f74acc82fae988b0ba3d132fecd80f2bf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/4e3209396db220f7311ffc7d5cf4370eb8b1a1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/4e3209396db220f7311ffc7d5cf4370eb8b1a1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/4e3209396db220f7311ffc7d5cf4370eb8b1a1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/e832cb4aeabeba19c0cb50054c68d90f8e2bbf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/e832cb4aeabeba19c0cb50054c68d90f8e2bbf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/e832cb4aeabeba19c0cb50054c68d90f8e2bbf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/ba5581ab308deeddb67412004189ddb1e9dd7c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/ba5581ab308deeddb67412004189ddb1e9dd7c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/ba5581ab308deeddb67412004189ddb1e9dd7c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/6b21902a6988645915da125777f192673427b6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/6b21902a6988645915da125777f192673427b6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/6b21902a6988645915da125777f192673427b6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/0312154cce635bf671ba17ae6498ca02421511.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/0312154cce635bf671ba17ae6498ca02421511.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/0312154cce635bf671ba17ae6498ca02421511.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/f466b540c183a81799620265aa63a641be4829.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/f466b540c183a81799620265aa63a641be4829.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/f466b540c183a81799620265aa63a641be4829.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/07 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/07/3241da5a1e6bdda060dfefe3cf979924e31b60.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/07/3241da5a1e6bdda060dfefe3cf979924e31b60.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/07/3241da5a1e6bdda060dfefe3cf979924e31b60.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/82b9ddae5a9ae0b53444304cf94665a912c104.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/82b9ddae5a9ae0b53444304cf94665a912c104.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/82b9ddae5a9ae0b53444304cf94665a912c104.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/b14e55ea2be4ddcbb4473eb2ab7efa76b32c31.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/b14e55ea2be4ddcbb4473eb2ab7efa76b32c31.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/b14e55ea2be4ddcbb4473eb2ab7efa76b32c31.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/d520c025a705cef4e350801084ca79f94ed426.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/d520c025a705cef4e350801084ca79f94ed426.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/d520c025a705cef4e350801084ca79f94ed426.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/a1ee8b184e436df271470ea5706ba66691f586.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/a1ee8b184e436df271470ea5706ba66691f586.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/a1ee8b184e436df271470ea5706ba66691f586.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/754967dfc1ca788b9edec8f8ae912dc17b6db8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/754967dfc1ca788b9edec8f8ae912dc17b6db8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/754967dfc1ca788b9edec8f8ae912dc17b6db8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb/07e149eb3bf6e1dc7763a07e22b5277ae97a9d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb/07e149eb3bf6e1dc7763a07e22b5277ae97a9d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb/07e149eb3bf6e1dc7763a07e22b5277ae97a9d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/7b690f1774c4485f936876535252ea5dc90fbb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/7b690f1774c4485f936876535252ea5dc90fbb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/7b690f1774c4485f936876535252ea5dc90fbb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71/e1767a1e8ffb2562cd480618a8accf28dd6c6b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71/e1767a1e8ffb2562cd480618a8accf28dd6c6b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71/e1767a1e8ffb2562cd480618a8accf28dd6c6b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/7f452641b0e1bcf26b6ed3b75d5e11f55399c6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/7f452641b0e1bcf26b6ed3b75d5e11f55399c6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/7f452641b0e1bcf26b6ed3b75d5e11f55399c6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/d1be067d7ea854338b05508b42613df43d4e5a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/d1be067d7ea854338b05508b42613df43d4e5a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/d1be067d7ea854338b05508b42613df43d4e5a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/73 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/73/5ba67beebb4caff2e9e3c388552ff0eeac8832.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/73/5ba67beebb4caff2e9e3c388552ff0eeac8832.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/73/5ba67beebb4caff2e9e3c388552ff0eeac8832.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/cbcf847fc7b50998d521445c4595c861ae5102.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/cbcf847fc7b50998d521445c4595c861ae5102.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/cbcf847fc7b50998d521445c4595c861ae5102.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/16 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/16/7dcf87a450d8893d6f28705626470667d757f3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/16/7dcf87a450d8893d6f28705626470667d757f3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/16/7dcf87a450d8893d6f28705626470667d757f3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/0e6b7a06cab7697dc08e818a819689c64f9b4e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/0e6b7a06cab7697dc08e818a819689c64f9b4e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/0e6b7a06cab7697dc08e818a819689c64f9b4e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/a01010e943bf230e6cb4f1ec8aeab2847f83ad.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/a01010e943bf230e6cb4f1ec8aeab2847f83ad.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/a01010e943bf230e6cb4f1ec8aeab2847f83ad.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/58b07d952eb70d38a4f60e005dc879cce38a91.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/58b07d952eb70d38a4f60e005dc879cce38a91.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/58b07d952eb70d38a4f60e005dc879cce38a91.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/36251382baa5e4c854441304397838e2b1f82f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/36251382baa5e4c854441304397838e2b1f82f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/36251382baa5e4c854441304397838e2b1f82f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/1a300944c848ba10edc82b5cdf04724ae5ed99.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/1a300944c848ba10edc82b5cdf04724ae5ed99.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/1a300944c848ba10edc82b5cdf04724ae5ed99.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/96b40c861c3da0c7b7aafda98e9551b2f9fe11.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/96b40c861c3da0c7b7aafda98e9551b2f9fe11.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/96b40c861c3da0c7b7aafda98e9551b2f9fe11.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/0165650d3b7d26f1a8263db7ccfd633bbdf32a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/0165650d3b7d26f1a8263db7ccfd633bbdf32a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/0165650d3b7d26f1a8263db7ccfd633bbdf32a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/64bf485b3ab4469aa0614e3b75b3d8c516c7e2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/64bf485b3ab4469aa0614e3b75b3d8c516c7e2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/64bf485b3ab4469aa0614e3b75b3d8c516c7e2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/e939ad4f5e279e46ac461558e567d28df174b0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/e939ad4f5e279e46ac461558e567d28df174b0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/e939ad4f5e279e46ac461558e567d28df174b0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31/23a93887b09505f2658fa86d275599776b17a8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31/23a93887b09505f2658fa86d275599776b17a8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31/23a93887b09505f2658fa86d275599776b17a8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/1efcaf5cc7c3c3037506081723da86451d45d9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/1efcaf5cc7c3c3037506081723da86451d45d9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/1efcaf5cc7c3c3037506081723da86451d45d9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/b5e1bd286a9bd20dc8f492f9a74fd54b105447.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/b5e1bd286a9bd20dc8f492f9a74fd54b105447.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/b5e1bd286a9bd20dc8f492f9a74fd54b105447.debug debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/1fe8210e504a551966987bc3ad5d94c1952f8d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/1fe8210e504a551966987bc3ad5d94c1952f8d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/1fe8210e504a551966987bc3ad5d94c1952f8d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/3574f6330877618274ed30228c472c9d581ac2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/3574f6330877618274ed30228c472c9d581ac2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/3574f6330877618274ed30228c472c9d581ac2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/5ca3204415df37910e6fbba3d54f21e3f7ff6a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/5ca3204415df37910e6fbba3d54f21e3f7ff6a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/5ca3204415df37910e6fbba3d54f21e3f7ff6a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/0e0a04dc574ee8fbf09877c111339ac8539d3a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/0e0a04dc574ee8fbf09877c111339ac8539d3a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/0e0a04dc574ee8fbf09877c111339ac8539d3a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/d8f72a73b9428023fa6fa19cdaba907df0c618.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/d8f72a73b9428023fa6fa19cdaba907df0c618.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/d8f72a73b9428023fa6fa19cdaba907df0c618.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/00513576fd30b2cb75283086fe30d9665b653d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/00513576fd30b2cb75283086fe30d9665b653d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/00513576fd30b2cb75283086fe30d9665b653d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50/d1b4b40c4e86ecd3b43bae0b90c0605cff7551.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50/d1b4b40c4e86ecd3b43bae0b90c0605cff7551.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50/d1b4b40c4e86ecd3b43bae0b90c0605cff7551.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/77a75594c71f5d4b68f4c382d38b8c52471dd1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/77a75594c71f5d4b68f4c382d38b8c52471dd1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/77a75594c71f5d4b68f4c382d38b8c52471dd1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37/dc86dabbe2c000b45a45023830ae13cdb9ef9a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37/dc86dabbe2c000b45a45023830ae13cdb9ef9a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37/dc86dabbe2c000b45a45023830ae13cdb9ef9a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/e4d4d536304e88c8f3364713f5cd55c9252729.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/e4d4d536304e88c8f3364713f5cd55c9252729.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/e4d4d536304e88c8f3364713f5cd55c9252729.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/e6c77f149e76ee41a6b84c1982c1f72d0f0f18.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/e6c77f149e76ee41a6b84c1982c1f72d0f0f18.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/e6c77f149e76ee41a6b84c1982c1f72d0f0f18.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d0/747bd0142714d959e86dafd677f4e5e68ff58b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d0/747bd0142714d959e86dafd677f4e5e68ff58b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d0/747bd0142714d959e86dafd677f4e5e68ff58b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/8749d1b7a04799da01c30d0c70b8d85cb03a96.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/8749d1b7a04799da01c30d0c70b8d85cb03a96.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/8749d1b7a04799da01c30d0c70b8d85cb03a96.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/be06722c5435618a574eda91db65e60df4ef83.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/be06722c5435618a574eda91db65e60df4ef83.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/be06722c5435618a574eda91db65e60df4ef83.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/c38c03c8e2a45939d9fe1f8fd6752a07498c57.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/c38c03c8e2a45939d9fe1f8fd6752a07498c57.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/c38c03c8e2a45939d9fe1f8fd6752a07498c57.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/aa02da66356c857e7aa8fb03ba29882204da15.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/aa02da66356c857e7aa8fb03ba29882204da15.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/aa02da66356c857e7aa8fb03ba29882204da15.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4/8725fb2c556bdc51e1193df5c900cda4c03584.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4/8725fb2c556bdc51e1193df5c900cda4c03584.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4/8725fb2c556bdc51e1193df5c900cda4c03584.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31/251c4a6a3f16323c510d2561dd7acea52a0d92.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31/251c4a6a3f16323c510d2561dd7acea52a0d92.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31/251c4a6a3f16323c510d2561dd7acea52a0d92.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/ac0289add12761ff55899c05938d8f6e0dea37.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/ac0289add12761ff55899c05938d8f6e0dea37.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/ac0289add12761ff55899c05938d8f6e0dea37.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/fda6616a620756e7733e9eb28f9c3d3762ce29.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/fda6616a620756e7733e9eb28f9c3d3762ce29.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/fda6616a620756e7733e9eb28f9c3d3762ce29.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/588bfd81e0dd83f0b28e3b67e504c51523aa56.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/588bfd81e0dd83f0b28e3b67e504c51523aa56.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/588bfd81e0dd83f0b28e3b67e504c51523aa56.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/1885c1944e715d4fbd0460bfdc14fb0c5a5f86.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/1885c1944e715d4fbd0460bfdc14fb0c5a5f86.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/1885c1944e715d4fbd0460bfdc14fb0c5a5f86.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f/f9e2c0653ed42929bc86fb410b0814e501de67.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f/f9e2c0653ed42929bc86fb410b0814e501de67.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f/f9e2c0653ed42929bc86fb410b0814e501de67.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/1b7daa5d9edcdd696de5e2f7854c6754e13caa.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/1b7daa5d9edcdd696de5e2f7854c6754e13caa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/1b7daa5d9edcdd696de5e2f7854c6754e13caa.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/1d10d72f5843bcdeafcc1523c5ba5664ced829.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/1d10d72f5843bcdeafcc1523c5ba5664ced829.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/1d10d72f5843bcdeafcc1523c5ba5664ced829.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/eea4422be0328efdc2b6ef1632c74cce0f3ff9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/eea4422be0328efdc2b6ef1632c74cce0f3ff9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/eea4422be0328efdc2b6ef1632c74cce0f3ff9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/b04b00560a3a500eee7efb5cba811ff6314bb6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/b04b00560a3a500eee7efb5cba811ff6314bb6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fb/b04b00560a3a500eee7efb5cba811ff6314bb6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/f9e7bf8fe757c76d054825a431506668429a33.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/f9e7bf8fe757c76d054825a431506668429a33.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/f9e7bf8fe757c76d054825a431506668429a33.debug debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71/2f8f23e4c38207c15e838b3f1223556085bc8e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71/2f8f23e4c38207c15e838b3f1223556085bc8e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71/2f8f23e4c38207c15e838b3f1223556085bc8e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/2b2a91d6fb4e284f178fcd5924d0d27878a8ba.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/2b2a91d6fb4e284f178fcd5924d0d27878a8ba.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/2b2a91d6fb4e284f178fcd5924d0d27878a8ba.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/c80cce748ac6bba094e9142559ae2fffb7a8a3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/c80cce748ac6bba094e9142559ae2fffb7a8a3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/c80cce748ac6bba094e9142559ae2fffb7a8a3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-powerpc64le-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/c98e79ef54f48ca7ef502b813bee90e07d422a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/c98e79ef54f48ca7ef502b813bee90e07d422a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/c98e79ef54f48ca7ef502b813bee90e07d422a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/59311a9230becd895f42923b1c79287949b2cb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/59311a9230becd895f42923b1c79287949b2cb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/59311a9230becd895f42923b1c79287949b2cb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-powerpc64le-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/62/0f737bd6ca5a162ba06251e3c4eab00ea58745.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c1/dad47bf5d404b3193bd96f97a46f9ec5375b86.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c1/dad47bf5d404b3193bd96f97a46f9ec5375b86.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c1/dad47bf5d404b3193bd96f97a46f9ec5375b86.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/5256a018136f0147881238b80be89ea41448de.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/5256a018136f0147881238b80be89ea41448de.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/5256a018136f0147881238b80be89ea41448de.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/eac881c3f66e557bcafdbe4577acc89f25de50.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/eac881c3f66e557bcafdbe4577acc89f25de50.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/eac881c3f66e557bcafdbe4577acc89f25de50.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77/a462738028246bae4a497ab553575c67ad109d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77/a462738028246bae4a497ab553575c67ad109d.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77/a462738028246bae4a497ab553575c67ad109d.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50/f8a874f041336a4a03c5bd402beba90a9ad66f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50/f8a874f041336a4a03c5bd402beba90a9ad66f.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50/f8a874f041336a4a03c5bd402beba90a9ad66f.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cctbx/usr/lib/debug/.dwz/powerpc64le-linux-gnu debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cctbx/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-cctbx/usr/lib/debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc ln -s python3-cctbx debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc/python3-cctbx-dbgsym install -m0755 -d debian/.debhelper/python3-cctbx dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/libcctbx0/DEBIAN/shlibs install -m0755 -d debian/libcctbx0/DEBIAN echo "libann_adaptor 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libasymmetric_map 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcbf-private 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libccp4io 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx_sgtbx_asu 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libdxtbxspotfinder 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_mtz 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_pdb 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_xplor 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_masks 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_tls 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libomptbx 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "librstbx 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_boost_python 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_minpack 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_slatec 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libsmtbx_refinement_constraints 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libspotfinder 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libxcif 0 libcctbx0 (>= 2026.7+ds2+~3.30.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs chmod 0644 -- debian/libcctbx0/DEBIAN/shlibs mv debian/.debhelper/generated/libcctbx0/triggers.new debian/.debhelper/generated/libcctbx0/triggers rm -f debian/libcctbx-dev/DEBIAN/shlibs rm -f debian/python3-cctbx/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN dpkg-shlibdeps -Tdebian/libcctbx0.substvars debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libxcif.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 install -m0755 -d debian/python3-cctbx/DEBIAN dpkg-shlibdeps -Tdebian/python3-cctbx.substvars debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-powerpc64le-linux-gnu.so debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.14/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_CallFunction used by debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyImport_ImportModule used by debian/libcctbx0/usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_ImportError: it is probably a plugin dpkg-shlibdeps: warning: 51 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld64.so.2.usr-is-merged dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyComplex_FromDoubles: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyImport_AddModule: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PySlice_Type: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyObject_CallFunction: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyObject_CallFunction: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_RuntimeError: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBytes_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 136 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_TypeError: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyComplex_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyObject_Free: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyList_New: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyObject_GetIter: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyExc_RuntimeError: it is probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyObject_HasAttrString: it is probably a plugin dpkg-shlibdeps: warning: 32 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 34 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-powerpc64le-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN install -p -m0644 debian/.debhelper/generated/libcctbx0/triggers debian/libcctbx0/DEBIAN/triggers install -m0755 -d debian/libcctbx-dev/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/postinst cat debian/python3-cctbx.postinst.debhelper >> debian/python3-cctbx/DEBIAN/postinst chmod 0755 -- debian/python3-cctbx/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/prerm cat debian/python3-cctbx.prerm.debhelper >> debian/python3-cctbx/DEBIAN/prerm chmod 0755 -- debian/python3-cctbx/DEBIAN/prerm dh_numpy3 -a -O--buildsystem=pybuild Possible precedence problem between ! and pattern match (m//) at /usr/bin/dh_numpy3 line 68. dh_numpy3: skipping binary package libcctbx0 which does not depend on the NumPy C ABI dh_numpy3: skipping binary package libcctbx-dev which does not depend on the NumPy C ABI mv debian/python3-cctbx.substvars.new debian/python3-cctbx.substvars dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN echo misc:Depends= >> debian/libcctbx0.substvars echo misc:Pre-Depends= >> debian/libcctbx0.substvars install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -cdebian/control -Pdebian/.debhelper/libcctbx0/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcctbx0-dbgsym -DDepends="libcctbx0 (= \${binary:Version})" -DDescription="debug symbols for libcctbx0" -DBuild-Ids="064d2774fca2c6c8c911734efde5ae981b38ad5f 0c85ec2b14aacb89edc4ca190501facf55656099 180e02073464600ecb2e18c5fe81ee20bc3d1d8a 1c20e9f1f1c7962ca9d03d49054783c3a3d2d285 1c9de2600d954a3f5ae47f0fee5299d2a679bb92 1dc579542a8e7554ed0d569ad6b4b52da40c0674 367983a43d29ea0b71f792f18a13ca389ba0bcf8 5267f2fbe0d7b8864118752ee1f607035ca81548 5969dd046c753607490551b247138f5f6810a1fe 780d99519656e17bf7c43d134fe959afe296178d 7c07eb7b7dcbb1f12e5f8ce60c3a3767173c7b37 85e48b7f2e51bfe96e16dbd1fcdd9bfcccac189f 89de2b05a4244d03dacb82a665196df9fa8f2093 9ecd2e820932325ce7242706070bf5dc93ad699d a218be2e3550068cb87ba211ade29b421b57483e af9e552ba2c2121829a24d7eae35fae651fce206 cd11b7570c095afc769ec244f091c3741e3d20d3 de4a35c0f9103bb7aa16e69202a3c4d8cb60dd39 f228ad567369ad1f29f5e028694e415331fb15d4 f5a63f8ade9d0b05e40654be903bfd3511117da9" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libcctbx-dev/DEBIAN echo misc:Depends= >> debian/libcctbx-dev.substvars echo misc:Pre-Depends= >> debian/libcctbx-dev.substvars dpkg-gencontrol -plibcctbx-dev -ldebian/changelog -Tdebian/libcctbx-dev.substvars -cdebian/control -Pdebian/libcctbx-dev install -m0755 -d debian/python3-cctbx/DEBIAN echo misc:Depends= >> debian/python3-cctbx.substvars echo misc:Pre-Depends= >> debian/python3-cctbx.substvars install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -cdebian/control -Pdebian/.debhelper/python3-cctbx/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cctbx-dbgsym -DDepends="python3-cctbx (= \${binary:Version})" -DDescription="debug symbols for python3-cctbx" -DBuild-Ids="00a1ee8b184e436df271470ea5706ba66691f586 032a05702951d8e45d8cf75e11e52c3cc7efaa61 039cac7b384848156309571b8e2392de1c087266 05b5e1bd286a9bd20dc8f492f9a74fd54b105447 073241da5a1e6bdda060dfefe3cf979924e31b60 087471c90008bdee71de55082d0f3365d953e4de 0891c4851b5053caffc524cf79c26019fa702dcb 099caa6cc715044c0a88c3783b6012c653abdfcc 0c42a5682c8d520fefb2705b93fd5921b4db81f8 11de9d3cd8cde38874cc9c4985972a059dbd1687 121fe8210e504a551966987bc3ad5d94c1952f8d 125bb0349de3ae698cdfaea424446bbb58a78654 128e84b52953d949554df40f5667924a60ceb7a3 137467747d9ea87c777a363fe2378517ca057125 146de7727db814a9b7e76042f603410c8949406e 151a40ad7a89a0c61cf412b6ab913979f4778b4d 167dcf87a450d8893d6f28705626470667d757f3 16b55dcca96bc4c99be1c75d4eb0b28d0191e1d8 19394c35c4d885cc6686d0a03f5235c9d86db1cb 1a8ab7e7263d0b7efe3753ec3da461c32c618768 1a96b40c861c3da0c7b7aafda98e9551b2f9fe11 1b0e6b7a06cab7697dc08e818a819689c64f9b4e 1d77a75594c71f5d4b68f4c382d38b8c52471dd1 1ec38c03c8e2a45939d9fe1f8fd6752a07498c57 1ef940d95a4322d6e48d8c28a84a5f616132333b 1f2ad740ec0e84cb76f64682085adeb9c65824ea 1f357fc9827201a29659deca2dad9a183dfd44f7 22a68c9ccf13b55f4941e7441aac72da3541fec2 25090864d4d3fd036210de2599747f4b10994aef 27afc356adf3f4552e9f05081c1d3e7c7afb0e81 27e832cb4aeabeba19c0cb50054c68d90f8e2bbf 2936251382baa5e4c854441304397838e2b1f82f 2ab25b6b2e7aa1ab0c489552cde877204f02cd12 2b7b690f1774c4485f936876535252ea5dc90fbb 2bf317420b90eee3225f2e09861d107e8378c263 2f042a9e0bbc993a41fe45ed753f1a17ab4bd9f5 2f1aecf2b358bb2d831d0ae99495d860228c1bb3 2f6b7c83e3d35ae5e6a7838423f4c0651173af81 3123a93887b09505f2658fa86d275599776b17a8 31251c4a6a3f16323c510d2561dd7acea52a0d92 33a89d0e51b9af26458328e51314729a91fc56be 33c1810469c1109a44e5e1662f847ac243f76965 347a4a7b531f757dddd2930acde470d069467c73 3529b45c8b93df21d9fed224cfad2cd8134b5ff7 353bf0458120f03e42e6db912d43405f8a13e7fe 3675b44741a8450b4043ceec89360ca514f9a2ab 37dc86dabbe2c000b45a45023830ae13cdb9ef9a 38034cc6f76dfef5cf19df30990ed236cd1fe329 3859311a9230becd895f42923b1c79287949b2cb 3a6f11feee4416f51821562f230c1aa5f58369ae 3a9b80067b3c9b0b3dfc0381644db7162bf354d2 3c1a300944c848ba10edc82b5cdf04724ae5ed99 3ce939ad4f5e279e46ac461558e567d28df174b0 3e7ea57826f8472c9b1b36c23c254e8c59ce7b3d 412b0f41d29821496c01bf6ebf3c538507737f3a 417c5e106fcb89f13fa8eef9c8f6dc008abf763f 423ef8730593cbaa4ed7581fe9af30c845b7124f 44d1be067d7ea854338b05508b42613df43d4e5a 464dde87f160d3ef6557bb4ead7bd9854efed10c 469a3c7cb39035098d5b28fe391207c887e7ee98 480fb132bf354fdaec4372f066e57168bc23a14c 48d8deee9de09d9b9725e06a0c2617baffd015cc 49223f7cf87927a4d1f474462db5646f52f6898b 4ae4d4d536304e88c8f3364713f5cd55c9252729 4bc96448f21233870f3bc8e1fd27c526bbb4e852 4df6c14e525fee931a0aa7abef455f29b3c11bfa 4ff9e2c0653ed42929bc86fb410b0814e501de67 50d1b4b40c4e86ecd3b43bae0b90c0605cff7551 50f8a874f041336a4a03c5bd402beba90a9ad66f 51a974aff3358e9908459adde56021fd64ddfec0 52c98e79ef54f48ca7ef502b813bee90e07d422a 52d520c025a705cef4e350801084ca79f94ed426 534325e9a77a0d4e4929e567a99334cbc0f23e35 554e3209396db220f7311ffc7d5cf4370eb8b1a1 5582b9ddae5a9ae0b53444304cf94665a912c104 575256a018136f0147881238b80be89ea41448de 585d084887b807ca9ab4bbbca860c4a3ae9c8e68 592b0021ca8c8ce462e79a6c0669a6dfcd2fccde 5a8679da95c71b12b7637301191f829026065199 5dcbcf847fc7b50998d521445c4595c861ae5102 60727badd014b6a21d28ac1a43d50530c8205237 620f737bd6ca5a162ba06251e3c4eab00ea58745 63cb3777e72628f7cba90099dc4eea3e87f9e8b7 66bd314fcfbecb4f14f7b13a990e68da446de7d0 66ea6596b11c24b886965d6345484bbbdef9a897 671d10d72f5843bcdeafcc1523c5ba5664ced829 67754967dfc1ca788b9edec8f8ae912dc17b6db8 690bc5be04a13e8fea217a16d4f269ba5f837d27 69234a026457af4f17ddd7af8c7659d867920392 6cac0289add12761ff55899c05938d8f6e0dea37 712f8f23e4c38207c15e838b3f1223556085bc8e 71e1767a1e8ffb2562cd480618a8accf28dd6c6b 721efcaf5cc7c3c3037506081723da86451d45d9 735ba67beebb4caff2e9e3c388552ff0eeac8832 75eea4422be0328efdc2b6ef1632c74cce0f3ff9 77a462738028246bae4a497ab553575c67ad109d 781885c1944e715d4fbd0460bfdc14fb0c5a5f86 79b85271647e930f8fe993c408fabdd0fa0b1bc1 79bff5c9a0c1806c03bc25b8396b3f500d338999 7b7f452641b0e1bcf26b6ed3b75d5e11f55399c6 7bf4a9ee93448b9f17f5fbaf71b0cec8325fe30e 7d3d5a7b03ae1abfb505766189ffc7672560c43e 7ee77b3f74acc82fae988b0ba3d132fecd80f2bf 7f1e8067dcfbe8cc86f90482ca04e35acb4e5504 80860f2766b423100bc8038eee2e2da0f4e996c7 810b391471893cdfe9cbfb030141338b46e89f7e 816172cad681f25c581fdcc309b65bb457c4bc2b 82d4d10c82eccba8c7f2a121d0affa74a49a2b34 82f466b540c183a81799620265aa63a641be4829 8758b07d952eb70d38a4f60e005dc879cce38a91 8c8302b4f067cf3dc1b5924dae4bb7bf564b23bc 8cc3c2dccb421b3e2992c8333452d7a20e678a3e 8ccf48cf7ecbab25f4dca3eea883903b2577b412 8cd0e1b67e3c65c385353bab077d141583b42f91 8ceac881c3f66e557bcafdbe4577acc89f25de50 8d5ca3204415df37910e6fbba3d54f21e3f7ff6a 8df17901358bdf17b70e82d7eacef68d0c6486b1 8e34d1de06c51e27c2f88c459f7bc987e9dd3ace 91190e5f514186b5b5987d339f43cc516a0e68e0 93b2598c0834fc0b45638068353042e73f6e85bd 98a4bcc8a2a24fc37c1e7d421d34dceef285453e 98bac933763a1fe3ff5402447f3f0072cf365e49 9977987730a3c9f7ecb8ba25875efcabe6be75da 9a6b21902a6988645915da125777f192673427b6 9aba5581ab308deeddb67412004189ddb1e9dd7c 9c933bb1b0bc9694e55366de41f53bafe4b8ffd0 9df28703a8a5a902d2b1953bbb8729395272aa10 9ea300230e9d0853cc72d6e015164057aaddde5c 9efda6616a620756e7733e9eb28f9c3d3762ce29 9fd8f72a73b9428023fa6fa19cdaba907df0c618 9fe1404692b75f81d3d4ff4901d8d46229f51ad4 a2588bfd81e0dd83f0b28e3b67e504c51523aa56 a385ee95d78f7ebf89e13a5f146bb35e8ea4fa99 a48725fb2c556bdc51e1193df5c900cda4c03584 a6dc6d336e7830169beb6d0c08eda17df9d149be a7c218b47d1941b2e551c8aca7b01da6ec944b08 a8e7ee13d43fff5c57dfe3c381efefcaa6d971cc a90e0a04dc574ee8fbf09877c111339ac8539d3a aabc11ccfce1fc761a94e6ca21fb2cfccc37601f ad1d9a928e12df458b6cd79ac97f84cfb8142fee b0d5cf749e969e07dfd0d69ad024af75268df838 b20165650d3b7d26f1a8263db7ccfd633bbdf32a b24ba85f4629d8089809afe5e10495a34ec366ff b2693de30cbbef9bfbe733a52d924ca5307ec4e5 b3b7c866df0070c3d009902a94fef0e1b35b42dc b65f2dcbe0a2dc267679cfe16a59e718cc3cd0e7 b68674a18a79ea918d1fcbcb871579851627d5f6 b72f11e970bdca2a00cec39698878c44ce88fccd b766460f67672c3ee1c09d09fa7eceaede9c3554 b7fd14107522c4cb003df512d24fdc8b04b2b371 ba5f6006ba97718d1c4985b1fb7567607b7cdee9 bb07e149eb3bf6e1dc7763a07e22b5277ae97a9d bc3574f6330877618274ed30228c472c9d581ac2 bc3ed0bd862a507bbe47104eb38cd40a298bdf2c bcabe3af215fc0f8404a43ca6f634f162e98e0c1 be88f3e61636dac8634bd2760e8fef2622f089fc bee6c77f149e76ee41a6b84c1982c1f72d0f0f18 c0aa02da66356c857e7aa8fb03ba29882204da15 c1dad47bf5d404b3193bd96f97a46f9ec5375b86 c93385cdfbb33203fb35b6770ac5a183d16b80c9 c93436cb44123eff93ed6cbda9a593e3f99d686a cd004a81f2c85e0fc65aa18e685d3cdd13c5ee23 ce2b2a91d6fb4e284f178fcd5924d0d27878a8ba cea2e1310eadcc5b7fc7bb06616e4ee0c02c7f85 cfa01010e943bf230e6cb4f1ec8aeab2847f83ad d0747bd0142714d959e86dafd677f4e5e68ff58b d2490b629448c35bfb7597225bc1d3cea1b852c0 d249646c5f9fdde613cbd41ab9e6869bce7224ae d4ec83aa803ceb160b0d0a964d5d65335fc69884 d5be15591d98d8a0beffeb1e31035ffe52b88119 d635186c46cdc66dfe9ed38a478234aab6741c03 d6539a7cb297b5c66121a5f5e8b653cb9e6ea395 d9657ee0792380a889f32ffb85f3a8b4fb74402e da0312154cce635bf671ba17ae6498ca02421511 da8749d1b7a04799da01c30d0c70b8d85cb03a96 db64bf485b3ab4469aa0614e3b75b3d8c516c7e2 dd4fd14e937fd9cf484bd0f9e22e88cc4a797a72 dedf11b0cc4c6d765b57fadbb87b4440cac5bd71 dfc811b8a80967959c3cde2fb6bc761b7b57fd13 e465e9faf8fc4267041cba4ca9877523d8d57336 e4f32cf83a3a21d4592320567b9fbccac2fff9fa e8c80cce748ac6bba094e9142559ae2fffb7a8a3 e9f9e7bf8fe757c76d054825a431506668429a33 ea632db44f2014712669691a46184376f626627f ec8aa277a736d81ced8786f679791282ef8cab47 ed326e21622f7865ec3c0f7235a952b579a53e2e ef842b1313b0146c65073966b031067400c0bf92 efd87b26a711f8928bbfffc091f1a6ba5d0dda18 f01b7daa5d9edcdd696de5e2f7854c6754e13caa f100513576fd30b2cb75283086fe30d9665b653d f1d732683e168974e59f557bbc82f4785d9c7bd4 f2cd39413f8be42602ba8bdf27e1476fd2e9b952 f2d7742b96d9c3f1c07d90c12caf002681f3123a f4346ac2162b2782a20728eeffd083a0bdc52976 f536582e98ec9c1aefdaf8dacbd58b0793909fe9 f6d6bf2ba4cbb707777bbc2ea44c6ea68d0ec1a8 f763b8f54f764a195a9a6bb28f11dd5402052f06 faf1a4de700a4bf1d49899ba5af424f615d97396 fb1f80bde22a1fbbe99f339cf68db4f43a94ef05 fbb04b00560a3a500eee7efb5cba811ff6314bb6 fbb14e55ea2be4ddcbb4473eb2ab7efa76b32c31 fdbe06722c5435618a574eda91db65e60df4ef83 ff623f51bd5cc2c3346b5c16743a5bcda985ed29" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/libcctbx-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -cdebian/control -Pdebian/libcctbx0 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -cdebian/control -Pdebian/python3-cctbx chmod 0644 -- debian/libcctbx0/DEBIAN/control chmod 0644 -- debian/python3-cctbx/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN cd debian/libcctbx0 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libcctbx-dev/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN cd debian/libcctbx-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-cctbx >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcctbx-dev/DEBIAN/md5sums chmod 0644 -- debian/libcctbx0/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN cd debian/.debhelper/libcctbx0/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python3-cctbx/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cctbx/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/libcctbx0 .. dpkg-deb --root-owner-group --build debian/.debhelper/libcctbx0/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python3-cctbx .. dpkg-deb --root-owner-group --build debian/libcctbx-dev .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cctbx/dbgsym-root .. dpkg-deb: building package 'python3-cctbx' in '../python3-cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb'. dpkg-deb: building package 'libcctbx0' in '../libcctbx0_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb'. dpkg-deb: building package 'python3-cctbx-dbgsym' in '../python3-cctbx-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb'. dpkg-deb: building package 'libcctbx-dev' in '../libcctbx-dev_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb'. dpkg-deb: building package 'libcctbx0-dbgsym' in '../libcctbx0-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.buildinfo dpkg-genchanges --build=any -O../cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-09-12T07:50:05Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 12 Sep 2026 07:50:06 +0000 | +------------------------------------------------------------------------------+ cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.changes: -------------------------------------------------- Format: 1.8 Date: Wed, 02 Sep 2026 01:55:56 +0000 Source: cctbx (2026.7+ds2+~3.30.0+ds1-3) Binary: libcctbx-dev libcctbx0 libcctbx0-dbgsym python3-cctbx python3-cctbx-dbgsym Binary-Only: yes Architecture: ppc64el Version: 2026.7+ds2+~3.30.0+ds1-3+b1 Distribution: unstable Urgency: low Maintainer: Debian Science Maintainers Changed-By: ppc64el Build Daemon (ppc64el-conova-01) Description: libcctbx-dev - Computational Crystallography Toolbox - headers libcctbx0 - Computational Crystallography Toolbox - runtime libraries python3-cctbx - Python Toolbox for crystallography Changes: cctbx (2026.7+ds2+~3.30.0+ds1-3+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for ppc64el; no source changes. * Rebuild with Python 3.14 only Checksums-Sha1: d871ef7b5227e0f29f2c51b1f811f3db6bc3498b 23044 cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.buildinfo 64a9a5043bebb65093384412f7d02f8e430e1b99 1174832 libcctbx-dev_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb fa5c01cbd2edc3a187d844264a7354070b066033 9790456 libcctbx0-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 464a3fbdf0a46b7a56b7739822f737bf172e6c96 2364364 libcctbx0_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 444051d7f2da5196cfa1a013ad24c2d7b7f81a7a 145642908 python3-cctbx-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 78919a2ebab5dab343fc0ea98fdcdca2b1df4902 120095064 python3-cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb Checksums-Sha256: 84bbdc36dad4dd8cb8330a19be03ab173b333a4f80497f05daddf03ba1451e45 23044 cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.buildinfo ae8762451e7f25f9becea0c7d234c3eb40c4c98f8427d4b07232246a5721db11 1174832 libcctbx-dev_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 357d65e7f036175e55e70e62f813bbe39397a74155ed2aebfd5938138da11d4c 9790456 libcctbx0-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 7aebbc6bcad66809811d2247bfa5bc1826654bf18bea36418609a4d1fad3de28 2364364 libcctbx0_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 121713d5aafcb9f4acfe5754b6b4ff64ea9615fd5f10888a058df613aa3e8008 145642908 python3-cctbx-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 791114708fba61511bed0539d1c75e5cbf8c7c45ad81675410f96bd469d363bf 120095064 python3-cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb Files: 1166c2b88db0d0867d70c21528987cf3 23044 science optional cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.buildinfo c570d4b2c9d1b5efa1b92d9cb16f0345 1174832 libdevel optional libcctbx-dev_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 219cfddbd0e4a73648f0e8e885b09d2e 9790456 debug optional libcctbx0-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 86fac1fd37808d1af128698c5f8921d2 2364364 libs optional libcctbx0_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 09be703a7531e1c127e9df2e50333f1f 145642908 debug optional python3-cctbx-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb b11c3a1c1b0e9502dc8e92dc6555d4d6 120095064 python optional python3-cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo Sat, 12 Sep 2026 07:50:06 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: cctbx (2026.7+ds2+~3.30.0+ds1-3) Binary: libcctbx-dev libcctbx0 libcctbx0-dbgsym python3-cctbx python3-cctbx-dbgsym Architecture: ppc64el Version: 2026.7+ds2+~3.30.0+ds1-3+b1 Binary-Only-Changes: cctbx (2026.7+ds2+~3.30.0+ds1-3+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for ppc64el; no source changes. * Rebuild with Python 3.14 only . -- ppc64el Build Daemon (ppc64el-conova-01) Wed, 02 Sep 2026 01:55:56 +0000 Checksums-Md5: c570d4b2c9d1b5efa1b92d9cb16f0345 1174832 libcctbx-dev_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 219cfddbd0e4a73648f0e8e885b09d2e 9790456 libcctbx0-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 86fac1fd37808d1af128698c5f8921d2 2364364 libcctbx0_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 09be703a7531e1c127e9df2e50333f1f 145642908 python3-cctbx-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb b11c3a1c1b0e9502dc8e92dc6555d4d6 120095064 python3-cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb Checksums-Sha1: 64a9a5043bebb65093384412f7d02f8e430e1b99 1174832 libcctbx-dev_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb fa5c01cbd2edc3a187d844264a7354070b066033 9790456 libcctbx0-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 464a3fbdf0a46b7a56b7739822f737bf172e6c96 2364364 libcctbx0_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 444051d7f2da5196cfa1a013ad24c2d7b7f81a7a 145642908 python3-cctbx-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 78919a2ebab5dab343fc0ea98fdcdca2b1df4902 120095064 python3-cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb Checksums-Sha256: ae8762451e7f25f9becea0c7d234c3eb40c4c98f8427d4b07232246a5721db11 1174832 libcctbx-dev_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 357d65e7f036175e55e70e62f813bbe39397a74155ed2aebfd5938138da11d4c 9790456 libcctbx0-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 7aebbc6bcad66809811d2247bfa5bc1826654bf18bea36418609a4d1fad3de28 2364364 libcctbx0_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 121713d5aafcb9f4acfe5754b6b4ff64ea9615fd5f10888a058df613aa3e8008 145642908 python3-cctbx-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb 791114708fba61511bed0539d1c75e5cbf8c7c45ad81675410f96bd469d363bf 120095064 python3-cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb Build-Origin: Debian Build-Architecture: ppc64el Build-Date: Sat, 12 Sep 2026 07:50:02 +0000 Build-Path: /build/reproducible-path/cctbx-2026.7+ds2+~3.30.0+ds1 Installed-Build-Depends: adwaita-icon-theme (= 50.0-2), architecture-properties (= 0.2.6+b2), at-spi2-common (= 2.61.90-1), autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-3), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3+b1), binutils (= 2.47-2), binutils-common (= 2.47-2), binutils-powerpc64le-linux-gnu (= 2.47-2), bsdextrautils (= 2.42.2-4), bubblewrap (= 0.12.0-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), ca-certificates (= 20260816), comerr-dev (= 2.1-1.47.4-1+b1), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-1), cpp-16-powerpc64le-linux-gnu (= 16.2.0-1), cpp-powerpc64le-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12), dbus (= 1.16.2-5+b1), dbus-bin (= 1.16.2-5+b1), dbus-daemon (= 1.16.2-5+b1), dbus-session-bus-common (= 1.16.2-5), dbus-system-bus-common (= 1.16.2-5), dbus-user-session (= 1.16.2-5+b1), dconf-gsettings-backend (= 0.49.0-4+b1), dconf-service (= 0.49.0-4+b1), debconf (= 1.5.92), debhelper (= 14.3), debianutils (= 5.24), dh-autoreconf (= 22), dh-exec (= 0.31), dh-python (= 7.20260623), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.17-1), fftw-dev (= 2.1.5-8), fftw2 (= 2.1.5-8), file (= 1:5.47-4), findutils (= 4.11.0-2), fontconfig (= 2.17.1-5), fontconfig-config (= 2.17.1-5), fonts-dejavu-core (= 2.37-9), fonts-dejavu-extra (= 2.37-9), fonts-dejavu-mono (= 2.37-9), fonts-font-awesome (= 7.3.0+dfsg-1), fonts-font-awesome-legacy (= 6-3), fonts-lato (= 2.015-1), fonts-lyx (= 2.5.2-1), fonts-urw-base35 (= 20200910-9), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-1), g++-16-powerpc64le-linux-gnu (= 16.2.0-1), g++-powerpc64le-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-1), gcc-16-base (= 16.2.0-1), gcc-16-powerpc64le-linux-gnu (= 16.2.0-1), gcc-powerpc64le-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-3), gettext-base (= 1.0-3), glycin-loaders (= 2.1.5+ds-2), glycin-thumbnailers (= 2.1.5+ds-2), grep (= 3.12-1), groff-base (= 1.24.1-1), gtk-update-icon-cache (= 4.22.4+ds-1), gzip (= 1.14-1), hdf5-helpers (= 2.2.0+repack-4), hicolor-icon-theme (= 0.18-2), hostname (= 3.25), ibverbs-providers (= 64.0-1), init-system-helpers (= 1.69+nmu1), intltool-debian (= 0.35.0+20060710.6), jq (= 1.8.2-1), krb5-multidev (= 1.22.1-3), libabsl20260526 (= 20260526.0-2), libacl1 (= 2.4.0-1), libaec-dev (= 1.1.7-1), libaec0 (= 1.1.7-1), libamd-comgr3 (= 7.0.2+dfsg-3), libamdhip64-6 (= 6.4.3-5), libann-cctbx-dev (= 1.1.2+doc-9+b1), libann-cctbx0 (= 1.1.2+doc-9+b1), libantlr3c-3.4-0 (= 3.4+dfsg-4+b3), libantlr3c-dev (= 3.4+dfsg-4+b3), libaom3 (= 3.14.1-1), libapparmor1 (= 4.1.8-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-1), libasound2-data (= 1.2.16.1-1), libasound2t64 (= 1.2.16.1-1), libasyncns0 (= 0.8-8), libatk-bridge2.0-0t64 (= 2.61.90-1), libatk1.0-0t64 (= 2.61.90-1), libatomic1 (= 16.2.0-1), libatspi2.0-0t64 (= 2.61.90-1), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libavahi-client3 (= 0.8-18), libavahi-common-data (= 0.8-18), libavahi-common3 (= 0.8-18), libavif16 (= 1.4.2-1), libbinutils (= 2.47-2), libblas3 (= 3.12.1-8), libblkid1 (= 2.42.2-4), libboost-atomic1.90-dev (= 1.90.0-6.1), libboost-atomic1.90.0 (= 1.90.0-6.1), libboost-chrono1.90-dev (= 1.90.0-6.1), libboost-chrono1.90.0 (= 1.90.0-6.1), libboost-container1.90-dev (= 1.90.0-6.1), libboost-container1.90.0 (= 1.90.0-6.1), libboost-date-time1.90-dev (= 1.90.0-6.1), libboost-date-time1.90.0 (= 1.90.0-6.1), libboost-dev (= 1.90.0.2+nmu1), libboost-exception1.90-dev (= 1.90.0-6.1), libboost-graph1.90-dev (= 1.90.0-6.1), libboost-graph1.90.0 (= 1.90.0-6.1), libboost-numpy-dev (= 1.90.0.2+nmu1), libboost-numpy1.90-dev (= 1.90.0-6.1), libboost-numpy1.90.0 (= 1.90.0-6.1), libboost-python-dev (= 1.90.0.2+nmu1), libboost-python1.90-dev (= 1.90.0-6.1), libboost-python1.90.0 (= 1.90.0-6.1), libboost-regex1.90-dev (= 1.90.0-6.1), libboost-regex1.90.0 (= 1.90.0-6.1), libboost-serialization1.90-dev (= 1.90.0-6.1), libboost-serialization1.90.0 (= 1.90.0-6.1), libboost-test1.90-dev (= 1.90.0-6.1), libboost-test1.90.0 (= 1.90.0-6.1), libboost-thread-dev (= 1.90.0.2+nmu1), libboost-thread1.90-dev (= 1.90.0-6.1), libboost-thread1.90.0 (= 1.90.0-6.1), libboost-timer-dev (= 1.90.0.2+nmu1), libboost-timer1.90-dev (= 1.90.0-6.1), libboost-timer1.90.0 (= 1.90.0-6.1), libboost1.90-dev (= 1.90.0-6.1), libbrotli-dev (= 1.2.0-4), libbrotli1 (= 1.2.0-4), libbsd0 (= 0.12.2-3), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-4), libc-dev-bin (= 2.43-4), libc-gconv-modules-extra (= 2.43-4), libc6 (= 2.43-4), libc6-dev (= 2.43-4), libcairo-gobject2 (= 1.18.4-3+b1), libcairo2 (= 1.18.4-3+b1), libcap-ng0 (= 0.9.5-1), libcap2 (= 1:2.78-1+b1), libcbf-dev (= 0.9.7+dfsg1-5.1+b2), libcbf1t64 (= 0.9.7+dfsg1-5.1+b2), libcc1-0 (= 16.2.0-1), libccp4-data (= 8.0.0-5), libccp4-dev (= 8.0.0-5+b1), libccp4c0t64 (= 8.0.0-5+b1), libccp4f0t64 (= 8.0.0-5+b1), libclang-common-21-dev (= 1:21.1.8-10), libclipper-dev (= 2.1.20201109-2+b4), libclipper2 (= 2.1.20201109-2+b4), libcloudproviders0 (= 0.4.1-1), libcolord2 (= 1.4.8-3), libcom-err2 (= 1.47.4-1+b1), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-2), libctf0 (= 2.47-2), libcups2t64 (= 2.4.18-1), libcurl4-gnutls (= 8.22.0~rc3-1), libcurl4-openssl-dev (= 8.22.0~rc3-1), libcurl4t64 (= 8.22.0~rc3-1), libdatrie1 (= 0.2.14-2), libdav1d7 (= 1.5.4-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdbus-1-3 (= 1.16.2-5+b1), libdconf1 (= 0.49.0-4+b1), libde265-0 (= 1.1.1-1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdecor-0-0 (= 0.2.5-1+b1), libdeflate-dev (= 1.25-1), libdeflate0 (= 1.25-1), libdouble-conversion3 (= 3.4.0-1+b1), libdpkg-perl (= 1.23.7), libdrm-amdgpu1 (= 2.4.134-3), libdrm-common (= 2.4.134-3), libdrm2 (= 2.4.134-3), libedit2 (= 3.1-20260512-1), libegl-mesa0 (= 26.1.6-1), libegl1 (= 1.7.0-3+b1), libeigen3-dev (= 3.4.0-5), libelf1t64 (= 0.196-1), libepoxy0 (= 1.5.10-2+b2), libesmtp6 (= 1.1.0-3.2+b2), libevdev2 (= 1.13.7+dfsg-1), libevent-2.1-7t64 (= 2.1.13-stable-1), libevent-core-2.1-7t64 (= 2.1.13-stable-1), libevent-pthreads-2.1-7t64 (= 2.1.13-stable-1), libexpat1 (= 2.8.4-1), libexpat1-dev (= 2.8.4-1), libfabric1 (= 2.1.0-1.1+b2), libffi8 (= 3.8.0-2), libfftw3-bin (= 3.3.11-1), libfftw3-dev (= 3.3.11-1), libfftw3-double3 (= 3.3.11-1), libfftw3-long3 (= 3.3.11-1), libfftw3-single3 (= 3.3.11-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libflac14 (= 1.5.0+ds-5+b1), libfontconfig1 (= 2.17.1-5), libfontenc1 (= 1:1.1.8-1+b3), libfreetype6 (= 2.14.3+dfsg-2), libfribidi0 (= 1.0.16-5+b1), libfuse3-4 (= 3.18.2-2), libgav1-2 (= 0.20.0-2+b2), libgbm1 (= 26.1.6-1), libgcc-16-dev (= 16.2.0-1), libgcc-s1 (= 16.2.0-1), libgcrypt20 (= 1.12.2-1), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgdk-pixbuf-2.0-0 (= 2.44.7+dfsg-1), libgdk-pixbuf2.0-common (= 2.44.7+dfsg-1), libgfortran5 (= 16.2.0-1), libgl-dev (= 1.7.0-3+b1), libgl1 (= 1.7.0-3+b1), libgl1-mesa-dri (= 26.1.6-1), libgles2 (= 1.7.0-3+b1), libglew2.3 (= 2.3.1+dfsg2-5), libglib2.0-0t64 (= 2.89.4-2), libglu1-mesa (= 9.0.2-1.1+b4), libglu1-mesa-dev (= 9.0.2-1.1+b4), libglut3.12 (= 3.4.0-6+b2), libglvnd0 (= 1.7.0-3+b1), libglx-dev (= 1.7.0-3+b1), libglx-mesa0 (= 26.1.6-1), libglx0 (= 1.7.0-3+b1), libglycin-2-0 (= 2.1.5+ds-2), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-1), libgpg-error0 (= 1.61-5), libgraphite2-3 (= 1.3.15-2), libgssapi-krb5-2 (= 1.22.1-3), libgssrpc4t64 (= 1.22.1-3), libgtk-3-0t64 (= 3.24.52-1), libgtk-3-common (= 3.24.52-1), libgudev-1.0-0 (= 238-7+b2), libharfbuzz-subset0 (= 12.3.2-2+b2), libharfbuzz0b (= 12.3.2-2+b2), libhdf5-320 (= 2.2.0+repack-4), libhdf5-cpp-320 (= 2.2.0+repack-4), libhdf5-dev (= 2.2.0+repack-4), libhdf5-fortran-320 (= 2.2.0+repack-4), libhdf5-hl-320 (= 2.2.0+repack-4), libhdf5-hl-cpp-320 (= 2.2.0+repack-4), libhdf5-hl-fortran-320 (= 2.2.0+repack-4), libheif-plugin-dav1d (= 1.23.2-1), libheif-plugin-libde265 (= 1.23.2-1), libheif1 (= 1.23.2-1), libhogweed6t64 (= 3.10.2-1+b1), libhsa-runtime64-1 (= 6.4.3+dfsg-5), libhwloc-plugins (= 2.14.0-2), libhwloc15 (= 2.14.0-2), libhwy1t64 (= 1.3.0-5.1), libibmad5 (= 64.0-1), libibumad3 (= 64.0-1), libibverbs1 (= 64.0-1), libice6 (= 2:1.1.1-1+b2), libicu78 (= 78.3-2), libidn2-0 (= 2.3.8-5), libidn2-dev (= 2.3.8-5), libimagequant0 (= 4.4.1-1+b2), libinput-bin (= 1.31.3-1), libinput10 (= 1.31.3-1), libisl23 (= 0.28-1), libitm1 (= 16.2.0-1), libjansson4 (= 2.15.1-1), libjbig-dev (= 2.1-6.1+b3), libjbig0 (= 2.1-6.1+b3), libjpeg-dev (= 1:3.1.3-4), libjpeg62-turbo (= 1:3.1.3-4), libjpeg62-turbo-dev (= 1:3.1.3-4), libjq1 (= 1.8.2-1), libjs-jquery (= 3.7.1+dfsg+~3.5.33-1), libjs-sphinxdoc (= 9.1.0-7), libjxl0.11 (= 0.11.2-5.1), libk5crypto3 (= 1.22.1-3), libkadm5clnt-mit12 (= 1.22.1-3), libkadm5srv-mit12 (= 1.22.1-3), libkdb5-10t64 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5-dev (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), liblapack3 (= 3.12.1-8), liblcms2-2 (= 2.19.1-1), libldap-dev (= 2.6.14+dfsg-2), libldap2 (= 2.6.14+dfsg-2), liblerc-dev (= 4.2.0+ds-1), liblerc4 (= 4.2.0+ds-1), libllvm21 (= 1:21.1.8-10), liblsan0 (= 16.2.0-1), liblz4-1 (= 1.10.0-10), liblz4-dev (= 1.10.0-10), liblzf1 (= 3.6-4+b4), liblzma-dev (= 5.8.3-1), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmd4c0 (= 0.5.3-1), libmmdb2-0 (= 2.0.22-1+b3), libmmdb2-dev (= 2.0.22-1+b3), libmount1 (= 2.42.2-4), libmp3lame0 (= 4.0-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libmpg123-0t64 (= 1.33.7-1), libmtdev1t64 (= 1.1.7-1+b2), libmunge2 (= 0.5.18-1), libncursesw6 (= 6.6+20260608-2), libnetcdf22 (= 1:4.10.1-1+b1), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp2-dev (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libnghttp3-dev (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libngtcp2-crypto-ossl-dev (= 1.24.0-1), libngtcp2-crypto-ossl0 (= 1.24.0-1), libngtcp2-dev (= 1.24.0-1), libnl-3-200 (= 3.12.0-2+b1), libnl-route-3-200 (= 3.12.0-2+b1), libnotify4 (= 0.8.8-1+b1), libnuma1 (= 2.0.19-1+b2), libogg0 (= 1.3.6-2+b1), libonig5 (= 6.9.10-1+b1), libopengl-dev (= 1.7.0-3+b1), libopengl0 (= 1.7.0-3+b1), libopenjp2-7 (= 2.5.4-1.1), libopenmpi40 (= 5.0.10-5), libopus0 (= 1.6.1-1+b1), libp11-kit-dev (= 0.26.5-1), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam-systemd (= 262~rc1-2), libpam0g (= 1.7.0-8), libpango-1.0-0 (= 1.58.0-1), libpangocairo-1.0-0 (= 1.58.0-1), libpangoft2-1.0-0 (= 1.58.0-1), libpciaccess0 (= 0.19-2), libpcre2-16-0 (= 10.48-2), libpcre2-32-0 (= 10.48-2), libpcre2-8-0 (= 10.48-2), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpixman-1-0 (= 0.46.4-1+b2), libpkgconf7 (= 2.5.1-4), libpmix2t64 (= 6.1.1~rc2-4), libpng16-16t64 (= 1.6.58-1), libpopt0 (= 1.19+dfsg-2+b2), libproc2-1 (= 2:4.0.7-1), libpsl-dev (= 0.23.3-1), libpsl5t64 (= 0.23.3-1), libpulse0 (= 17.0+dfsg1-3), libpython3-all-dev (= 3.14.7-3), libpython3-dev (= 3.14.7-3), libpython3-stdlib (= 3.14.7-3), libpython3.14 (= 3.14.7-1), libpython3.14-dev (= 3.14.7-1), libpython3.14-minimal (= 3.14.7-1), libpython3.14-stdlib (= 3.14.7-1), libqhull-r8.0 (= 2020.2-9), libqt5core5t64 (= 5.15.19+dfsg-4), libqt5dbus5t64 (= 5.15.19+dfsg-4), libqt5designer5 (= 5.15.19-2), libqt5gui5t64 (= 5.15.19+dfsg-4), libqt5help5 (= 5.15.19-2), libqt5network5t64 (= 5.15.19+dfsg-4), libqt5opengl5t64 (= 5.15.19+dfsg-4), libqt5printsupport5t64 (= 5.15.19+dfsg-4), libqt5sql5t64 (= 5.15.19+dfsg-4), libqt5test5t64 (= 5.15.19+dfsg-4), libqt5widgets5t64 (= 5.15.19+dfsg-4), libqt5xml5t64 (= 5.15.19+dfsg-4), libquadmath0 (= 16.2.0-1), libraqm0 (= 0.10.5-1), librav1e0.8 (= 0.8.1-11), librdmacm1t64 (= 64.0-1), libreadline8t64 (= 8.3-4), librsvg2-2 (= 2.62.1+dfsg-1), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libsdl2-2.0-0 (= 2.32.70+ds-2), libsdl3-0 (= 3.4.14+ds-2), libseccomp2 (= 2.6.1-1), libselinux1 (= 3.11-2), libsensors-config (= 1:3.6.2-2), libsensors5 (= 1:3.6.2-2+b2), libsframe3 (= 2.47-2), libsharpyuv-dev (= 1.5.0-0.1+b2), libsharpyuv0 (= 1.5.0-0.1+b2), libsm6 (= 2:1.2.6-1+b2), libsmartcols1 (= 2.42.2-4), libsndfile1 (= 1.2.2-4+b1), libsqlite3-0 (= 3.53.4-2), libssh2-1-dev (= 1.11.1-6), libssh2-1t64 (= 1.11.1-6), libssl-dev (= 3.6.4-1), libssl3t64 (= 3.6.4-1), libssm-dev (= 1.4.0-2+b4), libssm2 (= 1.4.0-2+b4), libstdc++-16-dev (= 16.2.0-1), libstdc++6 (= 16.2.0-1), libsvtav1enc4 (= 4.1.0+dfsg-1), libsystemd-shared (= 262~rc1-2), libsystemd0 (= 262~rc1-2), libsz2 (= 1.1.7-1), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtcl8.6 (= 8.6.18+dfsg-1), libthai-data (= 0.1.30-3), libthai0 (= 0.1.30-3), libtiff-dev (= 4.7.2-1), libtiff6 (= 4.7.2-1), libtiffxx6 (= 4.7.2-1), libtinfo6 (= 6.6+20260608-2), libtk8.6 (= 8.6.18-1), libtool (= 2.6.2-2), libtsan2 (= 16.2.0-1), libubsan1 (= 16.2.0-1), libucc1 (= 1.8.0-2), libuchardet0 (= 0.0.8-2+b2), libucx0 (= 1.22.0-1), libudev1 (= 262~rc1-2), libunbound8 (= 1.26.0-2), libunistring-dev (= 1.4.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.2-4), libvorbis0a (= 1.3.7-3+b2), libvorbisenc2 (= 1.3.7-3+b2), libvulkan1 (= 1.4.357.0-1), libwacom-common (= 2.18.0-1), libwacom9 (= 2.18.0-1), libwayland-client0 (= 1.26.0-1), libwayland-cursor0 (= 1.26.0-1), libwayland-egl1 (= 1.26.0-1), libwebp-dev (= 1.5.0-0.1+b2), libwebp7 (= 1.5.0-0.1+b2), libwebpdecoder3 (= 1.5.0-0.1+b2), libwebpdemux2 (= 1.5.0-0.1+b2), libwebpmux3 (= 1.5.0-0.1+b2), libwxbase3.2-1t64 (= 3.2.11+dfsg-1), libwxgtk-gl3.2-1t64 (= 3.2.11+dfsg-1), libwxgtk3.2-1t64 (= 3.2.11+dfsg-1), libx11-6 (= 2:1.8.13-1), libx11-data (= 2:1.8.13-1), libx11-dev (= 2:1.8.13-1), libx11-xcb1 (= 2:1.8.13-1), libxau-dev (= 1:1.0.11-1+b2), libxau6 (= 1:1.0.11-1+b2), libxcb-dri3-0 (= 1.17.0-2+b2), libxcb-glx0 (= 1.17.0-2+b2), libxcb-icccm4 (= 0.4.2-1+b2), libxcb-image0 (= 0.4.0-2+b3), libxcb-keysyms1 (= 0.4.1-1+b2), libxcb-present0 (= 1.17.0-2+b2), libxcb-randr0 (= 1.17.0-2+b2), libxcb-render-util0 (= 0.3.10-1+b2), libxcb-render0 (= 1.17.0-2+b2), libxcb-shape0 (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb-sync1 (= 1.17.0-2+b2), libxcb-util1 (= 0.4.1-1+b2), libxcb-xfixes0 (= 1.17.0-2+b2), libxcb-xinerama0 (= 1.17.0-2+b2), libxcb-xinput0 (= 1.17.0-2+b2), libxcb-xkb1 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxcb1-dev (= 1.17.0-2+b2), libxcomposite1 (= 1:0.4.6-1+b2), libxcursor1 (= 1:1.2.3-1+b2), libxdamage1 (= 1:1.1.7-1+b1), libxdmcp-dev (= 1:1.1.5-2+b1), libxdmcp6 (= 1:1.1.5-2+b1), libxext6 (= 2:1.3.4-1+b4), libxfixes3 (= 1:6.0.0-2+b5), libxft2 (= 2.3.6-1+b5), libxi6 (= 2:1.8.3-1), libxinerama1 (= 2:1.1.4-3+b5), libxkbcommon-x11-0 (= 1.13.1-1), libxkbcommon0 (= 1.13.1-1), libxml2-16 (= 2.15.3+dfsg-1), libxnvctrl0 (= 535.171.04-1+b3), libxrandr2 (= 2:1.5.4-1+b4), libxrender1 (= 1:0.9.12-1+b2), libxres1 (= 2:1.2.1-2), libxshmfence1 (= 1.3.3-1+b2), libxslt1.1 (= 1.1.45-0.1), libxss1 (= 1:1.2.3-1+b4), libxtst6 (= 2:1.2.5-1+b2), libxxf86vm1 (= 1:1.1.4-2+b1), libxxhash-dev (= 0.8.3-2+b2), libxxhash0 (= 0.8.3-2+b2), libyaml-0-2 (= 0.2.5-2+b1), libyuv0 (= 0.0.1959.20260817-1), libz3-4 (= 4.13.3-1.1), libzopfli1 (= 1.0.3-3), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.1.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), mesa-libgallium (= 26.1.6-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), netbase (= 6.6), nettle-dev (= 3.10.2-1+b1), ocl-icd-libopencl1 (= 2.3.4-1+b1), openssl (= 3.6.4-1), openssl-provider-legacy (= 3.6.4-1), patch (= 2.8-2), pci.ids (= 0.0~2026.07.21-1), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pkg-config (= 2.5.1-4), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), procps (= 2:4.0.7-1), pybind11-dev (= 3.0.1-3), pybuild-plugin-pyproject (= 7.20260623), pymol-data (= 3.1.0+dfsg-1), python-matplotlib-data (= 3.10.9+dfsg1-1), python3 (= 3.14.7-3), python3-all (= 3.14.7-3), python3-all-dev (= 3.14.7-3), python3-attr (= 26.1.0-1), python3-autocommand (= 2.2.2-4), python3-biopython (= 1.88+dfsg-2), python3-brotli (= 1.2.0-4), python3-build (= 1.5.1-1), python3-cairo (= 1.29.0-1), python3-certifi (= 2026.7.22+ds-1), python3-chardet (= 5.2.0+dfsg-2), python3-charset-normalizer (= 3.4.7-2), python3-contourpy (= 1.3.3-2), python3-cycler (= 0.12.1-3), python3-dateutil (= 2.9.0-5), python3-decorator (= 5.3.1-1), python3-dev (= 3.14.7-3), python3-editables (= 0.5-3), python3-flexcache (= 0.3-3), python3-flexparser (= 0.4-2), python3-fonttools (= 4.62.1-7), python3-freetype (= 2.5.1-3), python3-h5py (= 3.16.0-6), python3-h5py-serial (= 3.16.0-6), python3-hatchling (= 1.30.1-2), python3-hdf5plugin (= 5.1.0-1), python3-idna (= 3.19-1), python3-inflect (= 7.5.0-2), python3-iniconfig (= 2.1.0-2), python3-installer (= 1.0.1+dfsg1-2), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-kiwisolver (= 1.5.0-2), python3-legacy-cgi (= 2.6.4-3), python3-lxml (= 6.1.0-1), python3-lz4 (= 4.4.5+dfsg-1), python3-matplotlib (= 3.10.9+dfsg1-1), python3-minimal (= 3.14.7-3), python3-more-itertools (= 11.1.0-2), python3-mpmath (= 1.4.1-3), python3-mrcfile (= 1.5.4-4), python3-msgpack (= 1.1.2-4), python3-natsort (= 8.4.0-2), python3-numpy (= 1:2.4.6+ds-4), python3-numpy-dev (= 1:2.4.6+ds-4), python3-nxmx (= 0.0.7-1), python3-opengl (= 3.1.10+dfsg-1), python3-ordered-set (= 4.1.0-1), python3-packaging (= 26.2-2), python3-pathspec (= 1.1.1-2), python3-pil (= 12.3.0-1), python3-pil.imagetk (= 12.3.0-1), python3-pint (= 0.25.3-4), python3-pip (= 26.1.2+dfsg-1), python3-pkg-resources (= 80.9.0-2), python3-platformdirs (= 4.10.0-1), python3-pluggy (= 1.6.0-2), python3-procrunner (= 2.3.3-2), python3-psutil (= 7.1.0-1), python3-pycbf (= 0.9.7+dfsg1-5.1+b2), python3-pygments (= 2.20.0+dfsg-2), python3-pymol (= 3.1.0+dfsg-1+b3), python3-pyparsing (= 3.3.2-2), python3-pyproject-hooks (= 1.2.0-2), python3-pyqt5 (= 5.15.11+dfsg-6), python3-pyqt5.qtopengl (= 5.15.11+dfsg-6), python3-pyqt5.sip (= 12.19.0-1), python3-pytest (= 9.1.1-1), python3-reportlab (= 5.0.0-4), python3-requests (= 2.34.2-1), python3-rlpycairo (= 0.3.0-4), python3-scipy (= 1.17.1-5), python3-setuptools (= 80.9.0-2), python3-six (= 1.17.0-3), python3-sympy (= 1.14.0-4), python3-tk (= 3.14.7-3), python3-tqdm (= 4.70.0-1), python3-trove-classifiers (= 2026.1.14.14-1), python3-typeguard (= 4.4.4-3), python3-typing-extensions (= 4.16.0-5), python3-ufolib2 (= 0.18.1+dfsg1-2), python3-uharfbuzz (= 0.53.3-1), python3-urllib3 (= 2.7.0-3), python3-wheel (= 0.47.0-1), python3-wxgtk4.0 (= 4.2.4+dfsg-1), python3-yaml (= 6.0.3-1), python3-zipp (= 3.23.0-1), python3-zopfli (= 0.4.3-2), python3.14 (= 3.14.7-1), python3.14-dev (= 3.14.7-1), python3.14-minimal (= 3.14.7-1), python3.14-tk (= 3.14.7-1), readline-common (= 8.3-4), rsync (= 3.5.0+ds1-2), scons (= 4.10.1+dfsg-2), sed (= 4.9-3), sensible-utils (= 0.0.26), sfftw-dev (= 2.1.5-8), sfftw2 (= 2.1.5-8), sgml-base (= 1.31+nmu1), shared-mime-info (= 2.4-5+b3), sphinx-rtd-theme-common (= 3.1.0+dfsg-2), systemd (= 262~rc1-2), systemd-sysv (= 262~rc1-2), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-5), tzdata (= 2026c-1), unicode-data (= 17.0.0-2), util-linux (= 2.42.2-4), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+26), x11proto-dev (= 2025.1-1), xfonts-encodings (= 1:1.0.4-2.2), xfonts-utils (= 1:7.7+7), xkb-data (= 2.48-1), xml-core (= 0.21), xorg-sgml-doctools (= 1:1.12.1-1), xtrans-dev (= 1.6.0-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1788314156" +------------------------------------------------------------------------------+ | Package contents Sat, 12 Sep 2026 07:50:06 +0000 | +------------------------------------------------------------------------------+ libcctbx-dev_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb ---------------------------------------------------- new Debian package, version 2.0. size 1174832 bytes: control archive=23608 bytes. 2992 bytes, 55 lines control 64544 bytes, 837 lines md5sums Package: libcctbx-dev Source: cctbx (2026.7+ds2+~3.30.0+ds1-3) Version: 2026.7+ds2+~3.30.0+ds1-3+b1 Architecture: ppc64el Maintainer: Debian Science Maintainers Installed-Size: 8691 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2026.7+ds2+~3.30.0+ds1-3+b1) Section: libdevel Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - headers Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide everything needed to link against the cctbx libraries. drwxr-xr-x root/root 0 2026-09-02 01:55 ./ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/annlib_adaptbx/ -rw-r--r-- root/root 2068 2026-09-02 01:55 ./usr/include/annlib_adaptbx/ann_adaptor.h drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/boost_adaptbx/ -rw-r--r-- root/root 933 2026-08-01 11:52 ./usr/include/boost_adaptbx/boost_range_python.hpp -rw-r--r-- root/root 930 2026-08-01 11:52 ./usr/include/boost_adaptbx/convertible.h -rw-r--r-- root/root 3412 2026-08-01 11:52 ./usr/include/boost_adaptbx/exporting.hpp -rw-r--r-- root/root 3770 2026-08-01 11:52 ./usr/include/boost_adaptbx/floating_point_exceptions.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/boost_adaptbx/graph/ -rw-r--r-- root/root 1588 2026-08-01 11:52 ./usr/include/boost_adaptbx/graph/graph_export_adaptor.hpp -rw-r--r-- 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root/root 3535 2026-08-01 11:52 ./usr/include/cctbx/maptbx/histogram.h -rw-r--r-- root/root 23419 2026-08-01 11:52 ./usr/include/cctbx/maptbx/interpolation.h -rw-r--r-- root/root 8408 2026-08-01 11:52 ./usr/include/cctbx/maptbx/loft.h -rw-r--r-- root/root 11439 2026-08-01 11:52 ./usr/include/cctbx/maptbx/map_accumulator.h -rw-r--r-- root/root 1472 2026-08-01 11:52 ./usr/include/cctbx/maptbx/marked_grid_points.h -rw-r--r-- root/root 2485 2026-08-01 11:52 ./usr/include/cctbx/maptbx/mask.h -rw-r--r-- root/root 4847 2026-08-01 11:52 ./usr/include/cctbx/maptbx/mask_utils.h -rw-r--r-- root/root 205 2026-08-01 11:52 ./usr/include/cctbx/maptbx/namespace.h -rw-r--r-- root/root 14329 2026-08-01 11:52 ./usr/include/cctbx/maptbx/peak_search.h -rw-r--r-- root/root 2058 2026-08-01 11:52 ./usr/include/cctbx/maptbx/resolution.h -rw-r--r-- root/root 2100 2026-08-01 11:52 ./usr/include/cctbx/maptbx/skeletons.h -rw-r--r-- root/root 3525 2026-08-01 11:52 ./usr/include/cctbx/maptbx/sphericity.h -rw-r--r-- root/root 2237 2026-08-01 11:52 ./usr/include/cctbx/maptbx/standard_deviations_around_sites.hpp -rw-r--r-- root/root 7885 2026-08-01 11:52 ./usr/include/cctbx/maptbx/statistics.h -rw-r--r-- root/root 15138 2026-08-01 11:52 ./usr/include/cctbx/maptbx/structure_factors.h -rw-r--r-- root/root 21027 2026-08-01 11:52 ./usr/include/cctbx/maptbx/target_and_gradients.h -rw-r--r-- root/root 46141 2026-08-01 11:52 ./usr/include/cctbx/maptbx/utils.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/cctbx/masks/ -rw-r--r-- root/root 14960 2026-08-01 11:52 ./usr/include/cctbx/masks/around_atoms.h -rw-r--r-- root/root 6868 2026-08-01 11:52 ./usr/include/cctbx/masks/flood_fill.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/cctbx/math/ -rw-r--r-- root/root 1087 2026-08-01 11:52 ./usr/include/cctbx/math/array_utils.h -rw-r--r-- root/root 5836 2026-08-01 11:52 ./usr/include/cctbx/math/cos_sin_table.h -rw-r--r-- root/root 1439 2026-08-01 11:52 ./usr/include/cctbx/math/loop_n_from_m.h -rw-r--r-- root/root 579 2026-08-01 11:52 ./usr/include/cctbx/math/mod.h -rw-r--r-- root/root 3845 2026-08-01 11:52 ./usr/include/cctbx/miller.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/cctbx/miller/ -rw-r--r-- root/root 2269 2026-08-01 11:52 ./usr/include/cctbx/miller/amplitude_normalisation.h -rw-r--r-- root/root 9005 2026-08-01 11:52 ./usr/include/cctbx/miller/asu.h -rw-r--r-- root/root 6314 2026-08-01 11:52 ./usr/include/cctbx/miller/bins.h -rw-r--r-- root/root 1917 2026-08-01 11:52 ./usr/include/cctbx/miller/change_basis.h -rw-r--r-- root/root 7029 2026-08-01 11:52 ./usr/include/cctbx/miller/expand_to_p1.h -rw-r--r-- root/root 4463 2026-08-01 11:52 ./usr/include/cctbx/miller/f_calc_map.h -rw-r--r-- root/root 3823 2026-08-01 11:52 ./usr/include/cctbx/miller/index_generator.h -rw-r--r-- root/root 2578 2026-08-01 11:52 ./usr/include/cctbx/miller/index_span.h -rw-r--r-- root/root 12427 2026-08-01 11:52 ./usr/include/cctbx/miller/lookup_utils.h -rw-r--r-- root/root 2185 2026-08-01 11:52 ./usr/include/cctbx/miller/match.h -rw-r--r-- root/root 3514 2026-08-01 11:52 ./usr/include/cctbx/miller/match_bijvoet_mates.h -rw-r--r-- root/root 4089 2026-08-01 11:52 ./usr/include/cctbx/miller/match_indices.h -rw-r--r-- root/root 1351 2026-08-01 11:52 ./usr/include/cctbx/miller/match_multi_indices.h -rw-r--r-- root/root 1278 2026-08-01 11:52 ./usr/include/cctbx/miller/math.h -rw-r--r-- root/root 22970 2026-08-01 11:52 ./usr/include/cctbx/miller/merge_equivalents.h -rw-r--r-- root/root 8142 2026-08-01 11:52 ./usr/include/cctbx/miller/phase_integrator.h -rw-r--r-- root/root 2617 2026-08-01 11:52 ./usr/include/cctbx/miller/phase_transfer.h -rw-r--r-- root/root 1552 2026-08-01 11:52 ./usr/include/cctbx/miller/randomize_amplitude_and_phase.h -rw-r--r-- root/root 1216 2026-08-01 11:52 ./usr/include/cctbx/miller/slices.h -rw-r--r-- root/root 11625 2026-08-01 11:52 ./usr/include/cctbx/miller/sym_equiv.h -rw-r--r-- root/root 818 2026-08-01 11:52 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2026-08-01 11:52 ./usr/include/cctbx/sgtbx/miller_ops.h -rw-r--r-- root/root 1388 2026-08-01 11:52 ./usr/include/cctbx/sgtbx/operator_from_axis_direction.h -rw-r--r-- root/root 2961 2026-08-01 11:52 ./usr/include/cctbx/sgtbx/parse_string.h -rw-r--r-- root/root 5057 2026-08-01 11:52 ./usr/include/cctbx/sgtbx/phase_info.h -rw-r--r-- root/root 3992 2026-08-01 11:52 ./usr/include/cctbx/sgtbx/reciprocal_space_asu.h -rw-r--r-- root/root 3959 2026-08-01 11:52 ./usr/include/cctbx/sgtbx/reciprocal_space_reference_asu.h -rw-r--r-- root/root 2553 2026-08-01 11:52 ./usr/include/cctbx/sgtbx/reference_settings.h -rw-r--r-- root/root 11934 2026-08-01 11:52 ./usr/include/cctbx/sgtbx/rot_mx.h -rw-r--r-- root/root 338 2026-08-01 11:52 ./usr/include/cctbx/sgtbx/rot_mx_hash.h -rw-r--r-- root/root 1423 2026-08-01 11:52 ./usr/include/cctbx/sgtbx/rot_mx_info.h -rw-r--r-- root/root 1180 2026-08-01 11:52 ./usr/include/cctbx/sgtbx/rotation_matrices.h -rw-r--r-- root/root 684 2026-08-01 11:52 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root/root 2405 2026-08-01 11:52 ./usr/include/cma_es/cma/cmaes_interface.h drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/dxtbx/ drwxr-xr-x root/root 0 2026-08-03 12:09 ./usr/include/dxtbx/array_family/ -rw-r--r-- root/root 15026 2026-08-03 12:09 ./usr/include/dxtbx/array_family/flex_table.h -rw-r--r-- root/root 40157 2026-08-03 12:09 ./usr/include/dxtbx/array_family/flex_table_suite.h -rw-r--r-- root/root 284 2026-08-03 12:09 ./usr/include/dxtbx/array_family/ref_pickle_double_buffered.h drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/dxtbx/boost_python/ -rw-r--r-- root/root 653 2026-08-03 12:09 ./usr/include/dxtbx/boost_python/compression.h -rw-r--r-- root/root 2261 2026-08-03 12:09 ./usr/include/dxtbx/error.h drwxr-xr-x root/root 0 2026-08-03 12:09 ./usr/include/dxtbx/format/ drwxr-xr-x root/root 0 2026-08-03 12:09 ./usr/include/dxtbx/format/boost_python/ -rw-r--r-- root/root 202 2026-08-03 12:09 ./usr/include/dxtbx/format/boost_python/cbf_read_buffer.h -rw-r--r-- root/root 7822 2026-08-03 12:09 ./usr/include/dxtbx/format/image.h -rw-r--r-- root/root 40869 2026-08-03 12:09 ./usr/include/dxtbx/imageset.h drwxr-xr-x root/root 0 2026-08-03 12:09 ./usr/include/dxtbx/masking/ -rw-r--r-- root/root 12548 2026-08-03 12:09 ./usr/include/dxtbx/masking/goniometer_shadow_masking.h -rw-r--r-- root/root 7363 2026-08-03 12:09 ./usr/include/dxtbx/masking/masking.h drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/dxtbx/model/ -rw-r--r-- root/root 32090 2026-08-03 12:09 ./usr/include/dxtbx/model/beam.h drwxr-xr-x root/root 0 2026-08-03 12:09 ./usr/include/dxtbx/model/boost_python/ -rw-r--r-- root/root 6976 2026-08-03 12:09 ./usr/include/dxtbx/model/boost_python/pickle_suite.h -rw-r--r-- root/root 2383 2026-08-03 12:09 ./usr/include/dxtbx/model/boost_python/to_from_dict.h -rw-r--r-- root/root 51769 2026-08-03 12:09 ./usr/include/dxtbx/model/crystal.h -rw-r--r-- root/root 25822 2026-08-03 12:09 ./usr/include/dxtbx/model/detector.h -rw-r--r-- root/root 7523 2026-08-03 12:09 ./usr/include/dxtbx/model/experiment.h -rw-r--r-- root/root 18502 2026-08-03 12:09 ./usr/include/dxtbx/model/experiment_list.h -rw-r--r-- root/root 11551 2026-08-03 12:09 ./usr/include/dxtbx/model/goniometer.h -rw-r--r-- root/root 1987 2026-08-03 12:09 ./usr/include/dxtbx/model/history.h -rw-r--r-- root/root 7383 2026-08-03 12:09 ./usr/include/dxtbx/model/kappa_goniometer.h -rw-r--r-- root/root 746 2026-08-03 12:09 ./usr/include/dxtbx/model/model_helpers.h -rw-r--r-- root/root 5764 2026-08-03 12:09 ./usr/include/dxtbx/model/multi_axis_goniometer.h -rw-r--r-- root/root 20405 2026-08-03 12:09 ./usr/include/dxtbx/model/panel.h -rw-r--r-- root/root 6112 2026-08-03 12:09 ./usr/include/dxtbx/model/panel_data.h -rw-r--r-- root/root 6888 2026-08-03 12:09 ./usr/include/dxtbx/model/parallax_correction.h -rw-r--r-- root/root 15503 2026-08-03 12:09 ./usr/include/dxtbx/model/pixel_to_millimeter.h -rw-r--r-- root/root 2011 2026-08-03 12:09 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11:52 ./usr/include/fem/zero.hpp drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/gltbx/ -rw-r--r-- root/root 1253 2026-08-01 11:52 ./usr/include/gltbx/error.h -rw-r--r-- root/root 2284 2026-08-01 11:52 ./usr/include/gltbx/error_utils.h -rw-r--r-- root/root 5200 2026-08-01 11:52 ./usr/include/gltbx/fonts_ucs.h -rw-r--r-- root/root 570164 2026-08-01 11:52 ./usr/include/gltbx/glext.h -rw-r--r-- root/root 574 2026-08-01 11:52 ./usr/include/gltbx/include_opengl.h -rw-r--r-- root/root 7498 2026-08-01 11:52 ./usr/include/gltbx/pointer_args_bpl.h -rw-r--r-- root/root 10009 2026-08-01 11:52 ./usr/include/gltbx/quadrics.h -rw-r--r-- root/root 655 2026-08-01 11:52 ./usr/include/gltbx/special_wrapper_support.h -rw-r--r-- root/root 317 2026-08-01 11:52 ./usr/include/gltbx/util.h drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/iotbx/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/iotbx/detectors/ -rw-r--r-- root/root 963 2026-08-01 11:52 ./usr/include/iotbx/detectors/bruker.h 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./usr/include/scitbx/error_utils.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/examples/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/examples/bevington/ -rw-r--r-- root/root 21144 2026-08-01 11:52 ./usr/include/scitbx/examples/bevington/prototype_core.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/fftpack/ -rw-r--r-- root/root 25010 2026-08-01 11:52 ./usr/include/scitbx/fftpack/complex_to_complex.h -rw-r--r-- root/root 5615 2026-08-01 11:52 ./usr/include/scitbx/fftpack/complex_to_complex_2d.h -rw-r--r-- root/root 6343 2026-08-01 11:52 ./usr/include/scitbx/fftpack/complex_to_complex_3d.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/fftpack/detail/ -rw-r--r-- root/root 17768 2026-08-01 11:52 ./usr/include/scitbx/fftpack/detail/real_to_complex_backward.h -rw-r--r-- root/root 17631 2026-08-01 11:52 ./usr/include/scitbx/fftpack/detail/real_to_complex_forward.h -rw-r--r-- root/root 1113 2026-08-01 11:52 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3883 2026-08-01 11:52 ./usr/include/scitbx/math/utils.h -rw-r--r-- root/root 6517 2026-08-01 11:52 ./usr/include/scitbx/math/weighted_covariance.h -rw-r--r-- root/root 56695 2026-08-01 11:52 ./usr/include/scitbx/math/zernike.h -rw-r--r-- root/root 26688 2026-08-01 11:52 ./usr/include/scitbx/math/zernike_moments.h drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/scitbx/matrix/ -rw-r--r-- root/root 2132 2026-08-01 11:52 ./usr/include/scitbx/matrix/as_xyz.h -rw-r--r-- root/root 13164 2026-08-01 11:52 ./usr/include/scitbx/matrix/cholesky.h -rw-r--r-- root/root 291 2026-08-01 11:52 ./usr/include/scitbx/matrix/delta_tensors.h -rw-r--r-- root/root 905 2026-08-01 11:52 ./usr/include/scitbx/matrix/diagonal.h -rw-r--r-- root/root 11882 2026-08-01 11:52 ./usr/include/scitbx/matrix/eigensystem.h -rw-r--r-- root/root 7887 2026-08-01 11:52 ./usr/include/scitbx/matrix/givens.h -rw-r--r-- root/root 26266 2026-08-01 11:52 ./usr/include/scitbx/matrix/householder.h -rw-r--r-- root/root 3075 2026-08-01 11:52 ./usr/include/scitbx/matrix/inversion.h -rw-r--r-- root/root 3042 2026-08-01 11:52 ./usr/include/scitbx/matrix/lu_decomposition.h -rw-r--r-- root/root 4031 2026-08-01 11:52 ./usr/include/scitbx/matrix/matrix_vector_operations.h -rw-r--r-- root/root 7602 2026-08-01 11:52 ./usr/include/scitbx/matrix/move.h -rw-r--r-- root/root 5386 2026-08-01 11:52 ./usr/include/scitbx/matrix/multiply.h -rw-r--r-- root/root 1495 2026-08-01 11:52 ./usr/include/scitbx/matrix/norms.h -rw-r--r-- root/root 1801 2026-08-01 11:52 ./usr/include/scitbx/matrix/outer_product.h -rw-r--r-- root/root 9823 2026-08-01 11:52 ./usr/include/scitbx/matrix/packed.h -rw-r--r-- root/root 5862 2026-08-01 11:52 ./usr/include/scitbx/matrix/row_echelon.h -rw-r--r-- root/root 3188 2026-08-01 11:52 ./usr/include/scitbx/matrix/row_echelon_full_pivoting.h -rw-r--r-- root/root 4793 2026-08-01 11:52 ./usr/include/scitbx/matrix/row_echelon_full_pivoting_impl.h -rw-r--r-- root/root 1873 2026-08-01 11:52 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./usr/include/scitbx/rigid_body/joint_t.h -rw-r--r-- root/root 4430 2026-08-01 11:52 ./usr/include/scitbx/rigid_body/matrix_helpers.h -rw-r--r-- root/root 179 2026-08-01 11:52 ./usr/include/scitbx/rigid_body/namespace.h -rw-r--r-- root/root 4748 2026-08-01 11:52 ./usr/include/scitbx/rigid_body/spatial_lib.h -rw-r--r-- root/root 13152 2026-08-01 11:52 ./usr/include/scitbx/rigid_body/tardy.h -rw-r--r-- root/root 683 2026-08-01 11:52 ./usr/include/scitbx/rotr3.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/serialization/ -rw-r--r-- root/root 10056 2026-08-01 11:52 ./usr/include/scitbx/serialization/base_256.h -rw-r--r-- root/root 4719 2026-08-01 11:52 ./usr/include/scitbx/serialization/double_buffered.h -rw-r--r-- root/root 5427 2026-08-01 11:52 ./usr/include/scitbx/serialization/single_buffered.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/slatec/ -rw-r--r-- root/root 370 2026-08-01 11:52 ./usr/include/scitbx/slatec/lib_c.h -rw-r--r-- root/root 1354 2026-08-01 11:52 ./usr/include/scitbx/slatec/lib_cpp.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/sparse/ -rw-r--r-- root/root 1653 2026-08-01 11:52 ./usr/include/scitbx/sparse/approx_equal.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/sparse/boost_python/ -rw-r--r-- root/root 1063 2026-08-01 11:52 ./usr/include/scitbx/sparse/boost_python/vector.h -rw-r--r-- root/root 3021 2026-08-01 11:52 ./usr/include/scitbx/sparse/dfs.h -rw-r--r-- root/root 4091 2026-08-01 11:52 ./usr/include/scitbx/sparse/io.h -rw-r--r-- root/root 10007 2026-08-01 11:52 ./usr/include/scitbx/sparse/lu_factorization.h -rw-r--r-- root/root 17865 2026-08-01 11:52 ./usr/include/scitbx/sparse/matrix.h -rw-r--r-- root/root 2122 2026-08-01 11:52 ./usr/include/scitbx/sparse/operators.h -rw-r--r-- root/root 6837 2026-08-01 11:52 ./usr/include/scitbx/sparse/random.h -rw-r--r-- root/root 2541 2026-08-01 11:52 ./usr/include/scitbx/sparse/triangular.h -rw-r--r-- root/root 195 2026-08-01 11:52 ./usr/include/scitbx/sparse/util.h -rw-r--r-- root/root 22182 2026-08-01 11:52 ./usr/include/scitbx/sparse/vector.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/stl/ -rw-r--r-- root/root 1708 2026-08-01 11:52 ./usr/include/scitbx/stl/map_as_python_dict.h -rw-r--r-- root/root 283 2026-08-01 11:52 ./usr/include/scitbx/stl/map_fwd.h -rw-r--r-- root/root 8037 2026-08-01 11:52 ./usr/include/scitbx/stl/map_wrapper.h -rw-r--r-- root/root 2096 2026-08-01 11:52 ./usr/include/scitbx/stl/set_wrapper.h -rw-r--r-- root/root 1038 2026-08-01 11:52 ./usr/include/scitbx/stl/vector_as_python_list.h -rw-r--r-- root/root 306 2026-08-01 11:52 ./usr/include/scitbx/stl/vector_io.h -rw-r--r-- root/root 4019 2026-08-01 11:52 ./usr/include/scitbx/stl/vector_wrapper.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/boost_python/ -rw-r--r-- root/root 7204 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/boost_python/edge_exports.hpp -rw-r--r-- root/root 1305 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/boost_python/iterator_wrapper.hpp -rw-r--r-- root/root 248 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/boost_python/object_extensions.hpp -rw-r--r-- root/root 1600 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/boost_python/tree_exports.hpp -rw-r--r-- root/root 4163 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/builder.hpp -rw-r--r-- root/root 7108 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/edge.hpp -rw-r--r-- root/root 1008 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/exception.hpp -rw-r--r-- root/root 1599 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/glyph.hpp -rw-r--r-- root/root 3320 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/iterator.hpp -rw-r--r-- root/root 4096 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/matching_statistics.hpp -rw-r--r-- root/root 3423 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/tree.hpp -rw-r--r-- root/root 1432 2026-08-01 11:52 ./usr/include/scitbx/suffixtree/word.hpp -rw-r--r-- root/root 18201 2026-08-01 11:52 ./usr/include/scitbx/sym_mat2.h -rw-r--r-- root/root 22179 2026-08-01 11:52 ./usr/include/scitbx/sym_mat3.h -rw-r--r-- root/root 197 2026-08-01 11:52 ./usr/include/scitbx/type_holder.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/util/ -rw-r--r-- root/root 847 2026-08-01 11:52 ./usr/include/scitbx/util/cpu_timer.h -rw-r--r-- root/root 12686 2026-08-01 11:52 ./usr/include/scitbx/vec2.h -rw-r--r-- root/root 16941 2026-08-01 11:52 ./usr/include/scitbx/vec3.h -rw-r--r-- root/root 10207 2026-08-01 11:52 ./usr/include/scitbx/weighted_histogram.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/scitbx/wigner/ -rw-r--r-- root/root 5923 2026-08-01 11:52 ./usr/include/scitbx/wigner/wigner3j.h drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/smtbx/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/smtbx/ab_initio/ -rw-r--r-- root/root 1006 2026-08-01 11:52 ./usr/include/smtbx/ab_initio/density_modification.h drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/smtbx/boost_python/ -rw-r--r-- root/root 393 2026-09-02 01:55 ./usr/include/smtbx/boost_python/flex_fwd.h -rw-r--r-- root/root 2301 2026-08-01 11:52 ./usr/include/smtbx/error.h -rw-r--r-- root/root 476 2026-08-01 11:52 ./usr/include/smtbx/import_cctbx.h -rw-r--r-- root/root 152 2026-08-01 11:52 ./usr/include/smtbx/import_scitbx_af.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/smtbx/refinement/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/ -rw-r--r-- root/root 1732 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/affine.h -rw-r--r-- root/root 4433 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/direction.h -rw-r--r-- root/root 9783 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/geometrical_hydrogens.h -rw-r--r-- root/root 2539 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/occupancy.h -rw-r--r-- root/root 2394 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/proxy.h -rw-r--r-- root/root 31391 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/reparametrisation.h -rw-r--r-- root/root 3676 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/rigid.h -rw-r--r-- root/root 5965 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/same_group.h -rw-r--r-- root/root 1648 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/scaled_adp.h -rw-r--r-- root/root 3966 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/scatterer_parameters.h -rw-r--r-- root/root 3888 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/shared.h -rw-r--r-- root/root 4524 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/special_position.h -rw-r--r-- root/root 1137 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/symmetry_equivalent.h -rw-r--r-- root/root 1134 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/u_eq_dependent_u_iso.h -rw-r--r-- root/root 1015 2026-08-01 11:52 ./usr/include/smtbx/refinement/constraints/u_iso_dependent_u_iso.h -rw-r--r-- root/root 148 2026-08-01 11:52 ./usr/include/smtbx/refinement/import_cctbx_xray.h -rw-r--r-- root/root 20577 2026-08-01 11:52 ./usr/include/smtbx/refinement/least_squares.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/smtbx/refinement/restraints/ -rw-r--r-- root/root 5055 2026-08-01 11:52 ./usr/include/smtbx/refinement/restraints/origin_fixing.h -rw-r--r-- root/root 2566 2026-08-01 11:52 ./usr/include/smtbx/refinement/weighting_schemes.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/smtbx/structure_factors/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/smtbx/structure_factors/direct/ -rw-r--r-- root/root 52104 2026-08-01 11:52 ./usr/include/smtbx/structure_factors/direct/standard_xray.h -rw-r--r-- root/root 16076 2026-08-01 11:52 ./usr/include/smtbx/structure_factors/direct/table_based.h drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/include/spotfinder/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/spotfinder/applications/ -rw-r--r-- root/root 2023 2026-08-01 11:52 ./usr/include/spotfinder/applications/find_active_area.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/spotfinder/core_toolbox/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/spotfinder/core_toolbox/boost_python/ -rw-r--r-- root/root 3218 2026-08-01 11:52 ./usr/include/spotfinder/core_toolbox/boost_python/singlemask.h -rw-r--r-- root/root 4008 2026-08-01 11:52 ./usr/include/spotfinder/core_toolbox/distl.h -rw-r--r-- root/root 2509 2026-08-01 11:52 ./usr/include/spotfinder/core_toolbox/hough.h -rw-r--r-- root/root 15844 2026-08-01 11:52 ./usr/include/spotfinder/core_toolbox/libdistl.h -rw-r--r-- root/root 5293 2026-08-01 11:52 ./usr/include/spotfinder/core_toolbox/spot_shapes.h -rw-r--r-- root/root 276 2026-08-01 11:52 ./usr/include/spotfinder/core_toolbox/spot_types.h -rw-r--r-- root/root 4454 2026-08-01 11:52 ./usr/include/spotfinder/core_toolbox/spotfilter.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/spotfinder/dxtbx_toolbox/ -rw-r--r-- root/root 3504 2026-08-01 11:52 ./usr/include/spotfinder/dxtbx_toolbox/distl.h -rw-r--r-- root/root 837 2026-08-01 11:52 ./usr/include/spotfinder/dxtbx_toolbox/libdistl.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/tbxx/ -rw-r--r-- root/root 487 2026-08-01 11:52 ./usr/include/tbxx/alignment.h -rw-r--r-- root/root 1760 2026-08-01 11:52 ./usr/include/tbxx/error_utils.hpp -rw-r--r-- root/root 2811 2026-08-01 11:52 ./usr/include/tbxx/libc_backtrace.hpp -rw-r--r-- root/root 2857 2026-08-01 11:52 ./usr/include/tbxx/optional_copy.hpp -rw-r--r-- root/root 1493 2026-08-01 11:52 ./usr/include/tbxx/pretty_type_name.hpp -rw-r--r-- root/root 2124 2026-08-01 11:52 ./usr/include/tbxx/time_accu.hpp drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/xcif/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/xcif/include/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/xcif/include/xcif/ -rw-r--r-- root/root 6274 2026-08-01 11:52 ./usr/include/xcif/include/xcif/data_model.h -rw-r--r-- root/root 7555 2026-08-01 11:52 ./usr/include/xcif/include/xcif/mapped_file.h -rw-r--r-- root/root 1615 2026-08-01 11:52 ./usr/include/xcif/include/xcif/numeric.h -rw-r--r-- root/root 4012 2026-08-01 11:52 ./usr/include/xcif/include/xcif/string_view.h -rw-r--r-- root/root 3129 2026-08-01 11:52 ./usr/include/xcif/include/xcif/tokenizer.h drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/xcif/regression/ drwxr-xr-x root/root 0 2026-08-01 11:52 ./usr/include/xcif/regression/cpp/ -rw-r--r-- root/root 867 2026-08-01 11:52 ./usr/include/xcif/regression/cpp/test_utils.h drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/cctbx/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/cctbx/python3.14/ lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/cctbx/python3.14/include -> ../../../include/cctbx drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libann_adaptor.so -> libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so -> libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libcbf-private.so -> libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libccp4io.so -> libccp4io.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libcctbx.so -> libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libomptbx.so -> libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/librstbx.so -> librstbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libspotfinder.so -> libspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libxcif.so -> libxcif.so.0.0.1 drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/share/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/share/doc/libcctbx-dev/ -rw-r--r-- root/root 2322 2026-09-02 01:55 ./usr/share/doc/libcctbx-dev/changelog.Debian.gz -rw-r--r-- root/root 238 2026-09-02 01:55 ./usr/share/doc/libcctbx-dev/changelog.Debian.ppc64el.gz -rw-r--r-- root/root 5468 2026-08-01 11:52 ./usr/share/doc/libcctbx-dev/changelog.gz -rw-r--r-- root/root 38654 2026-03-07 14:36 ./usr/share/doc/libcctbx-dev/copyright libcctbx0-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb -------------------------------------------------------- new Debian package, version 2.0. size 9790456 bytes: control archive=1528 bytes. 1231 bytes, 12 lines control 2211 bytes, 21 lines md5sums Package: libcctbx0-dbgsym Source: cctbx (2026.7+ds2+~3.30.0+ds1-3) Version: 2026.7+ds2+~3.30.0+ds1-3+b1 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Science Maintainers Installed-Size: 14331 Depends: libcctbx0 (= 2026.7+ds2+~3.30.0+ds1-3+b1) Section: debug Priority: optional Description: debug symbols for libcctbx0 Build-Ids: 064d2774fca2c6c8c911734efde5ae981b38ad5f 0c85ec2b14aacb89edc4ca190501facf55656099 180e02073464600ecb2e18c5fe81ee20bc3d1d8a 1c20e9f1f1c7962ca9d03d49054783c3a3d2d285 1c9de2600d954a3f5ae47f0fee5299d2a679bb92 1dc579542a8e7554ed0d569ad6b4b52da40c0674 367983a43d29ea0b71f792f18a13ca389ba0bcf8 5267f2fbe0d7b8864118752ee1f607035ca81548 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./usr/lib/debug/.build-id/cd/11b7570c095afc769ec244f091c3741e3d20d3.debug drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/debug/.build-id/de/ -rw-r--r-- root/root 2634928 2026-09-02 01:55 ./usr/lib/debug/.build-id/de/4a35c0f9103bb7aa16e69202a3c4d8cb60dd39.debug drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/debug/.build-id/f2/ -rw-r--r-- root/root 14176 2026-09-02 01:55 ./usr/lib/debug/.build-id/f2/28ad567369ad1f29f5e028694e415331fb15d4.debug drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/debug/.build-id/f5/ -rw-r--r-- root/root 106136 2026-09-02 01:55 ./usr/lib/debug/.build-id/f5/a63f8ade9d0b05e40654be903bfd3511117da9.debug drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/ -rw-r--r-- root/root 338232 2026-09-02 01:55 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/libcctbx0.debug drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/share/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/share/doc/libcctbx0-dbgsym -> libcctbx0 libcctbx0_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb ------------------------------------------------- new Debian package, version 2.0. size 2364364 bytes: control archive=2620 bytes. 3085 bytes, 55 lines control 2068 bytes, 24 lines md5sums 1105 bytes, 20 lines shlibs 65 bytes, 2 lines triggers Package: libcctbx0 Source: cctbx (2026.7+ds2+~3.30.0+ds1-3) Version: 2026.7+ds2+~3.30.0+ds1-3+b1 Architecture: ppc64el Maintainer: Debian Science Maintainers Installed-Size: 13315 Depends: libann-cctbx0 (>= 1.1.2+doc), libboost-python1.90.0 (>= 1.90.0), libboost-python1.90.0-py314, libc6 (>= 2.38), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.0), libstdc++6 (>= 13.1) Section: libs Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - runtime libraries Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide the cctbx runtime libraries. drwxr-xr-x root/root 0 2026-09-02 01:55 ./ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 -rw-r--r-- root/root 134608 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 -rw-r--r-- root/root 600888 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libcbf-private.so.0 -> libcbf-private.so.0.0.1 -rw-r--r-- root/root 134800 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libccp4io.so.0 -> libccp4io.so.0.0.1 -rw-r--r-- root/root 67576 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libccp4io.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libcctbx.so.0 -> libcctbx.so.0.0.1 -rw-r--r-- root/root 3028896 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 -rw-r--r-- root/root 4382704 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 -rw-r--r-- root/root 268400 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libdxtbxspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 -rw-r--r-- root/root 400736 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 -rw-r--r-- root/root 1850024 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 -rw-r--r-- root/root 135376 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 -rw-r--r-- root/root 467840 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 -rw-r--r-- root/root 134848 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libomptbx.so.0 -> libomptbx.so.0.0.1 -rw-r--r-- root/root 67800 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/librstbx.so.0 -> librstbx.so.0.0.1 -rw-r--r-- root/root 201648 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/librstbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 -rw-r--r-- root/root 68496 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 -rw-r--r-- root/root 68224 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 -rw-r--r-- root/root 67736 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 -rw-r--r-- root/root 729024 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libspotfinder.so.0 -> libspotfinder.so.0.0.1 -rw-r--r-- root/root 534720 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libxcif.so.0 -> libxcif.so.0.0.1 -rw-r--r-- root/root 201256 2026-09-02 01:55 ./usr/lib/powerpc64le-linux-gnu/libxcif.so.0.0.1 drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/share/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/share/doc/libcctbx0/ -rw-r--r-- root/root 2320 2026-09-02 01:55 ./usr/share/doc/libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 238 2026-09-02 01:55 ./usr/share/doc/libcctbx0/changelog.Debian.ppc64el.gz -rw-r--r-- root/root 5468 2026-08-01 11:52 ./usr/share/doc/libcctbx0/changelog.gz -rw-r--r-- root/root 38654 2026-03-07 14:36 ./usr/share/doc/libcctbx0/copyright python3-cctbx-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb ------------------------------------------------------------ new Debian package, version 2.0. size 145642908 bytes: control archive=9372 bytes. 8747 bytes, 12 lines control 21613 bytes, 204 lines md5sums Package: python3-cctbx-dbgsym Source: cctbx (2026.7+ds2+~3.30.0+ds1-3) Version: 2026.7+ds2+~3.30.0+ds1-3+b1 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Science Maintainers Installed-Size: 291965 Depends: python3-cctbx (= 2026.7+ds2+~3.30.0+ds1-3+b1) Section: debug Priority: optional Description: debug symbols for python3-cctbx Build-Ids: 00a1ee8b184e436df271470ea5706ba66691f586 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----------------------------------------------------- new Debian package, version 2.0. size 120095064 bytes: control archive=131244 bytes. 3911 bytes, 55 lines control 519550 bytes, 5298 lines md5sums 285 bytes, 12 lines * postinst #!/bin/sh 423 bytes, 12 lines * prerm #!/bin/sh Package: python3-cctbx Source: cctbx (2026.7+ds2+~3.30.0+ds1-3) Version: 2026.7+ds2+~3.30.0+ds1-3+b1 Architecture: ppc64el Maintainer: Debian Science Maintainers Installed-Size: 408635 Depends: ca-certificates, libcctbx-dev (= 2026.7+ds2+~3.30.0+ds1-3+b1), libcctbx0 (= 2026.7+ds2+~3.30.0+ds1-3+b1), python3-legacy-cgi, python3-pycbf (>= 0.9.7+dfsg1-2~), tcsh | csh | c-shell, python3 (<< 3.15), python3 (>= 3.14~), python3-h5py (>= 3), python3-hdf5plugin, python3-matplotlib, python3-mrcfile, python3-natsort, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-nxmx, python3-ordered-set, python3-pil, python3-pint, python3-procrunner, python3-pymol, python3-requests, python3-scipy, python3-six, python3-tqdm, python3-wxgtk4.0, python3:any, libantlr3c-3.4-0 | libantlr3c-antlrdbg-3.4-0, libboost-numpy1.90.0 (>= 1.90.0), libboost-numpy1.90.0-py314, libboost-python1.90.0 (>= 1.90.0), libboost-python1.90.0-py314, libboost-thread1.90.0 (>= 1.90.0), libboost-timer1.90.0 (>= 1.90.0), libc6 (>= 2.43), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.0), libgl1, libglu1-mesa | libglu1, libhdf5-320 (>= 2.1.0), libmmdb2-0 (>= 2.0.22), libssm2 (>= 1.4.0), libstdc++6 (>= 14) Section: python Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Python Toolbox for crystallography Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide a selected collection of python modules from the cctbx project. drwxr-xr-x root/root 0 2026-09-02 01:55 ./ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/ drwxr-xr-x root/root 0 2026-09-02 01:55 ./usr/bin/ -rwxr-xr-x root/root 3202 2026-09-02 01:55 ./usr/bin/annlib.python -rwxr-xr-x root/root 3745 2026-09-02 01:55 ./usr/bin/annlib.show_build_path -rwxr-xr-x root/root 3745 2026-09-02 01:55 ./usr/bin/annlib.show_dist_paths -rwxr-xr-x root/root 3717 2026-09-02 01:55 ./usr/bin/boost.gcd -rwxr-xr-x root/root 3717 2026-09-02 01:55 ./usr/bin/boost.lcm -rwxr-xr-x root/root 3201 2026-09-02 01:55 ./usr/bin/boost.python -rwxr-xr-x root/root 3744 2026-09-02 01:55 ./usr/bin/boost.show_build_path -rwxr-xr-x root/root 3744 2026-09-02 01:55 ./usr/bin/boost.show_dist_paths -rwxr-xr-x root/root 3769 2026-09-02 01:55 ./usr/bin/boost_adaptbx.divide_by_zero -rwxr-xr-x root/root 3773 2026-09-02 01:55 ./usr/bin/boost_adaptbx.double_overflow -rwxr-xr-x root/root 3741 2026-09-02 01:55 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./usr/bin/phenix.TAAM_minus_IAM -rwxr-xr-x root/root 3702 2026-09-02 01:55 ./usr/bin/phenix.angle -rwxr-xr-x root/root 3730 2026-09-02 01:55 ./usr/bin/phenix.auto_sharpen -rwxr-xr-x root/root 3762 2026-09-02 01:55 ./usr/bin/phenix.barbed_wire_analysis -rwxr-xr-x root/root 3738 2026-09-02 01:55 ./usr/bin/phenix.cablam -rwxr-xr-x root/root 3758 2026-09-02 01:55 ./usr/bin/phenix.cablam_idealization -rwxr-xr-x root/root 3746 2026-09-02 01:55 ./usr/bin/phenix.cbetadev -rwxr-xr-x root/root 3710 2026-09-02 01:55 ./usr/bin/phenix.cc_star -rwxr-xr-x root/root 3782 2026-09-02 01:55 ./usr/bin/phenix.chiral_validation -rwxr-xr-x root/root 3722 2026-09-02 01:55 ./usr/bin/phenix.cif_as_mtz -rwxr-xr-x root/root 3722 2026-09-02 01:55 ./usr/bin/phenix.cif_as_pdb -rwxr-xr-x root/root 3754 2026-09-02 01:55 ./usr/bin/phenix.clashscore -rwxr-xr-x root/root 3758 2026-09-02 01:55 ./usr/bin/phenix.clashscore2 -rwxr-xr-x root/root 3722 2026-09-02 01:55 ./usr/bin/phenix.cns_as_mtz -rwxr-xr-x root/root 3718 2026-09-02 01:55 ./usr/bin/phenix.comparama -rwxr-xr-x root/root 3816 2026-09-02 01:55 ./usr/bin/phenix.compare_datasets -rwxr-xr-x root/root 3722 2026-09-02 01:55 ./usr/bin/phenix.csv_as_mtz -rwxr-xr-x root/root 3784 2026-09-02 01:55 ./usr/bin/phenix.data_viewer -rwxr-xr-x root/root 3774 2026-09-02 01:55 ./usr/bin/phenix.development.next_gen_atom_typing -rwxr-xr-x root/root 3775 2026-09-02 01:55 ./usr/bin/phenix.development.the_run_down -rwxr-xr-x root/root 3765 2026-09-02 01:55 ./usr/bin/phenix.development.valence_simple -rwxr-xr-x root/root 3726 2026-09-02 01:55 ./usr/bin/phenix.development.xtrapol8 -rwxr-xr-x root/root 3710 2026-09-02 01:55 ./usr/bin/phenix.diffuse -rwxr-xr-x root/root 3714 2026-09-02 01:55 ./usr/bin/phenix.dynamics -rwxr-xr-x root/root 3698 2026-09-02 01:55 ./usr/bin/phenix.emma -rwxr-xr-x root/root 3771 2026-09-02 01:55 ./usr/bin/phenix.emringer -rwxr-xr-x root/root 3805 2026-09-02 01:55 ./usr/bin/phenix.example_viewer -rwxr-xr-x root/root 3774 2026-09-02 01:55 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+------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 12 Sep 2026 07:50:15 +0000 | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 7111936 Build-Time: 1014 Distribution: unstable Host Architecture: ppc64el Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderdjWrKcz/inputs/cctbx_2026.7+ds2+~3.30.0+ds1-3.dsc Machine Architecture: ppc64el Package: cctbx Package-Time: 1038 Source-Version: 2026.7+ds2+~3.30.0+ds1-3 Space: 7111936 Status: successful Version: 2026.7+ds2+~3.30.0+ds1-3+b1 -------------------------------------------------------------------------------- Finished at 2026-09-12T07:50:05Z Build needed 00:17:18, 7111936k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdjWrKcz/out checking libcctbx-dev_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb: size... md5... sha1... sha256... all OK checking libcctbx0-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb: size... sha1... md5... sha256... all OK checking libcctbx0_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb: size... md5... sha1... sha256... all OK checking python3-cctbx-dbgsym_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb: size... sha256... sha1... md5... all OK checking python3-cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb: size differs for python3-cctbx_2026.7+ds2+~3.30.0+ds1-3+b1_ppc64el.deb