=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdZXJjmO/inputs/python-pysam_0.23.3+ds-2+b2_ppc64el.buildinfo Source: python-pysam Version: 0.23.3+ds-2 rebuilderd-worker node: osuosl7-ppc64el +------------------------------------------------------------------------------+ | Downloading sources Thu, 01 Oct 2026 10:56:52 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.7 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [193 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [238 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [1,840 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [105 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,412 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [313 kB] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7,872 B] Get:18 https://deb.debian.org/debian forky/main Sources [11.3 MB] Get:19 https://deb.debian.org/debian sid/main Sources [12.0 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.8 kB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Get:22 https://deb.debian.org/debian experimental/main Sources [388 kB] Fetched 35.7 MB in 5s (7,464 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds-2.dsc' python-pysam_0.23.3+ds-2.dsc 2563 SHA256:f3b0fd2ac35e45fe9feeaf0042539d3d2c35f7ffe158774692f641828b9e4947 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds.orig.tar.xz' python-pysam_0.23.3+ds.orig.tar.xz 1504032 SHA256:2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds-2.debian.tar.xz' python-pysam_0.23.3+ds-2.debian.tar.xz 10808 SHA256:27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 python-pysam_0.23.3+ds.orig.tar.xz 27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 python-pysam_0.23.3+ds-2.debian.tar.xz f3b0fd2ac35e45fe9feeaf0042539d3d2c35f7ffe158774692f641828b9e4947 python-pysam_0.23.3+ds-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Thu, 01 Oct 2026 10:56:58 +0000 | +------------------------------------------------------------------------------+ Rebuilding python-pysam=0.23.3+ds-2 in /srv/rebuilderd/tmp/rebuilderdZXJjmO/inputs now. + /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdZXJjmO/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdZXJjmO/inputs/python-pysam_0.23.3+ds-2+b2_ppc64el.buildinfo /srv/rebuilderd/tmp/rebuilderdZXJjmO/inputs/python-pysam_0.23.3+ds-2+b2_ppc64el.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/python-pysam-0.23.3+ds I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable InRelease [193 kB] Get:3 http://snapshot.debian.org/archive/debian/20260905T205002Z unstable InRelease [193 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el Packages [10.6 MB] Get:5 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el Packages [10.5 MB] Get:6 http://snapshot.debian.org/archive/debian/20260905T205002Z unstable/main ppc64el Packages [10.5 MB] Fetched 32.2 MB in 4s (7657 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260903T204250Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20260905T205002Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main ppc64el libacl1 ppc64el 2.4.0-1 [39.2 kB] Get:2 http://deb.debian.org/debian unstable/main ppc64el libattr1 ppc64el 1:2.6.0-1 [25.5 kB] Get:3 http://deb.debian.org/debian unstable/main ppc64el autoconf all 2.73-2 [516 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:5 http://deb.debian.org/debian unstable/main ppc64el base-files ppc64el 14.2 [88.0 kB] Get:6 http://deb.debian.org/debian unstable/main ppc64el base-passwd ppc64el 3.6.8 [55.8 kB] Get:7 http://deb.debian.org/debian unstable/main ppc64el libbrotli-dev ppc64el 1.2.0-4+b1 [354 kB] Get:8 http://deb.debian.org/debian unstable/main ppc64el libbrotli1 ppc64el 1.2.0-4+b1 [338 kB] Get:9 http://deb.debian.org/debian unstable/main ppc64el build-essential ppc64el 12.12 [4628 B] Get:10 http://deb.debian.org/debian unstable/main ppc64el bzip2 ppc64el 1.0.8-6+b2 [41.0 kB] Get:11 http://deb.debian.org/debian unstable/main ppc64el libbz2-1.0 ppc64el 1.0.8-6+b2 [44.2 kB] Get:12 http://deb.debian.org/debian unstable/main ppc64el libbz2-dev ppc64el 1.0.8-6+b2 [38.8 kB] Get:13 http://deb.debian.org/debian unstable/main ppc64el libdebconfclient0 ppc64el 0.283 [7608 B] Get:14 http://deb.debian.org/debian unstable/main ppc64el coreutils ppc64el 9.10-1 [3186 kB] Get:15 http://deb.debian.org/debian unstable/main ppc64el dash ppc64el 0.5.12-12 [104 kB] Get:16 http://deb.debian.org/debian unstable/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-11+b1 [750 kB] Get:17 http://deb.debian.org/debian unstable/main ppc64el debconf all 1.5.92 [123 kB] Get:18 http://deb.debian.org/debian unstable/main ppc64el debianutils ppc64el 5.24 [94.2 kB] Get:19 http://deb.debian.org/debian unstable/main ppc64el dh-python all 7.20260623 [114 kB] Get:20 http://deb.debian.org/debian unstable/main ppc64el diffutils ppc64el 1:3.12-1 [413 kB] Get:21 http://deb.debian.org/debian unstable/main ppc64el dwz ppc64el 0.17-1 [114 kB] Get:22 http://deb.debian.org/debian unstable/main ppc64el comerr-dev ppc64el 2.1-1.47.4-1+b1 [51.8 kB] Get:23 http://deb.debian.org/debian unstable/main ppc64el libcom-err2 ppc64el 1.47.4-1+b1 [19.8 kB] Get:24 http://deb.debian.org/debian unstable/main ppc64el libelf1t64 ppc64el 0.196-1 [68.0 kB] Get:25 http://deb.debian.org/debian unstable/main ppc64el file ppc64el 1:5.47-4 [44.0 kB] Get:26 http://deb.debian.org/debian unstable/main ppc64el findutils ppc64el 4.11.0-2 [812 kB] Get:27 http://deb.debian.org/debian unstable/main ppc64el cpp ppc64el 4:16.1.0-3 [1580 B] Get:28 http://deb.debian.org/debian unstable/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:16.1.0-3 [4476 B] Get:29 http://deb.debian.org/debian unstable/main ppc64el g++ ppc64el 4:16.1.0-3 [1336 B] Get:30 http://deb.debian.org/debian unstable/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:16.1.0-3 [1204 B] Get:31 http://deb.debian.org/debian unstable/main ppc64el gcc ppc64el 4:16.1.0-3 [5152 B] Get:32 http://deb.debian.org/debian unstable/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:16.1.0-3 [1444 B] Get:33 http://deb.debian.org/debian unstable/main ppc64el libgdbm-compat4t64 ppc64el 1.26-1+b2 [52.4 kB] Get:34 http://deb.debian.org/debian unstable/main ppc64el libgdbm6t64 ppc64el 1.26-1+b2 [82.0 kB] Get:35 http://deb.debian.org/debian unstable/main ppc64el libgmp-dev ppc64el 2:6.3.0+dfsg-5+b2 [667 kB] Get:36 http://deb.debian.org/debian unstable/main ppc64el libgmp10 ppc64el 2:6.3.0+dfsg-5+b2 [580 kB] Get:37 http://deb.debian.org/debian unstable/main ppc64el libgmpxx4ldbl ppc64el 2:6.3.0+dfsg-5+b2 [328 kB] Get:38 http://deb.debian.org/debian unstable/main ppc64el libgnutls-dane0t64 ppc64el 3.8.13-1 [499 kB] Get:39 http://deb.debian.org/debian unstable/main ppc64el libgnutls28-dev ppc64el 3.8.13-1 [1543 kB] Get:40 http://deb.debian.org/debian unstable/main ppc64el grep ppc64el 3.12-1 [455 kB] Get:41 http://deb.debian.org/debian unstable/main ppc64el gzip ppc64el 1.14-1 [147 kB] Get:42 http://deb.debian.org/debian unstable/main ppc64el hostname ppc64el 3.25 [11.3 kB] Get:43 http://deb.debian.org/debian unstable/main ppc64el intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:44 http://deb.debian.org/debian unstable/main ppc64el krb5-multidev ppc64el 1.22.1-3 [125 kB] Get:45 http://deb.debian.org/debian unstable/main ppc64el libarchive-zip-perl all 1.68-1 [104 kB] Get:46 http://deb.debian.org/debian unstable/main ppc64el libdeflate-dev ppc64el 1.25-1 [52.2 kB] Get:47 http://deb.debian.org/debian unstable/main ppc64el libdeflate0 ppc64el 1.25-1 [44.0 kB] Get:48 http://deb.debian.org/debian unstable/main ppc64el libevent-2.1-7t64 ppc64el 2.1.13-stable-1 [190 kB] Get:49 http://deb.debian.org/debian unstable/main ppc64el libffi8 ppc64el 3.8.0-2 [30.8 kB] Get:50 http://deb.debian.org/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.5.2+20251210-1 [104 kB] Get:51 http://deb.debian.org/debian unstable/main ppc64el dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:52 http://deb.debian.org/debian unstable/main ppc64el libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:53 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libaudit-common all 1:4.1.2-1 [14.3 kB] Get:54 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libaudit1 ppc64el 1:4.1.2-1+b1 [62.6 kB] Get:55 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el automake all 1:1.18.1-4 [877 kB] Get:56 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el bash ppc64el 5.3-3+b1 [1606 kB] Get:57 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el bcftools ppc64el 1.22-1 [865 kB] Get:58 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el binutils ppc64el 2.47-2 [70.2 kB] Get:59 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el binutils-common ppc64el 2.47-2 [2685 kB] Get:60 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.47-2 [912 kB] Get:61 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libbinutils ppc64el 2.47-2 [629 kB] Get:62 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libctf-nobfd0 ppc64el 2.47-2 [173 kB] Get:63 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libctf0 ppc64el 2.47-2 [104 kB] Get:64 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libcurl3t64-gnutls ppc64el 8.22.0-1 [17.8 kB] Get:65 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libcurl4-gnutls ppc64el 8.22.0-1 [472 kB] Get:66 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libcurl4-gnutls-dev ppc64el 8.22.0-1 [605 kB] Get:67 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el cython3 ppc64el 3.1.6+dfsg-3 [3107 kB] Get:68 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el debhelper all 14.3 [934 kB] Get:69 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libdebhelper-perl all 14.3 [77.3 kB] Get:70 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el dh-autoreconf all 22 [12.2 kB] Get:71 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el dpkg ppc64el 1.23.7 [1545 kB] Get:72 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el dpkg-dev all 1.23.7 [1318 kB] Get:73 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libdpkg-perl all 1.23.7 [669 kB] Get:74 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libexpat1 ppc64el 2.8.4-1 [125 kB] Get:75 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libexpat1-dev ppc64el 2.8.4-1 [182 kB] Get:76 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el cpp-16 ppc64el 16.2.0-2 [1280 B] Get:77 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el cpp-16-powerpc64le-linux-gnu ppc64el 16.2.0-2 [68.8 MB] Get:78 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el g++-16 ppc64el 16.2.0-2 [35.2 kB] Get:79 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el g++-16-powerpc64le-linux-gnu ppc64el 16.2.0-2 [74.4 MB] Get:80 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el gcc-16 ppc64el 16.2.0-2 [535 kB] Get:81 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el gcc-16-base ppc64el 16.2.0-2 [38.4 kB] Get:82 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el gcc-16-powerpc64le-linux-gnu ppc64el 16.2.0-2 [77.7 MB] Get:83 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libasan8 ppc64el 16.2.0-2 [2795 kB] Get:84 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libatomic1 ppc64el 16.2.0-2 [10.2 kB] Get:85 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libcc1-0 ppc64el 16.2.0-2 [45.4 kB] Get:86 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libgcc-16-dev ppc64el 16.2.0-2 [1486 kB] Get:87 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libgcc-s1 ppc64el 16.2.0-2 [51.9 kB] Get:88 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el autopoint all 1.0-3 [820 kB] Get:89 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el gettext ppc64el 1.0-3 [2722 kB] Get:90 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el gettext-base ppc64el 1.0-3 [353 kB] Get:91 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libc-bin ppc64el 2.43-4 [655 kB] Get:92 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libc-dev-bin ppc64el 2.43-4 [39.3 kB] Get:93 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libc-gconv-modules-extra ppc64el 2.43-4 [1130 kB] Get:94 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libc6 ppc64el 2.43-4 [1746 kB] Get:95 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libc6-dev ppc64el 2.43-4 [1978 kB] Get:96 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el groff-base ppc64el 1.24.1-1 [1336 kB] Get:97 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el init-system-helpers all 1.69+nmu1 [37.1 kB] Get:98 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libcap-ng0 ppc64el 0.9.5-1 [19.1 kB] Get:99 http://snapshot.debian.org/archive/debian/20260905T205002Z unstable/main ppc64el bsdextrautils ppc64el 2.42.3-1 [128 kB] Get:100 http://snapshot.debian.org/archive/debian/20260905T205002Z unstable/main ppc64el libblkid1 ppc64el 2.42.3-1 [208 kB] Fetched 267 MB in 2s (177 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/comerr-dev_2.1-1.47.4-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libc-bin_2.43-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/coreutils_9.10-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libc6_2.43-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libdebconfclient0_0.283_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/cpp-16-powerpc64le-linux-gnu_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libblkid1_2.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/dh-autoreconf_22_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libbinutils_2.47-2_ppc64el.deb' dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/libgmp-dev_6.3.0+dfsg-5+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/autopoint_1.0-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libcurl3t64-gnutls_8.22.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/g++-16-powerpc64le-linux-gnu_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/gcc-16-powerpc64le-linux-gnu_16.2.0-2_ppc64el.deb' dpkg-name: info: moved 'libattr1_1%3a2.6.0-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/libattr1_2.6.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/cython3_3.1.6+dfsg-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/g++-16_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libdb5.3t64_5.3.28+dfsg2-11+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/autoconf_2.73-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libc-dev-bin_2.43-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libexpat1-dev_2.8.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libacl1_2.4.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/bcftools_1.22-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/gettext-base_1.0-3_ppc64el.deb' dpkg-name: info: moved 'file_1%3a5.47-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/file_5.47-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/groff-base_1.24.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/autotools-dev_20240727.1+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libelf1t64_0.196-1_ppc64el.deb' dpkg-name: info: moved 'g++_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/g++_16.1.0-3_ppc64el.deb' dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/libaudit1_4.1.2-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libdpkg-perl_1.23.7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libcap-ng0_0.9.5-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libdebhelper-perl_14.3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libgdbm-compat4t64_1.26-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/krb5-multidev_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libfile-stripnondeterminism-perl_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/dh-strip-nondeterminism_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libcurl4-gnutls-dev_8.22.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/base-passwd_3.6.8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/debconf_1.5.92_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libevent-2.1-7t64_2.1.13-stable-1_ppc64el.deb' dpkg-name: info: moved 'cpp-powerpc64le-linux-gnu_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/cpp-powerpc64le-linux-gnu_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libffi8_3.8.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libgcc-16-dev_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libgdbm6t64_1.26-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/dpkg-dev_1.23.7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libgnutls28-dev_3.8.13-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/findutils_4.11.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/build-essential_12.12_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/grep_3.12-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libc6-dev_2.43-4_ppc64el.deb' dpkg-name: info: moved 'g++-powerpc64le-linux-gnu_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/g++-powerpc64le-linux-gnu_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/dh-python_7.20260623_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/bsdextrautils_2.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libasan8_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libbrotli-dev_1.2.0-4+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libcom-err2_1.47.4-1+b1_ppc64el.deb' dpkg-name: info: moved 'gcc_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/gcc_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/init-system-helpers_1.69+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/binutils-common_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libexpat1_2.8.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/cpp-16_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libdeflate0_1.25-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libbz2-dev_1.0.8-6+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/gzip_1.14-1_ppc64el.deb' dpkg-name: info: moved 'gcc-powerpc64le-linux-gnu_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/gcc-powerpc64le-linux-gnu_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/bzip2_1.0.8-6+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/gettext_1.0-3_ppc64el.deb' dpkg-name: info: moved 'libcrypt1_1%3a4.5.2+20251210-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/libcrypt1_4.5.2+20251210-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/debianutils_5.24_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/bash_5.3-3+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libctf-nobfd0_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libgnutls-dane0t64_3.8.13-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libbz2-1.0_1.0.8-6+b2_ppc64el.deb' dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/automake_1.18.1-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libgcc-s1_16.2.0-2_ppc64el.deb' dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/libgmp10_6.3.0+dfsg-5+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/dash_0.5.12-12_ppc64el.deb' dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/libaudit-common_4.1.2-1_all.deb' dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/libgmpxx4ldbl_6.3.0+dfsg-5+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libarchive-zip-perl_1.68-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libctf0_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libatomic1_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libdeflate-dev_1.25-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/dwz_0.17-1_ppc64el.deb' dpkg-name: info: moved 'diffutils_1%3a3.12-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/diffutils_3.12-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libbrotli1_1.2.0-4+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libcc1-0_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/binutils_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/gcc-16_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libcurl4-gnutls_8.22.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/debhelper_14.3_all.deb' dpkg-name: info: moved 'cpp_4%3a16.1.0-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj__5wj8t/cpp_16.1.0-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/hostname_3.25_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/base-files_14.2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/intltool-debian_0.35.0+20060710.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/binutils-powerpc64le-linux-gnu_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/gcc-16-base_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/dpkg_1.23.7_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj__5wj8t/libc-gconv-modules-extra_2.43-4_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-11 [63.3 kB] Get:2 http://deb.debian.org/debian unstable/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-11 [19.1 kB] Get:3 http://deb.debian.org/debian unstable/main ppc64el libmagic-mgc ppc64el 1:5.47-4 [345 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el libmagic1t64 ppc64el 1:5.47-4 [119 kB] Get:5 http://deb.debian.org/debian unstable/main ppc64el libgnutls30t64 ppc64el 3.8.13-1 [1510 kB] Get:6 http://deb.debian.org/debian unstable/main ppc64el libisl23 ppc64el 0.28-1 [743 kB] Get:7 http://deb.debian.org/debian unstable/main ppc64el libjansson4 ppc64el 2.15.1-1 [70.9 kB] Get:8 http://deb.debian.org/debian unstable/main ppc64el libkeyutils1 ppc64el 1.6.3-6+b2 [10.5 kB] Get:9 http://deb.debian.org/debian unstable/main ppc64el libgssapi-krb5-2 ppc64el 1.22.1-3 [151 kB] Get:10 http://deb.debian.org/debian unstable/main ppc64el libgssrpc4t64 ppc64el 1.22.1-3 [62.4 kB] Get:11 http://deb.debian.org/debian unstable/main ppc64el libk5crypto3 ppc64el 1.22.1-3 [88.9 kB] Get:12 http://deb.debian.org/debian unstable/main ppc64el libkadm5clnt-mit12 ppc64el 1.22.1-3 [42.5 kB] Get:13 http://deb.debian.org/debian unstable/main ppc64el libkadm5srv-mit12 ppc64el 1.22.1-3 [59.0 kB] Get:14 http://deb.debian.org/debian unstable/main ppc64el libkdb5-10t64 ppc64el 1.22.1-3 [46.3 kB] Get:15 http://deb.debian.org/debian unstable/main ppc64el libkrb5-3 ppc64el 1.22.1-3 [371 kB] Get:16 http://deb.debian.org/debian unstable/main ppc64el libkrb5-dev ppc64el 1.22.1-3 [14.1 kB] Get:17 http://deb.debian.org/debian unstable/main ppc64el libkrb5support0 ppc64el 1.22.1-3 [33.5 kB] Get:18 http://deb.debian.org/debian unstable/main ppc64el libidn2-0 ppc64el 2.3.8-5 [111 kB] Get:19 http://deb.debian.org/debian unstable/main ppc64el libidn2-dev ppc64el 2.3.8-5 [105 kB] Get:20 http://deb.debian.org/debian unstable/main ppc64el libpipeline1 ppc64el 1.5.8-3 [51.2 kB] Get:21 http://deb.debian.org/debian unstable/main ppc64el libpsl-dev ppc64el 0.23.3-1 [30.1 kB] Get:22 http://deb.debian.org/debian unstable/main ppc64el libpsl5t64 ppc64el 0.23.3-1 [62.5 kB] Get:23 http://deb.debian.org/debian unstable/main ppc64el libssh2-1-dev ppc64el 1.11.1-6 [409 kB] Get:24 http://deb.debian.org/debian unstable/main ppc64el libssh2-1t64 ppc64el 1.11.1-6 [256 kB] Get:25 http://deb.debian.org/debian unstable/main ppc64el libtasn1-6 ppc64el 4.21.0-2+b1 [53.8 kB] Get:26 http://deb.debian.org/debian unstable/main ppc64el libtasn1-6-dev ppc64el 4.21.0-2+b1 [104 kB] Get:27 http://deb.debian.org/debian unstable/main ppc64el libunistring-dev ppc64el 1.4.2-1 [654 kB] Get:28 http://deb.debian.org/debian unstable/main ppc64el libunistring5 ppc64el 1.4.2-1 [496 kB] Get:29 http://deb.debian.org/debian unstable/main ppc64el libzstd-dev ppc64el 1.5.7+dfsg-4 [399 kB] Get:30 http://deb.debian.org/debian unstable/main ppc64el libzstd1 ppc64el 1.5.7+dfsg-4 [327 kB] Get:31 http://deb.debian.org/debian unstable/main ppc64el m4 ppc64el 1.4.21-1 [340 kB] Get:32 http://deb.debian.org/debian unstable/main ppc64el make ppc64el 4.4.1-3 [470 kB] Get:33 http://deb.debian.org/debian unstable/main ppc64el man-db ppc64el 2.13.1-1 [1481 kB] Get:34 http://deb.debian.org/debian unstable/main ppc64el libmpc3 ppc64el 1.3.1-3 [72.2 kB] Get:35 http://deb.debian.org/debian unstable/main ppc64el libmpfr6 ppc64el 4.2.2-3 [729 kB] Get:36 http://deb.debian.org/debian unstable/main ppc64el libncurses6 ppc64el 6.6+20260608-2 [120 kB] Get:37 http://deb.debian.org/debian unstable/main ppc64el libncursesw6 ppc64el 6.6+20260608-2 [154 kB] Get:38 http://deb.debian.org/debian unstable/main ppc64el libtinfo6 ppc64el 6.6+20260608-2 [362 kB] Get:39 http://deb.debian.org/debian unstable/main ppc64el libhogweed6t64 ppc64el 3.10.2-1+b1 [338 kB] Get:40 http://deb.debian.org/debian unstable/main ppc64el libnettle8t64 ppc64el 3.10.2-1+b1 [329 kB] Get:41 http://deb.debian.org/debian unstable/main ppc64el libnghttp2-14 ppc64el 1.70.0-1 [99.3 kB] Get:42 http://deb.debian.org/debian unstable/main ppc64el libnghttp2-dev ppc64el 1.70.0-1 [139 kB] Get:43 http://deb.debian.org/debian unstable/main ppc64el libnghttp3-9 ppc64el 1.17.0-1 [72.8 kB] Get:44 http://deb.debian.org/debian unstable/main ppc64el libnghttp3-dev ppc64el 1.17.0-1 [102 kB] Get:45 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-16 ppc64el 1.24.0-1 [152 kB] Get:46 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-crypto-gnutls-dev ppc64el 1.24.0-1 [25.0 kB] Get:47 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-crypto-gnutls8 ppc64el 1.24.0-1 [24.4 kB] Get:48 http://deb.debian.org/debian unstable/main ppc64el libngtcp2-dev ppc64el 1.24.0-1 [217 kB] Get:49 http://deb.debian.org/debian unstable/main ppc64el libldap-dev ppc64el 2.6.14+dfsg-2 [331 kB] Get:50 http://deb.debian.org/debian unstable/main ppc64el libldap2 ppc64el 2.6.14+dfsg-2 [203 kB] Get:51 http://deb.debian.org/debian unstable/main ppc64el libp11-kit-dev ppc64el 0.26.5-1 [226 kB] Get:52 http://deb.debian.org/debian unstable/main ppc64el libp11-kit0 ppc64el 0.26.5-1 [460 kB] Get:53 http://deb.debian.org/debian unstable/main ppc64el libpam-modules ppc64el 1.7.0-8 [195 kB] Get:54 http://deb.debian.org/debian unstable/main ppc64el libpam-modules-bin ppc64el 1.7.0-8 [49.7 kB] Get:55 http://deb.debian.org/debian unstable/main ppc64el libpam-runtime all 1.7.0-8 [246 kB] Get:56 http://deb.debian.org/debian unstable/main ppc64el libpam0g ppc64el 1.7.0-8 [71.4 kB] Get:57 http://deb.debian.org/debian unstable/main ppc64el libperl5.42 ppc64el 5.42.3-1 [4258 kB] Get:58 http://deb.debian.org/debian unstable/main ppc64el libpkgconf7 ppc64el 2.5.1-4 [51.5 kB] Get:59 http://deb.debian.org/debian unstable/main ppc64el libpython3-all-dev ppc64el 3.14.7-3 [1012 B] Get:60 http://deb.debian.org/debian unstable/main ppc64el libpython3-dev ppc64el 3.14.7-3 [8488 B] Get:61 http://deb.debian.org/debian unstable/main ppc64el libpython3-stdlib ppc64el 3.14.7-3 [8252 B] Get:62 http://deb.debian.org/debian unstable/main ppc64el libreadline8t64 ppc64el 8.3-4 [192 kB] Get:63 http://deb.debian.org/debian unstable/main ppc64el librtmp-dev ppc64el 2.6-1 [75.3 kB] Get:64 http://deb.debian.org/debian unstable/main ppc64el librtmp1 ppc64el 2.6-1 [65.0 kB] Get:65 http://deb.debian.org/debian unstable/main ppc64el libsqlite3-0 ppc64el 3.53.4-2 [1025 kB] Get:66 http://deb.debian.org/debian unstable/main ppc64el libuchardet0 ppc64el 0.0.8-2+b2 [71.0 kB] Get:67 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libsframe3 ppc64el 2.47-2 [87.1 kB] Get:68 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libgomp1 ppc64el 16.2.0-2 [155 kB] Get:69 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libitm1 ppc64el 16.2.0-2 [29.1 kB] Get:70 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el liblsan0 ppc64el 16.2.0-2 [1273 kB] Get:71 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libquadmath0 ppc64el 16.2.0-2 [157 kB] Get:72 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libstdc++-16-dev ppc64el 16.2.0-2 [2941 kB] Get:73 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libstdc++6 ppc64el 16.2.0-2 [888 kB] Get:74 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libtsan2 ppc64el 16.2.0-2 [2511 kB] Get:75 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libubsan1 ppc64el 16.2.0-2 [1196 kB] Get:76 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libhtscodecs2 ppc64el 1.6.6-1 [87.6 kB] Get:77 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libhts-dev ppc64el 1.22.1+ds2-1+b2 [1812 kB] Get:78 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libhts3t64 ppc64el 1.22.1+ds2-1+b2 [515 kB] Get:79 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libmd0 ppc64el 1.2.0-2 [41.9 kB] Get:80 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libseccomp2 ppc64el 2.6.1-1 [56.5 kB] Get:81 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libselinux1 ppc64el 3.11-2 [97.2 kB] Get:82 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libtool all 2.6.2-2 [553 kB] Get:83 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el linux-libc-dev all 7.1.12-1 [2062 kB] Get:84 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libssl-dev ppc64el 3.6.4-1 [3217 kB] Get:85 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libssl3t64 ppc64el 3.6.4-1 [2575 kB] Get:86 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libpcre2-8-0 ppc64el 10.48-2 [296 kB] Get:87 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libpython3.14 ppc64el 3.14.7-1 [2437 kB] Get:88 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libpython3.14-dev ppc64el 3.14.7-1 [5790 kB] Get:89 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libpython3.14-minimal ppc64el 3.14.7-1 [895 kB] Get:90 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libpython3.14-stdlib ppc64el 3.14.7-1 [2337 kB] Get:91 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libjs-sphinxdoc all 9.1.0-7 [46.1 kB] Get:92 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libsystemd0 ppc64el 262~rc1-2 [502 kB] Get:93 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libudev1 ppc64el 262~rc1-2 [147 kB] Get:94 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el libunbound8 ppc64el 1.26.0-2 [659 kB] Get:95 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el liblzma-dev ppc64el 5.8.3-1 [378 kB] Get:96 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el liblzma5 ppc64el 5.8.3-1 [339 kB] Get:97 http://snapshot.debian.org/archive/debian/20260905T205002Z unstable/main ppc64el libxml2-16 ppc64el 2.15.3+dfsg-1+b1 [689 kB] Get:98 http://snapshot.debian.org/archive/debian/20260905T205002Z unstable/main ppc64el libmount1 ppc64el 2.42.3-1 [252 kB] Get:99 http://snapshot.debian.org/archive/debian/20260905T205002Z unstable/main ppc64el libsmartcols1 ppc64el 2.42.3-1 [173 kB] Get:100 http://snapshot.debian.org/archive/debian/20260905T205002Z unstable/main ppc64el libuuid1 ppc64el 2.42.3-1 [35.2 kB] Fetched 54.8 MB in 0s (149 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpsl5t64_0.23.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libunistring-dev_1.4.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libstdc++6_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpython3.14-dev_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpython3-dev_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpython3-all-dev_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/librtmp1_2.6-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpkgconf7_2.5.1-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libreadline8t64_8.3-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libselinux1_3.11-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libnettle8t64_3.10.2-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libuchardet0_0.0.8-2+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/liblsan0_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libperl5.42_5.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libssl-dev_3.6.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libunistring5_1.4.2-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpython3.14-stdlib_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libgnutls30t64_3.8.13-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libidn2-dev_2.3.8-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libssl3t64_3.6.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/make_4.4.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libngtcp2-crypto-gnutls8_1.24.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libnghttp2-dev_1.70.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libitm1_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libncursesw6_6.6+20260608-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libgssapi-krb5-2_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libnghttp2-14_1.70.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libzstd-dev_1.5.7+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libk5crypto3_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libtool_2.6.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libgssrpc4t64_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libubsan1_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libquadmath0_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libmount1_2.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libtsan2_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libhts-dev_1.22.1+ds2-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libstdc++-16-dev_16.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libjansson4_2.15.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libmd0_1.2.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpython3.14-minimal_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libncurses6_6.6+20260608-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpython3-stdlib_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libngtcp2-dev_1.24.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpam-runtime_1.7.0-8_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libidn2-0_2.3.8-5_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libsmartcols1_2.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libgomp1_16.2.0-2_ppc64el.deb' dpkg-name: info: moved 'libmagic-mgc_1%3a5.47-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpvwci3qbe/libmagic-mgc_5.47-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpython3.14_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/liblzma5_5.8.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libtinfo6_6.6+20260608-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libp11-kit-dev_0.26.5-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpam-modules-bin_1.7.0-8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libsasl2-2_2.1.28+dfsg1-11_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libuuid1_2.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libkrb5-3_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpipeline1_1.5.8-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libzstd1_1.5.7+dfsg-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpam-modules_1.7.0-8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libkdb5-10t64_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpam0g_1.7.0-8_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libldap-dev_2.6.14+dfsg-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/m4_1.4.21-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpsl-dev_0.23.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libseccomp2_2.6.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libkrb5-dev_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libssh2-1t64_1.11.1-6_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libngtcp2-16_1.24.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libunbound8_1.26.0-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libp11-kit0_0.26.5-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libxml2-16_2.15.3+dfsg-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libtasn1-6_4.21.0-2+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libsasl2-modules-db_2.1.28+dfsg1-11_ppc64el.deb' dpkg-name: info: moved 'libmagic1t64_1%3a5.47-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpvwci3qbe/libmagic1t64_5.47-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libudev1_262~rc1-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libhtscodecs2_1.6.6-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libsqlite3-0_3.53.4-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/librtmp-dev_2.6-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libnghttp3-dev_1.17.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/liblzma-dev_5.8.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libngtcp2-crypto-gnutls-dev_1.24.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libjs-sphinxdoc_9.1.0-7_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libkrb5support0_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libtasn1-6-dev_4.21.0-2+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libmpc3_1.3.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libkadm5clnt-mit12_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libmpfr6_4.2.2-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/linux-libc-dev_7.1.12-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libpcre2-8-0_10.48-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libldap2_2.6.14+dfsg-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libisl23_0.28-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libsystemd0_262~rc1-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libhogweed6t64_3.10.2-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libsframe3_2.47-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/man-db_2.13.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libkadm5srv-mit12_1.22.1-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libhts3t64_1.22.1+ds2-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libssh2-1-dev_1.11.1-6_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libnghttp3-9_1.17.0-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwci3qbe/libkeyutils1_1.6.3-6+b2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el python3-jaraco.context all 6.0.1-2 [8184 B] Get:2 http://deb.debian.org/debian unstable/main ppc64el python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:3 http://deb.debian.org/debian unstable/main ppc64el media-types all 14.0.0 [30.8 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el ncurses-base all 6.6+20260608-2 [276 kB] Get:5 http://deb.debian.org/debian unstable/main ppc64el ncurses-bin ppc64el 6.6+20260608-2 [450 kB] Get:6 http://deb.debian.org/debian unstable/main ppc64el netbase all 6.6 [10.3 kB] Get:7 http://deb.debian.org/debian unstable/main ppc64el nettle-dev ppc64el 3.10.2-1+b1 [1353 kB] Get:8 http://deb.debian.org/debian unstable/main ppc64el patch ppc64el 2.8-2 [141 kB] Get:9 http://deb.debian.org/debian unstable/main ppc64el perl ppc64el 5.42.3-1 [266 kB] Get:10 http://deb.debian.org/debian unstable/main ppc64el perl-base ppc64el 5.42.3-1 [1867 kB] Get:11 http://deb.debian.org/debian unstable/main ppc64el perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:12 http://deb.debian.org/debian unstable/main ppc64el pkgconf ppc64el 2.5.1-4 [33.6 kB] Get:13 http://deb.debian.org/debian unstable/main ppc64el pkgconf-bin ppc64el 2.5.1-4 [36.3 kB] Get:14 http://deb.debian.org/debian unstable/main ppc64el po-debconf all 1.0.22 [216 kB] Get:15 http://deb.debian.org/debian unstable/main ppc64el python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:16 http://deb.debian.org/debian unstable/main ppc64el python3-pytest all 9.1.1-1 [280 kB] Get:17 http://deb.debian.org/debian unstable/main ppc64el python3-autocommand all 2.2.2-4 [13.7 kB] Get:18 http://deb.debian.org/debian unstable/main ppc64el python3-inflect all 7.5.0-2 [32.8 kB] Get:19 http://deb.debian.org/debian unstable/main ppc64el python3-iniconfig all 2.1.0-2 [7540 B] Get:20 http://deb.debian.org/debian unstable/main ppc64el python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:21 http://deb.debian.org/debian unstable/main ppc64el python3-pluggy all 1.6.0-2 [27.2 kB] Get:22 http://deb.debian.org/debian unstable/main ppc64el python3-typeguard all 4.4.4-3 [37.1 kB] Get:23 http://deb.debian.org/debian unstable/main ppc64el python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:24 http://deb.debian.org/debian unstable/main ppc64el python3 ppc64el 3.14.7-3 [26.0 kB] Get:25 http://deb.debian.org/debian unstable/main ppc64el python3-all ppc64el 3.14.7-3 [984 B] Get:26 http://deb.debian.org/debian unstable/main ppc64el python3-all-dev ppc64el 3.14.7-3 [1008 B] Get:27 http://deb.debian.org/debian unstable/main ppc64el python3-dev ppc64el 3.14.7-3 [26.7 kB] Get:28 http://deb.debian.org/debian unstable/main ppc64el python3-minimal ppc64el 3.14.7-3 [25.3 kB] Get:29 http://deb.debian.org/debian unstable/main ppc64el readline-common all 8.3-4 [74.8 kB] Get:30 http://deb.debian.org/debian unstable/main ppc64el sed ppc64el 4.9-3 [335 kB] Get:31 http://deb.debian.org/debian unstable/main ppc64el sensible-utils all 0.0.26 [27.0 kB] Get:32 http://deb.debian.org/debian unstable/main ppc64el python3-pkg-resources all 80.9.0-2 [224 kB] Get:33 http://deb.debian.org/debian unstable/main ppc64el sysvinit-utils ppc64el 3.18-1 [31.9 kB] Get:34 http://deb.debian.org/debian unstable/main ppc64el tzdata all 2026c-1 [260 kB] Get:35 http://deb.debian.org/debian unstable/main ppc64el zlib1g ppc64el 1:1.3.dfsg+really1.3.2-3 [90.4 kB] Get:36 http://deb.debian.org/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:37 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el tabix ppc64el 1.22.1+ds2-1+b2 [541 kB] Get:38 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el mawk ppc64el 1.3.4.20260302-1 [145 kB] Get:39 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el python3-more-itertools all 11.1.0-2 [74.5 kB] Get:40 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el openssl-provider-legacy ppc64el 3.6.4-1 [328 kB] Get:41 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el python3-packaging all 26.2-2 [84.2 kB] Get:42 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el python3-zipp all 3.23.0-1 [11.0 kB] Get:43 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el python3.14 ppc64el 3.14.7-1 [861 kB] Get:44 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el python3.14-dev ppc64el 3.14.7-1 [516 kB] Get:45 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el python3.14-minimal ppc64el 3.14.7-1 [2597 kB] Get:46 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el samtools ppc64el 1.22.1-1 [724 kB] Get:47 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el python3-setuptools all 80.9.0-2 [698 kB] Get:48 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el tar ppc64el 1.35+dfsg-5 [848 kB] Get:49 http://snapshot.debian.org/archive/debian/20260903T204250Z unstable/main ppc64el xz-utils ppc64el 5.8.3-1 [742 kB] Get:50 http://snapshot.debian.org/archive/debian/20260905T205002Z unstable/main ppc64el util-linux ppc64el 2.42.3-1 [1338 kB] Fetched 20.8 MB in 2s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-pluggy_1.6.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/readline-common_8.3-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3.14-dev_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-dev_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/nettle-dev_3.10.2-1+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/patch_2.8-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/mawk_1.3.4.20260302-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/pkgconf-bin_2.5.1-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/tzdata_2026c-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/sensible-utils_0.0.26_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/tar_1.35+dfsg-5_ppc64el.deb' dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphdtqp1dh/zlib1g_1.3.dfsg+really1.3.2-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/samtools_1.22.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/media-types_14.0.0_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-all-dev_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3.14_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-packaging_26.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/pkgconf_2.5.1-4_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/ncurses-base_6.6+20260608-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-inflect_7.5.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/po-debconf_1.0.22_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-iniconfig_2.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/sed_4.9-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/xz-utils_5.8.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/perl_5.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-zipp_3.23.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/sysvinit-utils_3.18-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/tabix_1.22.1+ds2-1+b2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-pytest_9.1.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/ncurses-bin_6.6+20260608-2_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/netbase_6.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/perl-base_5.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-all_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/perl-modules-5.42_5.42.3-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-autocommand_2.2.2-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/openssl-provider-legacy_3.6.4-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/util-linux_2.42.3-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3.14-minimal_3.14.7-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-more-itertools_11.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-jaraco.text_4.0.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-setuptools_80.9.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-pkg-resources_80.9.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-minimal_3.14.7-3_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-jaraco.context_6.0.1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-typeguard_4.4.4-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-jaraco.functools_4.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-typing-extensions_4.16.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdtqp1dh/python3-pygments_2.20.0+dfsg-2_all.deb' dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphdtqp1dh/zlib1g-dev_1.3.dfsg+really1.3.2-3_ppc64el.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_ppc64el.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_ppc64el.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmphwiajxl8/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture ppc64el is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.gsY0Ts6CjC as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.gsY0Ts6CjC 127.0.0.1 - - [01/Oct/2026 10:57:19] code 404, message File not found 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33089 ./ InRelease 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:33089 ./ Release [462 B] 127.0.0.1 - - [01/Oct/2026 10:57:19] code 404, message File not found 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33089 ./ Release.gpg 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:33089 ./ Packages [303 kB] Fetched 304 kB in 0s (20.1 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./gcc-16-base_16.2.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./libc-gconv-modules-extra_2.43-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./libc6_2.43-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./libgcc-s1_16.2.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./mawk_1.3.4.20260302-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./base-files_14.2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./libtinfo6_6.6%2b20260608-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./debianutils_5.24_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:19] "GET /./bash_5.3-3%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libacl1_2.4.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libattr1_2.6.0-1_ppc64el.deb HTTP/1.1" 200 - 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127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./perl-base_5.42.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./sed_4.9-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libcap-ng0_0.9.5-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libaudit1_4.1.2-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libdb5.3t64_5.3.28%2bdfsg2-11%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./debconf_1.5.92_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libpam0g_1.7.0-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libpam-modules-bin_1.7.0-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libpam-modules_1.7.0-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libpam-runtime_1.7.0-8_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libblkid1_2.42.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libmount1_2.42.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libsmartcols1_2.42.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libudev1_262%7erc1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libuuid1_2.42.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./util-linux_2.42.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libdebconfclient0_0.283_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./base-passwd_3.6.8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./init-system-helpers_1.69%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./libc-bin_2.43-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./ncurses-base_6.6%2b20260608-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:20] "GET /./sysvinit-utils_3.18-1_ppc64el.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.gsY0Ts6CjC 127.0.0.1 - - [01/Oct/2026 10:57:22] code 404, message File not found 127.0.0.1 - - [01/Oct/2026 10:57:22] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33089 ./ InRelease 127.0.0.1 - - [01/Oct/2026 10:57:22] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:33089 ./ Release 127.0.0.1 - - [01/Oct/2026 10:57:22] code 404, message File not found 127.0.0.1 - - [01/Oct/2026 10:57:22] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33089 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libgssrpc4t64_1.22.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libkadm5clnt-mit12_1.22.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libkdb5-10t64_1.22.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libkadm5srv-mit12_1.22.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./krb5-multidev_1.22.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libexpat1-dev_2.8.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./python3-more-itertools_11.1.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libbz2-dev_1.0.8-6%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libncurses6_6.6%2b20260608-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libpython3.14_3.14.7-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./zlib1g-dev_1.3.dfsg%2breally1.3.2-3_ppc64el.deb HTTP/1.1" 200 - 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127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libngtcp2-dev_1.24.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libunistring-dev_1.4.2-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libpsl-dev_0.23.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libssl-dev_3.6.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libssh2-1-dev_1.11.1-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libzstd-dev_1.5.7%2bdfsg-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libcurl4-gnutls-dev_8.22.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./python3-jaraco.text_4.0.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./python3-setuptools_80.9.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libpython3-dev_3.14.7-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libpython3-all-dev_3.14.7-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./python3-pluggy_1.6.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libjs-sphinxdoc_9.1.0-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./python3-all_3.14.7-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./python3-dev_3.14.7-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./python3-all-dev_3.14.7-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./tabix_1.22.1%2bds2-1%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./python3-pygments_2.20.0%2bdfsg-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libdeflate-dev_1.25-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./python3-iniconfig_2.1.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./python3-pytest_9.1.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./dh-python_7.20260623_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./liblzma-dev_5.8.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./libhts-dev_1.22.1%2bds2-1%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Oct/2026 10:57:31] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmphwiajxl8/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.gsY0Ts6CjC Reading package lists... Building dependency tree... Reading state information... comerr-dev is already the newest version (2.1-1.47.4-1+b1). comerr-dev set to manually installed. libc-bin is already the newest version (2.43-4). coreutils is already the newest version (9.10-1). libc6 is already the newest version (2.43-4). automake is already the newest version (1:1.18.1-4). automake set to manually installed. libdebconfclient0 is already the newest version (0.283). cpp-16-powerpc64le-linux-gnu is already the newest version (16.2.0-2). cpp-16-powerpc64le-linux-gnu set to manually installed. libblkid1 is already the newest version (2.42.3-1). dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. libbinutils is already the newest version (2.47-2). libbinutils set to manually installed. autopoint is already the newest version (1.0-3). autopoint set to manually installed. libcurl3t64-gnutls is already the newest version (8.22.0-1). libcurl3t64-gnutls set to manually installed. libattr1 is already the newest version (1:2.6.0-1). g++-16-powerpc64le-linux-gnu is already the newest version (16.2.0-2). g++-16-powerpc64le-linux-gnu set to manually installed. gcc-16-powerpc64le-linux-gnu is already the newest version (16.2.0-2). gcc-16-powerpc64le-linux-gnu set to manually installed. cython3 is already the newest version (3.1.6+dfsg-3). cython3 set to manually installed. libcrypt1 is already the newest version (1:4.5.2+20251210-1). libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5+b2). libgmpxx4ldbl set to manually installed. gcc is already the newest version (4:16.1.0-3). gcc set to manually installed. g++-16 is already the newest version (16.2.0-2). g++-16 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). diffutils is already the newest version (1:3.12-1). autoconf is already the newest version (2.73-2). autoconf set to manually installed. libc-dev-bin is already the newest version (2.43-4). libc-dev-bin set to manually installed. libexpat1-dev is already the newest version (2.8.4-1). libexpat1-dev set to manually installed. libacl1 is already the newest version (2.4.0-1). bcftools is already the newest version (1.22-1). bcftools set to manually installed. gettext-base is already the newest version (1.0-3). gettext-base set to manually installed. groff-base is already the newest version (1.24.1-1). groff-base set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. libelf1t64 is already the newest version (0.196-1). libelf1t64 set to manually installed. libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. libcap-ng0 is already the newest version (0.9.5-1). libdebhelper-perl is already the newest version (14.3). libdebhelper-perl set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. krb5-multidev is already the newest version (1.22.1-3). krb5-multidev set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). libfile-stripnondeterminism-perl is already the newest version (1.15.1-1). libfile-stripnondeterminism-perl set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.1-1). dh-strip-nondeterminism set to manually installed. libcurl4-gnutls-dev is already the newest version (8.22.0-1). libcurl4-gnutls-dev set to manually installed. base-passwd is already the newest version (3.6.8). cpp is already the newest version (4:16.1.0-3). cpp set to manually installed. debconf is already the newest version (1.5.92). file is already the newest version (1:5.47-4). file set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.13-stable-1). libevent-2.1-7t64 set to manually installed. gcc-powerpc64le-linux-gnu is already the newest version (4:16.1.0-3). gcc-powerpc64le-linux-gnu set to manually installed. libffi8 is already the newest version (3.8.0-2). libffi8 set to manually installed. libgcc-16-dev is already the newest version (16.2.0-2). libgcc-16-dev set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. libgnutls28-dev is already the newest version (3.8.13-1). libgnutls28-dev set to manually installed. findutils is already the newest version (4.11.0-2). build-essential is already the newest version (12.12). build-essential set to manually installed. grep is already the newest version (3.12-1). libc6-dev is already the newest version (2.43-4). libc6-dev set to manually installed. dh-python is already the newest version (7.20260623). dh-python set to manually installed. bsdextrautils is already the newest version (2.42.3-1). bsdextrautils set to manually installed. libasan8 is already the newest version (16.2.0-2). libasan8 set to manually installed. libbrotli-dev is already the newest version (1.2.0-4+b1). libbrotli-dev set to manually installed. libcom-err2 is already the newest version (1.47.4-1+b1). libcom-err2 set to manually installed. init-system-helpers is already the newest version (1.69+nmu1). binutils-common is already the newest version (2.47-2). binutils-common set to manually installed. libexpat1 is already the newest version (2.8.4-1). libexpat1 set to manually installed. cpp-16 is already the newest version (16.2.0-2). cpp-16 set to manually installed. libdeflate0 is already the newest version (1.25-1). libdeflate0 set to manually installed. libbz2-dev is already the newest version (1.0.8-6+b2). libbz2-dev set to manually installed. gzip is already the newest version (1.14-1). libgmp-dev is already the newest version (2:6.3.0+dfsg-5+b2). libgmp-dev set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. cpp-powerpc64le-linux-gnu is already the newest version (4:16.1.0-3). cpp-powerpc64le-linux-gnu set to manually installed. gettext is already the newest version (1.0-3). gettext set to manually installed. debianutils is already the newest version (5.24). bash is already the newest version (5.3-3+b1). libctf-nobfd0 is already the newest version (2.47-2). libctf-nobfd0 set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.13-1). libgnutls-dane0t64 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b2). libgcc-s1 is already the newest version (16.2.0-2). g++ is already the newest version (4:16.1.0-3). g++ set to manually installed. dash is already the newest version (0.5.12-12). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libctf0 is already the newest version (2.47-2). libctf0 set to manually installed. libatomic1 is already the newest version (16.2.0-2). libatomic1 set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b1). libdeflate-dev is already the newest version (1.25-1). libdeflate-dev set to manually installed. dwz is already the newest version (0.17-1). dwz set to manually installed. g++-powerpc64le-linux-gnu is already the newest version (4:16.1.0-3). g++-powerpc64le-linux-gnu set to manually installed. libbrotli1 is already the newest version (1.2.0-4+b1). libbrotli1 set to manually installed. libcc1-0 is already the newest version (16.2.0-2). libcc1-0 set to manually installed. binutils is already the newest version (2.47-2). binutils set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). gcc-16 is already the newest version (16.2.0-2). gcc-16 set to manually installed. libcurl4-gnutls is already the newest version (8.22.0-1). libcurl4-gnutls set to manually installed. debhelper is already the newest version (14.3). debhelper set to manually installed. hostname is already the newest version (3.25). base-files is already the newest version (14.2). intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. binutils-powerpc64le-linux-gnu is already the newest version (2.47-2). binutils-powerpc64le-linux-gnu set to manually installed. gcc-16-base is already the newest version (16.2.0-2). dpkg is already the newest version (1.23.7). libc-gconv-modules-extra is already the newest version (2.43-4). libpsl5t64 is already the newest version (0.23.3-1). libpsl5t64 set to manually installed. libunistring-dev is already the newest version (1.4.2-1). libunistring-dev set to manually installed. libstdc++6 is already the newest version (16.2.0-2). libstdc++6 set to manually installed. libpython3.14-dev is already the newest version (3.14.7-1). libpython3.14-dev set to manually installed. libpython3-dev is already the newest version (3.14.7-3). libpython3-dev set to manually installed. libpython3-all-dev is already the newest version (3.14.7-3). libpython3-all-dev set to manually installed. librtmp1 is already the newest version (2.6-1). librtmp1 set to manually installed. libpkgconf7 is already the newest version (2.5.1-4). libpkgconf7 set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libselinux1 is already the newest version (3.11-2). libnettle8t64 is already the newest version (3.10.2-1+b1). libnettle8t64 set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. liblsan0 is already the newest version (16.2.0-2). liblsan0 set to manually installed. libperl5.42 is already the newest version (5.42.3-1). libperl5.42 set to manually installed. libssl-dev is already the newest version (3.6.4-1). libssl-dev set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. libpython3.14-stdlib is already the newest version (3.14.7-1). libpython3.14-stdlib set to manually installed. libgnutls30t64 is already the newest version (3.8.13-1). libgnutls30t64 set to manually installed. libidn2-dev is already the newest version (2.3.8-5). libidn2-dev set to manually installed. libssl3t64 is already the newest version (3.6.4-1). make is already the newest version (4.4.1-3). make set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.24.0-1). libngtcp2-crypto-gnutls8 set to manually installed. libnghttp2-dev is already the newest version (1.70.0-1). libnghttp2-dev set to manually installed. libmagic-mgc is already the newest version (1:5.47-4). libmagic-mgc set to manually installed. libitm1 is already the newest version (16.2.0-2). libitm1 set to manually installed. libncursesw6 is already the newest version (6.6+20260608-2). libncursesw6 set to manually installed. libgssapi-krb5-2 is already the newest version (1.22.1-3). libgssapi-krb5-2 set to manually installed. libnghttp2-14 is already the newest version (1.70.0-1). libnghttp2-14 set to manually installed. libzstd-dev is already the newest version (1.5.7+dfsg-4). libzstd-dev set to manually installed. libk5crypto3 is already the newest version (1.22.1-3). libk5crypto3 set to manually installed. libtool is already the newest version (2.6.2-2). libtool set to manually installed. libgssrpc4t64 is already the newest version (1.22.1-3). libgssrpc4t64 set to manually installed. libubsan1 is already the newest version (16.2.0-2). libubsan1 set to manually installed. libquadmath0 is already the newest version (16.2.0-2). libquadmath0 set to manually installed. libmount1 is already the newest version (2.42.3-1). libtsan2 is already the newest version (16.2.0-2). libtsan2 set to manually installed. libhts-dev is already the newest version (1.22.1+ds2-1+b2). libhts-dev set to manually installed. libstdc++-16-dev is already the newest version (16.2.0-2). libstdc++-16-dev set to manually installed. libjansson4 is already the newest version (2.15.1-1). libjansson4 set to manually installed. libmd0 is already the newest version (1.2.0-2). libpython3.14-minimal is already the newest version (3.14.7-1). libpython3.14-minimal set to manually installed. libncurses6 is already the newest version (6.6+20260608-2). libncurses6 set to manually installed. libpython3-stdlib is already the newest version (3.14.7-3). libpython3-stdlib set to manually installed. libngtcp2-dev is already the newest version (1.24.0-1). libngtcp2-dev set to manually installed. libpam-runtime is already the newest version (1.7.0-8). libidn2-0 is already the newest version (2.3.8-5). libidn2-0 set to manually installed. libsmartcols1 is already the newest version (2.42.3-1). libgomp1 is already the newest version (16.2.0-2). libgomp1 set to manually installed. libpython3.14 is already the newest version (3.14.7-1). libpython3.14 set to manually installed. liblzma5 is already the newest version (5.8.3-1). libtinfo6 is already the newest version (6.6+20260608-2). libp11-kit-dev is already the newest version (0.26.5-1). libp11-kit-dev set to manually installed. libpam-modules-bin is already the newest version (1.7.0-8). libsasl2-2 is already the newest version (2.1.28+dfsg1-11). libsasl2-2 set to manually installed. libuuid1 is already the newest version (2.42.3-1). libkrb5-3 is already the newest version (1.22.1-3). libkrb5-3 set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-4). libpam-modules is already the newest version (1.7.0-8). libkdb5-10t64 is already the newest version (1.22.1-3). libkdb5-10t64 set to manually installed. libpam0g is already the newest version (1.7.0-8). libldap-dev is already the newest version (2.6.14+dfsg-2). libldap-dev set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. libpsl-dev is already the newest version (0.23.3-1). libpsl-dev set to manually installed. libseccomp2 is already the newest version (2.6.1-1). libseccomp2 set to manually installed. libkrb5-dev is already the newest version (1.22.1-3). libkrb5-dev set to manually installed. libssh2-1t64 is already the newest version (1.11.1-6). libssh2-1t64 set to manually installed. libngtcp2-16 is already the newest version (1.24.0-1). libngtcp2-16 set to manually installed. libunbound8 is already the newest version (1.26.0-2). libunbound8 set to manually installed. libp11-kit0 is already the newest version (0.26.5-1). libp11-kit0 set to manually installed. libxml2-16 is already the newest version (2.15.3+dfsg-1+b1). libxml2-16 set to manually installed. libtasn1-6 is already the newest version (4.21.0-2+b1). libtasn1-6 set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-11). libsasl2-modules-db set to manually installed. libudev1 is already the newest version (262~rc1-2). libhtscodecs2 is already the newest version (1.6.6-1). libhtscodecs2 set to manually installed. libsqlite3-0 is already the newest version (3.53.4-2). libsqlite3-0 set to manually installed. librtmp-dev is already the newest version (2.6-1). librtmp-dev set to manually installed. libnghttp3-dev is already the newest version (1.17.0-1). libnghttp3-dev set to manually installed. liblzma-dev is already the newest version (5.8.3-1). liblzma-dev set to manually installed. libngtcp2-crypto-gnutls-dev is already the newest version (1.24.0-1). libngtcp2-crypto-gnutls-dev set to manually installed. libjs-sphinxdoc is already the newest version (9.1.0-7). libjs-sphinxdoc set to manually installed. libkrb5support0 is already the newest version (1.22.1-3). libkrb5support0 set to manually installed. libtasn1-6-dev is already the newest version (4.21.0-2+b1). libtasn1-6-dev set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. libkadm5clnt-mit12 is already the newest version (1.22.1-3). libkadm5clnt-mit12 set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. linux-libc-dev is already the newest version (7.1.12-1). linux-libc-dev set to manually installed. libpcre2-8-0 is already the newest version (10.48-2). libldap2 is already the newest version (2.6.14+dfsg-2). libldap2 set to manually installed. libisl23 is already the newest version (0.28-1). libisl23 set to manually installed. libsystemd0 is already the newest version (262~rc1-2). libhogweed6t64 is already the newest version (3.10.2-1+b1). libhogweed6t64 set to manually installed. libsframe3 is already the newest version (2.47-2). libsframe3 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libkadm5srv-mit12 is already the newest version (1.22.1-3). libkadm5srv-mit12 set to manually installed. libhts3t64 is already the newest version (1.22.1+ds2-1+b2). libhts3t64 set to manually installed. libssh2-1-dev is already the newest version (1.11.1-6). libssh2-1-dev set to manually installed. libmagic1t64 is already the newest version (1:5.47-4). libmagic1t64 set to manually installed. libnghttp3-9 is already the newest version (1.17.0-1). libnghttp3-9 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6+b2). libkeyutils1 set to manually installed. python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. python3.14-dev is already the newest version (3.14.7-1). python3.14-dev set to manually installed. python3-dev is already the newest version (3.14.7-3). python3-dev set to manually installed. nettle-dev is already the newest version (3.10.2-1+b1). nettle-dev set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. mawk is already the newest version (1.3.4.20260302-1). pkgconf-bin is already the newest version (2.5.1-4). pkgconf-bin set to manually installed. tzdata is already the newest version (2026c-1). tzdata set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. tar is already the newest version (1.35+dfsg-5). samtools is already the newest version (1.22.1-1). samtools set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. python3-all-dev is already the newest version (3.14.7-3). python3-all-dev set to manually installed. python3.14 is already the newest version (3.14.7-1). python3.14 set to manually installed. python3 is already the newest version (3.14.7-3). python3 set to manually installed. python3-packaging is already the newest version (26.2-2). python3-packaging set to manually installed. pkgconf is already the newest version (2.5.1-4). pkgconf set to manually installed. ncurses-base is already the newest version (6.6+20260608-2). python3-inflect is already the newest version (7.5.0-2). python3-inflect set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. sed is already the newest version (4.9-3). xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. perl is already the newest version (5.42.3-1). perl set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. sysvinit-utils is already the newest version (3.18-1). tabix is already the newest version (1.22.1+ds2-1+b2). tabix set to manually installed. python3-pytest is already the newest version (9.1.1-1). python3-pytest set to manually installed. ncurses-bin is already the newest version (6.6+20260608-2). zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). netbase is already the newest version (6.6). netbase set to manually installed. perl-base is already the newest version (5.42.3-1). python3-all is already the newest version (3.14.7-3). python3-all set to manually installed. perl-modules-5.42 is already the newest version (5.42.3-1). perl-modules-5.42 set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. openssl-provider-legacy is already the newest version (3.6.4-1). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. util-linux is already the newest version (2.42.3-1). python3.14-minimal is already the newest version (3.14.7-1). python3.14-minimal set to manually installed. python3-more-itertools is already the newest version (11.1.0-2). python3-more-itertools set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. python3-setuptools is already the newest version (80.9.0-2). python3-setuptools set to manually installed. python3-pkg-resources is already the newest version (80.9.0-2). python3-pkg-resources set to manually installed. python3-minimal is already the newest version (3.14.7-3). python3-minimal set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. python3-typeguard is already the newest version (4.4.4-3). python3-typeguard set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. python3-typing-extensions is already the newest version (4.16.0-5). python3-typing-extensions set to manually installed. python3-pygments is already the newest version (2.20.0+dfsg-2). python3-pygments set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.gsY0Ts6CjC (Reading database ... 19007 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.gsY0Ts6CjC I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.gsY0Ts6CjC I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.gsY0Ts6CjC... I: success in 52.0102 seconds Downloading packages 1to 100 out of 250 Downloading packages 101to 200 out of 250 Downloading packages 201to 250 out of 250 env --chdir=/srv/rebuilderd/tmp/rebuilderdZXJjmO/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1763125847 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuild5IvYgW/debrebuild.sbuildrc.avdMYv3pk95l sbuild --build=ppc64el --host=ppc64el --arch-any --no-arch-all --binNMU-changelog= python-pysam (0.23.3+ds-2+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for ppc64el; no source changes. * Rebuild without Python 3.13 -- ppc64el Build Daemon (ppc64el-osuosl-02) Fri, 14 Nov 2025 13:10:47 +0000 --chroot=/srv/rebuilderd/tmp/debrebuild5IvYgW/debrebuild.tar.ni2sY3x28kBu --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=python-pysam-0.23.3+ds /srv/rebuilderd/tmp/rebuilderdZXJjmO/inputs/python-pysam_0.23.3+ds-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on osuosl7-ppc64el.debian.net +==============================================================================+ | python-pysam 0.23.3+ds-2+b2 (ppc64el) Thu, 01 Oct 2026 10:58:12 +0000 | +==============================================================================+ Package: python-pysam Version: 0.23.3+ds-2+b2 Source Version: 0.23.3+ds-2 Distribution: unstable Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuild5IvYgW/debrebuild.tar.ni2sY3x28kBu to /srv/rebuilderd/tmp/tmp.sbuild.1IgHq67PHm... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Thu, 01 Oct 2026 10:58:18 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdZXJjmO/inputs/python-pysam_0.23.3+ds-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdZXJjmO/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 01 Oct 2026 10:58:19 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-KDJhlW/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Thu, 01 Oct 2026 10:58:22 +0000 | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Build environment Thu, 01 Oct 2026 10:58:22 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.111+deb13-powerpc64le-64k #1 SMP Debian 6.12.111-1 (2026-09-28) ppc64el (ppc64le) Toolchain package versions: binutils_2.47-2 dpkg-dev_1.23.7 g++-16_16.2.0-2 gcc-16_16.2.0-2 libc6-dev_2.43-4 libstdc++-16-dev_16.2.0-2 libstdc++6_16.2.0-2 linux-libc-dev_7.1.12-1 Package versions: autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3+b1 bcftools_1.22-1 binutils_2.47-2 binutils-common_2.47-2 binutils-powerpc64le-linux-gnu_2.47-2 bsdextrautils_2.42.3-1 build-essential_12.12 bzip2_1.0.8-6+b2 comerr-dev_2.1-1.47.4-1+b1 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-2 cpp-16-powerpc64le-linux-gnu_16.2.0-2 cpp-powerpc64le-linux-gnu_4:16.1.0-3 cython3_3.1.6+dfsg-3 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debianutils_5.24 dh-autoreconf_22 dh-python_7.20260623 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 g++_4:16.1.0-3 g++-16_16.2.0-2 g++-16-powerpc64le-linux-gnu_16.2.0-2 g++-powerpc64le-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-2 gcc-16-base_16.2.0-2 gcc-16-powerpc64le-linux-gnu_16.2.0-2 gcc-powerpc64le-linux-gnu_4:16.1.0-3 gettext_1.0-3 gettext-base_1.0-3 grep_3.12-1 groff-base_1.24.1-1 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu1 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.22.1-3 libacl1_2.4.0-1 libarchive-zip-perl_1.68-1 libasan8_16.2.0-2 libatomic1_16.2.0-2 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.47-2 libblkid1_2.42.3-1 libbrotli-dev_1.2.0-4+b1 libbrotli1_1.2.0-4+b1 libbz2-1.0_1.0.8-6+b2 libbz2-dev_1.0.8-6+b2 libc-bin_2.43-4 libc-dev-bin_2.43-4 libc-gconv-modules-extra_2.43-4 libc6_2.43-4 libc6-dev_2.43-4 libcap-ng0_0.9.5-1 libcc1-0_16.2.0-2 libcom-err2_1.47.4-1+b1 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-2 libctf0_2.47-2 libcurl3t64-gnutls_8.22.0-1 libcurl4-gnutls_8.22.0-1 libcurl4-gnutls-dev_8.22.0-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdeflate-dev_1.25-1 libdeflate0_1.25-1 libdpkg-perl_1.23.7 libelf1t64_0.196-1 libevent-2.1-7t64_2.1.13-stable-1 libexpat1_2.8.4-1 libexpat1-dev_2.8.4-1 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-2 libgcc-s1_16.2.0-2 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp-dev_2:6.3.0+dfsg-5+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgmpxx4ldbl_2:6.3.0+dfsg-5+b2 libgnutls-dane0t64_3.8.13-1 libgnutls28-dev_3.8.13-1 libgnutls30t64_3.8.13-1 libgomp1_16.2.0-2 libgssapi-krb5-2_1.22.1-3 libgssrpc4t64_1.22.1-3 libhogweed6t64_3.10.2-1+b1 libhts-dev_1.22.1+ds2-1+b2 libhts3t64_1.22.1+ds2-1+b2 libhtscodecs2_1.6.6-1 libidn2-0_2.3.8-5 libidn2-dev_2.3.8-5 libisl23_0.28-1 libitm1_16.2.0-2 libjansson4_2.15.1-1 libjs-sphinxdoc_9.1.0-7 libk5crypto3_1.22.1-3 libkadm5clnt-mit12_1.22.1-3 libkadm5srv-mit12_1.22.1-3 libkdb5-10t64_1.22.1-3 libkeyutils1_1.6.3-6+b2 libkrb5-3_1.22.1-3 libkrb5-dev_1.22.1-3 libkrb5support0_1.22.1-3 libldap-dev_2.6.14+dfsg-2 libldap2_2.6.14+dfsg-2 liblsan0_16.2.0-2 liblzma-dev_5.8.3-1 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.3-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncurses6_6.6+20260608-2 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnghttp2-14_1.70.0-1 libnghttp2-dev_1.70.0-1 libnghttp3-9_1.17.0-1 libnghttp3-dev_1.17.0-1 libngtcp2-16_1.24.0-1 libngtcp2-crypto-gnutls-dev_1.24.0-1 libngtcp2-crypto-gnutls8_1.24.0-1 libngtcp2-dev_1.24.0-1 libp11-kit-dev_0.26.5-1 libp11-kit0_0.26.5-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-2 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libpkgconf7_2.5.1-4 libpsl-dev_0.23.3-1 libpsl5t64_0.23.3-1 libpython3-all-dev_3.14.7-3 libpython3-dev_3.14.7-3 libpython3-stdlib_3.14.7-3 libpython3.14_3.14.7-1 libpython3.14-dev_3.14.7-1 libpython3.14-minimal_3.14.7-1 libpython3.14-stdlib_3.14.7-1 libquadmath0_16.2.0-2 libreadline8t64_8.3-4 librtmp-dev_2.6-1 librtmp1_2.6-1 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.1-1 libselinux1_3.11-2 libsframe3_2.47-2 libsmartcols1_2.42.3-1 libsqlite3-0_3.53.4-2 libssh2-1-dev_1.11.1-6 libssh2-1t64_1.11.1-6 libssl-dev_3.6.4-1 libssl3t64_3.6.4-1 libstdc++-16-dev_16.2.0-2 libstdc++6_16.2.0-2 libsystemd0_262~rc1-2 libtasn1-6_4.21.0-2+b1 libtasn1-6-dev_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.6.2-2 libtsan2_16.2.0-2 libubsan1_16.2.0-2 libuchardet0_0.0.8-2+b2 libudev1_262~rc1-2 libunbound8_1.26.0-2 libunistring-dev_1.4.2-1 libunistring5_1.4.2-1 libuuid1_2.42.3-1 libxml2-16_2.15.3+dfsg-1+b1 libzstd-dev_1.5.7+dfsg-4 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.1.12-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 media-types_14.0.0 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 netbase_6.6 nettle-dev_3.10.2-1+b1 openssl-provider-legacy_3.6.4-1 patch_2.8-2 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 python3_3.14.7-3 python3-all_3.14.7-3 python3-all-dev_3.14.7-3 python3-autocommand_2.2.2-4 python3-dev_3.14.7-3 python3-inflect_7.5.0-2 python3-iniconfig_2.1.0-2 python3-jaraco.context_6.0.1-2 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.14.7-3 python3-more-itertools_11.1.0-2 python3-packaging_26.2-2 python3-pkg-resources_80.9.0-2 python3-pluggy_1.6.0-2 python3-pygments_2.20.0+dfsg-2 python3-pytest_9.1.1-1 python3-setuptools_80.9.0-2 python3-typeguard_4.4.4-3 python3-typing-extensions_4.16.0-5 python3-zipp_3.23.0-1 python3.14_3.14.7-1 python3.14-dev_3.14.7-1 python3.14-minimal_3.14.7-1 readline-common_8.3-4 samtools_1.22.1-1 sed_4.9-3 sensible-utils_0.0.26 sysvinit-utils_3.18-1 tabix_1.22.1+ds2-1+b2 tar_1.35+dfsg-5 tzdata_2026c-1 util-linux_2.42.3-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Thu, 01 Oct 2026 10:58:22 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pysam Binary: python3-pysam, python-pysam-tests Architecture: any all Version: 0.23.3+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://pysam.readthedocs.org/en/latest Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/python-pysam Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix , samtools , bcftools , python3-pytest Package-List: python-pysam-tests deb python optional arch=all python3-pysam deb python optional arch=any Checksums-Sha1: 1b49a3366585afd7a0d97e4a8a76f6c6edbf8d7f 1504032 python-pysam_0.23.3+ds.orig.tar.xz 7bc9556aeedcb1571fd39804eb9968e197416f66 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Checksums-Sha256: 2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 1504032 python-pysam_0.23.3+ds.orig.tar.xz 27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Files: f901cb0c76035311780a8148d00734cb 1504032 python-pysam_0.23.3+ds.orig.tar.xz d24853188d4c0ff3160b32d4c6619401 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Dgit: 06ed25e577b1b799ea2bb4f676c9da59d516cfd3 debian archive/debian/0.23.3+ds-2 https://git.dgit.debian.org/python-pysam -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmkXLa8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr3xBAAlFUQPSpK492NL+m6/Kxsz8hlkUjE ZQW+4U8gJnyBAREXwTr/3TJJ/0moSCWDnJu2QelRPD7wW6a3ZttA++xhsbuh2+fv 1OyAGQ73stTIuw9fGcqDJFfDBAliEsUnvkUAywuXZvRqNHNVl+4m4hzsMFtjAqzv 5YrlBUqjOEN2BoY/bwZ/CdhIsQDylegmSifGUtZyBhBkjtiqeXOukhlAAXfCx2Km wdk56vI9h2+JBpjYhnHFicJaE5mJ0cjvCK1f3wKLj2sHtAU+8NHiCEOohTouTcwp fhp9JtZH2+wuse9DwGeLXBeoFPOgYtVJvo+x4batasPJi9I4GNmKhB10My/GAiVu bHH++mUj1O3uOzHIniJcX2Abgl5HzbzfkCYXkjPa2JK6EtRvVxGQkG91ii+hvbtL 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unpacking python-pysam_0.23.3+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_test_remote.patch dpkg-source: info: applying clean_less dpkg-source: info: applying skip-test-on-32-bit.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 0.23.3+ds-2+b2 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1763125847 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package python-pysam dpkg-buildpackage: info: source version 0.23.3+ds-2+b2 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by ppc64el Build Daemon (ppc64el-osuosl-02) dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean cd tests/pysam_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_auto_clean I: pybuild base:385: python3.14 setup.py clean /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running clean removing '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build' (and everything under it) 'build/bdist.linux-ppc64le' does not exist -- can't clean it 'build/scripts-3.14' does not exist -- can't clean it rm -f \ pysam/config.py \ pysam/config.h \ pysam/lib*.c \ samtools/config.h \ bcftools/config.h rm -rf pysam.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:385: python3.14 setup.py config /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:385: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running build running build_py creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/version.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include copying pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include running egg_info creating pysam.egg-info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt writing manifest file 'pysam.egg-info/SOURCES.txt' reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/conftest_cstd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/version.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4 copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools running build_ext checking for powerpc64le-linux-gnu-gcc option to enable C99 features... creating build/temp.linux-ppc64le-cpython-314/pysam powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c pysam/conftest_cstd.c -o build/temp.linux-ppc64le-cpython-314/pysam/conftest_cstd.o powerpc64le-linux-gnu-gcc option to enable C99 features: none needed Compiling pysam/libchtslib.pyx because it changed. [1/1] Cythonizing pysam/libchtslib.pyx building 'pysam.libchtslib' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/htslib_util.c -o build/temp.linux-ppc64le-cpython-314/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libchtslib.c -o build/temp.linux-ppc64le-cpython-314/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/htslib_util.o build/temp.linux-ppc64le-cpython-314/pysam/libchtslib.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension Compiling pysam/libcsamtools.pyx because it changed. [1/1] Cythonizing pysam/libcsamtools.pyx building 'pysam.libcsamtools' extension creating build/temp.linux-ppc64le-cpython-314/samtools creating build/temp.linux-ppc64le-cpython-314/samtools/lz4 powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcsamtools.c -o build/temp.linux-ppc64le-cpython-314/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_color.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_import.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_index.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_md.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_split.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement samtools/bam_split.c.pysam.c: In function ‘prep_sam_file’: samtools/bam_split.c.pysam.c:378:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 378 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ samtools/bam_split.c.pysam.c: In function ‘init’: samtools/bam_split.c.pysam.c:595:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 595 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bamtk.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bedcov.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bedidx.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/coverage.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/cram_size.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/cut_target.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/dict.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/faidx.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/lz4/lz4.c -o build/temp.linux-ppc64le-cpython-314/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/padding.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/phase.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/reference.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/reset.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement samtools/sam_utils.c.pysam.c: In function ‘auto_index’: samtools/sam_utils.c.pysam.c:124:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 124 | char *delim = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/sam_view.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/sample.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/samtools.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/stats.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libcsamtools.o build/temp.linux-ppc64le-cpython-314/samtools/amplicon_stats.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam2depth.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_addrprg.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_aux.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_cat.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_color.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_consensus.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_fastq.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_flags.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_import.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_index.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_lpileup.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_markdup.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_mate.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_md.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_plbuf.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_plcmd.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_quickcheck.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_reheader.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_rmdup.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_rmdupse.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_samples.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_sort.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_split.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bam_stat.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bamshuf.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bamtk.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bedcov.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/bedidx.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/consensus_pileup.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/coverage.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/cram_size.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/cut_target.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/dict.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/faidx.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/lz4/lz4.o build/temp.linux-ppc64le-cpython-314/samtools/padding.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/phase.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/reference.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/reset.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/sam_opts.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/sam_utils.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/sam_view.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/sample.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/samtools.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/stats.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/stats_isize.c.pysam.o build/temp.linux-ppc64le-cpython-314/samtools/tmp_file.c.pysam.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcftools.pyx because it changed. [1/1] Cythonizing pysam/libcbcftools.pyx building 'pysam.libcbcftools' extension creating build/temp.linux-ppc64le-cpython-314/bcftools powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/HMM.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/abuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement bcftools/bam_sample.c.pysam.c: In function ‘bam_smpl_add_bam’: bcftools/bam_sample.c.pysam.c:174:21: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 174 | char *eol = strchr(q + 3, '\n'); | ^~~~~~ powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bcftools.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bin.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/ccall.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/cols.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/consensus.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/convert.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/csq.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/dist.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/edlib.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/em.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/extsort.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/filter.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/gff.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/hclust.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/kmin.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/main.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/mcall.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/prob1.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/regidx.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/reheader.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/tabix.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/version.c.pysam.c -o build/temp.linux-ppc64le-cpython-314/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement bcftools/version.c.pysam.c: In function ‘init_index2’: bcftools/version.c.pysam.c:156:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 156 | char *delim = strstr(fname, HTS_IDX_DELIM); | ^~~~~~ powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcbcftools.c -o build/temp.linux-ppc64le-cpython-314/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/bcftools/HMM.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/abuf.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/bam2bcf.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/bam_sample.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/bcftools.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/bin.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/ccall.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/cols.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/consensus.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/convert.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/csq.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/dist.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/edlib.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/em.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/extsort.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/filter.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/gff.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/gvcf.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/hclust.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/kmin.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/main.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/mcall.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/mpileup.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/ploidy.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/prob1.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/read_consensus.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/regidx.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/reheader.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/smpl_ilist.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/str_finder.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/tabix.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/tsv2vcf.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfannotate.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfbuf.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfcall.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfcnv.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfconcat.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfconvert.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcffilter.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfhead.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfindex.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfisec.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfmerge.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfnorm.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfplugin.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfquery.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfroh.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfsom.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfsort.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfstats.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcfview.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/vcmp.c.pysam.o build/temp.linux-ppc64le-cpython-314/bcftools/version.c.pysam.o build/temp.linux-ppc64le-cpython-314/pysam/libcbcftools.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcutils.pyx because it changed. [1/1] Cythonizing pysam/libcutils.pyx building 'pysam.libcutils' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcutils.c -o build/temp.linux-ppc64le-cpython-314/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/pysam_util.c -o build/temp.linux-ppc64le-cpython-314/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libcutils.o build/temp.linux-ppc64le-cpython-314/pysam/pysam_util.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -lcsamtools.cpython-314-powerpc64le-linux-gnu -lcbcftools.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcalignmentfile.pyx:2564:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2569:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2574:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2613:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2618:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2623:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation Compiling pysam/libcalignmentfile.pyx because it changed. [1/1] Cythonizing pysam/libcalignmentfile.pyx building 'pysam.libcalignmentfile' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcalignmentfile.c -o build/temp.linux-ppc64le-cpython-314/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libcalignmentfile.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -lcutils.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcsamfile.pyx because it changed. [1/1] Cythonizing pysam/libcsamfile.pyx building 'pysam.libcsamfile' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcsamfile.c -o build/temp.linux-ppc64le-cpython-314/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libcsamfile.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -lcutils.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcalignedsegment.pyx because it changed. [1/1] Cythonizing pysam/libcalignedsegment.pyx building 'pysam.libcalignedsegment' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcalignedsegment.c -o build/temp.linux-ppc64le-cpython-314/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libcalignedsegment.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -lcutils.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabix.pyx because it changed. [1/1] Cythonizing pysam/libctabix.pyx building 'pysam.libctabix' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libctabix.c -o build/temp.linux-ppc64le-cpython-314/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libctabix.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -lcutils.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcfaidx.pyx because it changed. [1/1] Cythonizing pysam/libcfaidx.pyx building 'pysam.libcfaidx' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcfaidx.c -o build/temp.linux-ppc64le-cpython-314/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libcfaidx.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -lcutils.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcf.pyx because it changed. [1/1] Cythonizing pysam/libcbcf.pyx building 'pysam.libcbcf' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcbcf.c -o build/temp.linux-ppc64le-cpython-314/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libcbcf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -lcutils.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbgzf.pyx because it changed. [1/1] Cythonizing pysam/libcbgzf.pyx building 'pysam.libcbgzf' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcbgzf.c -o build/temp.linux-ppc64le-cpython-314/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libcbgzf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -lcutils.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabixproxies.pyx because it changed. [1/1] Cythonizing pysam/libctabixproxies.pyx building 'pysam.libctabixproxies' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libctabixproxies.c -o build/temp.linux-ppc64le-cpython-314/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libctabixproxies.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -lcutils.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcvcf.pyx:1083:27: Unreachable code Compiling pysam/libcvcf.pyx because it changed. [1/1] Cythonizing pysam/libcvcf.pyx building 'pysam.libcvcf' extension powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcvcf.c -o build/temp.linux-ppc64le-cpython-314/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-cpython-314/pysam/libcvcf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/powerpc64le-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/powerpc64le-linux-gnu -lz -lhts -lchtslib.cpython-314-powerpc64le-linux-gnu -lcutils.cpython-314-powerpc64le-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.cpython-314-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' cd tests/pysam_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' samtools faidx ex1.fa samtools view --no-PG -bo ex1.bam -t ex1.fa.fai ex1.sam.gz samtools mpileup -f ex1.fa ex1.bam | gzip > ex1.pileup.gz [mpileup] 1 samples in 1 input files gunzip < ex1.sam.gz > ex1.sam samtools index ex1.bam samtools view --no-PG -h ex1.bam | gzip > ex2.sam.gz gunzip < ex2.sam.gz > ex2.sam samtools view --no-PG -bo ex2.bam ex2.sam samtools index ex2.bam samtools calmd --no-PG --output-fmt BAM ex2.bam ex1.fa > with_md.sam.gz [bam_fillmd1] different NM for read 'EAS139_11:7:46:695:738': 3 -> 8 [bam_fillmd1] different NM for read 'EAS218_4:1:48:9:409': 0 -> 5 [bam_fillmd1] different NM for read 'B7_591:7:200:192:373': 0 -> 5 [bam_fillmd1] different NM for read 'EAS56_65:1:163:846:223': 0 -> 5 [bam_fillmd1] different NM for read 'EAS114_30:7:283:799:560': 0 -> 5 [bam_fillmd1] different NM for read 'B7_595:4:84:802:737': 0 -> 4 [bam_fillmd1] different NM for read 'EAS51_66:5:308:400:602': 0 -> 3 [bam_fillmd1] different NM for read 'EAS54_81:2:285:367:932': 0 -> 3 [bam_fillmd1] different NM for read 'EAS114_39:1:70:147:84': 0 -> 3 [bam_fillmd1] different NM for read 'EAS56_53:1:124:243:35': 2 -> 5 [bam_fillmd1] different NM for read 'EAS1_103:2:226:302:758': 2 -> 3 [bam_fillmd1] different NM for read 'EAS114_28:6:175:705:982': 1 -> 0 [bam_fillmd1] different NM for read 'EAS51_64:4:179:389:585': 7 -> 8 [bam_fillmd1] different NM for read 'B7_589:1:122:337:968': 3 -> 2 [bam_fillmd1] different NM for read 'B7_610:4:15:805:420': 4 -> 5 [bam_fillmd1] different NM for read 'B7_591:2:279:124:41': 2 -> 4 [bam_fillmd1] different NM for read 'EAS112_32:8:89:254:332': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:7:103:731:697': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_11:2:71:83:58': 0 -> 2 [bam_fillmd1] different NM for read 'EAS192_3:4:63:5:870': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:29:1822:1881': 0 -> 2 [bam_fillmd1] different NM for read 'EAS188_7:3:15:568:42': 2 -> 1 [bam_fillmd1] different NM for read 'EAS1_95:4:176:971:874': 0 -> 1 [bam_fillmd1] different NM for read 'EAS1_99:1:34:649:318': 3 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:4:61:346:384': 3 -> 4 [bam_fillmd1] different NM for read 'B7_597:6:20:592:496': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:4:38:999:463': 2 -> 1 [bam_fillmd1] different NM for read 'EAS114_28:5:23:944:377': 0 -> 3 [bam_fillmd1] different NM for read 'EAS219_1:3:90:219:528': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_108:5:89:942:84': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:6:159:493:275': 0 -> 5 [bam_fillmd1] different NM for read 'EAS139_11:1:81:1019:558': 0 -> 5 [bam_fillmd1] different NM for read 'EAS51_62:7:162:195:761': 0 -> 4 [bam_fillmd1] different NM for read 'B7_597:3:115:646:430': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:243:209:110': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:2:266:994:429': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:5:32:461:154': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:6:7:492:1088': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_95:6:174:650:125': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:6:89:457:591': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_39:2:38:670:564': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_7:4:92:693:228': 1 -> 6 [bam_fillmd1] different NM for read 'EAS218_1:4:61:1369:440': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_26:4:123:1001:580': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:4:10:1312:1558': 0 -> 4 [bam_fillmd1] different NM for read 'EAS220_1:8:45:178:1321': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:5:125:137:58': 0 -> 4 [bam_fillmd1] different NM for read 'EAS192_3:3:285:349:797': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_45:5:56:1757:1319': 0 -> 4 [bam_fillmd1] different NM for read 'B7_591:3:291:404:199': 0 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:7:159:253:353': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_57:1:122:38:103': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_4:5:103:870:105': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:8:24:718:322': 3 -> 7 [bam_fillmd1] different NM for read 'EAS51_64:6:118:41:489': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_61:3:165:665:220': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:238:803:383': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:3:232:364:583': 0 -> 3 [bam_fillmd1] different NM for read 'B7_595:2:29:729:70': 3 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:220:809:850': 4 -> 6 [bam_fillmd1] different NM for read 'EAS54_65:2:264:157:150': 3 -> 5 [bam_fillmd1] different NM for read 'B7_595:8:26:242:35': 2 -> 1 [bam_fillmd1] different NM for read 'B7_610:7:34:144:868': 4 -> 5 [bam_fillmd1] different NM for read 'B7_597:8:147:360:141': 1 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:82:154:1333': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_63:3:41:468:459': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_97:4:274:287:423': 0 -> 1 [bam_fillmd1] different NM for read 'EAS114_30:2:303:428:326': 0 -> 1 [bam_fillmd1] different NM for read 'EAS54_71:8:105:854:975': 0 -> 3 gunzip < with_md.sam.gz > with_md.sam samtools view --no-PG -bo with_md.bam with_md.sam [W::bam_hdr_read] EOF marker is absent. The input is probably truncated samtools index with_md.bam samtools view --no-PG -bu -o uncompressed.bam ex2.sam samtools view --no-PG -bo MM-chebi.bam MM-chebi.sam samtools view --no-PG -bo MM-double.bam MM-double.sam samtools view --no-PG -bo MM-explicit.bam MM-explicit.sam samtools view --no-PG -bo MM-multi.bam MM-multi.sam samtools view --no-PG -bo MM-orient.bam MM-orient.sam samtools view --no-PG -bo ex10.bam ex10.sam samtools view --no-PG -bo ex3.bam ex3.sam samtools view --no-PG -bo ex4.bam ex4.sam samtools view --no-PG -bo ex5.bam ex5.sam samtools view --no-PG -bo ex6.bam ex6.sam samtools view --no-PG -bo ex8.bam ex8.sam samtools view --no-PG -bo ex9_fail.bam ex9_fail.sam samtools view --no-PG -bo ex9_nofail.bam ex9_nofail.sam samtools view --no-PG -bo ex_spliced.bam ex_spliced.sam samtools view --no-PG -bo example_aligned_pairs.bam example_aligned_pairs.sam samtools view --no-PG -bo example_btag.bam example_btag.sam samtools view --no-PG -bo example_dash_in_chr.bam example_dash_in_chr.sam samtools view --no-PG -bo example_empty_header.bam example_empty_header.sam samtools view --no-PG -bo example_empty_with_header.bam example_empty_with_header.sam samtools view --no-PG -bo example_reverse_complement.bam example_reverse_complement.sam touch tmp.list samtools view --no-PG -bo example_unmapped_reads_no_sq.bam -t tmp.list example_unmapped_reads_no_sq.sam rm -f tmp.list samtools view --no-PG -bo issue100.bam issue100.sam samtools view --no-PG -bo rg_with_tab.bam rg_with_tab.sam samtools view --no-PG -bo softclip.bam softclip.sam samtools view --no-PG -bo tag_bug.bam tag_bug.sam samtools view --no-PG -bo test_mapped_unmapped.bam test_mapped_unmapped.sam samtools view --no-PG -bo test_query_position.bam test_query_position.sam samtools view --no-PG -bo test_unaligned.bam test_unaligned.sam samtools index MM-chebi.bam samtools index MM-double.bam samtools index MM-explicit.bam samtools index MM-multi.bam samtools index MM-orient.bam samtools index ex10.bam samtools index ex3.bam samtools index ex4.bam samtools index ex5.bam samtools index ex6.bam samtools index ex8.bam samtools index ex9_fail.bam samtools index ex9_nofail.bam samtools index ex_spliced.bam samtools index example_aligned_pairs.bam samtools index example_btag.bam samtools index example_dash_in_chr.bam samtools index example_empty_header.bam samtools index example_empty_with_header.bam samtools index example_reverse_complement.bam samtools index example_unmapped_reads_no_sq.bam samtools index issue100.bam samtools index rg_with_tab.bam samtools index softclip.bam samtools index tag_bug.bam samtools index test_mapped_unmapped.bam samtools index test_query_position.bam samtools index test_unaligned.bam samtools view --no-PG -Co ex1.cram -T ex1.fa ex1.sam samtools view --no-PG -Co ex2.cram -T ex1.fa ex2.sam samtools view --no-PG -Co ex3.cram -T ex1.fa ex3.sam samtools index ex1.cram samtools index ex2.cram samtools index ex3.cram cp ex1.bam example_bai.bam samtools index example_bai.bam mv example_bai.bam.bai example_bai.bai dd if=ex2.bam of=ex2_truncated.bam bs=$((`wc -c < ex2.bam`-512)) count=1 1+0 records in 1+0 records out 122288 bytes (122 kB, 119 KiB) copied, 0.000161284 s, 758 MB/s (bgzip -d < ex2.bam; printf '\37\0\0\0\1\0\0\0') | bgzip > ex2_corrupt.bam grep "^@" ex2.sam | samtools view --no-PG -bo empty.bam - samtools index empty.bam cp ex1.bam explicit_index.bam cp ex1.cram explicit_index.cram gzip < faidx_empty_seq.fq > faidx_empty_seq.fq.gz bgzip < ex1.fa > ex1.fa.gz samtools faidx ex1.fa.gz cp ex1.bam ex1_csi.bam samtools index -c ex1_csi.bam touch all.stamp rm with_md.sam make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' bgzip < example_vcf40.vcf > example_vcf40.vcf.gz tabix -f -p vcf example_vcf40.vcf.gz # create tbi index bcftools index -f example_vcf40.vcf.gz # create csi index bgzip < example_vcf42.vcf > example_vcf42.vcf.gz tabix -f -p vcf example_vcf42.vcf.gz # create tbi index bcftools index -f example_vcf42.vcf.gz # create csi index bgzip < example_vcf42_only_header.vcf > example_vcf42_only_header.vcf.gz tabix -f -p vcf example_vcf42_only_header.vcf.gz # create tbi index bcftools index -f example_vcf42_only_header.vcf.gz # create csi index bgzip < example_vcf42_withcontigs.vcf > example_vcf42_withcontigs.vcf.gz tabix -f -p vcf example_vcf42_withcontigs.vcf.gz # create tbi index bcftools index -f example_vcf42_withcontigs.vcf.gz # create csi index bgzip < example_vcf43.vcf > example_vcf43.vcf.gz tabix -f -p vcf example_vcf43.vcf.gz # create tbi index bcftools index -f example_vcf43.vcf.gz # create csi index bgzip < example_vcf43_with_utf8.vcf > example_vcf43_with_utf8.vcf.gz tabix -f -p vcf example_vcf43_with_utf8.vcf.gz # create tbi index bcftools index -f example_vcf43_with_utf8.vcf.gz # create csi index bgzip < gnomad.vcf > gnomad.vcf.gz tabix -f -p vcf gnomad.vcf.gz # create tbi index bcftools index -f gnomad.vcf.gz # create csi index bgzip < gnomad_fixed.vcf > gnomad_fixed.vcf.gz tabix -f -p vcf gnomad_fixed.vcf.gz # create tbi index bcftools index -f gnomad_fixed.vcf.gz # create csi index bgzip < missing_genotypes.vcf > missing_genotypes.vcf.gz tabix -f -p vcf missing_genotypes.vcf.gz # create tbi index bcftools index -f missing_genotypes.vcf.gz # create csi index bcftools view -O b example_vcf40.vcf.gz -o example_vcf40.bcf bcftools index -f example_vcf40.bcf bcftools view -O b example_vcf42.vcf.gz -o example_vcf42.bcf bcftools index -f example_vcf42.bcf bcftools view -O b example_vcf42_only_header.vcf.gz -o example_vcf42_only_header.bcf bcftools index -f example_vcf42_only_header.bcf bcftools view -O b example_vcf42_withcontigs.vcf.gz -o example_vcf42_withcontigs.bcf bcftools index -f example_vcf42_withcontigs.bcf bcftools view -O b example_vcf43.vcf.gz -o example_vcf43.bcf bcftools index -f example_vcf43.bcf bcftools view -O b example_vcf43_with_utf8.vcf.gz -o example_vcf43_with_utf8.bcf bcftools index -f example_vcf43_with_utf8.bcf bcftools view -O b gnomad.vcf.gz -o gnomad.bcf bcftools index -f gnomad.bcf bcftools view -O b gnomad_fixed.vcf.gz -o gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools index -f gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools view -O b missing_genotypes.vcf.gz -o missing_genotypes.bcf bcftools index -f missing_genotypes.bcf touch all.stamp make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' dh_auto_test I: pybuild base:385: cd /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build; python3.14 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0 -- /usr/bin/python3.14 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pysam-0.23.3+ds configfile: setup.cfg plugins: typeguard-4.4.4 collecting ... collected 975 items / 1 skipped tests/AlignedSegment_test.py::TestAlignedSegment::testBlocks PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearQualStr PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testCompare PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testEmpty PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testFullReferencePositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testHashing PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testLargeRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testNoSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testPositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testSettingTagInEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testStrOfEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualArrayB PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualArrayI PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualList PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualString PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualString2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualTuple PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateSequenceEffects1 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateSequenceEffects2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateTlen PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_mapped_reads_are_updated PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_unmapped_reads_ignore_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_equivalence_matches_only_and_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_1character_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_bad_type_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_hard_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_lowercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_match_mismatch PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_via_cigarstring PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip_reference PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_soft_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_uppercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_with_malformed_MD_tag PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_header_accessible PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_query_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_read_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_query_length_is_limited PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_equal PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestCigar::testCigar PASSED tests/AlignedSegment_test.py::TestCigar::testCigarString PASSED tests/AlignedSegment_test.py::TestCigarStats::testStats PASSED tests/AlignedSegment_test.py::TestAlignedPairs::testReferenceBases PASSED tests/AlignedSegment_test.py::TestBaseModifications::testChebi PASSED tests/AlignedSegment_test.py::TestBaseModifications::testDouble PASSED tests/AlignedSegment_test.py::TestBaseModifications::testExplicit PASSED tests/AlignedSegment_test.py::TestBaseModifications::testMulti PASSED tests/AlignedSegment_test.py::TestBaseModifications::testOrient PASSED tests/AlignedSegment_test.py::TestTags::testAddTags PASSED tests/AlignedSegment_test.py::TestTags::testAddTagsType PASSED tests/AlignedSegment_test.py::TestTags::testArrayTags PASSED tests/AlignedSegment_test.py::TestTags::testEmptyTag PASSED tests/AlignedSegment_test.py::TestTags::testLongTags PASSED tests/AlignedSegment_test.py::TestTags::testMDTagComplex PASSED tests/AlignedSegment_test.py::TestTags::testMDTagDeletions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagInsertions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagMatchOnly PASSED tests/AlignedSegment_test.py::TestTags::testMDTagRefSkipping PASSED tests/AlignedSegment_test.py::TestTags::testMDTagSoftClipping PASSED tests/AlignedSegment_test.py::TestTags::testMissingTag PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegers PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegersWrittenToFile PASSED tests/AlignedSegment_test.py::TestTags::testSetTag PASSED tests/AlignedSegment_test.py::TestTags::testTagParsing PASSED tests/AlignedSegment_test.py::TestTags::testTagsUpdatingFloat PASSED tests/AlignedSegment_test.py::TestCopy::testCopy PASSED tests/AlignedSegment_test.py::TestCopy::testDeepCopy PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestEnums::test_cigar_enums_are_defined PASSED tests/AlignedSegment_test.py::TestEnums::test_sam_flags_are_defined PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_constructed_without_header PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_written_to_file PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_id_can_be_set PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_name_is_not_available PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_qualities_are_complemented PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_sequence_is_complemented PASSED tests/AlignedSegment_test.py::TestExportImport::test_dict_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_with_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_without_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_to_string_without_alignment_file PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_dict PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_header PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references_without_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_CRAM [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_xlxgomdf' PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_SAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_CRAM [W::sanitise_SQ_lines] Header @SQ length mismatch for ref chr1, 2147483647 vs 1575 [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_mni5gtcd' PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_SAM PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupQueryPosition::testPileup PASSED tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope SKIPPED tests/AlignmentFilePileup_test.py::TestPileupObjects::testPileupColumn PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testInverse PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateAll PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIteratePerContig PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateRanges PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateTruncate PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testAccessOnClosedIterator PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStart PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStr PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testTruncate PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_depths_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_mapping_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_with_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_without_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_from_pileups_are_equal PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testRaises PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testTags PASSED tests/AlignmentFile_test.py::TestIO::testBAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testBAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithCSIIndex PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithShortBAI PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithoutAlignedSegments PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2CRAM PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyBAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyWithHeaderBAM PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFile PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject PASSED tests/AlignmentFile_test.py::TestIO::testHead PASSED tests/AlignmentFile_test.py::TestIO::testOpenFromFilename PASSED tests/AlignmentFile_test.py::TestIO::testReadBamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadSamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadingFromFileWithoutIndex PASSED tests/AlignmentFile_test.py::TestIO::testSAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2CRAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAMWithoutHeader PASSED tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile PASSED tests/AlignmentFile_test.py::TestIO::test_accessing_attributes_in_closed_file_raises_errors PASSED tests/AlignmentFile_test.py::TestIO::test_fail_read_sam_without_header PASSED tests/AlignmentFile_test.py::TestIO::test_fail_when_reading_unformatted_files PASSED tests/AlignmentFile_test.py::TestIO::test_fetch_by_tid PASSED tests/AlignmentFile_test.py::TestIO::test_header_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_with_header_without_header_check PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_without_header_with_refs PASSED tests/AlignmentFile_test.py::TestIO::test_reference_name_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_write_bam_to_unknown_path_fails [E::hts_open_format] Failed to open file "missing_directory/new_file.bam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAutoDetect::testBAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testCRAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testSAM PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIterateRanges PASSED tests/AlignmentFile_test.py::TestFloatTagBug::testFloatTagBug PASSED tests/AlignmentFile_test.py::TestLargeFieldBug::testLargeFileBug PASSED tests/AlignmentFile_test.py::TestClipping::testClipping PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_bam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_sam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads_by_contig PASSED tests/AlignmentFile_test.py::TestContextManager::testManager PASSED tests/AlignmentFile_test.py::TestMultiThread::testSingleThreadEqualsMultithread PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBadContig PASSED tests/AlignmentFile_test.py::TestExceptions::testMeaninglessCrap PASSED tests/AlignmentFile_test.py::TestExceptions::testMissingFile [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testZeroToZero PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenBamAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsBam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenSamAsBam PASSED tests/AlignmentFile_test.py::TestRegionParsing::test_dash_in_chr PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::test_pass_if_reads_binary_equal PASSED tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_in_header PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_with_null_bytes_in_header PASSED tests/AlignmentFile_test.py::TestMismatchingHeader::testMismatchingHeader PASSED tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBam2 PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBamIterator [W::bam_hdr_read] EOF marker is absent. The input is probably truncated [E::bgzf_read_block] Failed to read BGZF block data at offset 105176 expected 17578 bytes; hread returned 17094 [E::bgzf_read] Read block operation failed with error 4 after 0 of 4 bytes PASSED tests/AlignmentFile_test.py::TestCorruptBAM::testCorruptBamIterator PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetch PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetchAll PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testView PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testBAM PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testSAM PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_counts_as_expected PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_nofilter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_quality_filter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_all PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_callback PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_with_coordinates_works PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_without_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_wrong_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_counting_the_same_region_works PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_all PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_first PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_total PASSED tests/AlignmentFile_test.py::TestLogging::testFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail2 PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testCount PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testIndexStats PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testMate PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct_per_chromosome PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testIndex PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testSort [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testView [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAlignmentFileIndex::testIndex PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexBAM [W::hts_idx_load3] The index file is older than the data file: /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/tests/pysam_data/ex1.bam.bai PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexCRAM PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testRemoteExplicitIndexBAM PASSED tests/AlignmentFile_test.py::TestVerbosity::testVerbosity PASSED tests/AlignmentFile_test.py::TestSanityCheckingBAM::test_empty_read_gives_value_error PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_bam PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_cram SKIPPED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_sam PASSED tests/StreamFiledescriptors_test.py::StreamTest::test_samtools_processing SKIPPED tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCF PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamples::testVCF PASSED tests/VariantFile_test.py::TestMissingSamples::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCF [W::bcf_hdr_check_sanity] PL should be declared as Number=G PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testDetectBCF PASSED tests/VariantFile_test.py::TestOpening::testDetectVCF [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestOpening::testDetectVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCF PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFFromPath PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithoutIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testMissingFile [E::hts_open_format] Failed to open file "missing_file.vcf" : No such file or directory PASSED tests/VariantFile_test.py::TestOpening::testMissingFileVCFGZ [E::hts_open_format] Failed to open file "missing_file.vcf.gz" : No such file or directory PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_prebuilt_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_tbi_index_will_produce_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_tbi_index PASSED tests/VariantFile_test.py::TestHeader::testIterator PASSED tests/VariantFile_test.py::TestHeader::testStr PASSED tests/VariantFile_test.py::TestParsing::testAlleles PASSED tests/VariantFile_test.py::TestParsing::testAllelesVariantTypes PASSED tests/VariantFile_test.py::TestParsing::testAlt PASSED tests/VariantFile_test.py::TestParsing::testChrom PASSED tests/VariantFile_test.py::TestParsing::testChromFromPath PASSED tests/VariantFile_test.py::TestParsing::testFilter PASSED tests/VariantFile_test.py::TestParsing::testFormat PASSED tests/VariantFile_test.py::TestParsing::testId PASSED tests/VariantFile_test.py::TestParsing::testInfo PASSED tests/VariantFile_test.py::TestParsing::testPos PASSED tests/VariantFile_test.py::TestParsing::testQual PASSED tests/VariantFile_test.py::TestParsing::testRef PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleleIndices PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleles PASSED tests/VariantFile_test.py::TestParsing::testSampleFormats PASSED tests/VariantFile_test.py::TestParsing::testStart PASSED tests/VariantFile_test.py::TestParsing::testStop PASSED tests/VariantFile_test.py::TestIndexFilename::testOpen PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestSettingRecordValues::testBase PASSED tests/VariantFile_test.py::TestSettingRecordValues::testGenotype [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) (0, 0) PASSED tests/VariantFile_test.py::TestSettingRecordValues::testSetQual [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestMultiThreading::testNoMultiThreadingWithIgnoreTruncation PASSED tests/VariantFile_test.py::TestMultiThreading::testSingleThreadEqualsMultithreadResult [E::idx_find_and_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/tests/tmp/pysamtests_tmp_testSingleThreadEqualsMultithreadResult_lj65b16u.bcf' PASSED tests/VariantFile_test.py::TestSubsetting::testSubsetting PASSED tests/VariantFile_test.py::TestVCFVersions::test_all_records_can_be_fetched [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestUnicode::test_record_with_unicode PASSED tests/VariantRecord_test.py::test_ascii_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_ascii_annotation_with_variable_length_can_be_added PASSED tests/VariantRecord_test.py::test_unicode_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_set_sample_alleles PASSED tests/VariantRecord_test.py::test_repeated_new_record PASSED tests/compile_test.py::test_bam PASSED tests/compile_test.py::test_gtf PASSED tests/compile_test.py::TestBinaryCompatibility::test_alignments PASSED tests/compile_test.py::TestBinaryCompatibility::test_variants PASSED tests/faidx_test.py::TestFastaFile::testFetch PASSED tests/faidx_test.py::TestFastaFile::testFetchErrors PASSED tests/faidx_test.py::TestFastaFile::testLength PASSED tests/faidx_test.py::TestFastaFile::testOutOfRangeAccess PASSED tests/faidx_test.py::TestFastaFile::testSequenceLengths PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_and_contig_raises_exception PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_is_equivalent PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastxFileFastq::testCounts PASSED tests/faidx_test.py::TestFastxFileFastq::testManager PASSED tests/faidx_test.py::TestFastxFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastq::testSequence PASSED tests/faidx_test.py::TestFastqFileFastq::testCounts PASSED tests/faidx_test.py::TestFastqFileFastq::testManager PASSED tests/faidx_test.py::TestFastqFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastqFileFastq::testSequence PASSED tests/faidx_test.py::TestFastxFileFasta::testCounts PASSED tests/faidx_test.py::TestFastxFileFasta::testManager PASSED tests/faidx_test.py::TestFastxFileFasta::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFasta::testSequence PASSED tests/faidx_test.py::TestFastxFileFastqStream::testCounts PASSED tests/faidx_test.py::TestFastxFileFastqStream::testManager PASSED tests/faidx_test.py::TestFastxFileFastqStream::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastqStream::testSequence PASSED tests/faidx_test.py::TestFastxFileWithEmptySequence::testIteration PASSED tests/faidx_test.py::TestRemoteFileFTP::testFTPView PASSED tests/faidx_test.py::TestRemoteFileFTP::test_sequence_lengths_are_available PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_can_be_created_from_scratch PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_name_is_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_quality_is_wrong_length PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_name_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_quality_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_sequence_can_be_modified PASSED tests/faidx_test.py::TestFastqProxy::test_fastq_proxy_instantiation_raises_error PASSED tests/linking_test.py::TestLinking::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_tests_pass SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_fail_on_import SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_pass_if_ld_library_path_set SKIPPED tests/samtools_test.py::SamtoolsTest::testStatements PASSED tests/samtools_test.py::SamtoolsTest::testUsage SKIPPED (skipping us...) tests/samtools_test.py::EmptyIndexTest::testEmptyIndex PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraArg PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraFlag PASSED tests/samtools_test.py::ExerciseSubcommands::testFailingBCFtools [E::hts_open_format] Failed to open file "nonexistent.vcf" : No such file or directory PASSED tests/samtools_test.py::ExerciseSubcommands::testFailingSamtools [E::hts_open_format] Failed to open file "nonexistent.bam" : No such file or directory PASSED tests/samtools_test.py::TestReturnType::testReturnValueData PASSED tests/samtools_test.py::TestReturnType::testReturnValueString PASSED tests/samtools_test.py::StdoutTest::testDoubleCalling PASSED tests/samtools_test.py::StdoutTest::testSaveStdout PASSED tests/samtools_test.py::StdoutTest::testWithRedirectedStdout PASSED tests/samtools_test.py::StdoutTest::testWithoutRedirectedStdout PASSED tests/samtools_test.py::PysamTest::testStatements PASSED tests/samtools_test.py::PysamTest::testUsage SKIPPED (skipping usage...) tests/tabix_test.py::TestIndexing::test_indexing_to_custom_location_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_explict_columns_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_lineskipping_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_preset_works PASSED tests/tabix_test.py::TestCompression::testCompression PASSED tests/tabix_test.py::TestCompression::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompression::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionSam::testCompression PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionBed::testCompression PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionVCF::testCompression PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestGZFile::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithoutComments::testHeader PASSED tests/tabix_test.py::TestIterationWithoutComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithoutComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithoutComments::testReopening PASSED tests/tabix_test.py::TestIterationWithComments::testAll PASSED tests/tabix_test.py::TestIterationWithComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithComments::testHeader PASSED tests/tabix_test.py::TestIterationWithComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithComments::testReopening PASSED tests/tabix_test.py::TestIterators::testClosedFile PASSED tests/tabix_test.py::TestIterators::testClosedFileIteration PASSED tests/tabix_test.py::TestIterators::testIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testIteration PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooFewFields PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooManyFields PASSED tests/tabix_test.py::TestBed::testRead PASSED tests/tabix_test.py::TestBed::testWrite PASSED tests/tabix_test.py::TestUnicode::testFromTabix PASSED tests/tabix_test.py::TestUnicode::testFromVCF PASSED tests/tabix_test.py::TestVCFFromTabix::testRead PASSED tests/tabix_test.py::TestVCFFromTabix::testWrite PASSED tests/tabix_test.py::TestVCFFromVCF::testConnecting PASSED tests/tabix_test.py::TestVCFFromVCF::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_9::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_9::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_9::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_9::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_11::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_11::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_11::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_11::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_5::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_5::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_5::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_5::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_10::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_10::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_10::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_10::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_13::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_13::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_13::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_13::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_15::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_15::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_15::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_15::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_3::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_3::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_3::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_3::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_4::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_4::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_4::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_4::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_24::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_24::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_24::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_24::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_21::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_21::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_21::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_21::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_23::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_23::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_23::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_23::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_18::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_18::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_18::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_18::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_22::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_22::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_22::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_22::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_2::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_2::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_2::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_2::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_16::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_16::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_16::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_16::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_20::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_20::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_20::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_20::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_7::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_7::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_7::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_7::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_6::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_6::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_6::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_6::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_8::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_8::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_8::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_8::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_12::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_12::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_12::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_12::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile::testParsing [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testConnecting [W::bcf_hdr_check_sanity] GL should be declared as Number=G PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testConnecting [E::bcf_hdr_parse] Could not parse the header, sample line not found PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testConnecting [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testParsing [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'MMLQ' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17_gl000205_random' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr18' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr19' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr21' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr22' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000214' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000220' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000225' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrX' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:439104 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testParsing [W::vcf_parse] Contig '1' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testConnecting [E::bcf_hdr_parse_sample_line] Could not parse the "#CHROM.." line, either the fields are incorrect or spaces are present instead of tabs: #CHROM POS ID REF ALT QUAL FILTER INFO PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testParsing [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'refseq.name' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'refseq.positionType' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'CallSetAC' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CallSetAC2' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestIndexArgument::testFetchAll PASSED tests/tabix_test.py::TestIndexArgument::testLoadIndexWithoutTbiExtension PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v26 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testEmpty PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v26 PASSED tests/tabix_test.py::TestMultipleIterators::testDisjointIterators PASSED tests/tabix_test.py::TestMultipleIterators::testDoubleFetch PASSED tests/tabix_test.py::TestMultipleIterators::testJoinedIterators PASSED tests/tabix_test.py::TestMultipleIterators::testScope PASSED tests/tabix_test.py::TestContextManager::testManager PASSED tests/tabix_test.py::TestMultithreadTabixFile::testMultithreadEqualsSinglethread PASSED tests/tabixproxies_test.py::TestBED::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testCopy PASSED tests/tabixproxies_test.py::TestParser::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestParser::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestParser::testRead PASSED tests/tabixproxies_test.py::TestParser::testUnset PASSED tests/tabixproxies_test.py::TestParser::testWrite PASSED tests/tabixproxies_test.py::TestGTF::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGTF::testCopy PASSED tests/tabixproxies_test.py::TestGTF::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGTF::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGTF::testRead PASSED tests/tabixproxies_test.py::TestGTF::testUnset PASSED tests/tabixproxies_test.py::TestGTF::testWrite PASSED tests/tabixproxies_test.py::TestGTF::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGTF::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGTF::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_fields PASSED tests/tabixproxies_test.py::TestGTF::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_strand_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGFF3::testCopy PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGFF3::testRead PASSED tests/tabixproxies_test.py::TestGFF3::testUnset PASSED tests/tabixproxies_test.py::TestGFF3::testWrite PASSED tests/tabixproxies_test.py::TestGFF3::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGFF3::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_fields PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_strand_to_none_produces_dot PASSED tests/test_samtools_python.py::test_idxstats_parse_split_lines PASSED tests/test_samtools_python.py::test_bedcov_split_lines PASSED tests/test_samtools_python.py::test_idxstats_parse PASSED tests/test_samtools_python.py::test_bedcov PASSED =============================== warnings summary =============================== .pybuild/cpython3_3.14_pysam/build/tests/samtools_test.py::SamtoolsTest::testStatements .pybuild/cpython3_3.14_pysam/build/tests/samtools_test.py::PysamTest::testStatements /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/tests/samtools_test.py:138: UserWarning: versions of pysam.samtools and samtools differ: 1.21 != 1.22.1 warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 964 passed, 12 skipped, 2 warnings in 25.99s ================= make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:385: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools running build_ext checking for powerpc64le-linux-gnu-gcc option to enable C99 features... powerpc64le-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c pysam/conftest_cstd.c -o build/temp.linux-ppc64le-cpython-314/pysam/conftest_cstd.o powerpc64le-linux-gnu-gcc option to enable C99 features: none needed creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension running install_lib creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/version.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/conftest_cstd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/version.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/utils.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/bcftools.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/config.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/version.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/__init__.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/Pileup.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/samtools.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.cpython-314-powerpc64le-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__init__.py to __init__.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/Pileup.py to Pileup.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/version.py to version.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/__init__.py to __init__.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/samtools.py to samtools.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/bcftools.py to bcftools.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/utils.py to utils.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/config.py to config.cpython-314.pyc running install_egg_info Copying pysam.egg-info to /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam-0.23.3.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' cd tests/pysam_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh_install -Xtest.gtf.gz find debian -name log.txt -delete find debian -name LICENSE -delete make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-pysam/usr/lib/python3/dist-packages/pysam/libcalignedsegment.cpython-314-powerpc64le-linux-gnu.so: DWARF compression not beneficial - old size 1364636 new size 1367611 dwz: debian/python3-pysam/usr/lib/python3/dist-packages/pysam/libcbcf.cpython-314-powerpc64le-linux-gnu.so: DWARF compression not beneficial - old size 2193194 new size 2232558 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld64.so.2.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-pysam' in '../python3-pysam_0.23.3+ds-2+b2_ppc64el.deb'. dpkg-deb: building package 'python3-pysam-dbgsym' in '../python3-pysam-dbgsym_0.23.3+ds-2+b2_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../python-pysam_0.23.3+ds-2+b2_ppc64el.buildinfo dpkg-genchanges --build=any -O../python-pysam_0.23.3+ds-2+b2_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-10-01T11:02:52Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 01 Oct 2026 11:02:53 +0000 | +------------------------------------------------------------------------------+ python-pysam_0.23.3+ds-2+b2_ppc64el.changes: -------------------------------------------- Format: 1.8 Date: Fri, 14 Nov 2025 13:10:47 +0000 Source: python-pysam (0.23.3+ds-2) Binary: python3-pysam python3-pysam-dbgsym Binary-Only: yes Architecture: ppc64el Version: 0.23.3+ds-2+b2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: ppc64el Build Daemon (ppc64el-osuosl-02) Description: python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Changes: python-pysam (0.23.3+ds-2+b2) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload 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python3-pysam_0.23.3+ds-2+b2_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo Thu, 01 Oct 2026 11:02:53 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-pysam (0.23.3+ds-2) Binary: python3-pysam python3-pysam-dbgsym Architecture: ppc64el Version: 0.23.3+ds-2+b2 Binary-Only-Changes: python-pysam (0.23.3+ds-2+b2) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for ppc64el; no source changes. * Rebuild without Python 3.13 . -- ppc64el Build Daemon (ppc64el-osuosl-02) Fri, 14 Nov 2025 13:10:47 +0000 Checksums-Md5: bf80c81c4e946409f930246482f204a7 10486748 python3-pysam-dbgsym_0.23.3+ds-2+b2_ppc64el.deb b9e19b3a5c8a4ec82472e3166749d583 3690156 python3-pysam_0.23.3+ds-2+b2_ppc64el.deb Checksums-Sha1: f0b1b84a84d1a9341d2096440dbc4e1cd574e178 10486748 python3-pysam-dbgsym_0.23.3+ds-2+b2_ppc64el.deb 0d8db9341e98a10fd5ebe89e41cf506aa4450f7c 3690156 python3-pysam_0.23.3+ds-2+b2_ppc64el.deb Checksums-Sha256: 41e0efe45a64c38fe1686b3cb10f355af73a003ceb642c0e1b319c9b89830c4c 10486748 python3-pysam-dbgsym_0.23.3+ds-2+b2_ppc64el.deb 29323132a17a79af8d17055784b20e49bc4691c63089504d42c5bce830852699 3690156 python3-pysam_0.23.3+ds-2+b2_ppc64el.deb Build-Origin: Debian Build-Architecture: ppc64el Build-Date: Thu, 01 Oct 2026 11:02:52 +0000 Build-Path: /build/reproducible-path/python-pysam-0.23.3+ds Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 1.0-3), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-3+b1), bcftools (= 1.22-1), binutils (= 2.47-2), binutils-common (= 2.47-2), binutils-powerpc64le-linux-gnu (= 2.47-2), bsdextrautils (= 2.42.3-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), comerr-dev (= 2.1-1.47.4-1+b1), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-2), cpp-16-powerpc64le-linux-gnu (= 16.2.0-2), cpp-powerpc64le-linux-gnu (= 4:16.1.0-3), cython3 (= 3.1.6+dfsg-3), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.3), debianutils (= 5.24), dh-autoreconf (= 22), dh-python (= 7.20260623), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-2), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-2), g++-16-powerpc64le-linux-gnu (= 16.2.0-2), g++-powerpc64le-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-2), gcc-16-base (= 16.2.0-2), gcc-16-powerpc64le-linux-gnu (= 16.2.0-2), gcc-powerpc64le-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-3), gettext-base (= 1.0-3), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu1), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.22.1-3), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-2), libatomic1 (= 16.2.0-2), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.47-2), libblkid1 (= 2.42.3-1), libbrotli-dev (= 1.2.0-4+b1), libbrotli1 (= 1.2.0-4+b1), libbz2-1.0 (= 1.0.8-6+b2), libbz2-dev (= 1.0.8-6+b2), libc-bin (= 2.43-4), libc-dev-bin (= 2.43-4), libc-gconv-modules-extra (= 2.43-4), libc6 (= 2.43-4), libc6-dev (= 2.43-4), libcap-ng0 (= 0.9.5-1), libcc1-0 (= 16.2.0-2), libcom-err2 (= 1.47.4-1+b1), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-2), libctf0 (= 2.47-2), libcurl3t64-gnutls (= 8.22.0-1), libcurl4-gnutls (= 8.22.0-1), libcurl4-gnutls-dev (= 8.22.0-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.3), libdeflate-dev (= 1.25-1), libdeflate0 (= 1.25-1), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.196-1), libevent-2.1-7t64 (= 2.1.13-stable-1), libexpat1 (= 2.8.4-1), libexpat1-dev (= 2.8.4-1), libffi8 (= 3.8.0-2), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-2), libgcc-s1 (= 16.2.0-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-2), libgssapi-krb5-2 (= 1.22.1-3), libgssrpc4t64 (= 1.22.1-3), libhogweed6t64 (= 3.10.2-1+b1), libhts-dev (= 1.22.1+ds2-1+b2), libhts3t64 (= 1.22.1+ds2-1+b2), libhtscodecs2 (= 1.6.6-1), libidn2-0 (= 2.3.8-5), libidn2-dev (= 2.3.8-5), libisl23 (= 0.28-1), libitm1 (= 16.2.0-2), libjansson4 (= 2.15.1-1), libjs-sphinxdoc (= 9.1.0-7), libk5crypto3 (= 1.22.1-3), libkadm5clnt-mit12 (= 1.22.1-3), libkadm5srv-mit12 (= 1.22.1-3), libkdb5-10t64 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5-dev (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), libldap-dev (= 2.6.14+dfsg-2), libldap2 (= 2.6.14+dfsg-2), liblsan0 (= 16.2.0-2), liblzma-dev (= 5.8.3-1), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.3-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncurses6 (= 6.6+20260608-2), libncursesw6 (= 6.6+20260608-2), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp2-dev (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libnghttp3-dev (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls-dev (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libngtcp2-dev (= 1.24.0-1), libp11-kit-dev (= 0.26.5-1), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-2), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpkgconf7 (= 2.5.1-4), libpsl-dev (= 0.23.3-1), libpsl5t64 (= 0.23.3-1), libpython3-all-dev (= 3.14.7-3), libpython3-dev (= 3.14.7-3), libpython3-stdlib (= 3.14.7-3), libpython3.14 (= 3.14.7-1), libpython3.14-dev (= 3.14.7-1), libpython3.14-minimal (= 3.14.7-1), libpython3.14-stdlib (= 3.14.7-1), libquadmath0 (= 16.2.0-2), libreadline8t64 (= 8.3-4), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libseccomp2 (= 2.6.1-1), libselinux1 (= 3.11-2), libsframe3 (= 2.47-2), libsmartcols1 (= 2.42.3-1), libsqlite3-0 (= 3.53.4-2), libssh2-1-dev (= 1.11.1-6), libssh2-1t64 (= 1.11.1-6), libssl-dev (= 3.6.4-1), libssl3t64 (= 3.6.4-1), libstdc++-16-dev (= 16.2.0-2), libstdc++6 (= 16.2.0-2), libsystemd0 (= 262~rc1-2), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-2), libtsan2 (= 16.2.0-2), libubsan1 (= 16.2.0-2), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262~rc1-2), libunbound8 (= 1.26.0-2), libunistring-dev (= 1.4.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.3-1), libxml2-16 (= 2.15.3+dfsg-1+b1), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.1.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), netbase (= 6.6), nettle-dev (= 3.10.2-1+b1), openssl-provider-legacy (= 3.6.4-1), patch (= 2.8-2), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), python3 (= 3.14.7-3), python3-all (= 3.14.7-3), python3-all-dev (= 3.14.7-3), python3-autocommand (= 2.2.2-4), python3-dev (= 3.14.7-3), python3-inflect (= 7.5.0-2), python3-iniconfig (= 2.1.0-2), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.14.7-3), python3-more-itertools (= 11.1.0-2), python3-packaging (= 26.2-2), python3-pkg-resources (= 80.9.0-2), python3-pluggy (= 1.6.0-2), python3-pygments (= 2.20.0+dfsg-2), python3-pytest (= 9.1.1-1), python3-setuptools (= 80.9.0-2), python3-typeguard (= 4.4.4-3), python3-typing-extensions (= 4.16.0-5), python3-zipp (= 3.23.0-1), python3.14 (= 3.14.7-1), python3.14-dev (= 3.14.7-1), python3.14-minimal (= 3.14.7-1), readline-common (= 8.3-4), samtools (= 1.22.1-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tabix (= 1.22.1+ds2-1+b2), tar (= 1.35+dfsg-5), tzdata (= 2026c-1), util-linux (= 2.42.3-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1763125847" +------------------------------------------------------------------------------+ | Package contents Thu, 01 Oct 2026 11:02:53 +0000 | +------------------------------------------------------------------------------+ python3-pysam-dbgsym_0.23.3+ds-2+b2_ppc64el.deb ----------------------------------------------- new Debian package, version 2.0. size 10486748 bytes: control archive=1212 bytes. 917 bytes, 12 lines control 1473 bytes, 14 lines md5sums Package: python3-pysam-dbgsym Source: python-pysam (0.23.3+ds-2) Version: 0.23.3+ds-2+b2 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 11117 Depends: python3-pysam (= 0.23.3+ds-2+b2) Section: debug Priority: optional Description: debug symbols for python3-pysam Build-Ids: 30dfb61460854984fb7fa85cfd20ff91ed049d15 3774794deb2b27d466c76e07729581df717381fb 4a559bd685772d5a09925071e5dfa3e3091c374d 4e8ffbc62d14d2691e501c0df3f7287f01460818 618fc6aab3d0e7b91a9e840d6f3eaf88811436ad 68a105cdfd3a9c649892c4b9f06a851e1ca571ce 7dffa220d17353bb997d650fd856a8b2af9cdaa6 9b96868cfd1676d1cdb2c22ddf263349617129c9 9efc3467b792ae03e442ede6b153e5ab6d2e150a c127e3090ec870b28b28544fada5a86244117572 cba6d3b4c05bb399131c211935b2e5397cc88a0e e9441fb7173bf798683f935c035ee7b4b736ebe1 eb660c96b47068c17e3aa1a5f820077f47fe4c53 drwxr-xr-x root/root 0 2025-11-14 13:10 ./ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/30/ -rw-r--r-- root/root 1015920 2025-11-14 13:10 ./usr/lib/debug/.build-id/30/dfb61460854984fb7fa85cfd20ff91ed049d15.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/37/ -rw-r--r-- root/root 1213728 2025-11-14 13:10 ./usr/lib/debug/.build-id/37/74794deb2b27d466c76e07729581df717381fb.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/4a/ -rw-r--r-- root/root 1461592 2025-11-14 13:10 ./usr/lib/debug/.build-id/4a/559bd685772d5a09925071e5dfa3e3091c374d.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/4e/ -rw-r--r-- root/root 1038752 2025-11-14 13:10 ./usr/lib/debug/.build-id/4e/8ffbc62d14d2691e501c0df3f7287f01460818.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/61/ -rw-r--r-- root/root 1540440 2025-11-14 13:10 ./usr/lib/debug/.build-id/61/8fc6aab3d0e7b91a9e840d6f3eaf88811436ad.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/68/ -rw-r--r-- root/root 99960 2025-11-14 13:10 ./usr/lib/debug/.build-id/68/a105cdfd3a9c649892c4b9f06a851e1ca571ce.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/7d/ -rw-r--r-- root/root 568456 2025-11-14 13:10 ./usr/lib/debug/.build-id/7d/ffa220d17353bb997d650fd856a8b2af9cdaa6.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/9b/ -rw-r--r-- root/root 637888 2025-11-14 13:10 ./usr/lib/debug/.build-id/9b/96868cfd1676d1cdb2c22ddf263349617129c9.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/9e/ -rw-r--r-- root/root 2291136 2025-11-14 13:10 ./usr/lib/debug/.build-id/9e/fc3467b792ae03e442ede6b153e5ab6d2e150a.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/c1/ -rw-r--r-- root/root 460520 2025-11-14 13:10 ./usr/lib/debug/.build-id/c1/27e3090ec870b28b28544fada5a86244117572.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/cb/ -rw-r--r-- root/root 292608 2025-11-14 13:10 ./usr/lib/debug/.build-id/cb/a6d3b4c05bb399131c211935b2e5397cc88a0e.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/e9/ -rw-r--r-- root/root 508392 2025-11-14 13:10 ./usr/lib/debug/.build-id/e9/441fb7173bf798683f935c035ee7b4b736ebe1.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/eb/ -rw-r--r-- root/root 177000 2025-11-14 13:10 ./usr/lib/debug/.build-id/eb/660c96b47068c17e3aa1a5f820077f47fe4c53.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/ -rw-r--r-- root/root 45672 2025-11-14 13:10 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/python3-pysam.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-11-14 13:10 ./usr/share/doc/python3-pysam-dbgsym -> python3-pysam python3-pysam_0.23.3+ds-2+b2_ppc64el.deb ---------------------------------------- new Debian package, version 2.0. size 3690156 bytes: control archive=9340 bytes. 718 bytes, 16 lines control 35522 bytes, 362 lines md5sums 285 bytes, 12 lines * postinst #!/bin/sh 423 bytes, 12 lines * prerm #!/bin/sh Package: python3-pysam Source: python-pysam (0.23.3+ds-2) Version: 0.23.3+ds-2+b2 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 37857 Depends: libc6 (>= 2.38), libhts3t64 (>= 1.22.1), zlib1g (>= 1:1.1.4), python3 (<< 3.15), python3 (>= 3.14~), python3:any Section: python Priority: optional Homepage: https://pysam.readthedocs.org/en/latest Description: interface for the SAM/BAM sequence alignment and mapping format (Python 3) Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. . 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+0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 01 Oct 2026 11:02:55 +0000 | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 242572 Build-Time: 269 Distribution: unstable Host Architecture: ppc64el Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderdZXJjmO/inputs/python-pysam_0.23.3+ds-2.dsc Machine Architecture: ppc64el Package: python-pysam Package-Time: 280 Source-Version: 0.23.3+ds-2 Space: 242572 Status: successful Version: 0.23.3+ds-2+b2 -------------------------------------------------------------------------------- Finished at 2026-10-01T11:02:52Z Build needed 00:04:40, 242572k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdZXJjmO/out size differs for python3-pysam-dbgsym_0.23.3+ds-2+b2_ppc64el.deb checking python3-pysam-dbgsym_0.23.3+ds-2+b2_ppc64el.deb: