=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdjjP6XG/inputs/mapsembler2_2.2.4+dfsg1-4_ppc64el.buildinfo Source: mapsembler2 Version: 2.2.4+dfsg1-4 rebuilderd-worker node: osuosl7-ppc64el +------------------------------------------------------------------------------+ | Downloading sources Sun, 14 Sep 2025 15:50:54 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian sid InRelease [216 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.1 MB] Fetched 22.0 MB in 3s (8,237 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1-4.dsc' mapsembler2_2.2.4+dfsg1-4.dsc 2265 SHA256:9c00683679e9b6fe8db1bac016ac724625b993b7fd1b5e130d00b06be82f4de5 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1.orig.tar.xz' mapsembler2_2.2.4+dfsg1.orig.tar.xz 1369588 SHA256:44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 'https://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1-4.debian.tar.xz' mapsembler2_2.2.4+dfsg1-4.debian.tar.xz 24464 SHA256:e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 mapsembler2_2.2.4+dfsg1.orig.tar.xz e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz 9c00683679e9b6fe8db1bac016ac724625b993b7fd1b5e130d00b06be82f4de5 mapsembler2_2.2.4+dfsg1-4.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sun, 14 Sep 2025 15:50:58 +0000 | +------------------------------------------------------------------------------+ Rebuilding mapsembler2=2.2.4+dfsg1-4 in /srv/rebuilderd/tmp/rebuilderdjjP6XG/inputs now. +------------------------------------------------------------------------------+ | WARNING: calling debrebuild without --cache, hammering snapshot.d.o :( | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdjjP6XG/out --builder=sbuild+unshare -- /srv/rebuilderd/tmp/rebuilderdjjP6XG/inputs/mapsembler2_2.2.4+dfsg1-4_ppc64el.buildinfo /srv/rebuilderd/tmp/rebuilderdjjP6XG/inputs/mapsembler2_2.2.4+dfsg1-4_ppc64el.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1 I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid InRelease [165 kB] Get:2 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el Packages [8540 kB] Fetched 8705 kB in 5s (1589 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20210818T205324Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el login ppc64el 1:4.8.1-1 [657 kB] Fetched 657 kB in 1s (970 kB/s) dpkg-name: info: moved 'login_1%3a4.8.1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp9quw4tw4/login_4.8.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libaec0 ppc64el 1.0.5-2 [22.4 kB] Fetched 22.4 kB in 1s (31.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmocvt3r0/libaec0_1.0.5-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libboost-dev ppc64el 1.74.0.3 [4548 B] Fetched 4548 B in 1s (4444 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbrjl4jm1/libboost-dev_1.74.0.3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libuchardet0 ppc64el 0.0.7-1 [70.3 kB] Fetched 70.3 kB in 1s (104 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp174y4c5c/libuchardet0_0.0.7-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libblkid1 ppc64el 2.36.1-8 [211 kB] Fetched 211 kB in 2s (120 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvmybmh5c/libblkid1_2.36.1-8_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el init-system-helpers all 1.60 [47.1 kB] Fetched 47.1 kB in 1s (36.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu4drksq1/init-system-helpers_1.60_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libpam0g ppc64el 1.4.0-9 [134 kB] Fetched 134 kB in 2s (84.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpss3au4cj/libpam0g_1.4.0-9_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libseccomp2 ppc64el 2.5.1-1 [54.2 kB] Fetched 54.2 kB in 1s (39.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpovhfgk6n/libseccomp2_2.5.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libmagic-mgc ppc64el 1:5.39-3 [273 kB] Fetched 273 kB in 2s (161 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.39-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmplic4e577/libmagic-mgc_5.39-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libidn2-0 ppc64el 2.3.2-2 [97.9 kB] Fetched 97.9 kB in 1s (65.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpku6rr2x6/libidn2-0_2.3.2-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-2 [94.7 kB] Fetched 94.7 kB in 1s (181 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.2.11.dfsg-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpfdrfru9_/zlib1g_1.2.11.dfsg-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el sensible-utils all 0.0.14 [14.8 kB] Fetched 14.8 kB in 1s (14.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx__7dupl/sensible-utils_0.0.14_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libkrb5support0 ppc64el 1.18.3-6 [68.6 kB] Fetched 68.6 kB in 0s (169 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4ueo45s/libkrb5support0_1.18.3-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el ncurses-base all 6.2+20201114-2 [271 kB] Fetched 271 kB in 1s (195 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3f520io/ncurses-base_6.2+20201114-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libsub-override-perl all 0.09-2 [10.2 kB] Fetched 10.2 kB in 0s (52.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv283umox/libsub-override-perl_0.09-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libcc1-0 ppc64el 11.2.0-2 [41.3 kB] Fetched 41.3 kB in 1s (43.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbcscljt1/libcc1-0_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libc6-dev ppc64el 2.31-16 [2296 kB] Fetched 2296 kB in 2s (1220 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp136_1yfb/libc6-dev_2.31-16_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgpg-error0 ppc64el 1.38-2 [84.4 kB] Fetched 84.4 kB in 1s (74.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpodjazmlb/libgpg-error0_1.38-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libsz2 ppc64el 1.0.5-2 [7720 B] Fetched 7720 B in 1s (7704 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu3vebmta/libsz2_1.0.5-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el readline-common all 8.1-2 [73.8 kB] Fetched 73.8 kB in 1s (67.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkayhf68e/readline-common_8.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el coreutils ppc64el 8.32-4 [2875 kB] Fetched 2875 kB in 2s (1844 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgu83k4mx/coreutils_8.32-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libssh2-1 ppc64el 1.9.0-3 [178 kB] Fetched 178 kB in 1s (191 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ohnosaj/libssh2-1_1.9.0-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libnsl-dev ppc64el 1.3.0-2 [73.6 kB] Fetched 73.6 kB in 1s (143 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5121q7of/libnsl-dev_1.3.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el mawk ppc64el 1.3.4.20200120-2 [116 kB] Fetched 116 kB in 0s (534 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiathwy39/mawk_1.3.4.20200120-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libc6 ppc64el 2.31-16 [2834 kB] Fetched 2834 kB in 2s (1463 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0u3lrd20/libc6_2.31-16_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el perl ppc64el 5.32.1-5 [293 kB] Fetched 293 kB in 1s (207 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyzlmau3j/perl_5.32.1-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libsystemd0 ppc64el 247.9-1 [397 kB] Fetched 397 kB in 1s (689 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm8ili4gf/libsystemd0_247.9-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2 [195 kB] Fetched 195 kB in 0s (967 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.2.11.dfsg-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp1bdsw1dj/zlib1g-dev_1.2.11.dfsg-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el lsb-base all 11.1.0 [28.7 kB] Fetched 28.7 kB in 0s (148 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5g17apd9/lsb-base_11.1.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libperl5.32 ppc64el 5.32.1-5 [4079 kB] Fetched 4079 kB in 2s (2481 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps39b0jp9/libperl5.32_5.32.1-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libtasn1-6 ppc64el 4.16.0-2 [59.5 kB] Fetched 59.5 kB in 1s (84.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_idurtlr/libtasn1-6_4.16.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libarchive13 ppc64el 3.4.3-2+b1 [389 kB] Fetched 389 kB in 1s (262 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0t4uhnud/libarchive13_3.4.3-2+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libctf-nobfd0 ppc64el 2.37-4 [154 kB] Fetched 154 kB in 1s (125 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpksmya_xi/libctf-nobfd0_2.37-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el file ppc64el 1:5.39-3 [69.6 kB] Fetched 69.6 kB in 1s (64.0 kB/s) dpkg-name: info: moved 'file_1%3a5.39-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp8ry1544s/file_5.39-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libunistring2 ppc64el 0.9.10-6 [394 kB] Fetched 394 kB in 1s (359 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl1u9ps28/libunistring2_0.9.10-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libssl1.1 ppc64el 1.1.1k-1 [1538 kB] Fetched 1538 kB in 2s (697 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjwrc77k0/libssl1.1_1.1.1k-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libicu67 ppc64el 67.1-7 [8740 kB] Fetched 8740 kB in 2s (4647 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpve3tzskt/libicu67_67.1-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el gcc-10-base ppc64el 10.2.1-6 [201 kB] Fetched 201 kB in 1s (277 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkl_r0qnp/gcc-10-base_10.2.1-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libexpat1 ppc64el 2.2.10-2 [91.6 kB] Fetched 91.6 kB in 0s (462 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8232gxxh/libexpat1_2.2.10-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.37-4 [1773 kB] Fetched 1773 kB in 2s (985 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2yl_2bwi/binutils-powerpc64le-linux-gnu_2.37-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libcap-ng0 ppc64el 0.7.9-2.2+b1 [15.5 kB] Fetched 15.5 kB in 1s (18.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyi_8q960/libcap-ng0_0.7.9-2.2+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libbinutils ppc64el 2.37-4 [570 kB] Fetched 570 kB in 2s (292 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpma9l3t2k/libbinutils_2.37-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libcppunit-1.15-0 ppc64el 1.15.1-2 [148 kB] Fetched 148 kB in 1s (116 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5i9lqjly/libcppunit-1.15-0_1.15.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libpcre2-8-0 ppc64el 10.36-2 [234 kB] Fetched 234 kB in 1s (170 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv8q_xd5p/libpcre2-8-0_10.36-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libubsan1 ppc64el 11.2.0-2 [856 kB] Fetched 856 kB in 2s (425 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdc3otkuz/libubsan1_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (516 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnn713h60/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el liblsan0 ppc64el 11.2.0-2 [905 kB] Fetched 905 kB in 2s (455 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2uajtue/liblsan0_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libjpeg-dev ppc64el 1:2.0.6-4 [67.8 kB] Fetched 67.8 kB in 1s (63.8 kB/s) dpkg-name: info: moved 'libjpeg-dev_1%3a2.0.6-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp9mi985xo/libjpeg-dev_2.0.6-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libhdf5-cpp-103-1 ppc64el 1.10.6+repack-5 [138 kB] Fetched 138 kB in 1s (199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpix0eu4du/libhdf5-cpp-103-1_1.10.6+repack-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el debhelper all 13.4+nmu1 [1039 kB] Fetched 1039 kB in 2s (603 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxlmd3x57/debhelper_13.4+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libdebconfclient0 ppc64el 0.260 [50.7 kB] Fetched 50.7 kB in 1s (51.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_vl4y4mu/libdebconfclient0_0.260_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libncursesw6 ppc64el 6.2+20201114-2 [149 kB] Fetched 149 kB in 1s (287 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqd_4v2ks/libncursesw6_6.2+20201114-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libk5crypto3 ppc64el 1.18.3-6 [125 kB] Fetched 125 kB in 2s (82.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf3m1bu5z/libk5crypto3_1.18.3-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgnutls30 ppc64el 3.7.1-5 [1315 kB] Fetched 1315 kB in 2s (740 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps695x1_0/libgnutls30_3.7.1-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libmount1 ppc64el 2.36.1-8 [230 kB] Fetched 230 kB in 1s (221 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkj3g9sp3/libmount1_2.36.1-8_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libsigsegv2 ppc64el 2.13-1 [35.6 kB] Fetched 35.6 kB in 1s (28.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnyvlp3i0/libsigsegv2_2.13-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (1131 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps3vzc1x3/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libselinux1 ppc64el 3.1-3 [98.6 kB] Fetched 98.6 kB in 1s (85.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdj6522gq/libselinux1_3.1-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgfortran5 ppc64el 11.2.0-2 [429 kB] Fetched 429 kB in 1s (525 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfwu9hppj/libgfortran5_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libelf1 ppc64el 0.185-2 [180 kB] Fetched 180 kB in 1s (142 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6t45c4bn/libelf1_0.185-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libnsl2 ppc64el 1.3.0-2 [44.8 kB] Fetched 44.8 kB in 1s (88.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfx2jg1ep/libnsl2_1.3.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el bash ppc64el 5.1-3+b1 [1450 kB] Fetched 1450 kB in 2s (695 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqe2ob8as/bash_5.1-3+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libaudit-common all 1:3.0.5-1 [15.7 kB] Fetched 15.7 kB in 1s (22.2 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a3.0.5-1_all.deb' to '/srv/rebuilderd/tmp/tmp8n8j_uc3/libaudit-common_3.0.5-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el perl-base ppc64el 5.32.1-5 [1621 kB] Fetched 1621 kB in 2s (760 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ezvwz52/perl-base_5.32.1-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libnettle8 ppc64el 3.7.3-1 [297 kB] Fetched 297 kB in 2s (169 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwerxcdvt/libnettle8_3.7.3-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el xz-utils ppc64el 5.2.5-2 [223 kB] Fetched 223 kB in 0s (862 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_uc9ac_q/xz-utils_5.2.5-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgcc-s1 ppc64el 11.2.0-2 [30.7 kB] Fetched 30.7 kB in 0s (79.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcwvo9ybc/libgcc-s1_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el autotools-dev all 20180224.1+nmu1 [77.1 kB] Fetched 77.1 kB in 1s (74.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn32t9jbw/autotools-dev_20180224.1+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el liblz4-1 ppc64el 1.9.3-2 [70.2 kB] Fetched 70.2 kB in 0s (340 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf8nj_rj3/liblz4-1_1.9.3-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgmp10 ppc64el 2:6.2.1+dfsg-1 [577 kB] Fetched 577 kB in 1s (691 kB/s) dpkg-name: info: moved 'libgmp10_2%3a6.2.1+dfsg-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpj4obgv8w/libgmp10_6.2.1+dfsg-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el automake all 1:1.16.4-1 [819 kB] Fetched 819 kB in 2s (499 kB/s) dpkg-name: info: moved 'automake_1%3a1.16.4-1_all.deb' to '/srv/rebuilderd/tmp/tmpiydldsjk/automake_1.16.4-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libuuid1 ppc64el 2.36.1-8 [85.4 kB] Fetched 85.4 kB in 1s (71.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjgyvyfk9/libuuid1_2.36.1-8_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el bzip2 ppc64el 1.0.8-4 [50.0 kB] Fetched 50.0 kB in 1s (62.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuu27z8oi/bzip2_1.0.8-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libasan6 ppc64el 11.2.0-2 [2164 kB] Fetched 2164 kB in 2s (1182 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0for_em7/libasan6_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgssapi-krb5-2 ppc64el 1.18.3-6 [179 kB] Fetched 179 kB in 2s (112 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuewb3kzc/libgssapi-krb5-2_1.18.3-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libp11-kit0 ppc64el 0.23.22-1 [339 kB] Fetched 339 kB in 1s (231 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpylyrnt10/libp11-kit0_0.23.22-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libcrypt-dev ppc64el 1:4.4.25-1 [119 kB] Fetched 119 kB in 2s (77.2 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.25-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpcjf18fkz/libcrypt-dev_4.4.25-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libjpeg62-turbo ppc64el 1:2.0.6-4 [159 kB] Fetched 159 kB in 1s (158 kB/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.0.6-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmppxk8wwji/libjpeg62-turbo_2.0.6-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libpipeline1 ppc64el 1.5.3-1 [36.3 kB] Fetched 36.3 kB in 1s (29.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpduamrw8v/libpipeline1_1.5.3-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libaudit1 ppc64el 1:3.0.5-1 [54.6 kB] Fetched 54.6 kB in 1s (40.3 kB/s) dpkg-name: info: moved 'libaudit1_1%3a3.0.5-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp66p1v_p8/libaudit1_3.0.5-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el findutils ppc64el 4.8.0-1 [714 kB] Fetched 714 kB in 1s (562 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp6oamwob/findutils_4.8.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el gcc-10 ppc64el 10.2.1-6 [14.2 MB] Fetched 14.2 MB in 3s (4900 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqornqvy7/gcc-10_10.2.1-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libisl23 ppc64el 0.23-1 [735 kB] Fetched 735 kB in 2s (459 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmeb8moc3/libisl23_0.23-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libtool all 2.4.6-15 [513 kB] Fetched 513 kB in 2s (326 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplycn9d3h/libtool_2.4.6-15_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libpcre3 ppc64el 2:8.39-13 [336 kB] Fetched 336 kB in 1s (233 kB/s) dpkg-name: info: moved 'libpcre3_2%3a8.39-13_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpc4h7w93s/libpcre3_8.39-13_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libquadmath0 ppc64el 11.2.0-2 [150 kB] Fetched 150 kB in 0s (341 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn3j0uu2x/libquadmath0_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el man-db ppc64el 2.9.4-2 [1374 kB] Fetched 1374 kB in 2s (774 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpewwgjeyz/man-db_2.9.4-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el bc ppc64el 1.07.1-2+b2 [111 kB] Fetched 111 kB in 2s (73.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0lg_73x6/bc_1.07.1-2+b2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el dpkg-dev all 1.20.9 [2153 kB] Fetched 2153 kB in 1s (1567 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp98ubomnz/dpkg-dev_1.20.9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el gettext-base ppc64el 0.21-4 [177 kB] Fetched 177 kB in 1s (139 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu8jomz34/gettext-base_0.21-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgcc-10-dev ppc64el 10.2.1-6 [1245 kB] Fetched 1245 kB in 1s (1249 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt5jgysnf/libgcc-10-dev_10.2.1-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el gcc-11-base ppc64el 11.2.0-2 [204 kB] Fetched 204 kB in 1s (153 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoqugzxwb/gcc-11-base_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libzstd1 ppc64el 1.4.8+dfsg-2.1 [343 kB] Fetched 343 kB in 1s (672 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjwbfwn5q/libzstd1_1.4.8+dfsg-2.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el intltool-debian all 0.35.0+20060710.5 [26.8 kB] Fetched 26.8 kB in 0s (140 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm81ufm90/intltool-debian_0.35.0+20060710.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el cmake ppc64el 3.18.4-2 [6500 kB] Fetched 6500 kB in 2s (3085 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyq4ncc9d/cmake_3.18.4-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libboost1.74-dev ppc64el 1.74.0-9 [9534 kB] Fetched 9534 kB in 1s (6504 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5qmjmyz_/libboost1.74-dev_1.74.0-9_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el autopoint all 0.21-4 [510 kB] Fetched 510 kB in 1s (439 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmtj22q_n/autopoint_0.21-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libpam-modules ppc64el 1.4.0-9 [353 kB] Fetched 353 kB in 1s (242 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps386kml0/libpam-modules_1.4.0-9_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libstdc++-10-dev ppc64el 10.2.1-6 [1794 kB] Fetched 1794 kB in 2s (1004 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkv7vm4h0/libstdc++-10-dev_10.2.1-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libitm1 ppc64el 11.2.0-2 [28.7 kB] Fetched 28.7 kB in 1s (23.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpezcm_rtx/libitm1_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libreadline8 ppc64el 8.1-2 [179 kB] Fetched 179 kB in 1s (185 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprr_wm3oc/libreadline8_8.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libtirpc-dev ppc64el 1.3.2-2 [209 kB] Fetched 209 kB in 1s (407 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7sqy2e7x/libtirpc-dev_1.3.2-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el rpcsvc-proto ppc64el 1.4.2-3 [65.0 kB] Fetched 65.0 kB in 1s (91.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq0ncwrgm/rpcsvc-proto_1.4.2-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libcurl4 ppc64el 7.74.0-1.3+b1 [356 kB] Fetched 356 kB in 1s (375 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwpz07gnt/libcurl4_7.74.0-1.3+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libprocps8 ppc64el 2:3.3.17-5 [66.5 kB] Fetched 66.5 kB in 0s (174 kB/s) dpkg-name: info: moved 'libprocps8_2%3a3.3.17-5_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpegc_kdw2/libprocps8_3.3.17-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libnghttp2-14 ppc64el 1.43.0-1 [85.0 kB] Fetched 85.0 kB in 1s (109 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6fo97j1o/libnghttp2-14_1.43.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el gettext ppc64el 0.21-4 [1336 kB] Fetched 1336 kB in 2s (630 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcyv386_q/gettext_0.21-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-2.1 [115 kB] Fetched 115 kB in 1s (97.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfrw1bmlo/libsasl2-2_2.1.27+dfsg-2.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libatomic1 ppc64el 11.2.0-2 [9764 B] Fetched 9764 B in 1s (14.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl8v2xzb7/libatomic1_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgdbm-compat4 ppc64el 1.19-2 [45.2 kB] Fetched 45.2 kB in 1s (35.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnmrj4vla/libgdbm-compat4_1.19-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-2.1 [71.2 kB] Fetched 71.2 kB in 1s (68.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd72klsjm/libsasl2-modules-db_2.1.27+dfsg-2.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el patch ppc64el 2.7.6-7 [134 kB] Fetched 134 kB in 1s (264 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzclyr4f7/patch_2.7.6-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libdebhelper-perl all 13.4+nmu1 [191 kB] Fetched 191 kB in 2s (116 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv6dy6_ua/libdebhelper-perl_13.4+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libmpc3 ppc64el 1.2.0-1 [48.3 kB] Fetched 48.3 kB in 1s (51.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp436jj7wy/libmpc3_1.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el cpp-10 ppc64el 10.2.1-6 [7134 kB] Fetched 7134 kB in 2s (3333 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp21yatbf_/cpp-10_10.2.1-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el autoconf all 2.69-14 [313 kB] Fetched 313 kB in 0s (1394 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy1av368j/autoconf_2.69-14_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Fetched 26.3 kB in 1s (29.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7yswd7yu/libfile-stripnondeterminism-perl_1.12.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libctf0 ppc64el 2.37-4 [97.1 kB] Fetched 97.1 kB in 0s (222 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqsjseo58/libctf0_2.37-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el procps ppc64el 2:3.3.17-5 [512 kB] Fetched 512 kB in 2s (274 kB/s) dpkg-name: info: moved 'procps_2%3a3.3.17-5_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp01yln20n/procps_3.3.17-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el debianutils ppc64el 5.1-1 [92.6 kB] Fetched 92.6 kB in 1s (63.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp2u3fy32/debianutils_5.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libbrotli1 ppc64el 1.0.9-2+b2 [295 kB] Fetched 295 kB in 1s (575 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp32ld870/libbrotli1_1.0.9-2+b2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libtirpc3 ppc64el 1.3.2-2 [95.4 kB] Fetched 95.4 kB in 0s (463 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplfhrjd_h/libtirpc3_1.3.2-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el dwz ppc64el 0.14-1 [103 kB] Fetched 103 kB in 0s (503 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmpm8wdta/dwz_0.14-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el util-linux ppc64el 2.36.1-8 [1163 kB] Fetched 1163 kB in 2s (669 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxml_se_8/util-linux_2.36.1-8_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libhdf5-hl-fortran-100 ppc64el 1.10.6+repack-5 [58.6 kB] Fetched 58.6 kB in 0s (129 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9e5h0ezs/libhdf5-hl-fortran-100_1.10.6+repack-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el binutils ppc64el 2.37-4 [61.6 kB] Fetched 61.6 kB in 1s (69.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp52qr0h7u/binutils_2.37-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el dpkg ppc64el 1.20.9 [2490 kB] Fetched 2490 kB in 2s (1608 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2carxm42/dpkg_1.20.9_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libjpeg62-turbo-dev ppc64el 1:2.0.6-4 [286 kB] Fetched 286 kB in 2s (166 kB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a2.0.6-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpgw05uvhh/libjpeg62-turbo-dev_2.0.6-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libkeyutils1 ppc64el 1.6.1-2 [16.7 kB] Fetched 16.7 kB in 1s (19.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvgj5dgo7/libkeyutils1_1.6.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libc-dev-bin ppc64el 2.31-16 [239 kB] Fetched 239 kB in 1s (175 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo92jzzqp/libc-dev-bin_2.31-16_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el gzip ppc64el 1.10-4 [135 kB] Fetched 135 kB in 1s (220 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzpl19ykj/gzip_1.10-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.8 [722 kB] Fetched 722 kB in 2s (453 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpitspvu0t/libdb5.3_5.3.28+dfsg1-0.8_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el cpp ppc64el 4:10.2.1-1 [19.8 kB] Fetched 19.8 kB in 1s (26.6 kB/s) dpkg-name: info: moved 'cpp_4%3a10.2.1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp0gn3a9gk/cpp_10.2.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libacl1 ppc64el 2.2.53-10 [32.7 kB] Fetched 32.7 kB in 1s (23.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb8l26meg/libacl1_2.2.53-10_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libc-bin ppc64el 2.31-16 [839 kB] Fetched 839 kB in 2s (426 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl69veikj/libc-bin_2.31-16_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el debconf all 1.5.77 [144 kB] Fetched 144 kB in 2s (92.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkffplnxn/debconf_1.5.77_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libhdf5-fortran-102 ppc64el 1.10.6+repack-5 [112 kB] Fetched 112 kB in 1s (90.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3m9lu49m/libhdf5-fortran-102_1.10.6+repack-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el g++-10 ppc64el 10.2.1-6 [7913 kB] Fetched 7913 kB in 2s (4362 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0y2djeef/g++-10_10.2.1-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el m4 ppc64el 1.4.18-5 [209 kB] Fetched 209 kB in 1s (412 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz7cmb06i/m4_1.4.18-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el base-passwd ppc64el 3.5.51 [59.7 kB] Fetched 59.7 kB in 1s (55.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcar0nntr/base-passwd_3.5.51_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libdpkg-perl all 1.20.9 [1537 kB] Fetched 1537 kB in 0s (3659 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpukz_xhki/libdpkg-perl_1.20.9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libldap-2.4-2 ppc64el 2.4.57+dfsg-3 [248 kB] Fetched 248 kB in 1s (242 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj_vbtq9p/libldap-2.4-2_2.4.57+dfsg-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libuv1 ppc64el 1.40.0-2 [139 kB] Fetched 139 kB in 0s (311 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphj_1nz4l/libuv1_1.40.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libhdf5-hl-cpp-100 ppc64el 1.10.6+repack-5 [38.0 kB] Fetched 38.0 kB in 1s (59.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8kxw6gp5/libhdf5-hl-cpp-100_1.10.6+repack-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el hdf5-helpers ppc64el 1.10.6+repack-5 [40.4 kB] Fetched 40.4 kB in 1s (37.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp328ygyw6/hdf5-helpers_1.10.6+repack-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el g++ ppc64el 4:10.2.1-1 [1636 B] Fetched 1636 B in 0s (3766 B/s) dpkg-name: info: moved 'g++_4%3a10.2.1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpre_k0uvp/g++_10.2.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libcrypt1 ppc64el 1:4.4.25-1 [98.4 kB] Fetched 98.4 kB in 1s (66.6 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.25-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp5x5ve9n5/libcrypt1_4.4.25-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Fetched 15.4 kB in 1s (13.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqf7bz5tn/dh-strip-nondeterminism_1.12.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libstdc++6 ppc64el 11.2.0-2 [617 kB] Fetched 617 kB in 2s (382 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkyv1eg0f/libstdc++6_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libtinfo6 ppc64el 6.2+20201114-2 [349 kB] Fetched 349 kB in 2s (192 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7c3_opfq/libtinfo6_6.2+20201114-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libhdf5-dev ppc64el 1.10.6+repack-5 [2666 kB] Fetched 2666 kB in 0s (6049 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2zggcjav/libhdf5-dev_1.10.6+repack-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libhogweed6 ppc64el 3.7.3-1 [324 kB] Fetched 324 kB in 1s (278 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprddavz2k/libhogweed6_3.7.3-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libcom-err2 ppc64el 1.46.2-2 [74.8 kB] Fetched 74.8 kB in 1s (53.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf3rzbgau/libcom-err2_1.46.2-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libkrb5-3 ppc64el 1.18.3-6 [392 kB] Fetched 392 kB in 1s (330 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1eoaz8go/libkrb5-3_1.18.3-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el liblzma5 ppc64el 5.2.5-2 [178 kB] Fetched 178 kB in 0s (812 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpavb1fhvu/liblzma5_5.2.5-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libpam-modules-bin ppc64el 1.4.0-9 [111 kB] Fetched 111 kB in 1s (86.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcy76sb76/libpam-modules-bin_1.4.0-9_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el librhash0 ppc64el 1.4.1-2 [134 kB] Fetched 134 kB in 2s (86.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1pkit587/librhash0_1.4.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el perl-modules-5.32 all 5.32.1-5 [2823 kB] Fetched 2823 kB in 2s (1506 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1i6d196g/perl-modules-5.32_5.32.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el sysvinit-utils ppc64el 2.96-7 [27.5 kB] Fetched 27.5 kB in 0s (64.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_0hwt12d/sysvinit-utils_2.96-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (77.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0k_5q43_/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el base-files ppc64el 11.1 [70.0 kB] Fetched 70.0 kB in 1s (67.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0w0q41wd/base-files_11.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libtirpc-common all 1.3.2-2 [13.8 kB] Fetched 13.8 kB in 1s (27.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptt0dnsm2/libtirpc-common_1.3.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libaec-dev ppc64el 1.0.5-2 [21.7 kB] Fetched 21.7 kB in 1s (19.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbcnkkdm1/libaec-dev_1.0.5-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgomp1 ppc64el 11.2.0-2 [112 kB] Fetched 112 kB in 1s (129 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl4fqcbnh/libgomp1_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el binutils-common ppc64el 2.37-4 [2177 kB] Fetched 2177 kB in 2s (1159 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptng72rvx/binutils-common_2.37-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libbz2-1.0 ppc64el 1.0.8-4 [51.0 kB] Fetched 51.0 kB in 1s (50.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpng9bc5zs/libbz2-1.0_1.0.8-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el tar ppc64el 1.34+dfsg-1 [867 kB] Fetched 867 kB in 0s (3944 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpavu2k0h8/tar_1.34+dfsg-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2+b2 [65.9 kB] Fetched 65.9 kB in 0s (343 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbx0ts_cj/librtmp1_2.4+20151223.gitfa8646d.1-2+b2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el hostname ppc64el 3.23 [15.6 kB] Fetched 15.6 kB in 1s (29.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx_7ps_1t/hostname_3.23_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libmagic1 ppc64el 1:5.39-3 [134 kB] Fetched 134 kB in 2s (86.0 kB/s) dpkg-name: info: moved 'libmagic1_1%3a5.39-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp92s9xnfk/libmagic1_5.39-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libtsan0 ppc64el 11.2.0-2 [2114 kB] Fetched 2114 kB in 2s (1265 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp501x5m3y/libtsan0_11.2.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libcppunit-dev ppc64el 1.15.1-2 [209 kB] Fetched 209 kB in 2s (125 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx21yquve/libcppunit-dev_1.15.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libudev1 ppc64el 247.9-1 [175 kB] Fetched 175 kB in 1s (135 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptlvxxjd7/libudev1_247.9-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libhdf5-hl-100 ppc64el 1.10.6+repack-5 [90.3 kB] Fetched 90.3 kB in 1s (60.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplzpakcue/libhdf5-hl-100_1.10.6+repack-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el build-essential ppc64el 12.9 [7712 B] Fetched 7712 B in 1s (14.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp856aec13/build-essential_12.9_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el dash ppc64el 0.5.11+git20210120+802ebd4-1 [122 kB] Fetched 122 kB in 2s (80.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1lc7vjk3/dash_0.5.11+git20210120+802ebd4-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libncurses6 ppc64el 6.2+20201114-2 [116 kB] Fetched 116 kB in 1s (228 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphi6a0o2k/libncurses6_6.2+20201114-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el make ppc64el 4.3-4.1 [404 kB] Fetched 404 kB in 1s (689 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn8580mgs/make_4.3-4.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el groff-base ppc64el 1.22.4-6 [942 kB] Fetched 942 kB in 1s (1820 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl7ck7c2z/groff-base_1.22.4-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libjsoncpp24 ppc64el 1.9.4-4 [82.2 kB] Fetched 82.2 kB in 1s (72.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplqd51c03/libjsoncpp24_1.9.4-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libhdf5-103-1 ppc64el 1.10.6+repack-5 [1113 kB] Fetched 1113 kB in 1s (803 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp8_bsyaz/libhdf5-103-1_1.10.6+repack-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el linux-libc-dev ppc64el 5.10.46-4 [1357 kB] Fetched 1357 kB in 2s (789 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpllb6yhcy/linux-libc-dev_5.10.46-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libffi7 ppc64el 3.3-6 [24.1 kB] Fetched 24.1 kB in 1s (26.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprizgyyp5/libffi7_3.3-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el bsdutils ppc64el 1:2.36.1-8 [153 kB] Fetched 153 kB in 1s (120 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.36.1-8_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpc_jlkm15/bsdutils_2.36.1-8_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el gcc ppc64el 4:10.2.1-1 [5208 B] Fetched 5208 B in 1s (5305 B/s) dpkg-name: info: moved 'gcc_4%3a10.2.1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpp__enh4q/gcc_10.2.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el grep ppc64el 3.6-1 [406 kB] Fetched 406 kB in 1s (311 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_m6crnng/grep_3.6-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el bsdextrautils ppc64el 2.36.1-8 [151 kB] Fetched 151 kB in 2s (95.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp12df423a/bsdextrautils_2.36.1-8_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libattr1 ppc64el 1:2.4.48-6 [22.7 kB] Fetched 22.7 kB in 1s (26.5 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.4.48-6_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpeidaiyhi/libattr1_2.4.48-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libpsl5 ppc64el 0.21.0-1.2 [59.3 kB] Fetched 59.3 kB in 0s (303 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr7o87sqp/libpsl5_0.21.0-1.2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libpam-runtime all 1.4.0-9 [207 kB] Fetched 207 kB in 2s (105 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph0ea9as4/libpam-runtime_1.4.0-9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libxml2 ppc64el 2.9.10+dfsg-6.7 [731 kB] Fetched 731 kB in 2s (442 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpesqhyrpl/libxml2_2.9.10+dfsg-6.7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el sed ppc64el 4.7-1 [315 kB] Fetched 315 kB in 1s (590 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ltpjxtl/sed_4.7-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el cmake-data all 3.18.4-2 [1725 kB] Fetched 1725 kB in 2s (816 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzh9in_xh/cmake-data_3.18.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libmpfr6 ppc64el 4.1.0-3 [916 kB] Fetched 916 kB in 1s (1761 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2m53wegu/libmpfr6_4.1.0-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libsmartcols1 ppc64el 2.36.1-8 [168 kB] Fetched 168 kB in 2s (105 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp70a9ltmg/libsmartcols1_2.36.1-8_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgcrypt20 ppc64el 1.8.7-6 [539 kB] Fetched 539 kB in 2s (285 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxcu1clgu/libgcrypt20_1.8.7-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el libgdbm6 ppc64el 1.19-2 [68.3 kB] Fetched 68.3 kB in 1s (134 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2fvbp_ms/libgdbm6_1.19-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el diffutils ppc64el 1:3.7-5 [386 kB] Fetched 386 kB in 1s (552 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.7-5_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpq8dnyd2l/diffutils_3.7-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20210818T205324Z sid/main ppc64el ncurses-bin ppc64el 6.2+20201114-2 [432 kB] Fetched 432 kB in 2s (238 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpspkm9il7/ncurses-bin_6.2+20201114-2_ppc64el.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture ppc64el dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_ppc64el.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_ppc64el.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmptds2m98d/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture ppc64el is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.IHTHqyOOLk as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.IHTHqyOOLk 127.0.0.1 - - [14/Sep/2025 15:55:54] code 404, message File not found 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:34687 ./ InRelease 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:34687 ./ Release [462 B] 127.0.0.1 - - [14/Sep/2025 15:55:54] code 404, message File not found 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:34687 ./ Release.gpg 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:34687 ./ Packages [240 kB] Fetched 240 kB in 0s (14.8 MB/s) Reading package lists... no package providing usr-is-merged found -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./gcc-11-base_11.2.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libc6_2.31-16_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libgcc-s1_11.2.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./mawk_1.3.4.20200120-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./base-files_11.1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libtinfo6_6.2%2b20201114-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./debianutils_5.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./bash_5.1-3%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libgpg-error0_1.38-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libgcrypt20_1.8.7-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./liblz4-1_1.9.3-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./liblzma5_5.2.5-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libzstd1_1.4.8%2bdfsg-2.1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libsystemd0_247.9-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./bsdutils_2.36.1-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libacl1_2.2.53-10_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libattr1_2.4.48-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libgmp10_6.2.1%2bdfsg-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libpcre2-8-0_10.36-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libselinux1_3.1-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./coreutils_8.32-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libbz2-1.0_1.0.8-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./zlib1g_1.2.11.dfsg-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./tar_1.34%2bdfsg-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./dpkg_1.20.9_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libcrypt1_4.4.25-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./perl-base_5.32.1-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./debconf_1.5.77_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./dash_0.5.11%2bgit20210120%2b802ebd4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./diffutils_3.7-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./findutils_4.8.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libpcre3_8.39-13_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./grep_3.6-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./gzip_1.10-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./hostname_3.23_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libaudit-common_3.0.5-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libcap-ng0_0.7.9-2.2%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libaudit1_3.0.5-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libpam0g_1.4.0-9_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libdb5.3_5.3.28%2bdfsg1-0.8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libcom-err2_1.46.2-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libkrb5support0_1.18.3-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libk5crypto3_1.18.3-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libkeyutils1_1.6.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libssl1.1_1.1.1k-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libkrb5-3_1.18.3-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libgssapi-krb5-2_1.18.3-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libtirpc-common_1.3.2-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libtirpc3_1.3.2-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libnsl2_1.3.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libpam-modules-bin_1.4.0-9_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libpam-modules_1.4.0-9_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libpam-runtime_1.4.0-9_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./login_4.8.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./ncurses-bin_6.2%2b20201114-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./sed_4.7-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libblkid1_2.36.1-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libmount1_2.36.1-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libsmartcols1_2.36.1-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libudev1_247.9-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libuuid1_2.36.1-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./util-linux_2.36.1-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libdebconfclient0_0.260_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./base-passwd_3.5.51_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./init-system-helpers_1.60_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./libc-bin_2.31-16_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./ncurses-base_6.2%2b20201114-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./lsb-base_11.1.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:55:54] "GET /./sysvinit-utils_2.96-7_ppc64el.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.IHTHqyOOLk 127.0.0.1 - - [14/Sep/2025 15:55:56] code 404, message File not found 127.0.0.1 - - [14/Sep/2025 15:55:56] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:34687 ./ InRelease 127.0.0.1 - - [14/Sep/2025 15:55:56] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:34687 ./ Release 127.0.0.1 - - [14/Sep/2025 15:55:56] code 404, message File not found 127.0.0.1 - - [14/Sep/2025 15:55:56] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:34687 ./ Release.gpg Reading package lists... no package providing usr-is-merged found -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.IHTHqyOOLk no package called usr-is-merged is installed -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [14/Sep/2025 15:56:05] "GET /./bsdextrautils_2.36.1-8_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:05] "GET /./libstdc%2b%2b6_11.2.0-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:05] "GET /./libuchardet0_0.0.7-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:05] "GET /./groff-base_1.22.4-6_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:05] "GET /./libgdbm6_1.19-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:05] "GET /./libpipeline1_1.5.3-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:05] "GET /./libseccomp2_2.5.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:05] "GET /./man-db_2.9.4-2_ppc64el.deb HTTP/1.1" 200 - 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127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./intltool-debian_0.35.0%2b20060710.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./po-debconf_1.0.21%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./debhelper_13.4%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./libaec0_1.0.5-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./libboost1.74-dev_1.74.0-9_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./libboost-dev_1.74.0.3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./libsz2_1.0.5-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./zlib1g-dev_1.2.11.dfsg-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./libcppunit-1.15-0_1.15.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./libjpeg62-turbo_2.0.6-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./libjpeg62-turbo-dev_2.0.6-4_ppc64el.deb HTTP/1.1" 200 - 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127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./libhdf5-dev_1.10.6%2brepack-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./libcppunit-dev_1.15.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [14/Sep/2025 15:56:06] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmptds2m98d/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.IHTHqyOOLk Reading package lists... Building dependency tree... Reading state information... login is already the newest version (1:4.8.1-1). libaec0 is already the newest version (1.0.5-2). libaec0 set to manually installed. libboost-dev is already the newest version (1.74.0.3). libboost-dev set to manually installed. libuchardet0 is already the newest version (0.0.7-1). libuchardet0 set to manually installed. libblkid1 is already the newest version (2.36.1-8). init-system-helpers is already the newest version (1.60). libpam0g is already the newest version (1.4.0-9). libseccomp2 is already the newest version (2.5.1-1). libseccomp2 set to manually installed. libmagic-mgc is already the newest version (1:5.39-3). libmagic-mgc set to manually installed. libidn2-0 is already the newest version (2.3.2-2). libidn2-0 set to manually installed. zlib1g is already the newest version (1:1.2.11.dfsg-2). sensible-utils is already the newest version (0.0.14). sensible-utils set to manually installed. libkrb5support0 is already the newest version (1.18.3-6). ncurses-base is already the newest version (6.2+20201114-2). libsub-override-perl is already the newest version (0.09-2). libsub-override-perl set to manually installed. libcc1-0 is already the newest version (11.2.0-2). libcc1-0 set to manually installed. libc6-dev is already the newest version (2.31-16). libc6-dev set to manually installed. libgpg-error0 is already the newest version (1.38-2). libsz2 is already the newest version (1.0.5-2). libsz2 set to manually installed. readline-common is already the newest version (8.1-2). readline-common set to manually installed. coreutils is already the newest version (8.32-4). libssh2-1 is already the newest version (1.9.0-3). libssh2-1 set to manually installed. libnsl-dev is already the newest version (1.3.0-2). libnsl-dev set to manually installed. mawk is already the newest version (1.3.4.20200120-2). libc6 is already the newest version (2.31-16). perl is already the newest version (5.32.1-5). perl set to manually installed. libsystemd0 is already the newest version (247.9-1). zlib1g-dev is already the newest version (1:1.2.11.dfsg-2). zlib1g-dev set to manually installed. lsb-base is already the newest version (11.1.0). libperl5.32 is already the newest version (5.32.1-5). libperl5.32 set to manually installed. libtasn1-6 is already the newest version (4.16.0-2). libtasn1-6 set to manually installed. libarchive13 is already the newest version (3.4.3-2+b1). libarchive13 set to manually installed. libctf-nobfd0 is already the newest version (2.37-4). libctf-nobfd0 set to manually installed. file is already the newest version (1:5.39-3). file set to manually installed. libunistring2 is already the newest version (0.9.10-6). libunistring2 set to manually installed. libssl1.1 is already the newest version (1.1.1k-1). libicu67 is already the newest version (67.1-7). libicu67 set to manually installed. gcc-10-base is already the newest version (10.2.1-6). gcc-10-base set to manually installed. libexpat1 is already the newest version (2.2.10-2). libexpat1 set to manually installed. binutils-powerpc64le-linux-gnu is already the newest version (2.37-4). binutils-powerpc64le-linux-gnu set to manually installed. libcap-ng0 is already the newest version (0.7.9-2.2+b1). libbinutils is already the newest version (2.37-4). libbinutils set to manually installed. libcppunit-1.15-0 is already the newest version (1.15.1-2). libcppunit-1.15-0 set to manually installed. libpcre2-8-0 is already the newest version (10.36-2). libubsan1 is already the newest version (11.2.0-2). libubsan1 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. liblsan0 is already the newest version (11.2.0-2). liblsan0 set to manually installed. libjpeg-dev is already the newest version (1:2.0.6-4). libjpeg-dev set to manually installed. libhdf5-cpp-103-1 is already the newest version (1.10.6+repack-5). libhdf5-cpp-103-1 set to manually installed. debhelper is already the newest version (13.4+nmu1). debhelper set to manually installed. libdebconfclient0 is already the newest version (0.260). libncursesw6 is already the newest version (6.2+20201114-2). libncursesw6 set to manually installed. libk5crypto3 is already the newest version (1.18.3-6). libgnutls30 is already the newest version (3.7.1-5). libgnutls30 set to manually installed. libmount1 is already the newest version (2.36.1-8). libsigsegv2 is already the newest version (2.13-1). libsigsegv2 set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libselinux1 is already the newest version (3.1-3). libgfortran5 is already the newest version (11.2.0-2). libgfortran5 set to manually installed. libelf1 is already the newest version (0.185-2). libelf1 set to manually installed. libnsl2 is already the newest version (1.3.0-2). bash is already the newest version (5.1-3+b1). libaudit-common is already the newest version (1:3.0.5-1). perl-base is already the newest version (5.32.1-5). libnettle8 is already the newest version (3.7.3-1). libnettle8 set to manually installed. xz-utils is already the newest version (5.2.5-2). xz-utils set to manually installed. libgcc-s1 is already the newest version (11.2.0-2). autotools-dev is already the newest version (20180224.1+nmu1). autotools-dev set to manually installed. liblz4-1 is already the newest version (1.9.3-2). libgmp10 is already the newest version (2:6.2.1+dfsg-1). automake is already the newest version (1:1.16.4-1). automake set to manually installed. libuuid1 is already the newest version (2.36.1-8). bzip2 is already the newest version (1.0.8-4). bzip2 set to manually installed. libasan6 is already the newest version (11.2.0-2). libasan6 set to manually installed. libgssapi-krb5-2 is already the newest version (1.18.3-6). libp11-kit0 is already the newest version (0.23.22-1). libp11-kit0 set to manually installed. libcrypt-dev is already the newest version (1:4.4.25-1). libcrypt-dev set to manually installed. libjpeg62-turbo is already the newest version (1:2.0.6-4). libjpeg62-turbo set to manually installed. libpipeline1 is already the newest version (1.5.3-1). libpipeline1 set to manually installed. libaudit1 is already the newest version (1:3.0.5-1). findutils is already the newest version (4.8.0-1). gcc-10 is already the newest version (10.2.1-6). gcc-10 set to manually installed. libisl23 is already the newest version (0.23-1). libisl23 set to manually installed. libtool is already the newest version (2.4.6-15). libtool set to manually installed. libpcre3 is already the newest version (2:8.39-13). libquadmath0 is already the newest version (11.2.0-2). libquadmath0 set to manually installed. man-db is already the newest version (2.9.4-2). man-db set to manually installed. bc is already the newest version (1.07.1-2+b2). bc set to manually installed. dpkg-dev is already the newest version (1.20.9). dpkg-dev set to manually installed. gettext-base is already the newest version (0.21-4). gettext-base set to manually installed. libgcc-10-dev is already the newest version (10.2.1-6). libgcc-10-dev set to manually installed. gcc-11-base is already the newest version (11.2.0-2). libzstd1 is already the newest version (1.4.8+dfsg-2.1). intltool-debian is already the newest version (0.35.0+20060710.5). intltool-debian set to manually installed. cmake is already the newest version (3.18.4-2). cmake set to manually installed. libboost1.74-dev is already the newest version (1.74.0-9). libboost1.74-dev set to manually installed. autopoint is already the newest version (0.21-4). autopoint set to manually installed. libpam-modules is already the newest version (1.4.0-9). libstdc++-10-dev is already the newest version (10.2.1-6). libstdc++-10-dev set to manually installed. libitm1 is already the newest version (11.2.0-2). libitm1 set to manually installed. libreadline8 is already the newest version (8.1-2). libreadline8 set to manually installed. libtirpc-dev is already the newest version (1.3.2-2). libtirpc-dev set to manually installed. rpcsvc-proto is already the newest version (1.4.2-3). rpcsvc-proto set to manually installed. libcurl4 is already the newest version (7.74.0-1.3+b1). libcurl4 set to manually installed. libprocps8 is already the newest version (2:3.3.17-5). libprocps8 set to manually installed. libnghttp2-14 is already the newest version (1.43.0-1). libnghttp2-14 set to manually installed. gettext is already the newest version (0.21-4). gettext set to manually installed. libsasl2-2 is already the newest version (2.1.27+dfsg-2.1). libsasl2-2 set to manually installed. libatomic1 is already the newest version (11.2.0-2). libatomic1 set to manually installed. libgdbm-compat4 is already the newest version (1.19-2). libgdbm-compat4 set to manually installed. libsasl2-modules-db is already the newest version (2.1.27+dfsg-2.1). libsasl2-modules-db set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. libdebhelper-perl is already the newest version (13.4+nmu1). libdebhelper-perl set to manually installed. libmpc3 is already the newest version (1.2.0-1). libmpc3 set to manually installed. cpp-10 is already the newest version (10.2.1-6). cpp-10 set to manually installed. autoconf is already the newest version (2.69-14). autoconf set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.12.0-1). libfile-stripnondeterminism-perl set to manually installed. libctf0 is already the newest version (2.37-4). libctf0 set to manually installed. procps is already the newest version (2:3.3.17-5). procps set to manually installed. debianutils is already the newest version (5.1-1). libbrotli1 is already the newest version (1.0.9-2+b2). libbrotli1 set to manually installed. libtirpc3 is already the newest version (1.3.2-2). dwz is already the newest version (0.14-1). dwz set to manually installed. util-linux is already the newest version (2.36.1-8). libhdf5-hl-fortran-100 is already the newest version (1.10.6+repack-5). libhdf5-hl-fortran-100 set to manually installed. binutils is already the newest version (2.37-4). binutils set to manually installed. dpkg is already the newest version (1.20.9). libjpeg62-turbo-dev is already the newest version (1:2.0.6-4). libjpeg62-turbo-dev set to manually installed. libkeyutils1 is already the newest version (1.6.1-2). libc-dev-bin is already the newest version (2.31-16). libc-dev-bin set to manually installed. gzip is already the newest version (1.10-4). libdb5.3 is already the newest version (5.3.28+dfsg1-0.8). cpp is already the newest version (4:10.2.1-1). cpp set to manually installed. libacl1 is already the newest version (2.2.53-10). libc-bin is already the newest version (2.31-16). debconf is already the newest version (1.5.77). libhdf5-fortran-102 is already the newest version (1.10.6+repack-5). libhdf5-fortran-102 set to manually installed. g++-10 is already the newest version (10.2.1-6). g++-10 set to manually installed. m4 is already the newest version (1.4.18-5). m4 set to manually installed. base-passwd is already the newest version (3.5.51). libdpkg-perl is already the newest version (1.20.9). libdpkg-perl set to manually installed. libldap-2.4-2 is already the newest version (2.4.57+dfsg-3). libldap-2.4-2 set to manually installed. libuv1 is already the newest version (1.40.0-2). libuv1 set to manually installed. libhdf5-hl-cpp-100 is already the newest version (1.10.6+repack-5). libhdf5-hl-cpp-100 set to manually installed. hdf5-helpers is already the newest version (1.10.6+repack-5). hdf5-helpers set to manually installed. g++ is already the newest version (4:10.2.1-1). g++ set to manually installed. libcrypt1 is already the newest version (1:4.4.25-1). dh-strip-nondeterminism is already the newest version (1.12.0-1). dh-strip-nondeterminism set to manually installed. libstdc++6 is already the newest version (11.2.0-2). libstdc++6 set to manually installed. libtinfo6 is already the newest version (6.2+20201114-2). libhdf5-dev is already the newest version (1.10.6+repack-5). libhdf5-dev set to manually installed. libhogweed6 is already the newest version (3.7.3-1). libhogweed6 set to manually installed. libcom-err2 is already the newest version (1.46.2-2). libkrb5-3 is already the newest version (1.18.3-6). liblzma5 is already the newest version (5.2.5-2). libpam-modules-bin is already the newest version (1.4.0-9). librhash0 is already the newest version (1.4.1-2). librhash0 set to manually installed. perl-modules-5.32 is already the newest version (5.32.1-5). perl-modules-5.32 set to manually installed. sysvinit-utils is already the newest version (2.96-7). dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. base-files is already the newest version (11.1). libtirpc-common is already the newest version (1.3.2-2). libaec-dev is already the newest version (1.0.5-2). libaec-dev set to manually installed. libgomp1 is already the newest version (11.2.0-2). libgomp1 set to manually installed. binutils-common is already the newest version (2.37-4). binutils-common set to manually installed. libbz2-1.0 is already the newest version (1.0.8-4). tar is already the newest version (1.34+dfsg-1). librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b2). librtmp1 set to manually installed. hostname is already the newest version (3.23). libmagic1 is already the newest version (1:5.39-3). libmagic1 set to manually installed. libtsan0 is already the newest version (11.2.0-2). libtsan0 set to manually installed. libcppunit-dev is already the newest version (1.15.1-2). libcppunit-dev set to manually installed. libudev1 is already the newest version (247.9-1). libhdf5-hl-100 is already the newest version (1.10.6+repack-5). libhdf5-hl-100 set to manually installed. build-essential is already the newest version (12.9). build-essential set to manually installed. dash is already the newest version (0.5.11+git20210120+802ebd4-1). libncurses6 is already the newest version (6.2+20201114-2). libncurses6 set to manually installed. make is already the newest version (4.3-4.1). make set to manually installed. groff-base is already the newest version (1.22.4-6). groff-base set to manually installed. libjsoncpp24 is already the newest version (1.9.4-4). libjsoncpp24 set to manually installed. libhdf5-103-1 is already the newest version (1.10.6+repack-5). libhdf5-103-1 set to manually installed. linux-libc-dev is already the newest version (5.10.46-4). linux-libc-dev set to manually installed. libffi7 is already the newest version (3.3-6). libffi7 set to manually installed. bsdutils is already the newest version (1:2.36.1-8). gcc is already the newest version (4:10.2.1-1). gcc set to manually installed. grep is already the newest version (3.6-1). bsdextrautils is already the newest version (2.36.1-8). bsdextrautils set to manually installed. libattr1 is already the newest version (1:2.4.48-6). libpsl5 is already the newest version (0.21.0-1.2). libpsl5 set to manually installed. libpam-runtime is already the newest version (1.4.0-9). libxml2 is already the newest version (2.9.10+dfsg-6.7). libxml2 set to manually installed. sed is already the newest version (4.7-1). cmake-data is already the newest version (3.18.4-2). cmake-data set to manually installed. libmpfr6 is already the newest version (4.1.0-3). libmpfr6 set to manually installed. libsmartcols1 is already the newest version (2.36.1-8). libgcrypt20 is already the newest version (1.8.7-6). libgdbm6 is already the newest version (1.19-2). libgdbm6 set to manually installed. diffutils is already the newest version (1:3.7-5). ncurses-bin is already the newest version (6.2+20201114-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.IHTHqyOOLk (Reading database ... 30484 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.IHTHqyOOLk I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.IHTHqyOOLk I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.IHTHqyOOLk... I: success in 54.1360 seconds Downloading dependency 1 of 199: login:ppc64el=1:4.8.1-1 Downloading dependency 2 of 199: libaec0:ppc64el=1.0.5-2 Downloading dependency 3 of 199: libboost-dev:ppc64el=1.74.0.3 Downloading dependency 4 of 199: libuchardet0:ppc64el=0.0.7-1 Downloading dependency 5 of 199: libblkid1:ppc64el=2.36.1-8 Downloading dependency 6 of 199: init-system-helpers:ppc64el=1.60 Downloading dependency 7 of 199: libpam0g:ppc64el=1.4.0-9 Downloading dependency 8 of 199: libseccomp2:ppc64el=2.5.1-1 Downloading dependency 9 of 199: libmagic-mgc:ppc64el=1:5.39-3 Downloading dependency 10 of 199: libidn2-0:ppc64el=2.3.2-2 Downloading dependency 11 of 199: zlib1g:ppc64el=1:1.2.11.dfsg-2 Downloading dependency 12 of 199: sensible-utils:ppc64el=0.0.14 Downloading dependency 13 of 199: libkrb5support0:ppc64el=1.18.3-6 Downloading dependency 14 of 199: ncurses-base:ppc64el=6.2+20201114-2 Downloading dependency 15 of 199: libsub-override-perl:ppc64el=0.09-2 Downloading dependency 16 of 199: libcc1-0:ppc64el=11.2.0-2 Downloading dependency 17 of 199: libc6-dev:ppc64el=2.31-16 Downloading dependency 18 of 199: libgpg-error0:ppc64el=1.38-2 Downloading dependency 19 of 199: libsz2:ppc64el=1.0.5-2 Downloading dependency 20 of 199: readline-common:ppc64el=8.1-2 Downloading dependency 21 of 199: coreutils:ppc64el=8.32-4 Downloading dependency 22 of 199: libssh2-1:ppc64el=1.9.0-3 Downloading dependency 23 of 199: libnsl-dev:ppc64el=1.3.0-2 Downloading dependency 24 of 199: mawk:ppc64el=1.3.4.20200120-2 Downloading dependency 25 of 199: libc6:ppc64el=2.31-16 Downloading dependency 26 of 199: perl:ppc64el=5.32.1-5 Downloading dependency 27 of 199: libsystemd0:ppc64el=247.9-1 Downloading dependency 28 of 199: zlib1g-dev:ppc64el=1:1.2.11.dfsg-2 Downloading dependency 29 of 199: lsb-base:ppc64el=11.1.0 Downloading dependency 30 of 199: libperl5.32:ppc64el=5.32.1-5 Downloading dependency 31 of 199: libtasn1-6:ppc64el=4.16.0-2 Downloading dependency 32 of 199: libarchive13:ppc64el=3.4.3-2+b1 Downloading dependency 33 of 199: libctf-nobfd0:ppc64el=2.37-4 Downloading dependency 34 of 199: file:ppc64el=1:5.39-3 Downloading dependency 35 of 199: libunistring2:ppc64el=0.9.10-6 Downloading dependency 36 of 199: libssl1.1:ppc64el=1.1.1k-1 Downloading dependency 37 of 199: libicu67:ppc64el=67.1-7 Downloading dependency 38 of 199: gcc-10-base:ppc64el=10.2.1-6 Downloading dependency 39 of 199: libexpat1:ppc64el=2.2.10-2 Downloading dependency 40 of 199: binutils-powerpc64le-linux-gnu:ppc64el=2.37-4 Downloading dependency 41 of 199: libcap-ng0:ppc64el=0.7.9-2.2+b1 Downloading dependency 42 of 199: libbinutils:ppc64el=2.37-4 Downloading dependency 43 of 199: libcppunit-1.15-0:ppc64el=1.15.1-2 Downloading dependency 44 of 199: libpcre2-8-0:ppc64el=10.36-2 Downloading dependency 45 of 199: libubsan1:ppc64el=11.2.0-2 Downloading dependency 46 of 199: libarchive-zip-perl:ppc64el=1.68-1 Downloading dependency 47 of 199: liblsan0:ppc64el=11.2.0-2 Downloading 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libldap-2.4-2:ppc64el=2.4.57+dfsg-3 Downloading dependency 143 of 199: libuv1:ppc64el=1.40.0-2 Downloading dependency 144 of 199: libhdf5-hl-cpp-100:ppc64el=1.10.6+repack-5 Downloading dependency 145 of 199: hdf5-helpers:ppc64el=1.10.6+repack-5 Downloading dependency 146 of 199: g++:ppc64el=4:10.2.1-1 Downloading dependency 147 of 199: libcrypt1:ppc64el=1:4.4.25-1 Downloading dependency 148 of 199: dh-strip-nondeterminism:ppc64el=1.12.0-1 Downloading dependency 149 of 199: libstdc++6:ppc64el=11.2.0-2 Downloading dependency 150 of 199: libtinfo6:ppc64el=6.2+20201114-2 Downloading dependency 151 of 199: libhdf5-dev:ppc64el=1.10.6+repack-5 Downloading dependency 152 of 199: libhogweed6:ppc64el=3.7.3-1 Downloading dependency 153 of 199: libcom-err2:ppc64el=1.46.2-2 Downloading dependency 154 of 199: libkrb5-3:ppc64el=1.18.3-6 Downloading dependency 155 of 199: liblzma5:ppc64el=5.2.5-2 Downloading dependency 156 of 199: libpam-modules-bin:ppc64el=1.4.0-9 Downloading dependency 157 of 199: librhash0:ppc64el=1.4.1-2 Downloading dependency 158 of 199: perl-modules-5.32:ppc64el=5.32.1-5 Downloading dependency 159 of 199: sysvinit-utils:ppc64el=2.96-7 Downloading dependency 160 of 199: dh-autoreconf:ppc64el=20 Downloading dependency 161 of 199: base-files:ppc64el=11.1 Downloading dependency 162 of 199: libtirpc-common:ppc64el=1.3.2-2 Downloading dependency 163 of 199: libaec-dev:ppc64el=1.0.5-2 Downloading dependency 164 of 199: libgomp1:ppc64el=11.2.0-2 Downloading dependency 165 of 199: binutils-common:ppc64el=2.37-4 Downloading dependency 166 of 199: libbz2-1.0:ppc64el=1.0.8-4 Downloading dependency 167 of 199: tar:ppc64el=1.34+dfsg-1 Downloading dependency 168 of 199: librtmp1:ppc64el=2.4+20151223.gitfa8646d.1-2+b2 Downloading dependency 169 of 199: hostname:ppc64el=3.23 Downloading dependency 170 of 199: libmagic1:ppc64el=1:5.39-3 Downloading dependency 171 of 199: libtsan0:ppc64el=11.2.0-2 Downloading dependency 172 of 199: libcppunit-dev:ppc64el=1.15.1-2 Downloading dependency 173 of 199: libudev1:ppc64el=247.9-1 Downloading dependency 174 of 199: libhdf5-hl-100:ppc64el=1.10.6+repack-5 Downloading dependency 175 of 199: build-essential:ppc64el=12.9 Downloading dependency 176 of 199: dash:ppc64el=0.5.11+git20210120+802ebd4-1 Downloading dependency 177 of 199: libncurses6:ppc64el=6.2+20201114-2 Downloading dependency 178 of 199: make:ppc64el=4.3-4.1 Downloading dependency 179 of 199: groff-base:ppc64el=1.22.4-6 Downloading dependency 180 of 199: libjsoncpp24:ppc64el=1.9.4-4 Downloading dependency 181 of 199: libhdf5-103-1:ppc64el=1.10.6+repack-5 Downloading dependency 182 of 199: linux-libc-dev:ppc64el=5.10.46-4 Downloading dependency 183 of 199: libffi7:ppc64el=3.3-6 Downloading dependency 184 of 199: bsdutils:ppc64el=1:2.36.1-8 Downloading dependency 185 of 199: gcc:ppc64el=4:10.2.1-1 Downloading dependency 186 of 199: grep:ppc64el=3.6-1 Downloading dependency 187 of 199: bsdextrautils:ppc64el=2.36.1-8 Downloading dependency 188 of 199: libattr1:ppc64el=1:2.4.48-6 Downloading dependency 189 of 199: libpsl5:ppc64el=0.21.0-1.2 Downloading dependency 190 of 199: libpam-runtime:ppc64el=1.4.0-9 Downloading dependency 191 of 199: libxml2:ppc64el=2.9.10+dfsg-6.7 Downloading dependency 192 of 199: sed:ppc64el=4.7-1 Downloading dependency 193 of 199: cmake-data:ppc64el=3.18.4-2 Downloading dependency 194 of 199: libmpfr6:ppc64el=4.1.0-3 Downloading dependency 195 of 199: libsmartcols1:ppc64el=2.36.1-8 Downloading dependency 196 of 199: libgcrypt20:ppc64el=1.8.7-6 Downloading dependency 197 of 199: libgdbm6:ppc64el=1.19-2 Downloading dependency 198 of 199: diffutils:ppc64el=1:3.7-5 Downloading dependency 199 of 199: ncurses-bin:ppc64el=6.2+20201114-2 env --chdir=/srv/rebuilderd/tmp/rebuilderdjjP6XG/out DEB_BUILD_OPTIONS=parallel=4 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 SOURCE_DATE_EPOCH=1629447704 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildwxJxUy/debrebuild.sbuildrc.B6Za_B5B3O8P sbuild --build=ppc64el --host=ppc64el --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildwxJxUy/debrebuild.tar.gXu78bPrKKl2 --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --starting-build-commands=grep -iq "^Rules-Requires-Root:" "%p/debian/control" || sed -i "1iRules-Requires-Root: no" "%p/debian/control" --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/mapsembler2-eMgHPi --dsc-dir=mapsembler2-2.2.4+dfsg1 /srv/rebuilderd/tmp/rebuilderdjjP6XG/inputs/mapsembler2_2.2.4+dfsg1-4.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on osuosl7-ppc64el.debian.net +==============================================================================+ | mapsembler2 2.2.4+dfsg1-4 (ppc64el) Sun, 14 Sep 2025 15:56:48 +0000 | +==============================================================================+ Package: mapsembler2 Version: 2.2.4+dfsg1-4 Source Version: 2.2.4+dfsg1-4 Distribution: unstable Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildwxJxUy/debrebuild.tar.gXu78bPrKKl2 to /srv/rebuilderd/tmp/tmp.sbuild.X829Jhf5Yu... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sun, 14 Sep 2025 15:56:56 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdjjP6XG/inputs/mapsembler2_2.2.4+dfsg1-4.dsc exists in /srv/rebuilderd/tmp/rebuilderdjjP6XG/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 14 Sep 2025 15:56:57 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/mapsembler2-eMgHPi/resolver-9bwcvi/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sun, 14 Sep 2025 15:57:00 +0000 | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in amd64 arm64 kfreebsd-amd64 ppc64el s390x) +------------------------------------------------------------------------------+ | Build environment Sun, 14 Sep 2025 15:57:01 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.43+deb13-powerpc64le-64k #1 SMP Debian 6.12.43-1 (2025-08-27) ppc64el (ppc64le) Toolchain package versions: binutils_2.37-4 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-16 libstdc++-10-dev_10.2.1-6 libstdc++6_11.2.0-2 linux-libc-dev_5.10.46-4 Package versions: autoconf_2.69-14 automake_1:1.16.4-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.51 bash_5.1-3+b1 bc_1.07.1-2+b2 binutils_2.37-4 binutils-common_2.37-4 binutils-powerpc64le-linux-gnu_2.37-4 bsdextrautils_2.36.1-8 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 cmake_3.18.4-2 cmake-data_3.18.4-2 coreutils_8.32-4 cpp_4:10.2.1-1 cpp-10_10.2.1-6 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.4+nmu1 debianutils_5.1-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-dev_1.20.9 dwz_0.14-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.2.1-6 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-base_10.2.1-6 gcc-11-base_11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hdf5-helpers_1.10.6+repack-5 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libaec-dev_1.0.5-2 libaec0_1.0.5-2 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2+b1 libasan6_11.2.0-2 libatomic1_11.2.0-2 libattr1_1:2.4.48-6 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-4 libblkid1_2.36.1-8 libboost-dev_1.74.0.3 libboost1.74-dev_1.74.0-9 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-4 libc-bin_2.31-16 libc-dev-bin_2.31-16 libc6_2.31-16 libc6-dev_2.31-16 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-2 libcom-err2_1.46.2-2 libcppunit-1.15-0_1.15.1-2 libcppunit-dev_1.15.1-2 libcrypt-dev_1:4.4.25-1 libcrypt1_1:4.4.25-1 libctf-nobfd0_2.37-4 libctf0_2.37-4 libcurl4_7.74.0-1.3+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.4+nmu1 libdpkg-perl_1.20.9 libelf1_0.185-2 libexpat1_2.2.10-2 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.2.1-6 libgcc-s1_11.2.0-2 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_11.2.0-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_11.2.0-2 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libhdf5-103-1_1.10.6+repack-5 libhdf5-cpp-103-1_1.10.6+repack-5 libhdf5-dev_1.10.6+repack-5 libhdf5-fortran-102_1.10.6+repack-5 libhdf5-hl-100_1.10.6+repack-5 libhdf5-hl-cpp-100_1.10.6+repack-5 libhdf5-hl-fortran-100_1.10.6+repack-5 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libitm1_11.2.0-2 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libldap-2.4-2_2.4.57+dfsg-3 liblsan0_11.2.0-2 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 libquadmath0_11.2.0-2 libreadline8_8.1-2 librhash0_1.4.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libssh2-1_1.9.0-3 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6 libstdc++6_11.2.0-2 libsub-override-perl_0.09-2 libsystemd0_247.9-1 libsz2_1.0.5-2 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-2 libubsan1_11.2.0-2 libuchardet0_0.0.7-1 libudev1_247.9-1 libunistring2_0.9.10-6 libuuid1_2.36.1-8 libuv1_1.40.0-2 libxml2_2.9.10+dfsg-6.7 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.46-4 login_1:4.8.1-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 readline-common_8.1-2 rpcsvc-proto_1.4.2-3 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 util-linux_2.36.1-8 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build Sun, 14 Sep 2025 15:57:01 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mapsembler2 Binary: mapsembler2 Architecture: amd64 arm64 kfreebsd-amd64 ppc64el s390x Version: 2.2.4+dfsg1-4 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Étienne Mollier Homepage: http://colibread.inria.fr/mapsembler2/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/mapsembler2 Vcs-Git: https://salsa.debian.org/med-team/mapsembler2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev Package-List: mapsembler2 deb science optional arch=amd64,arm64,kfreebsd-amd64,ppc64el,s390x Checksums-Sha1: a9219b84bbe33544c2c239e148d2df5cd3593ba3 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz 34ee1b7875f7a387b82d5722e02250c03abacabb 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz Checksums-Sha256: 44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz Files: 5c9add3cf5d9cfbd1c340efe580408e2 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz 79133654b404d6857bfc0a5c117242d1 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmEfaZkUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp1RA/8CcQNm9Rt2n36IFvhbeN3yhIpNriR xBi4sVJkdTLb+7ho9T0/w7oCa/eKNzsFftal8xvlUeFBHdl1kiweFrEfg9s9fLPn f+yOmcHwKxIu5dBAGINz/xekJcATMH54hoDzoMo0VkvydkdPNxz587oyVTQDb9P2 4FmADNf6O6c2yTASy6nRh4/EYPmalzV3GK2yOedU+rloKwY6SpxqgrGrECTsH5yd /aHPuQrWSX0LzvHWgH+ra1bHZZHDQZGHmJkrB2lPHX+2JYFnICB1m84NQWTSSiIZ mxJXL1hX/bxnRg8QUSTwaf13rz0A4cccwBrGuXNb9v6R7ehA6RdYoRDnHP0Jd1OS eT0sSQQ4WQr/+awstq/5TRlFGdVWmu7wSNqHeLRJARtR9Mms04J+N6aOJpgzUt7T 2fQafMWGN6oscwYpX5AMZOaVaNeMSK3nBcYrXOMHe0I6/pKEjD46zzhCRwVrz+ar LJNVN8lFcNvnZ7KsGUcuYI/izkNlDyxgkYC6zwC5/cKNkuRcvgcV7TlU7WYlkuL3 32KnoYpZBIHH/HXAm5ChYNxwyQ0r6PLGT62HaKthOXYOYvkuUasmwpOsW8rQ6H3y qmlH90ggdGFtnRH/bAhuwERZZ0efOPVrjkd6J5f5aE+SUNn19kyPCq86pXRZrniW A31QqU7zRJANEEU= =qNGY -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify signature on ./mapsembler2_2.2.4+dfsg1-4.dsc since GnuPG is not installed dpkg-source: info: extracting mapsembler2 in /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1 dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1.orig.tar.xz dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch dpkg-source: info: applying libgomp.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying no_std_hash_redefinition.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying check_memory.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc11.patch Install fakeroot ---------------- Setup apt archive ----------------- Merged Build-Depends: fakeroot Filtered Build-Depends: fakeroot dpkg-deb: building package 'sbuild-build-depends-fakeroot-dummy' in '/build/mapsembler2-eMgHPi/resolver-9bwcvi/apt_archive/sbuild-build-depends-fakeroot-dummy.deb'. Install fakeroot build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sun, 14 Sep 2025 15:57:05 +0000 | +------------------------------------------------------------------------------+ grep -iq "^Rules-Requires-Root:" "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/debian/control" ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ I: Finished running 'grep -iq "^Rules-Requires-Root:" "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/debian/control"'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1629447704 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads' rm -f kissreads/mapsembler2_kissreads dh_clean make[1]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1' dh_auto_configure --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/powerpc64le-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success -- gatb-core is here '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core' -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.32.1") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - done CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:12 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "int128_t_USE__uint128_t" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:34 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build dh_auto_build --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -S/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities -B/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend make[4]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= Dependee "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake" is newer than depender "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend.internal". Dependee "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend.internal". Dependee "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/DependInfo.cmake" is newer than depender "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend.internal". Dependee "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend.internal". Scanning dependencies of target emphf_copyasis make[4]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build make[4]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/base_hash.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitpair_vector.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitstream.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/common.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_generic.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_hem.cpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan.cpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan_mmap.cpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_seq.cpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/emphf_config.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/gen_synthetic_data.cpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_scan.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_seq.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/internal_memory_model.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mmap_memory_model.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf_hem.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_edge_list.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_vector.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/perfutils.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/ranked_bitpair_vector.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf.cpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_generic.hpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_hem.cpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 6%] Built target emphf_copyasis [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRegistery.cpp [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 566 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function ‘static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 590 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function ‘gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); | ~^ ~~~~~~~~~~~~~~ | | | | int long int | %ld In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In member function ‘void gatb::core::tools::collections::impl::BagCountCompressedFile::write(u_int8_t, Item) [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:253:10: note: the ABI of passing aggregates with 16-byte alignment has changed in GCC 5 253 | void write (u_int8_t abundance,Item elem) { | ^~~~~ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function ‘gatb::core::debruijn::impl::Graph::Vector gatb::core::debruijn::impl::Graph::getEdgeValues(const Value&) const’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:1488:21: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1488 | Graph::Vector Graph::getEdgeValues (const Node::Value& kmer) const | ^~~~~ [ 31%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.cpp [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/math/LargeInt.hpp:36, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:39, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:27, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = long int; _Tp = gatb::core::tools::math::LargeInt<2>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: the ABI of passing aggregates with 16-byte alignment has changed in GCC 5 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In member function ‘void gatb::core::tools::collections::impl::BagCountCompressedFile::write(u_int8_t, Item) [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:253:10: note: the ABI of passing aggregates with 16-byte alignment has changed in GCC 5 253 | void write (u_int8_t abundance,Item elem) { | ^~~~~ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp: In member function ‘gatb::core::kmer::impl::SortingCountAlgorithm& gatb::core::kmer::impl::SortingCountAlgorithm::operator=(const gatb::core::kmer::impl::SortingCountAlgorithm&) [with long unsigned int span = 32]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:191:30: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 191 | SortingCountAlgorithm& SortingCountAlgorithm::operator= (const SortingCountAlgorithm& s) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp: In member function ‘gatb::core::kmer::impl::SortingCountAlgorithm& gatb::core::kmer::impl::SortingCountAlgorithm::operator=(const gatb::core::kmer::impl::SortingCountAlgorithm&) [with long unsigned int span = 64]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:191:30: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 191 | SortingCountAlgorithm& SortingCountAlgorithm::operator= (const SortingCountAlgorithm& s) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp: In member function ‘gatb::core::kmer::impl::SortingCountAlgorithm& gatb::core::kmer::impl::SortingCountAlgorithm::operator=(const gatb::core::kmer::impl::SortingCountAlgorithm&) [with long unsigned int span = 96]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:191:30: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 191 | SortingCountAlgorithm& SortingCountAlgorithm::operator= (const SortingCountAlgorithm& s) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor ‘gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.cpp [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd 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ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 62%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 65%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 65%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp: In member function ‘gatb::core::kmer::impl::SortingCountAlgorithm& gatb::core::kmer::impl::SortingCountAlgorithm::operator=(const gatb::core::kmer::impl::SortingCountAlgorithm&) [with long unsigned int span = 128]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:191:30: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 191 | SortingCountAlgorithm& SortingCountAlgorithm::operator= (const SortingCountAlgorithm& s) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Progress.cpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp: In member function ‘void gatb::core::tools::misc::impl::OptionsParser::buildProperties()’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:336:26: warning: ISO C++ forbids converting a string constant to ‘va_list’ {aka ‘char*’} [-Wwrite-strings] 336 | _properties->add (0, "input"); | ^~~~~~~ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function ‘static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:397:43: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat=] 397 | snprintf (buffer, sizeof(buffer), "%lld", value); | ~~~^ ~~~~~ | | | | | long int | long long int | %ld [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of ‘gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function ‘void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of ‘int vasprintf(char**, const char*, __gnuc_va_list)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 82%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/None/libgatbcore.a CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o /usr/bin/ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 82%] Built target gatbcore-static make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/depend make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend make[4]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake --color= cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build 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"/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/DependInfo.cmake" is newer than depender "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/depend.internal". Dependee "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake" is newer than depender "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend.internal". Dependee "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake" is newer than depender "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend.internal". Dependee "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend.internal". Dependee "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend.internal". Dependee "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/depend.internal". Scanning dependencies of target dbgh5 Scanning dependencies of target dbginfo make[4]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build Scanning dependencies of target mapsembler2_extremities make[4]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/build make[4]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 86%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp [ 86%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp [ 86%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp /usr/bin/c++ -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -o CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -c /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp:20: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function ‘size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)’: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 93%] Linking CXX executable ../bin/None/dbgh5 cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/powerpc64le-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 [ 96%] Linking CXX executable ../bin/None/dbginfo cd /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/powerpc64le-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbginfo make[4]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbgh5 [100%] Linking CXX executable mapsembler2_extremities /usr/bin/cmake -E cmake_link_script CMakeFiles/mapsembler2_extremities.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/powerpc64le-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -o mapsembler2_extremities ext/gatb-core/lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [100%] Built target mapsembler2_extremities make[3]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -E cmake_progress_start /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles 0 make[2]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' dh_auto_build --sourcedirectory=mapsembler2_extend -- k=29 cd mapsembler2_extend && make -j4 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bank.cpp: In member function ‘void Bank::init(char**, int)’: ../minia/Bank.cpp:282:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 282 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘void BinaryBank::open(bool)’: ../minia/Bank.cpp:713:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 713 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘void BinaryReads::open(bool)’: ../minia/Bank.cpp:798:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 798 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function ‘int KmersBuffer::readkmers()’: ../minia/Bank.cpp:988:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 988 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bloom.cpp: In member function ‘void Bloom::load(char*)’: ../minia/Bloom.cpp:256:51: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | printf("loading bloom filter from file, nelem %lli \n",nchar); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Bloom.cpp:257:7: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 257 | fread(blooma, sizeof(unsigned char), nchar, file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)’: ../minia/Terminator.cpp:275:105: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 275 | fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp:303:89: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Terminator.cpp:303:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)’: ../minia/Terminator.cpp:337:38: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 337 | fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Set.cpp: In member function ‘void AssocPairedSet::load(char*)’: ../minia/Set.cpp:290:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 290 | fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function ‘uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)’: ../minia/Utils.cpp:434:100: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 434 | if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); | ~~~^ ~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Utils.cpp: In instantiation of ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:167:85: required from here ../minia/Utils.cpp:121:53: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Utils.cpp:121:79: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:187:14: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 187 | ftruncate(fileno(F_kmercpt_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:199:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘char* return_file_name(const char*)’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: ../minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp: In function ‘void sorting_count(Bank*, char*, int, int, bool, int, bool)’: ../minia/SortingCount.cpp:56:15: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | getcwd(current_path,sizeof(current_path)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 283 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:19: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 537 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp:45:25: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] 45 | sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:867, from ../minia/SortingCount.h:1, from ../minia/SortingCount.cpp:1: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 1280 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Debloom.cpp: In function ‘int debloom(int, int)’: ../minia/Debloom.cpp:154:89: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 154 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:158:26: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 158 | fprintf(stderr,"\n%lli kmers written\n",cc); | ~~~^ ~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:191:76: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 191 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:195:58: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:195:65: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp:208:34: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 208 | fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:225:81: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 225 | fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Debloom.cpp: In function ‘Set* load_false_positives()’: ../minia/Debloom.cpp:280:112: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 280 | if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Debloom.cpp:284:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 284 | fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Debloom.cpp: In function ‘void print_size_summary(FPSet*)’: ../minia/Debloom.cpp:445:50: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 445 | fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:448:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 448 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function ‘void print_size_summary(FPSetCascading4*)’: ../minia/Debloom.cpp:465:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 465 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function ‘void end_debloom_partition(bool)’: ../minia/Debloom.cpp:29:11: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o commons.o -c commons.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/powerpc64le-linux-gnu/hdf5/serial mapsembler_extend.cpp: In function ‘int main(int, char**)’: mapsembler_extend.cpp:145:50: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 145 | printf(" Will use genome_size=%llu\n", genome_size); //TODO format | ~~~^ ~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long unsigned int | %lu mapsembler_extend.cpp:320:76: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 320 | command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' dh_auto_build --sourcedirectory=kissreads_graph -- k=29 cd kissreads_graph && make -j4 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph' g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 DeBruijnGraph.cpp: In member function ‘void DBG::index_nodes()’: DeBruijnGraph.cpp:952:41: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 952 | printf("total seeds in fragments %lli size %lli MB \n",total_seeds,total_seeds*sizeof(couple)/1024LL/1024LL); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 In file included from /usr/include/string.h:495, from Fragment.h:2, from DeBruijnGraph.h:8, from DeBruijnGraph.cpp:8: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘void DBG::_ZN3DBG15set_firstNodeIdEPc.part.0(char*)’ at DeBruijnGraph.cpp:373:29: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DeBruijnGraph.cpp: In member function ‘void DBG::_ZN3DBG15set_firstNodeIdEPc.part.0(char*)’: DeBruijnGraph.cpp:373:29: note: length computed here 373 | if(set_line!=NULL) strncpy(set_line,firstNodeId,strlen(firstNodeId)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFind(HashTable*, u_long)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1227 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFindLast(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1232 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashFirstBucket(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1296:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1296 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HTItem* HashNextBucket(HashTable*)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro ‘READ_UL’ 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1306:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1306 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)’: read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1413 | fread(szMagicKey, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro ‘READ_UL’ 1422 | READ_UL(fp, ht->cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro ‘READ_UL’ 1423 | READ_UL(fp, ht->cItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro ‘READ_UL’ 1424 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro ‘READ_UL’ 1427 | READ_UL(fp, cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1429 | fread(rgchKeys, 1, cchKey, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro ‘READ_UL’ 1434 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp: In function ‘u_long SparseRead(FILE*, SparseBin**)’: read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro ‘READ_UL’ 628 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:633:3: note: in expansion of macro ‘READ_UL’ 633 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/read_coherence.cpp: In function ‘char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)’: read_coherence_mapsembler/read_coherence.cpp:988:39: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘group_t’ {aka ‘list_*’} [-Wformat=] 988 | "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n", | ~^ | | | unsigned int 989 | current_read_group, number_substitutions, | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} read_coherence_mapsembler/read_coherence.cpp:1002:39: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘group_t’ {aka ‘list_*’} [-Wformat=] 1002 | "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n", | ~^ | | | unsigned int 1003 | current_read_group, substarters[*nb_consensuses], | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/interface_libchash.cpp: In function ‘void iterate_and_fill_offsets(hash_t)’: read_coherence_mapsembler/interface_libchash.cpp:408:36: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li read_coherence_mapsembler/interface_libchash.cpp:408:54: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 ReadMapper.cpp: In function ‘uint64_t map_reads(Bank*, std::vector)’: ReadMapper.cpp:38:31: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:38:56: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:23: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:48: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/powerpc64le-linux-gnu/hdf5/serial make[2]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads_graph' dh_auto_build --sourcedirectory=kissreads -- k=29 cd kissreads && make -j4 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads' gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ src/libchash.c: In function ‘HashFind’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1221:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashFindLast’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1226:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashFirstBucket’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1290:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashNextBucket’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1300:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function ‘HashDoLoad’: src/libchash.c:1407:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1416:4: note: in expansion of macro ‘READ_UL’ 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1417:4: note: in expansion of macro ‘READ_UL’ 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1418:4: note: in expansion of macro ‘READ_UL’ 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1421:4: note: in expansion of macro ‘READ_UL’ 1421 | READ_UL(fp, cchKey); | ^~~~~~~ src/libchash.c:1423:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1428:7: note: in expansion of macro ‘READ_UL’ 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ src/libchash.c: In function ‘SparseRead’: src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:622:4: note: in expansion of macro ‘READ_UL’ 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:627:3: note: in expansion of macro ‘READ_UL’ 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/powerpc64le-linux-gnu/hdf5/serial -lm -O3 -lz -lgomp ################# # Compilation OK# ################# make[2]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1/kissreads' make[1]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_install make[1]: Entering directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1' mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline dh_install make[1]: Leaving directory '/build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg1-4_ppc64el.deb'. dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg1-4_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../mapsembler2_2.2.4+dfsg1-4_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-09-14T15:58:08Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 14 Sep 2025 15:58:08 +0000 | +------------------------------------------------------------------------------+ mapsembler2_2.2.4+dfsg1-4_ppc64el.changes: ------------------------------------------ Format: 1.8 Date: Fri, 20 Aug 2021 10:21:44 +0200 Source: mapsembler2 Binary: mapsembler2 mapsembler2-dbgsym Architecture: ppc64el Version: 2.2.4+dfsg1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: mapsembler2 - bioinformatics targeted assembly software Closes: 984226 Changes: mapsembler2 (2.2.4+dfsg1-4) unstable; urgency=medium . * d/salsa-ci.yml: disable i386 build and reprotest in Salsa CI * d/control: updated uploader address * d/control: standard version 4.5.1 * d/mans/mapsembler2_kissreads.1: fix typo-in-manual-page * spelling.patch: fix spelling-error-in-binary * add gcc11.patch (Closes: #984226) * d/s/lintian-overrides: override notices about components not sent, or otherwise missing about upstream, who is inactive for a while. * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 1cfbaae6786aee2aba98982100a57a0ef10d3c96 2451896 mapsembler2-dbgsym_2.2.4+dfsg1-4_ppc64el.deb 3874b6dd0a0366084cd502ae739b3d9483d156f7 6421 mapsembler2_2.2.4+dfsg1-4_ppc64el.buildinfo 31c47856f73c286ddae4c46fc575ad0fb42a7dba 739708 mapsembler2_2.2.4+dfsg1-4_ppc64el.deb Checksums-Sha256: 0c9e0314f46ac5b5a9c582e9e7540401ad6b27f0b8311d49b0c664d197efbbdc 2451896 mapsembler2-dbgsym_2.2.4+dfsg1-4_ppc64el.deb e2624122d80a7359e399c28d3ec096cd13a51d5fc13b12a45125c3a880d2dbdf 6421 mapsembler2_2.2.4+dfsg1-4_ppc64el.buildinfo 6629e0a31acb295e0ef67d685a04240b57d127844ce38758b1275fd54eb846c7 739708 mapsembler2_2.2.4+dfsg1-4_ppc64el.deb Files: dea2202cb6087ac8a514afb4db285974 2451896 debug optional mapsembler2-dbgsym_2.2.4+dfsg1-4_ppc64el.deb de9784fde1f2d9fba05a7381284b9028 6421 science optional mapsembler2_2.2.4+dfsg1-4_ppc64el.buildinfo 4a429bab1afd21e31e5788b172097d1b 739708 science optional mapsembler2_2.2.4+dfsg1-4_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo Sun, 14 Sep 2025 15:58:09 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mapsembler2 Binary: mapsembler2 mapsembler2-dbgsym Architecture: ppc64el Version: 2.2.4+dfsg1-4 Checksums-Md5: dea2202cb6087ac8a514afb4db285974 2451896 mapsembler2-dbgsym_2.2.4+dfsg1-4_ppc64el.deb 4a429bab1afd21e31e5788b172097d1b 739708 mapsembler2_2.2.4+dfsg1-4_ppc64el.deb Checksums-Sha1: 1cfbaae6786aee2aba98982100a57a0ef10d3c96 2451896 mapsembler2-dbgsym_2.2.4+dfsg1-4_ppc64el.deb 31c47856f73c286ddae4c46fc575ad0fb42a7dba 739708 mapsembler2_2.2.4+dfsg1-4_ppc64el.deb Checksums-Sha256: 0c9e0314f46ac5b5a9c582e9e7540401ad6b27f0b8311d49b0c664d197efbbdc 2451896 mapsembler2-dbgsym_2.2.4+dfsg1-4_ppc64el.deb 6629e0a31acb295e0ef67d685a04240b57d127844ce38758b1275fd54eb846c7 739708 mapsembler2_2.2.4+dfsg1-4_ppc64el.deb Build-Origin: Debian Build-Architecture: ppc64el Build-Date: Sun, 14 Sep 2025 15:58:07 +0000 Build-Path: /build/mapsembler2-eMgHPi/mapsembler2-2.2.4+dfsg1 Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.4-1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1), base-passwd (= 3.5.51), bash (= 5.1-3+b1), bc (= 1.07.1-2+b2), binutils (= 2.37-4), binutils-common (= 2.37-4), binutils-powerpc64le-linux-gnu (= 2.37-4), bsdextrautils (= 2.36.1-8), bsdutils (= 1:2.36.1-8), build-essential (= 12.9), bzip2 (= 1.0.8-4), cmake (= 3.18.4-2), cmake-data (= 3.18.4-2), coreutils (= 8.32-4), cpp (= 4:10.2.1-1), cpp-10 (= 10.2.1-6), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.4+nmu1), debianutils (= 5.1-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.2.1-6), gcc (= 4:10.2.1-1), gcc-10 (= 10.2.1-6), gcc-10-base (= 10.2.1-6), gcc-11-base (= 11.2.0-2), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-4), hdf5-helpers (= 1.10.6+repack-5), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10), libaec-dev (= 1.0.5-2), libaec0 (= 1.0.5-2), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.4.3-2+b1), libasan6 (= 11.2.0-2), libatomic1 (= 11.2.0-2), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0.5-1), libaudit1 (= 1:3.0.5-1), libbinutils (= 2.37-4), libblkid1 (= 2.36.1-8), libboost-dev (= 1.74.0.3), libboost1.74-dev (= 1.74.0-9), libbrotli1 (= 1.0.9-2+b2), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-16), libc-dev-bin (= 2.31-16), libc6 (= 2.31-16), libc6-dev (= 2.31-16), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 11.2.0-2), libcom-err2 (= 1.46.2-2), libcppunit-1.15-0 (= 1.15.1-2), libcppunit-dev (= 1.15.1-2), libcrypt-dev (= 1:4.4.25-1), libcrypt1 (= 1:4.4.25-1), libctf-nobfd0 (= 2.37-4), libctf0 (= 2.37-4), libcurl4 (= 7.74.0-1.3+b1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.4+nmu1), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libexpat1 (= 2.2.10-2), libffi7 (= 3.3-6), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-10-dev (= 10.2.1-6), libgcc-s1 (= 11.2.0-2), libgcrypt20 (= 1.8.7-6), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgfortran5 (= 11.2.0-2), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.1-5), libgomp1 (= 11.2.0-2), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-6), libhdf5-103-1 (= 1.10.6+repack-5), libhdf5-cpp-103-1 (= 1.10.6+repack-5), libhdf5-dev (= 1.10.6+repack-5), libhdf5-fortran-102 (= 1.10.6+repack-5), libhdf5-hl-100 (= 1.10.6+repack-5), libhdf5-hl-cpp-100 (= 1.10.6+repack-5), libhdf5-hl-fortran-100 (= 1.10.6+repack-5), libhogweed6 (= 3.7.3-1), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.23-1), libitm1 (= 11.2.0-2), libjpeg-dev (= 1:2.0.6-4), libjpeg62-turbo (= 1:2.0.6-4), libjpeg62-turbo-dev (= 1:2.0.6-4), libjsoncpp24 (= 1.9.4-4), libk5crypto3 (= 1.18.3-6), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-6), libkrb5support0 (= 1.18.3-6), libldap-2.4-2 (= 2.4.57+dfsg-3), liblsan0 (= 11.2.0-2), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-8), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.2+20201114-2), libncursesw6 (= 6.2+20201114-2), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.4.0-9), libpam-modules-bin (= 1.4.0-9), libpam-runtime (= 1.4.0-9), libpam0g (= 1.4.0-9), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-5), libpipeline1 (= 1.5.3-1), libprocps8 (= 2:3.3.17-5), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 11.2.0-2), libreadline8 (= 8.1-2), librhash0 (= 1.4.1-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.36.1-8), libssh2-1 (= 1.9.0-3), libssl1.1 (= 1.1.1k-1), libstdc++-10-dev (= 10.2.1-6), libstdc++6 (= 11.2.0-2), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.9-1), libsz2 (= 1.0.5-2), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-2), libubsan1 (= 11.2.0-2), libuchardet0 (= 0.0.7-1), libudev1 (= 247.9-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.36.1-8), libuv1 (= 1.40.0-2), libxml2 (= 2.9.10+dfsg-6.7), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.46-4), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), patch (= 2.7.6-7), perl (= 5.32.1-5), perl-base (= 5.32.1-5), perl-modules-5.32 (= 5.32.1-5), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-5), readline-common (= 8.1-2), rpcsvc-proto (= 1.4.2-3), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7), tar (= 1.34+dfsg-1), util-linux (= 2.36.1-8), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1629447704" +------------------------------------------------------------------------------+ | Package contents Sun, 14 Sep 2025 15:58:09 +0000 | +------------------------------------------------------------------------------+ mapsembler2-dbgsym_2.2.4+dfsg1-4_ppc64el.deb -------------------------------------------- new Debian package, version 2.0. size 2451896 bytes: control archive=760 bytes. 524 bytes, 12 lines control 517 bytes, 5 lines md5sums Package: mapsembler2-dbgsym Source: mapsembler2 Version: 2.2.4+dfsg1-4 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 2596 Depends: mapsembler2 (= 2.2.4+dfsg1-4) Section: debug Priority: optional Description: debug symbols for mapsembler2 Build-Ids: 19784e3567502e6db30755974954cc664cd17850 29ebaac6abed9f3d74ca5c783b05ab6c4cadfc46 9c81c050e9a513caeff6e654dab2fa3cb54f328f da15cba333e4134e6255044baa225af1375b5566 drwxr-xr-x root/root 0 2021-08-20 08:21 ./ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.build-id/19/ -rw-r--r-- root/root 1361984 2021-08-20 08:21 ./usr/lib/debug/.build-id/19/784e3567502e6db30755974954cc664cd17850.debug drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.build-id/29/ -rw-r--r-- root/root 749800 2021-08-20 08:21 ./usr/lib/debug/.build-id/29/ebaac6abed9f3d74ca5c783b05ab6c4cadfc46.debug drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.build-id/9c/ -rw-r--r-- root/root 100376 2021-08-20 08:21 ./usr/lib/debug/.build-id/9c/81c050e9a513caeff6e654dab2fa3cb54f328f.debug drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.build-id/da/ -rw-r--r-- root/root 380792 2021-08-20 08:21 ./usr/lib/debug/.build-id/da/15cba333e4134e6255044baa225af1375b5566.debug drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/ -rw-r--r-- root/root 46304 2021-08-20 08:21 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/mapsembler2.debug drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-20 08:21 ./usr/share/doc/mapsembler2-dbgsym -> mapsembler2 mapsembler2_2.2.4+dfsg1-4_ppc64el.deb ------------------------------------- new Debian package, version 2.0. size 739708 bytes: control archive=1840 bytes. 1398 bytes, 27 lines control 2274 bytes, 28 lines md5sums Package: mapsembler2 Version: 2.2.4+dfsg1-4 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 1571 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), bc Section: science Priority: optional Homepage: http://colibread.inria.fr/mapsembler2/ Description: bioinformatics targeted assembly software Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters). . It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice. . Mapsembler2 may be used for (not limited to): - Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. - Checks if a gene (input as starter) has an homolog in a set of reads - Checks if a known enzyme is present in a metagenomic NGS read set. - Enrich unmappable reads by extending them, possibly making them mappable - Checks what happens at the extremities of a contig - Remove contaminants or symbiont reads from a read set drwxr-xr-x root/root 0 2021-08-20 08:21 ./ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/bin/ lrwxrwxrwx root/root 0 2021-08-20 08:21 ./usr/bin/mapsembler2_extend -> mapsembler_extend -rwxr-xr-x root/root 461200 2021-08-20 08:21 ./usr/bin/mapsembler2_extremities -rwxr-xr-x root/root 133384 2021-08-20 08:21 ./usr/bin/mapsembler2_kissreads -rwxr-xr-x root/root 199024 2021-08-20 08:21 ./usr/bin/mapsembler2_kissreads_graph -rwxr-xr-x root/root 264680 2021-08-20 08:21 ./usr/bin/mapsembler_extend -rwxr-xr-x root/root 9585 2021-08-20 08:21 ./usr/bin/run_mapsembler2_pipeline drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/doc/mapsembler2/ -rw-r--r-- root/root 52 2014-09-11 15:09 ./usr/share/doc/mapsembler2/EXAMPLE.md -rw-r--r-- root/root 218 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.Debian -rw-r--r-- root/root 5260 2014-09-11 15:09 ./usr/share/doc/mapsembler2/README.md.gz -rw-r--r-- root/root 268 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.source -rw-r--r-- root/root 278 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.test -rw-r--r-- root/root 174 2020-10-13 21:18 ./usr/share/doc/mapsembler2/README.test_data -rw-r--r-- root/root 2206 2021-08-20 08:21 ./usr/share/doc/mapsembler2/changelog.Debian.gz -rw-r--r-- root/root 4017 2021-08-20 08:21 ./usr/share/doc/mapsembler2/copyright drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/doc/mapsembler2/examples/ -rw-r--r-- root/root 174 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/README.test_data -rw-r--r-- root/root 229216 2021-08-20 08:21 ./usr/share/doc/mapsembler2/examples/reads1.fa.gz -rw-r--r-- root/root 229914 2021-08-20 08:21 ./usr/share/doc/mapsembler2/examples/reads2.fa.gz -rw-r--r-- root/root 3853 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-mapsembler2_extremities.out.fa -rw-r--r-- root/root 3537 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-reads1_coherent_k_31_c_5_t_1.fasta -rw-r--r-- root/root 0 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-reads1_uncoherent_k_31_c_5_t_1.fasta -rw-r--r-- root/root 25386 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-res_k_31_c_5_t_3_modified_and_covered.json -rw-r--r-- root/root 78 2020-10-13 21:18 ./usr/share/doc/mapsembler2/examples/ref-res_mapsembler_k_31_c_2_t_1.fasta -rw-r--r-- root/root 83 2014-08-11 09:29 ./usr/share/doc/mapsembler2/examples/starter.fa -rw-r--r-- root/root 2382 2020-10-16 16:38 ./usr/share/doc/mapsembler2/run-unit-test drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/man/ drwxr-xr-x root/root 0 2021-08-20 08:21 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2021-08-20 08:21 ./usr/share/man/man1/mapsembler2_extend.1.gz -> mapsembler_extend.1.gz -rw-r--r-- root/root 742 2021-08-20 08:21 ./usr/share/man/man1/mapsembler2_extremities.1.gz -rw-r--r-- root/root 1316 2021-08-20 08:21 ./usr/share/man/man1/mapsembler2_kissreads.1.gz -rw-r--r-- root/root 878 2021-08-20 08:21 ./usr/share/man/man1/mapsembler2_kissreads_graph.1.gz -rw-r--r-- root/root 1033 2021-08-20 08:21 ./usr/share/man/man1/mapsembler_extend.1.gz -rw-r--r-- root/root 1022 2021-08-20 08:21 ./usr/share/man/man1/run_mapsembler2_pipeline.1.gz +------------------------------------------------------------------------------+ | Post Build Sun, 14 Sep 2025 15:58:10 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 14 Sep 2025 15:58:10 +0000 | +------------------------------------------------------------------------------+ Purging /build/mapsembler2-eMgHPi Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 14 Sep 2025 15:58:11 +0000 | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 346468 Build-Time: 63 Distribution: unstable Host Architecture: ppc64el Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderdjjP6XG/inputs/mapsembler2_2.2.4+dfsg1-4.dsc Machine Architecture: ppc64el Package: mapsembler2 Package-Time: 80 Source-Version: 2.2.4+dfsg1-4 Space: 346468 Status: successful Version: 2.2.4+dfsg1-4 -------------------------------------------------------------------------------- Finished at 2025-09-14T15:58:08Z Build needed 00:01:20, 346468k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdjjP6XG/out checking mapsembler2-dbgsym_2.2.4+dfsg1-4_ppc64el.deb: size differs for mapsembler2-dbgsym_2.2.4+dfsg1-4_ppc64el.deb